METHODS AND COMPOUNDS FOR IMPROVED IMMUNE CELL THERAPY
20210128615 · 2021-05-06
Inventors
- Winfried Wels (Frankfurt, DE)
- Anja Waldmann (Offenbach, DE)
- Congcong Zhang (Frankfurt, DE)
- Manuel Kaulich (Frankfurt am Main, DE)
Cpc classification
C12N2310/20
CHEMISTRY; METALLURGY
A61K35/17
HUMAN NECESSITIES
C12N15/11
CHEMISTRY; METALLURGY
C07K2317/64
CHEMISTRY; METALLURGY
C07K2317/76
CHEMISTRY; METALLURGY
C12N15/1136
CHEMISTRY; METALLURGY
C07K2317/80
CHEMISTRY; METALLURGY
International classification
A61K35/17
HUMAN NECESSITIES
C07K16/24
CHEMISTRY; METALLURGY
C12N15/11
CHEMISTRY; METALLURGY
C12N15/113
CHEMISTRY; METALLURGY
Abstract
The present invention pertains to methods and compounds useful in a therapy involving the administration of immune cells to a patient. The method of the invention involves the modification of cells of the immune system with agonists or antagonists of immune regulators such as Interleukin-10 (IL-10) or IL-6, in order to enhance and improve the immunological potential of the immune cells for therapy. Cells modified according to the method of the invention can be administered to a patient to support a treatment of proliferative diseases such as cancer or autoimmune disorders.
Claims
1. A method for enhancing the immunological activity of a target immune effector cell, the method comprising the steps of: (a) Providing a target immune effector cell, (b) Inhibiting in said target immune effector cell the expression, function, stability or secretion of one or more endogenously expressed regulators of immunity of said target immune effector cell.
2. The method according to claim 1, wherein said endogenously expressed regulator of immunity of said target immune effector cell is a secreted or a membrane-anchored protein having a suppressive activity towards the immunological activity, growth or proliferation of said target immune effector cell, and preferably wherein said protein is selected from IL-1, IL-4, IL-6, IL-10, IL-17, transforming growth factor (TGF)-β, CCL-2/MCP-1, CCL-5/RANTES, indoleamine 2,3-deoxygenase (IDO), vascular endothelial growth factor (VEGF), galectins, fibrinogen-like protein 2 (FGL2), CTLA-4, and/or PD-1; and preferably is IL-10, IL-6 and/or IL-4.
3. The method according to claim 1, wherein said regulator of immunity is a cytokine or chemokine, preferably an extracellular secreted or extracellular membrane-bound cytokine or chemokine, most preferably selected from IL-1, IL-4, IL-6, IL-10, IL17, TGF-β, CCL-2/MCP-1, and CCL-5/RANTES; and preferably is IL-10, or IL-6 and/or IL-4.
4. The method according to claim 1, wherein the target immune effector cell is selected from a monocytic cell, macrophage, dendritic cell, B cell, T cell, NK cell or NKT cell.
5. The method according to claim 1, wherein step (b) comprises bringing into contact the target immune effector cell with an inhibitor of said endogenously expressed regulator of immunity.
6. The method according to claim 1, wherein step (b) involves (i) the use of an inhibitory antibody specific for said endogenously expressed regulator of immunity, (ii) the use of an antisense nucleic acid construct targeting and inhibiting the expression of said endogenously expressed regulator of immunity, and/or (iii) the use of a gene editing approach introducing a deleterious mutation into the gene sequence of said endogenously expressed regulator of immunity.
7. The method according to claim 1, wherein in step (b) the inhibiting involves expression of an inhibitory genetic construct within the target immune effector cell, and wherein said inhibitory genetic construct when expressed impairs within the cell it is expressed, the expression, function, stability or secretion of said one or more endogenously expressed regulator of immunity of said target immune effector cell.
8. The method according to claim 7, wherein the inhibitory genetic construct encodes (i) an inhibitory antibody specific for said endogenously expressed regulator of immunity, (ii) an antisense nucleic acid construct targeting and inhibiting the expression of said endogenously expressed regulator of immunity, and/or (iii) the components for a gene editing approach introducing a deleterious mutation into the gene sequence of said endogenously expressed regulator of immunity.
9. The method according to claim 1, further comprising a step of bringing into contact the target immune effector cell with an activator and/or agonist of immune function of the target immune cell, such as a pro-inflammatory cytokine.
10. The method according to claim 9, wherein the activator and/or agonist of immune function is an agonist of IL-12 and/or IL-15, and preferably is selected from IL15 hyper-agonist or single-chain IL-12.
11. The method according to claim 10, wherein the method involves a co-expression in said target immune effector cell of an anti-IL-10 antibody and either an agonist and/or activator of IL-15 or an agonist and/or activator of IL-12, preferably of IL15 hyper-agonist or single-chain IL-12.
12. The method according to claim 6, wherein said inhibitory antibody is an anti-IL-10 or anti-IL-6 antibody, or an antigen binding fragment thereof, preferably wherein the anti-IL-10 or anti-IL-6 antibody, or antigen binding fragment thereof, binds and thereby inactivates IL10 or IL-6, respectively.
13. The method according to claim 7, wherein said inhibitory genetic construct encodes an anti-IL-10 or anti-IL-6 antibody, or antigen binding fragment thereof, for example as a secreted antibody, or as a membrane-associated antibody, or, preferably, as an endoplasmic reticulum (ER)-located antibody.
14. The method according to claim 1, wherein the target immune effector cell is a genetically engineered target immune effector cell.
15. The method according to claim 14, wherein the genetically engineered target immune effector cell comprises an effector genetic construct for the expression of a tumour targeting molecule, such as an antigen binding protein specific for a tumour-associated antigen or a tumour-specific antigen, such as an antibody or antibody-like molecule comprising an antigen-binding antibody fragment, a chimeric antigen receptor (CAR), a T-cell receptor (TCR) or TCR-like molecule comprising an antigen-binding TCR fragment.
16. A method of treatment of a disease in a subject in need of the treatment, comprising the administration of an inhibitor of an endogenously expressed regulator of immunity of a target immune effector cell, wherein the treatment comprises: (a) providing a target immune effector cell, (b) inhibiting in said target immune effector cell the expression, function, stability or secretion of one or more endogenously expressed regulators of immunity of said target immune effector cell; and administering said target immune effector cells having an enhanced immunological activity to the subject.
17. The method according to claim 16, wherein the treatment further comprises prior to step (a) a step of obtaining a biological sample of the subject and isolating therefrom said target immune effector cells.
18. The method according to claim 16, wherein the disease is cancer.
19. The method according to claim 16, further comprising a step of introducing into said target immune effector cells an effector genetic construct, for example an effector genetic construct encoding an antibody targeting tumour cells, a T-cell receptor (TCR), chimeric antigen receptor (CAR), and/or one or more pro-inflammatory cytokines such as IL-2, IL-12, single-chain IL-12, IL-15, IL-15 hyper-agonist, IL-18, IL-21, GM-CSF, TNF-α, or endoplasmic reticulum (ER)-retained or membrane anchored variants thereof, or any combination of these compounds.
20. The method according to claim 19, wherein the inhibitor of an endogenously expressed regulator of immunity is an anti-IL-10 antibody or an antibody-like molecule comprising an antigen-binding fragment thereof, and wherein the effector genetic construct encodes an agonist and/or activator of IL-15 or IL12, and preferably encodes IL-15 hyper-agonist or single-chain IL-12.
21. A method for the treatment of a disease in a subject in need of the treatment, comprising administering to the subject an immune effector cell which is obtained or is obtainable by a method according to claim 1.
22-23. (canceled)
Description
[0062] The present invention will now be further described in the following examples with reference to the accompanying figures and sequences, nevertheless, without being limited thereto. For the purposes of the present invention, all references as cited herein are incorporated by reference in their entireties. In the Figures:
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[0078] And in the sequences:
TABLE-US-00001 TABLE 1 Sequence description with reference to the attached sequence protocol NO: Description: Domains and regions: 1 anti-IL-10 complete sequence 2235 bp; 1 . . . 57 signal peptide; 58 . . . 408 mini-antibody variable domain heavy chain; 409 . . . 453 linker; 454 . . . 789 DNA variable domain light chain; 790 . . . 1500 IgG4 Fc region; 1501 . . . 1851 variable domain heavy chain; 1852 . . . 1896 linker; 1897 . . . 2232 variable domain light chain; 2233 . . . 2235 stop codon 2 anti-IL-10 complete sequence 744 aa; 1 . . . 19 signal peptide; 20 . . . 136 mini-antibody variable domain heavy chain; 137 . . . 151 linker; 152 . . . 263 protein variable domain light chain; 264 . . . 500 IgG4 Fc region; 501 . . . 617 variable domain heavy chain; 618 . . . 632 linker; 633 . . . 744 variable domain light chain 3 anti-IL-10ER complete sequence 831 bp; 1 . . . 57 signal peptide; 58 . . . 408 DNA variable domain heavy chain; 409 . . . 453 linker; 454 . . . 789 variable domain light chain; 790 . . . 816 HA tag; 817 . . . 828 ER retention signal; 829 . . . 831 stop codon 4 anti-IL-10ER complete sequence 276 aa; 1 . . . 19 signal peptide; 20 . . . 136 protein variable domain heavy chain; 137 . . . 151 linker; 152 . . . 263 variable domain light chain; 264 . . . 272 HA tag; 273 . . . 276 ER retention signal 5 anti-IL-10S complete sequence 819 bp; 1 . . . 57 signal peptide; 58 . . . 408 DNA variable domain heavy chain; 409 . . . 453 linker; 454 . . . 789 variable domain light chain; 790 . . . 816 HA tag; 817 . . . 819 stop codon 6 anti-IL-10S complete sequence 272 aa; 1 . . . 19 signal peptide; 20 . . . 136 protein variable domain heavy chain; 137 . . . 151 linker; 152 . . . 263 variable domain light chain; 264 . . . 272 HA tag 7 anti-IL-10TM complete sequence 1113 bp; 1 . . . 57 signal peptide; 58 . . . 408 DNA variable domain heavy chain; 409 . . . 453 linker; 454 . . . 789 variable domain light chain; 790 . . . 816 HA tag; 817 . . . 1002 CD8alpha hinge region; 1003 . . . 1110 CD28 transmembrane domain; 1111 . . . 1113 stop codon 8 anti-IL-10TM complete sequence 370 aa; 1 . . . 19 signal peptide; 20 . . . 136 protein variable domain heavy chain; 137 . . . 151 linker; 152 . . . 263 variable domain light chain; 264 . . . 272 HA tag; 273 . . . 334 CD8alpha hinge region; 335 . . . 370 CD28 transmembrane domain 9 anti-IL-10ER- complete sequence 2484 bp; 1 . . . 57 signal peptide; 58 . . . 408 P2A-single variable domain heavy chain; 409 . . . 453 linker; 454 . . . 789 chain IL-12 variable domain light chain; 790 . . . 816 HA tag; 817 . . . 828 ER DNA retention signal; 829 . . . 885 P2A sequence; 886 . . . 2481 single chain IL-12; 2482 . . . 2484 stop codon 10 anti-IL-10ER- complete sequence 827 aa; 1 . . . 19 signal peptide; 20 . . . 136 P2A-single variable domain heavy chain; 137 . . . 151 linker; 152 . . . 263 chain IL-12 variable domain light chain; 264 . . . 272 HA tag; 273 . . . 276 ER protein retention signal; 277 . . . 295 P2A sequence; 296 . . . 827 single chain IL-12 11 anti-IL-10ER- complete sequence 1578 bp; 1 . . . 57 signal peptide; 58 . . . 408 P2A-IL-15 variable domain heavy chain; 409 . . . 453 linker; 454 . . . 789 hyper-agonist variable domain light chain; 790 . . . 816 HA tag; 817 . . . 828 ER DNA retention signal; 829 . . . 885 P2A sequence; 886 . . . 1575 IL-15 hyper-agonist; 1576 . . . 1579 stop codon 12 anti-IL-10ER- complete sequence 525 aa; 1 . . . 19 signal peptide; 20 . . . 136 P2A-IL-15 variable domain heavy chain; 137 . . . 151 linker; 152 . . . 263 hyper-agonist variable domain light chain; 264 . . . 272 HA tag; 273 . . . 276 ER protein retention signal; 277 . . . 295 P2A sequence; 296 . . . 525 IL-15 hyper-agonist 13 anti-IL-6ER complete sequence 828 bp; 1 . . . 57 signal peptide; 58 . . . 417 DNA variable domain heavy chain; 418 . . . 462 linker; 463 . . . 786 variable domain light chain; 787 . . . 813 HA tag; 814 . . . 825 ER retention signal; 826 . . . 828 stop codon 14 anti-IL-6ER complete sequence 275 aa; 1 . . . 19 signal peptide; 20 . . . 139 protein variable domain heavy chain; 140 . . . 154 linker; 155 . . . 262 variable domain light chain; 263 . . . 271 HA tag; 272 . . . 275 ER retention signal 15 anti-IL-6S complete sequence 816 bp; 1 . . . 57 signal peptide; 58 . . . 417 DNA variable domain heavy chain; 418 . . . 462 linker; 463 . . . 786 variable domain light chain; 787 . . . 813 HA tag; 814 . . . 816 stop codon 16 anti-IL-6S complete sequence 271 aa; 1 . . . 19 signal peptide; 20 . . . 139 protein variable domain heavy chain; 140 . . . 154 linker; 155 . . . 262 variable domain light chain; 263 . . . 271 HA tag 17 anti-IL-6TM complete sequence 1110 bp; 1 . . . 57 signal peptide; 58 . . . 417 DNA variable domain heavy chain; 418 . . . 462 linker; 463 . . . 786 variable domain light chain; 787 . . . 813 HA tag; 814 . . . 999 CD8alpha hinge region; 1000 . . . 1107 CD28 transmembrane domain; 1108 . . . 1110 stop codon 18 anti-IL-6TM complete sequence 369 aa; 1 . . . 19 signal peptide; 20 . . . 139 protein variable domain heavy chain; 140 . . . 154 linker; 155 . . . 262 variable domain light chain; 263 . . . 271 HA tag; 272 . . . 333 CD8alpha hinge region; 334 . . . 369 CD28 transmembrane domain 19 IL10 gRNA 1f RNA sequence provided as DNA code (T instead of U) 20 IL10 gRNA 1r RNA sequence provided as DNA code (T instead of U) 21 IL10 gRNA 2f RNA sequence provided as DNA code (T instead of U) 22 IL10 gRNA 2r RNA sequence provided as DNA code (T instead of U) 23 IL10 gRNA 3f RNA sequence provided as DNA code (T instead of U) 24 IL10 gRNA 3r RNA sequence provided as DNA code (T instead of U) 25 IL10 gRNA 4f RNA sequence provided as DNA code (T instead of U) 26 IL10 gRNA 4r RNA sequence provided as DNA code (T instead of U) 27 IL-10 shRNA RNA sequence provided as DNA code (T instead of U) 28 IL-10 full Immature protein sequence length protein 29 IL-6 full length Immature protein sequence protein
EXAMPLES
Example 1: Inhibition of IL-10 Activity by a Recombinant Tetravalent Anti-IL-10 Antibody
[0079] Monoclonal anti-IL-10 antibodies able to interfere with IL-10 activity have been described by different groups, with one of them having already been tested in a phase I clinical trial for systemic lupus erythematosus. Nevertheless, such IgG antibodies only possess two antigen binding sites which may limit their therapeutic potential. To enhance IL-10-neutralizing activity, the inventors designed a novel recombinant anti-IL-10 mini-antibody with four IL-10 binding domains. This tetravalent mini-antibody is a disulfide-linked homodimer of a molecule consisting of a single chain variable fragment (scFv) of anti-IL-10 antibody BT-063 (PCT/EP2010/068569) fused to hinge, CH2 and CH3 domains of human IgG4 and a second scFv fragment of BT-063 (
[0080] Secretion of the recombinant antibody was achieved via an immunoglobulin heavy chain signal peptide at the very N-terminus. The anti-IL-10 mini-antibody was expressed in human HEK 293 cells and purified from culture supernatant by Protein G affinity chromatography. Specific binding of purified anti-IL-10 mini-antibody to recombinant human IL-10 (rhIL-10) was demonstrated by ELISA (
[0081] The data of Example 1 demonstrate that an anti-IL-10 antibody such as the tetravalent anti-IL-10 mini-antibody described herein can be used to block undesired IL-10-induced activities during adoptive cell therapy without limiting the direct antitumour activity of unmodified or CAR-engineered immune effector cells.
Example 2: Intracellular Expression of IL-10-Neutralizing Antibodies
[0082] In a second approach the inventors designed recombinant anti-IL-10 antibodies for direct expression in immune effector cells to block IL-10 activity in the extracellular space (secreted anti-IL-10; anti-IL-10S), prevent secretion of endogenously synthesized IL-10 by inhibiting its transport to the cell surface (endoplasmic reticulum-retained anti-IL-10; anti-IL-10ER), or trap IL-10 on the cell surface (transmembrane anti-IL-10; anti-IL-10TM). Anti-IL-10S consists of an N-terminal immunoglobulin heavy chain signal peptide for direction into the secretory pathway, an scFv fragment of anti-IL-10 antibody BT-063, and a peptide derived from human influenza virus hemagglutinin (HA-tag) for immunological detection (
[0083] The data summarized in Example 2 demonstrate that anti-IL-10 antibodies can be directly expressed in various types of immune effector cells highly relevant for adoptive immunotherapy, including CAR-engineered variants thereof.
Example 3: Inhibition of IL-10 Production by Intracellular Expression of IL-10 Neutralizing Antibodies
[0084] Next, the consequences of intracellular expression of recombinant anti-IL-10 antibodies on activation-induced IL-10 production by NK cells and CAR-engineered NK cells, and on constitutive IL-10 production by B cells were investigated. NK cells transduced with lentiviral vectors encoding anti-IL-10S, anti-IL-10ER or anti-IL-10TM were cultured for 6 hours either in the absence of target cells, or in the presence of NK-sensitive K.sub.562 erythroleukemia cells at an E:T ratio of 1:1. Unmodified NK cells and K.sub.562 cells kept in the absence of NK cells were included as controls. Culture supernatants were collected and secretion of IL-10 was measured using a cytometric bead array (CBA). While unmodified NK cells did not secrete large amounts of IL-10 in the absence of target cells, activation by contact with target cells strongly induced IL-10 production (
[0085] The data summarized in Example 3 demonstrate that intracellular expression of anti-IL-m antibodies in various types of immune effector cells strongly inhibits activation-induced and constitutive IL-10 secretion.
Example 4: Silencing of IL-10 Expression by IL-10-Specific shRNA
[0086] Genetic modification of immune effector cells resulting in the expression of an IL-10-specific short hairpin (sh) RNA was investigated as an alternative means to reduce production of IL-10. shRNAs are artificial RNA molecules able to silence expression or inhibit translation of their target mRNA by RNA interference, resulting in the knockdown of target protein expression. To inhibit IL-10 expression, a commercially available lentiviral pGIPZ vector was used that encodes IL-10-specific shRNA (IL-10-specific region of the shRNA: 5′-UUCGUAUCUUCAUUGUCAU-3′) together with green fluorescent protein (GFP) as a marker. A vector encoding an irrelevant shRNA was used as a control. VSV-G pseudotyped lentiviral particles were generated and used for transduction of NK cells and CAR-engineered NK cells as representative examples for immune effector cells relevant for adoptive cell therapy. Successfully transduced cells were enriched by flow cytometric cell sorting of GFP-positive cells. Untransduced NK cells, or NK cells transduced with lentiviral vectors encoding IL-10-specific shRNA (shRNA IL-10) or control shRNA (shRNA control) were stimulated with phorbol 12-myristate 13-acetate (PMA) and ionomycin (each at a concentration of 1 μg/mL) for 5 hours in the presence of GolgiPlug. Then whole cell lysates were prepared and analyzed for IL-10 by immunoblot analysis with IL-10-specific antibody. As expected, treatment with PMA/ionomycin resulted in strong activation-induced expression of IL-10 which was not affected by transduction of the NK cells with a control shRNA construct. In contrast, transduction of NK cells with the IL-10-specific shRNA vector resulted in marked reduction of IL-10 protein expression (
[0087] The data summarized in Example 4 demonstrate that silencing of IL-10 expression by RNA interference strongly reduces IL-10 production in immune effector cells relevant for adoptive cell therapy.
Example 5: Downregulation of IL-10 Expression by CRISPR/Cas9-Mediated Gene Editing
[0088] The clustered regularly interspaced short palindromic repeats-associated RNA-guided (CRISPR)/CRISPR associated protein (Cas) 9 system allows specific RNA-guided gene editing including the silencing of a gene of interest in mammalian cells. To downregulate IL-10 expression using the CRISPR/Cas9 system, IL-10-specific guide RNAs (gRNAs) were designed and incorporated into a lentiviral transfer vector also encoding Cas9 nuclease, a puromycin resistance gene and EGFP as a marker. A similar construct lacking a guide RNA served as a control. VSV-G pseudotyped lentiviral particles were generated and used for transduction of NK cells and CAR-engineered NK cells as representative examples for immune effector cells relevant for adoptive cell therapy. Successfully transduced cells were enriched by selection with puromycin, followed by flow cytometric cell sorting of EGFP-positive cells. Untransduced NK cells, or NK cells transduced with lentiviral vectors encoding Cas9 (Cas9), or Cas 9 together with IL-10-specific gRNA (IL-10 CRISPR/Cas9) were stimulated with PMA/ionomycin (each at a concentration of 1 μg/mL) for 5 hours in the presence of GolgiPlug. Then whole cell lysates were prepared and analyzed for IL-10 by immunoblot analysis with IL-10-specific antibody. As expected, treatment with PMA/ionomycin resulted in strong activation-induced expression of IL-10 which was not affected by transduction of the NK cells with a Cas9-encoding vector. In contrast, transduction of NK cells with a vector encoding Cas9 and IL-10-specific gRNA resulted in a loss of IL-10 protein expression (
[0089] The data summarized in Example 5 demonstrate that targeted knockout of IL-10 expression by specific gene editing with the CRISPR/Cas9 nuclease system eliminates IL-10 production in immune effector cells relevant for adoptive cell therapy.
Example 6: Viability and Proliferation of Immune Effector Cells after Downregulation of IL-10 Production
[0090] As demonstrated in the previous examples, different strategies including intracellular expression of anti-IL-10 antibodies (Examples 2, 3), shRNA-mediated gene silencing (Example 4) and CRISPR/Cas9-mediated gene knockout (Example 5) can be employed for genetic modification of immune effector cells to markedly reduce or eliminate IL-10 expression. To assess possible consequences of downregulation of IL-10 expression on the growth of such cells, cell proliferation was measured over a period of 7 days. NK cells genetically engineered to express an ErbB2-specific CAR together with an ER-retained anti-IL-10 antibody, IL-10-specific shRNA, or Cas9 nuclease and IL-10-specific guide RNA were used as representative examples of immune effector cells relevant for adoptive therapy. The cells were seeded in 24-well cell culture plates on day 0 at a cell density of 1.5×10.sup.5 cells/mL, and cell growth was monitored by counting viable cells using trypan blue exclusion once per day for a period of 7 days. CAR NK cells with undisturbed IL-10 expression were included as controls. CAR NK cells modified by intracellular expression of anti-IL-10 antibody (anti-IL-10ER;
[0091] The data summarized in Example 6 demonstrate that inhibition of IL-10 production and activity by various means, including intracellular expression of an anti-IL-10 antibody, silencing of IL-10 expression by RNA interference and targeted knockout of IL-10 expression with the CRISPR/Cas9 system, has no negative effect on viability and proliferation of immune effector cells relevant for adoptive cell therapy.
Example 7: Antitumour Activity of Immune Effector Cells after Downregulation of IL-10 Production
[0092] Downregulation of IL-10 production in adoptively transferred immune effector cells is intended to limit the inhibitory effects of this immunoregulatory cytokine on bystander immune cells without interfering with direct antitumour activity of the adoptively transferred cells. To assess possible consequences of downregulation of IL-10 expression on specific cytotoxicity and direct antitumour activity, CAR-mediated cytotoxicity of CAR engineered ErbB2-specific NK cells also expressing an ER-retained anti-IL-10 antibody, IL-10-specific shRNA, or Cas9 nuclease and IL-10-specific guide RNA against ErbB2-positive MDA-MB453 human breast carcinoma cells was tested in 2 hour co-culture assays at different E:T ratios. CAR NK cells with undisturbed IL-10 expression were included as controls. Thereby CAR NK cells modified by intracellular expression of anti-IL-10 antibody (anti-IL-10ER;
[0093] The data summarized in Example 7 demonstrate that inhibition of IL-10 production and activity by various means, including intracellular expression of an anti-IL-10 antibody, silencing of IL-10 expression by RNA interference and targeted knockout of IL-10 expression with the CRISPR/Cas9 system, has no negative effect on direct antitumour activity of immune effector cells relevant for adoptive cell therapy.
Example 8: Downregulation of IL-10 Production in Immune Effector Cells Enhances Production of the Pro-Inflammatory Cytokine TNF-α
[0094] IL-10 inhibits the production of pro-inflammatory cytokines like IL-1β, IL-6, IL-12, G-CSF, GM-CSF and TNF-α in bystander immune cells. Also the bidirectional NK-DC crosstalk through IFN-γ, IL-12 and TNF-α to enhance T-cell priming can be significantly diminished by IL-10. To assess whether downregulation of IL-10 production in immune effector cells can modulate these cells' endogenous expression of pro-inflammatory cytokines such as TNF-α, NK cells genetically engineered to express an ErbB2-specific CAR together with anti-IL-10 antibodies or IL-10-specific shRNA were used as representative examples of immune effector cells relevant for adoptive therapy. CAR NK cells transduced with lentiviral vectors encoding anti-IL-10S, anti-IL-10ER, anti-IL-10TM or IL-10-specific shRNA were cultured for 6 hours either in the absence of target cells, or in the presence of ErbB2-expressing MDA-MB453 breast carcinoma cells at an E:T ratio of 1:1. CAR NK cells with undisturbed IL-10 expression including CAR NK cells carrying an irrelevant shRNA construct were included as controls. Culture supernatants were collected, and TNF-α levels were determined using a cytometric bead array. CAR-mediated activation of NK cells by ErbB2-positive target cells induced TNF-α secretion, which was further enhanced in CAR NK cells expressing ER-retained (anti-IL-10ER) or membrane-anchored anti-IL-10 antibody (anti-IL-10TM) (
[0095] The data summarized in Example 8 demonstrate that inhibition of IL-10 production and activity by various means, including intracellular expression of anti-IL-10 antibodies and silencing of IL-10 expression by RNA interference can enhance the cells' endogenous production of the pro-inflammatory cytokine TNF-α, which is important for antitumour activity of bystander immune cells including the maturation of professional antigen presenting cells and other mechanisms that support the induction of an adaptive antitumour immune response.
Example 9: Downregulation of IL-10 Production in Immune Effector Cells Prevents Polarization of Bystander Macrophages Towards a Tumour-Promoting M2 Phenotype
[0096] Tumour-associated macrophages (TAMs) are one of the most abundant and crucial non-neoplastic cells in the tumour microenvironment. TAMs are primarily polarized towards tumour-promoting M2 subsets with polarization into tumour-suppressive M1 macrophages being only rarely observed. This imbalance in macrophage polarization is a major contributor to maintaining a tumour-promoting environment. To assess whether downregulation of IL-10 production modulates polarization of bystander macrophages, NK cells genetically engineered to express an ErbB2-specific CAR together with an intracellular anti-IL-10 antibody (anti-IL-10ER) were used as a representative example of immune effector cells relevant for adoptive therapy. Human monocyte-derived macrophages from healthy donors were used in a transwell assay, with macrophages cultured in the bottom chamber, separated by a membrane with a pore size of 0.4 μm from co-cultured CAR NK cells kept in the upper chamber. CAR NK cells co-expressing anti-IL-10ER were either kept alone, or co-cultured in the upper chamber with ErbB2-expressing MDA-MB453 breast carcinoma cells at an E:T ratio of 1:1 to induce CAR-mediated activation of the NK cells. Unmodified NK cells without CAR and anti-IL-10ER expression and CAR NK cells without anti-IL-10ER expression were included as controls. For comparison, macrophages cultured in the absence of NK cells were treated with IFN-γ and lipopolysaccharide (LPS), known to induce polarization towards an M1-like phenotype. After 24 hours, macrophages were harvested and polarization was investigated by assessing the levels of surface markers distinguishing M1-like and M2-like subpopulations (HLA-DR and CD86: high in M1, low in M2; CD163: low in M1, high in M2). In the presence of target tumour cells, CAR-mediated activation of CAR NK cells resulted in a downregulation of the M1 markers HLA-DR and CD86 in co-cultured macrophages (
[0097] The data summarized in Example 9 demonstrate that the therapeutic efficacy of immune effector cells for adoptive cell therapy can be limited by promoting polarization of bystander macrophages towards a tumour-promoting M2 phenotype. If IL-10 production or secretion in the immune effector cells is downregulated, this effect is reversed and polarization of macrophages is shifted towards a tumour-suppressive M1-like phenotype, expected to enhance therapeutic efficacy of adoptive cell therapy.
Example 10: Intracellular Expression of IL-6-Neutralizing Antibodies
[0098] Similar to IL-10, interleukin-6 (IL-6) is an important endogenous regulator of immunity in immune effector cells, also influencing the activity of bystander immune cells (Fisher et al., Semin Immunol 26: 38-47, 2014). Following an approach similar to the one described for anti-IL-10 antibodies in Example 2, the inventors designed recombinant anti-IL-6 antibodies for direct expression in immune effector cells to block IL-6 activity in the extracellular space (secreted anti-IL-6; anti-IL-6S), prevent secretion of endogenously synthesized IL-6 by inhibiting its transport to the cell surface (endoplasmic reticulum-retained anti-IL-6; anti-IL-6ER), or trap IL-6 on the cell surface (transmembrane anti-IL-6; anti-IL-6TM) (Figure ii). Anti-IL-6S consists of an N-terminal immunoglobulin heavy chain signal peptide for direction into the secretory pathway, a codon-optimized scFv fragment of humanized anti-IL-6 antibody olokizumab (Shaw et al. mAbs 6: 774-782, 2014), and a peptide derived from human influenza virus hemagglutinin (HA-tag) for immunological detection (
[0099] The data summarized in Example 10 demonstrate that anti-IL-6 antibodies can be engineered like anti-IL-10 antibodies in different formats and directly be expressed in various types of immune effector cells highly relevant for adoptive immunotherapy, including CAR-engineered variants thereof.
Example 11: Co-Expression of IL-10-Neutralizing Antibodies and Pro-inflammatory Cytokines
[0100] IL-12 and IL-15 are important pro-inflammatory cytokines with therapeutic potential for the treatment of cancer (see Floros & Tarhini, Semin Oncol 42: 539-548, 2015). To demonstrate the feasibility of co-expression of an inhibitor of an endogenous regulator of immunity in immune effector cells such as ER-retained anti-IL-10 antibody (anti-IL-10ER) with pro-inflammatory cytokines such as IL-12 or IL-15, the inventors designed lentiviral constructs for simultaneous expression of anti-IL-10ER and either IL-15 hyper-agonist (
[0101] The data summarized in Example 11 demonstrate that an anti-IL-10 antibody can be combined with the pro-inflammatory cytokines IL-15 hyper-agonist or single chain IL-12 for co-expression in various types of immune effector cells highly relevant for adoptive immunotherapy, including CAR-engineered variants thereof. Thereby simultaneously inhibiting in a target immune effector cell the expression, function, stability or secretion of an endogenously expressed regulator of immunity as achieved here by expressing an anti-IL-10 antibody, and providing the same immune effector cell with an activator and/or agonist not naturally expressed by said immune effector cell such as a pro-inflammatory cytokine like IL-15 hyper-agonist or single chain IL-12, can enhance the immunological activity of the target immune effector cell even more strongly than only inhibiting an endogenously expressed regulator of immunity.
Example 12: Inhibition of the Activity of NK-Cell-Derived IL-10 by a Recombinant Tetravalent Anti-IL-10 Antibody Prevents Polarization of Macrophages Towards a Tumour-Promoting M2 Phenotype
[0102] The imbalance in macrophage polarization is a major contributor to maintaining a tumour-promoting environment, with tumour-associated macrophages primarily being polarized towards tumour-promoting M2 subsets. To assess whether inhibition of the activity of secreted IL-10 modulates polarization of bystander macrophages, NK cells genetically engineered to express an ErbB2-specific CAR as a representative example of immune effector cells relevant for adoptive therapy were exposed to the tetravalent anti-IL-10 antibody from Example 1. Human monocyte-derived macrophages from healthy donors were used in a transwell assay, with macrophages cultured in the bottom chamber, separated by a membrane with a pore size of 0.4 μm from co-cultured CAR NK cells kept in the upper chamber. CAR NK cells were either kept alone in the absence or presence of 2 μg/mL of tetravalent anti-IL-10 antibody or an isotype-matched IgG4-Fc control protein, or co-cultured in the upper chamber in the absence or presence of tetravalent anti-IL-10 antibody or the IgG4-Fc control protein with ErbB2-expressing MDA-MB453 breast carcinoma cells at an E:T ratio of 1:1 to induce CAR-mediated activation of the NK cells. Unmodified NK cells without CAR expression were included as control. For comparison, macrophages cultured in the absence of NK cells were treated with IFN-γ and lipopolysaccharide (LPS), known to induce polarization towards an M1-like phenotype. After 24 hours, macrophages were harvested and polarization was investigated by assessing the levels of surface markers distinguishing M1-like and M2-like subpopulations (HLA-DR and CD86: high in M1, low in M2; CD163: low in M1, high in M2). In the presence of target tumour cells, CAR-mediated activation of CAR NK cells resulted in a downregulation of the M1 markers HLA-DR and CD86 in co-cultured macrophages (
[0103] The data summarized in Example 12 confirm that the therapeutic efficacy of immune effector cells for adoptive cell therapy can be limited by promoting polarization of bystander macrophages towards a tumour-promoting M2 phenotype. If the activity of IL-10 secreted by the immune effector cells is inhibited, this effect is reversed and polarization of macrophages is shifted towards a tumour-suppressive M1-like phenotype, expected to enhance therapeutic efficacy of adoptive cell therapy.
Example 13: Downregulation of IL-10 Production in Immune Effector Cells Enhances Maturation of Bystander Dendritic Cells
[0104] Dendritic cells (DCs) are crucial for uptake and presentation of tumour antigens to T cells, thereby facilitating T-cell activation and subsequent T-cell-mediated antitumour activity. A prerequisite for effective antigen presentation to T cells is maturation of DCs from an immature state to mature DCs, which are characterized by enhanced expression of costimulatory and major histocompatibility complex molecules. To assess whether downregulation of IL-10 production modulates maturation of bystander DCs, NK cells genetically engineered to express an ErbB2-specific CAR together with an intracellular anti-IL-10 antibody (anti-IL-10ER) were used as a representative example of immune effector cells relevant for adoptive therapy. Immature human monocyte-derived dendritic cells (iDCs) from healthy donors were used in a transwell assay, with iDCs cultured in the bottom chamber, separated by a membrane with a pore size of 0.4 μm from co-cultured CAR NK cells kept in the upper chamber. CAR NK cells co-expressing anti-IL-10ER were either kept alone, or co-cultured in the upper chamber with ErbB2-expressing MDA-MB453 breast carcinoma cells at an E:T ratio of 1:1 to induce CAR-mediated activation of the NK cells. Unmodified NK cells without CAR and anti-IL-10ER expression and CAR NK cells without anti-IL-10ER expression were included as controls. For comparison, iDCs were cultured in the absence of NK cells with TNF-α, IL-1β, IL-6 and prostaglandin E2, known to induce DC maturation. After 24 hours, DCs were harvested and DC maturation was investigated by assessing the levels of surface markers distinguishing immature and mature DC subpopulations (HLA-DR, CD86 and CD83: high in mature DCs, low in immature DCs). In the presence of target tumour cells, CAR-mediated activation of CAR NK cells resulted in a slight upregulation of the DC maturation markers HLA-DR and CD86 (
[0105] The data summarized in Example 13 demonstrate that immune effector cells for adoptive cell therapy can induce maturation of bystander dendritic cells towards a more mature phenotype. If IL-10 secretion in the immune effector cells is downregulated, this effect is strongly enhanced and maturation of dendritic cells is markedly increased, expected to enhance therapeutic efficacy of adoptive cell therapy.
Example 14: Inhibition of IL-6 Production by Intracellular Expression of IL-6-Neutralizing Antibodies
[0106] The consequences of intracellular expression of the recombinant anti-IL-6 antibodies described in Example m on activation-induced IL-6 production by macrophages/monocytes, and on constitutive IL-6 production by breast carcinoma cells were investigated. Macrophages/monocytes transduced with lentiviral vectors encoding anti-IL-6S or anti-IL-6ER were cultured for 16 hours in medium containing 100 ng/mL LPS to induce IL-6 expression. Macrophages/monocytes kept in the absence of LPS were included as controls. Likewise, MDA-MB468 breast carcinoma cells which constitutively secrete IL-6 were transduced with lentiviral vectors encoding anti-IL-6S or anti-IL-6ER. Successfully transduced cells were enriched as described in Example 10 for macrophages/monocytes, and cultured in fresh medium for 6 hours. Untransduced MDA-MB468 cells served as control. Culture supernatants from macrophages/monocytes and breast carcinoma cells were collected and secretion of IL-6 was measured using a cytometric bead array (CBA). While resting macrophages/monocytes did not secrete measurable amounts of IL-6, activation with LPS strongly induced IL-6 production (
[0107] Likewise, constitutive secretion of IL-6 by MDA-MB468 cells was markedly reduced by expression of anti-IL-10S or anti-IL-10ER (
[0108] The data summarized in Example 14 demonstrate that intracellular expression of anti-IL-6 antibodies in immune effector cells and tumor cells strongly inhibits activation-induced and constitutive IL-6 secretion.