Non-genetic modification of enveloped viruses
10982194 · 2021-04-20
Assignee
Inventors
Cpc classification
C12N2710/16632
CHEMISTRY; METALLURGY
C12N2710/24122
CHEMISTRY; METALLURGY
C12N7/00
CHEMISTRY; METALLURGY
C12N2710/24141
CHEMISTRY; METALLURGY
C12N2710/24132
CHEMISTRY; METALLURGY
Y02A50/30
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
A61K2039/60
HUMAN NECESSITIES
C12N2710/16641
CHEMISTRY; METALLURGY
A61P35/00
HUMAN NECESSITIES
International classification
A01N63/00
HUMAN NECESSITIES
A61K39/00
HUMAN NECESSITIES
C12N7/00
CHEMISTRY; METALLURGY
Abstract
The invention concerns a modified enveloped virus wherein said virus has at least one anti-tumor, tumor-specific peptide non-genetically attached to or inserted in/through the viral envelope; a pharmaceutical composition comprising same; and a method of treating cancer using same.
Claims
1. A modified enveloped virus selected from the group consisting of comprising Herpes Simplex Virus 1 (HSV-1), Herpes Simplex Virus 2 (HSV-2), Vaccinia, Vesicular stomatitis Indiana virus (VSV), Measles Virus (MeV), Maraba virus and New Castle Disease (NDV) virus wherein said virus has at least one anti-tumor, tumor-specific peptide non-genetically attached to or inserted in/through the viral envelope, further wherein the peptide has a length selected from the group consisting of: 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49 and 50 amino acids.
2. The modified enveloped virus according to claim 1 wherein a plurality of said peptides are non-genetically attached to or inserted in/through the viral envelope.
3. The modified enveloped virus according to claim 2 wherein: said peptides are identical; or said peptides have greater than 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% sequence identity with each other; or said peptides are representative of a number of different antigens.
4. The modified enveloped virus according to claim 1 wherein said peptide(s) is/are MHC-I restricted.
5. The modified enveloped virus according to claim 1 wherein said peptide(s) is/are MHC-II restricted.
6. The modified enveloped virus according to claim 2 wherein said peptides comprise a mix of MHC-I restricted peptides and MHC-II restricted peptides.
7. The modified enveloped virus according to claim 1 wherein said peptide(s) comprise(s) a fusion molecule including a plurality of different antigens.
8. The modified enveloped virus according to claim 1 wherein said peptide also comprises at least one cleavage site.
9. The modified enveloped virus according to claim 1 wherein said peptide also comprises at least one immunoproteasome processing site.
10. The modified enveloped virus according to claim 1 wherein said peptide is positioned between a pair of immunoproteasome processing sites and upstream or downstream thereof is at least one cleavage site.
11. The modified enveloped virus according to claim 1 wherein said peptide(s) are non-covalently attached to or inserted in/through the viral envelope.
12. The modified enveloped virus according to claim 1 wherein said peptide(s) is/are non-genetically attached to or inserted in/through said viral envelope using either a cell penetrating peptide or a cholesterol-conjugated peptide.
13. The modified enveloped virus according to claim 1 wherein said peptide(s) is/are non-genetically attached to or inserted in/through said viral envelope using either a cell penetrating peptide or a cholesterol-conjugated peptide selected from the group consisting of: GRKKRRQRRRPQ (SEQ ID NO: 1), CPP sequence in the N- or C-terminus of the said antitumor, tumor-specific peptide; RQIKIWFQNRRMKWKK (SEQ ID NO: 2), CPP sequence in the N- or C-terminus of the said anti-tumor, tumor-specific peptide; KLALKLALKALKAALKLA (SEQ ID NO: 3), CPP sequence in the N- or C-terminus of the said anti-tumor, tumor-specific peptide; RRRRRRRRR (SEQ ID NO: 4), CPP sequence in the N- or C-terminus of the said antitumor, tumor-specific peptide; KETWWETWWTEWSQPKKKRKV (SEQ ID NO: 5), CPP sequence in the N- or C-terminus of the said anti-tumor, tumor-specific peptide; AGYLLGKINLKALAALAKKIL (SEQ ID NO: 6), CPP sequence in the N- or C-terminus of the said anti-tumor, tumor-specific peptide; AGLWRALWRLLRSLWRLLWRA (SEQ ID NO: 7), CPP sequence in the N- or C-terminus of the said anti-tumor, tumor-specific peptide; and a cholesterol moiety N- or C-terminus of the said anti-tumor, tumor-specific peptide.
14. The modified enveloped virus according to claim 13 wherein said peptide(s) is/are selected from the group consisting of: TABLE-US-00003 (SEQ ID NO: 8) GRKKRRQRRRPQRVRRALISLEQLESIINTFEKLTEW; (SEQ ID NO: 9) RQIKIWFQNRRMKWKKRWEKISIINFEKLYKLK; (SEQ ID NO: 10) KLALKLALKALKAALKLARWEKISIINFEKLYKLK; (SEQ ID NO: 11) RRRRRRRRRRWEKISIINFEKLYKLK; (SEQ ID NO: 12) RWEKISIINFEKLYKLRRRRRRRRR; (SEQ ID NO: 13) RWEKISIINFEKLYKLKETWWETWWTEWSQPKKKRKV; (SEQ ID NO: 14) RWEKISIINFEKLYKLAGYLLGKINTLKALAALAKKIL; (SEQ ID NO: 15) AGLWRALWRLLRSLWRLLWRA RWEKISIINFEKLYKLK; (SEQ ID NO: 16) GRKKRRQRRRPQRWEKISIINFEKLYKL; (SEQ ID NO: 17) GRKKRRQRRRPQRWEKISIINFEKL; (SEQ ID NO: 18) GRKKRRQRRRPQRWEKISIINFEKLYKLRWEKISIINFEKL; (SEQ ID NO: 19) LEQLESIINFEKLTEWRVRRALISC-cholesterol; (SEQ ID NO: 20) cholesterol-CRVRRALISLEQLESIINFEKLTEW; (SEQ ID NO: 21) cholesterol-CSIINFEKL; (SEQ ID NO: 22) cholesterol-CRWEKISIINFEKL; (SEQ ID NO: 23) cholesterol-CRWEKISVYDFFVWLYKLRWEKISIINFEKL; (SEQ ID NO: 24) GRKKRRQRRRPQRVRRALISLEQLESIINFEKLTEW-FITC; (SEQ ID NO: 25) RQIKIWFQNRRMKWKKRWEKISIINFEKLYKLK-FITC; (SEQ ID NO: 26) KLALKLALKALKAALKLARWEKISIINFEKLYKLK-FITC; (SEQ ID NO: 27) RRRRRRRRRRWEKISIINFEKLYKLK-FITC; (SEQ ID NO: 28) FITC -RWEKISIINFEKLYKLRRRRRRRRR; (SEQ ID NO: 29) FITC-RWEKISIINFEKLYKLKETWWETWWTEWSQPKKKRKV; (SEQ ID NO: 30) FITC-RWEKISIINFEKLYKLAGYLLGKINLKALAALAKKIL and (SEQ ID NO: 31) GLWRALWRLLRSLWRLLWRARWEKISIINFEKLYKLK-FITC.
15. The modified enveloped virus according to claim 1 wherein there is provided a combination of different non-genetically modified enveloped viruses selected from the group consisting of Herpes Simplex Virus 1 (HSV-1), Herpes Simplex Virus 2 (HSV-2), Vaccinia, Vesicular stomatitis Indiana virus (VSV), Measles Virus (MeV), Maraba virus and New Castle Disease (NDV) virus.
16. The modified enveloped virus according to claim 15 wherein said combination comprises any 2, 3, 4, 5, 6 or 7 of the afore viruses modified to comprise at least one anti-tumor, tumor-specific peptide non-genetically attached to or inserted in/through the viral envelope of said virus.
17. A pharmaceutical composition comprising: a modified enveloped virus according to claim 1 and a suitable carrier.
18. A method for treating a cancer comprising exposing an individual to a modified enveloped virus selected from the group consisting of Herpes Simplex Virus 1 (HSV-1), Herpes Simplex Virus 2 (HSV-2), Vaccinia, Vesicular stomatitis Indiana virus (VSV), Measles Virus (MeV), Maraba virus and New Castle Disease (NDV) virus wherein said virus has at least one anti-tumor, tumor-specific peptide non-genetically attached to or inserted in/through the viral envelope, further wherein the peptide has a length selected from the group consisting of: 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49 and 50 amino acids.
19. The method according to claim 18 wherein said method further comprises, after a selected period, exposing said individual to another modified enveloped virus selected from the group consisting of Herpes Simplex Virus 1 (HSV-1), Herpes Simplex Virus 2 (HSV-2), Vaccinia, Vesicular stomatitis Indiana virus (VSV), Measles Virus (MeV), Maraba virus and New Castle Disease (NDV) virus wherein said virus has said at least one anti-tumor, tumor-specific peptide non-genetically attached to or inserted in/through the viral envelope and further wherein said virus is different from the one used for the prior exposure.
20. The method according to claim 19 wherein said another modified enveloped virus is coated with the same or a majority of the same said peptides as the first modified enveloped virus.
21. The method according to claim 18 wherein after exposure to said one or more virus(es) said individual is further exposed to a checkpoint inhibitor.
22. A method for treating a cancer comprising exposing an individual to a modified virus that expresses at least one anti-tumor, tumor-specific peptide having a length selected from the group consisting of: 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49 and 50 amino acids and then, after a selected period, exposing said individual to an enveloped virus selected from the group consisting of Herpes Simplex Virus 1 (HSV-1), Herpes Simplex Virus 2 (HSV-2), Vaccinia, Vesicular stomatitis Indiana virus (VSV), Measles Virus (MeV), Maraba virus and New Castle Disease (NDV) virus wherein said virus has the same or a majority of the same of said peptide(s) non-genetically attached to or inserted in/through the viral envelope.
23. The method according to claim 22 wherein either after exposing an individual to a modified virus that expresses at least one anti-tumor, tumor-specific peptide or after exposing said individual to an enveloped virus selected from the group consisting of Herpes Simplex Virus 1 (HSV-1), Herpes Simplex Virus 2 (HSV-2), Vaccinia, Vesicular stomatitis Indiana virus (VSV), Measles Virus (MeV), Maraba virus and New Castle Disease (NDV) virus wherein said virus has the same or a majority of the same of said peptide(s) non-genetically attached to or inserted in/through the viral envelope, exposing said individual to a checkpoint inhibitor.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1) An embodiment of the present invention will now be described by way of example only with reference to the following wherein:
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DETAILED DESCRIPTION
(15) Materials and Methods:
(16) Peptides:
(17) Peptides used in this study are listed below and were all purchased from PepScan:
(18) TABLE-US-00002 CPP peptides: (SEQ ID NO: 8) GRKKRRQRRRPQRVRRALISLEQLESIINFEKLTEW (SEQ ID NO: 24) GRKKRRQRRRPQRVRRALISLEQLESIINFEKLTEW-FITC (SEQ ID NO: 25) RQIKIWFQNRRMKWKKRWEKISIINFEKLYKLK-FITC (SEQ ID NO: 26) KLALKLALKALKAALKLARWEKISIINFEKLYKLK-FITC (SEQ ID NO: 27) RRRRRRRRRRWEKISIINFEKLYKLK-FITC (SEQ ID NO: 28) FITC -RWEKISIINFEKLYKLRRRRRRRRR (SEQ ID NO: 29) FITC-RWEKISIINFEKLYKLKETWWETWWTEWSQPKKKRKV (SEQ ID NO: 30) FITC-RWEKISIINFEKLYKLAGYLLGKINLKALAALAKKIL (SEQ ID NO: 31) GLWRALWRLLRSLWRLLWRARWEKISIINFEKLYKLK-FITC (SEQ ID NO: 17) GRKKRRQRRRPQRWEKISIINFEKL (SEQ ID NO: 18) GRKKRRQRRRPQRWEKISIINFEKLYKLRWEKISIINFEKL Cholesterol-conjugated peptides: (SEQ ID NO: 19) LEQLESIINFEKLTEWRVRRALISC-cholesterol (SEQ ID NO: 32) FITC-LEQLESIINFEKLTEWRVRRALISC-cholesterol (SEQ ID NO: 20) cholesterol-CRVRRALISLEQLESIINFEKLTEW (SEQ ID NO: 33) cholesterol-CRVRRALISLEQLESIINFEKLTEW-FITC (SEQ ID NO: 21) cholesterol-CSIINFEKL (SEQ ID NO: 22) cholesterol-CRWEKISIINFEKL (SEQ ID NO: 23) cholesterol-CRWEKISVYDFFVWLYKLRWEKISIINFEKL
(19) Cell Lines
(20) Human lung carcinoma cell line A549, African Green monkey kidney epithelial cell line Vero (B) and Murine melanoma cell lines B16/OVA and B16-F10 were cultured in DMEM with 10% foetal calf serum (FBS) (Life Technologies) 1% L-glutamine and 1% penicillin/streptomycin at 37° C./5% CO2. Human triple negative breast cancer cell line MDMBA436 was cultured in RPMI with 10% foetal calf serum (FBS) (Life Technologies) 1% L-glutamine and 1% penicillin/streptomycin at 37° C./5% CO2.
(21) Production of Viruses
(22) Herpes simplex virus 1 was produced in Vero cells and purified with sucrose gradient ultracentrifugation and eluted in 20 mM MES, 100 mM NaCl, 30 mM Tris-HCl (pH 7.2). Western reserve strain of Vaccinia virus (VVDD-mDAI-RFP) was produced in A549 cells and purified through 36% sucrose cushion ultracentrifugation and eluted in 1 mM Tris (pH 9.0).
(23) ELISAs
(24) 2.5×107 Vaccinia virus particles were complexed with Bug of either CPP-peptide-FITC or cholesterol-conjugated peptide-FITC in 100 ul of DMEM for 15 min at 37° C. After complexation, unbound peptides were removed by ultracentrifugation (20.000 g, 40-80 mins) through 36% sucrose cushion in 1 mM Tris (pH 9.0). For ELISA, anti-Vaccinia polyclonal antibody (Abcam) was coated o/n at 4° C. into maxisorb 96-well immunoplates at the concentration of 2 ug/ml. Vaccinia-peptide complexes were incubated for 30-60 min at 37° C. or RT and washed with 1×PBS for three times. Complexes were detected with anti-FITC antibody conjugated to horseradish peroxidase (Abcam) (1:5000 dilution in 2% BSA-PBS). 2.5×107 Herpes simplex 1 virus particles were complexed with Bug of either CPP-peptide-FITC or cholesterol-conjugated peptide-FITC in 100 ul of DMEM for 15 min at 37° C. For ELISA, anti-HSV-1 polyclonal antibody (Abcam) was coated o/n at 4° C. into maxisorb 96-well immunoplates at the concentration of 2 ug/ml. HSV-1-peptide complexes were incubated for 30-60 min at 37° C. or RT and washed with 1×PBS for three times. Complexes were detected with anti-FITC antibody conjugated to horseradish peroxidase (Abcam) (1:5000 dilution in 2% BSA-PBS).
(25) Flow Cytometry
(26) 5×107 Vaccinia virus particles were complexed with 24 ug of either CPP-peptide-FITC or cholesterol-conjugated peptide-FITC in 200 ul of DMEM for 15 min at 37° C. After complexation, unbound peptides were removed by ultracentrifugation (20.000 g, 40-80 mins) through 36% sucrose cushion in 1 mM Tris (pH 9.0) and eluted to 2% Formalin in PBS. After fixing, formalin was removed with another ultracentrifugation (20.000 g, 40-80 mins) through 36% sucrose cushion and pellet was eluted to 1× ultrapure PBS (Gibco). Flow cytometry was performed with Apogee A50 Micro Flow Cytometer (Apogee) and FITC detection was used for assessing the complexes.
(27) Cross-Presentation Experiments
(28) 2×106 spleenocytes in 800 μL of 10% RPMI-1640 culture media were incubated with 200 μL of GRKKRRQRRRPQRVRRALISLEQLESIINFEKLTEW (SEQ ID NO: 8), LEQLESIINFEKLTEWRVRRALISC-cholesterol (SEQ ID NO: 19) or cholesterol-CRVRRALISLEQLESIINFEKLTEW (SEQ ID NO: 20) peptide dilution (0.19 μg/μL).
(29) The vaccinia-peptide complexes were prepared as described for ELISAs. After 2 h of incubation cells were washed and stained with either APC anti-mouse H-2Kb bound to SIINFEKL or APC Mouse IgG1, κ Isotype Ctrl (BioLegend, San Diego, Calif., USA), and the samples were analyzed by flow cytometry.
(30) Cell Viability Assay
(31) Cell viability was measured using the CellTiterGlo 96 AQueous One Solution Cell Proliferation Assay (Promega), and a multi-well plate reader (Varioscan; ThermoLabsystems) to determine the luminescence of the samples.
(32) Surface Plasmon Resonance
(33) Measurements were performed using a multi-parametric SPR Navi™ 220A instrument (Bionavis Ltd, Tampere, Finland). Phosphate buffered saline (PBS) (pH 7.4) was used as a running buffer. A constant flow rate of 20 μL/min was used throughout the experiments, and temperature was set to +20° C. Laser light with a wavelength of 670 nm was used for surface plasmon excitation.
(34) A sensor slide with a silicon dioxide surface was activated by 5 min of plasma treatment followed by coating with APTES ((3-aminopropyl)triethoxysilane) by incubating the sensor in 50 mM APTES in isopropanol for 4 h. The sensor was then washed and placed into the SPR device, and viruses were immobilized in situ on the sensor surface of the two test channels by injecting 1.1×10.sup.7 pfu of VACV in PBS (pH 7.4) for approximately 12 min, followed by a 3-min wash with PBS. CPP-containing anti-tumor peptide or peptide without CPP sequence (non-interacting control) was then injected into both flow channels of the flow cell in parallel, with increasing peptide concentrations ranging from 1.23 uM to 100 uM.
(35) Animal Experiments
(36) C57BL/6JOIaHsd-mouse strain was used in all animal experiment. 350000 B16-OVA-cells were injected in the right flank of mice (in rechallence experiment, cells were injected in to the left flank) and when the tumor size reached approximately 50 mm.sup.3 (10-12 days after injection) mice were treated with non-modified viruses, PeptiENV-platform, peptides only or injection media only (Mock). Mice were treated on day 0, 2 and then a booster treatment was given on day 8-10. Tumors were measured every second day until the tumor size reached the maximum allowed.