TESTING FOR PARTICULATES
20210102876 · 2021-04-08
Assignee
Inventors
- Lazar Fruchter (Efrat, IL)
- Arie Oscar Holtz (Jerusalem, IL)
- Robert Eric Levitz (Beit Shemesh, IL)
- Leah FORGOSH (West Hartford, CT, US)
- Boaz Arieli (Mavaseret Tzion, IL)
- Zvi FELDMAN (Sde Zvi, IL)
- Maoz COHEN (Bat Yam, IL)
- Michael Librus (Netany, IL)
- Avihu Izhak SIVAN (Petach Tikvah, IL)
- Raz SILBERMAN (Holon, IL)
Cpc classification
C12Q1/24
CHEMISTRY; METALLURGY
B01L2200/0684
PERFORMING OPERATIONS; TRANSPORTING
B01L2400/0683
PERFORMING OPERATIONS; TRANSPORTING
G01N1/4077
PHYSICS
B01L3/5023
PERFORMING OPERATIONS; TRANSPORTING
International classification
Abstract
A method is provided that includes collecting, from a patient, gargled fluid that potentially contains a particulate selected from the group consisting of: a bacterium and a virus; passing the gargled fluid through a filter; and subsequently, testing for the presence of the particulate trapped by the filter. Other embodiments are also described.
Claims
1. A method comprising: collecting, from a patient, gargled fluid that potentially contains a particulate selected from the group consisting of: a bacterium and a virus; passing the gargled fluid through a filter; and subsequently, testing for the presence of the particulate trapped by the filter.
2. The method according to claim 1, wherein testing for the presence of the particulate trapped by the filter comprises testing the filter for the presence of the particulate.
3. The method according to claim 1, wherein the particulate is the bacterium, and wherein testing for the presence of the particulate trapped by the filter comprises testing for the presence of the bacterium trapped by the filter.
4. The method according to claim 3, wherein the particulate is Streptococcus bacterium, and wherein testing for the presence of the particulate trapped by the filter comprises testing for the presence of the Streptococcus bacterium trapped by the filter.
5. The method according to claim 4, wherein testing for the presence of the Streptococcus bacterium trapped by the filter comprises testing the filter for the presence of the Streptococcus bacterium.
6. The method according to claim 4, wherein testing for the presence of the Streptococcus bacterium trapped by the filter comprises testing for the presence of Streptococcus antigen trapped by the filter.
7. The method according to claim 6, wherein testing for the presence of the Streptococcus antigen trapped by the filter comprises adding a detergent to the gargled fluid.
8. The method according to claim 7, wherein adding the detergent to the gargled fluid comprises adding polysorbate to the gargled fluid.
9. The method according to claim 6, wherein testing for the presence of the Streptococcus antigen trapped by the filter comprises performing a rapid strep test using a dipstick.
10. The method according to claim 9, wherein performing the rapid strep test comprises performing the rapid strep test without first culturing the gargled fluid.
11. The method according to claim 9, wherein the dipstick is a lateral flow immunoassay test strip.
12. The method according to claim 6, wherein testing for the presence of the Streptococcus antigen trapped by the filter comprises applying, to the filter, an extraction solution configured to extract the Streptococcus antigen from the Streptococcus bacterium.
13. The method according to claim 12, wherein the extraction solution is configured to extract Strep A carbohydrate antigen from the Streptococcus bacterium, and wherein testing for the presence of the Streptococcus antigen trapped by the filter comprises testing for the presence of the Strep A carbohydrate antigen trapped by the filter.
14. The method according to claim 12, wherein testing for the presence of the Streptococcus bacterium trapped by the filter further comprises increasing a surface area of the filter that is exposed to the extraction solution before testing for the presence of the Streptococcus antigen trapped by the filter.
15. The method according to claim 12, wherein testing for the presence of the Streptococcus bacterium trapped by the filter further comprises mixing the filter after applying the extraction solution to the filter.
16. The method according to claim 1, wherein the particulate is the virus, and wherein testing for the presence of the particulate trapped by the filter comprises testing for the presence of the virus trapped by the filter.
17. The method according to claim 1, wherein testing for the presence of the particulate trapped by the filter further comprises tearing the filter before testing for the presence of the particulate trapped by the filter.
18. The method according to claim 1, further comprising puncturing the filter before testing for the presence of the particulate trapped by the filter.
19. The method according to claim 1, wherein testing for the presence of the particulate trapped by the filter further comprises crushing the filter before testing for the presence of the particulate trapped by the filter.
20. The method according to claim 1, wherein testing for the presence of the particulate trapped by the filter further comprises concentrating the filter into a more compact volume before testing for the presence of the particulate trapped by the filter.
21. The method according to claim 1, wherein collecting the gargled fluid comprises collecting a gargle fluid that the patient has gargled in his or her mouth and spit out, and wherein the gargle fluid includes a detergent.
22. The method according to claim 21, wherein the detergent includes polysorbate.
23. The method according to claim 1, wherein passing the gargled fluid through the filter comprises pushing the gargled fluid through the filter.
24. The method according to claim 1, further comprising, before passing the gargled fluid through the filter, culturing the particulate using a culture medium.
25. The method according to claim 1, further comprising, before passing the gargled fluid through the filter, preserving the particulate using a preserving medium.
26. The method according to claim 1, wherein passing the gargled fluid through the filter comprises passing the gargled fluid through the filter such that adhesive properties of the filter facilitate trapping of the particulate by the filter.
27. The method according to claim 1, wherein passing the gargled fluid through the filter comprises passing the gargled fluid through the filter such that the filter traps mucus.
28. The method according to claim 27, passing the gargled fluid through the filter comprises passing the gargled fluid through the filter such that the mucus adheres to the filter.
29. The method according to claim 1, wherein the filter includes first and second filters, and wherein passing the gargled fluid through the filter comprises passing the gargled fluid through the first and the second filters.
30. The method according to claim 29, wherein testing for the presence of the particulate comprises testing for the presence of the particulate captured by the first filter.
31. The method according to claim 30, wherein testing for the presence of the particulate comprises testing for the presence of the particulate captured by the first filter and testing for the presence of the particulate captured by the second filter.
32. The method according to claim 30, wherein the particulate is the bacterium, and wherein testing for the presence of the particulate comprises testing for the presence of the bacterium captured by the first filter, and wherein the method further comprises testing for the presence of a virus captured by the second filter.
33. The method according to claim 29, wherein passing the gargled fluid through the first and the second filters comprises passing the gargled fluid through the first and the second filters while the first filter is disposed within a tube.
34. The method according to claim 33, wherein passing the gargled fluid through the first and the second filters comprises advancing a plunger within the tube.
35. The method according to claim 29, wherein passing the gargled fluid through the first and the second filters comprises passing the gargled fluid through the first filter and then through the second filter, and wherein a pore size of the first filter is larger than a pore size of the second filter.
36. The method according to claim 35, wherein the pore size of the second filter is no more than 20 microns.
37. The method according to claim 36, wherein the pore size of the second filter is no more than 1 micron.
38. The method according to claim 37, wherein the pore size of the second filter is between 0.1 and 1 micron.
39. The method according to claim 37, wherein the pore size of the second filter is between 0.01 0.3 micron.
40. The method according to claim 35, wherein the pore size of the first filter is between 0.5 and 100 microns.
41. The method according to claim 40, wherein the pore size of the first filter is between 10 and 100 microns.
42. A kit for testing gargled fluid for the presence of a particulate selected from the group consisting of: a bacterium and a virus, the kit comprising: a filtering apparatus, which comprises: a tube having a proximal opening; a first filter disposed within the tube, the first filter having a pore size of between 0.5 and 100 microns; and a second filter having a pore size of no more than 20 microns, and less than the pore size of the first filter, wherein the second filter is disposed distally to the first filter, such that the gargled fluid, when in the tube, passes through the first filter and then through the second filter; and a lateral flow immunoassay test strip, which is configured to detect the presence of the particulate.
43. The kit according to claim 42, wherein the second filter has a pore size of no more than 1 micron.
44. The kit according to claim 42, wherein the second filter has a pore size of between 0.1 and 20 microns.
45. The kit according to claim 44, wherein the second filter has a pore size of between 0.1 microns and 1 micron.
46. The kit according to claim 44, wherein the second filter has a pore size of between 0.01 microns and 0.3 micron.
47. The kit according to claim 44, wherein the second filter has a pore size of between 1 micron and 10 microns.
48. The kit according to claim 42, wherein the first filter has a pore size of between 0.5 and 20 microns.
49. The kit according to claim 42, wherein the first filter has a pore size of between and 100 microns.
50. The kit according to claim 42, wherein the first filter has a pore size of between and 25 microns.
51. The kit according to claim 42, wherein the filtering apparatus further comprises a fluid-collection compartment distal to the first and the second filters.
52. The kit according to claim 51, wherein a wall of the fluid-collection compartment is shaped so as to define a pressure-release hole, such that air pressure in the fluid-collection compartment is released through the pressure-release hole.
53. The kit according to claim 42, wherein the filtering apparatus further comprises a plunger sized and shaped to be distally advanceable through the proximal opening of the tube and within the tube.
54. The kit according to claim 42, wherein the second filter is disposed within the tube.
55. A kit for testing gargled fluid for the presence of a particulate selected from the group consisting of: a bacterium and a virus, the kit comprising: a filtering apparatus, which comprises: a tube having a proximal opening; a first filter disposed within the tube, the first filter having a pore size of between 0.5 and 100 microns; and a second filter having a pore size of no more than 20 microns, and less than the pore size of the first filter, wherein the second filter is disposed distally to the first filter, such that the gargled fluid, when in the tube, passes through the first filter and then through the second filter; a vial; and a liquid for bathing the particulate in the vial, the liquid selected from the group consisting of: a lysis buffer, saline solution, and transport medium.
56. The kit according to claim 55, wherein the first filter has a pore size of between 0.5 and 20 microns.
57. The kit according to claim 55, wherein the first filter has a pore size of between and 100 microns.
58. The kit according to claim 55, wherein the vial contains the liquid.
59. Apparatus comprising a testing device for testing for the presence of particulate in a liquid, the testing device comprising: a liquid container for containing the liquid; a filter, disposed in or downstream of the liquid container; a liquid-pressure source, which is arranged to apply pressure to drive the liquid contained in the liquid container through the filter; and a filter chamber that is (a) disposed downstream of the liquid container, (b) shaped so as to define an inlet, and (c) in fluid communication with the filter.
60. The apparatus according to claim 59, wherein the inlet of the filter chamber has an inlet area that is less than a greatest cross-sectional area of the filter chamber, the inlet area and the greatest cross-sectional area measured in respective planes parallel to each other.
61. The apparatus according to claim 59, wherein the filter chamber comprises one or more pressure-activated valves, not disposed at the inlet of the filter chamber.
62. The apparatus according to claim 59, wherein the filter is configured to trap at least 40% of the particulate to be tested and allow passage of the liquid.
63. The apparatus according to any one of claims 59-62, wherein the filter is removably disposed upstream of the filter chamber with the filter partially covering the inlet of the filter chamber.
64. The apparatus according to claim 63, wherein the apparatus further comprises an elongate member configured to push at least a portion of the filter into the filter chamber.
65. The apparatus according to claim 63, wherein the liquid-pressure source comprises a plunger, which comprises a plunger head that is shaped so as to be insertable into the liquid container, and wherein the plunger head is configured to push at least a portion of the filter into the filter chamber.
66. The apparatus according to claim 63, wherein the filter chamber comprises one or more valves, not disposed at the inlet of the filter chamber.
67. The apparatus according to claim 66, wherein the one or more valves comprise one or more pressure-activated valves.
68. The apparatus according to claim 67, wherein the one or more valves comprise one or more non-pressure-activated valves.
69. The apparatus according to claim 66, wherein the liquid container is shaped so as to define one or more openings through a wall of the liquid container, wherein the one or more openings are downstream of the filter when the filter is removably disposed upstream of the filter chamber with the filter partially covering the inlet of the filter chamber, and wherein the filter chamber is not disposed so as to receive the liquid that is driven through the one or more openings.
70. The apparatus according to any one of claims 59-62, wherein the apparatus further comprises at least one container comprising an extraction reagent.
71. The apparatus according to claim 70, wherein the apparatus further comprises a test strip.
72. A method comprising: applying pressure to drive liquid contained in a liquid container of a testing device through a filter of the testing device, wherein the filter is disposed in or downstream of the liquid container, and wherein the liquid includes at least one substance selected from the group of substances consisting of gargled fluid, saliva not swabbed from a throat of a patient, and an incubated culture medium containing a biological sample; and thereafter, testing, within a filter chamber of the testing device, for the presence of particulate trapped by the filter while the filter is disposed at least partially in the filter chamber, wherein the filter chamber is (a) disposed downstream of the liquid container, (b) shaped so as to define an inlet, and (c) in fluid communication with the filter.
73. The method according to claim 72, wherein testing comprises applying an extraction reagent to the filter while the filter is in the filter chamber.
74. The method according to claim 72, wherein applying the pressure comprises applying positive pressure using a positive-pressure pump disposed upstream of the filter.
75. A method comprising: applying pressure to drive liquid contained in a liquid container of a testing device (a) through a filter of the testing device and (b) then through one or more valves of the testing device, wherein the filter is disposed in or downstream of the liquid container, wherein the one or more valves are disposed downstream of the filter, and wherein the liquid includes at least one substance selected from the group of substances consisting of gargled fluid, saliva not swabbed from a throat of a patient, and an incubated culture medium containing a biological sample; and thereafter, testing, within the testing device, for the presence of particulate trapped by the filter while the one or more valves are closed and the filter is disposed in the testing device.
76. The method according to claim 75, wherein testing comprises applying an extraction reagent to the filter.
77. The method according to claim 76, wherein testing further comprises after applying the extraction reagent, inserting a test strip into the testing device and examining the test strip to test for the presence of the particulate.
78. The method according to claim 75, wherein the liquid includes the saliva not swabbed from the throat of the patient.
79. The method according to claim 75, wherein the one or more valves include one or more pressure-activated valves.
80. The method according to claim 75, wherein the one or more valves include one or more non-pressure-activated valves.
81. The method according to claim 80, wherein the testing device is configured to automatically close the one or more non-pressure-activated valves after the pressure is applied to drive the liquid through the filter and then through the one or more non-pressure-activated valves.
82. The method according to claim 80, wherein the one or more non-pressure-activated valves include two discs that are shaped so as to define respective sets of openings, and wherein the one or more non-pressure-activated valves are configured to assume open and closed states when the two sets of openings are aligned and non-aligned with each other.
83. The method according to claim 80, wherein applying the pressure comprises pushing a plunger including a plunger head inserted into the liquid container, and wherein the testing device is configured to automatically close the one or more non-pressure-activated valves after the plunger applies the pressure to drive the liquid contained in the liquid container through the filter and then through the one or more non-pressure-activated valves.
84. The method according to claim 83, wherein the testing device is configured such that motion of the plunger automatically closes the one or more non-pressure-activated valves after the plunger applies the pressure to drive the liquid contained in the liquid container through the filter and then through the one or more non-pressure-activated valves.
85. The method according to claim 84, wherein pushing the plunger comprise rotating the plunger, and wherein the testing device is configured such that rotational motion of the plunger automatically closes the one or more non-pressure-activated valves after the plunger applies the pressure to drive the liquid contained in the liquid container through the filter and then through the one or more non-pressure-activated valves.
86. The method according to claim 85, wherein the plunger is shaped so as to define one or more plunger threads, and wherein an internal wall of the liquid container is shaped so as to define one or more liquid-container threads that engage the one or more plunger threads such that rotation of the plunger advances the plunger in a downstream direction within the liquid container.
87. The method according to claim 85, wherein the one or more non-pressure-activated valves comprise two discs that are shaped so as to define respective sets of openings, and wherein the one or more non-pressure-activated valves are configured to assume open and closed states when the two sets of openings are aligned and non-aligned with each other, wherein pushing the plunger comprise rotating the plunger, and wherein the testing device is configured such that rotational motion of the plunger automatically closes the one or more non-pressure-activated valves by rotating at least one of the two discs with respect to the other of the discs, after the plunger applies the pressure to drive the liquid contained in the liquid container through the filter and then through the one or more non-pressure-activated valves.
88. The method according to claim 75, wherein the testing device further includes a filter chamber that is (a) disposed downstream of the liquid container, (b) shaped so as to define an inlet, and (c) in fluid communication with filter.
89. The method according to claim 88, wherein the filter chamber includes at least one of the one or more valves, not disposed at the inlet of the filter chamber.
90. The method according to claim 88, wherein applying the pressure comprises applying the pressure while the filter is removably disposed upstream of the filter chamber with the filter partially covering the inlet of the filter chamber.
91. The method according to claim 90, wherein the method further comprises, after applying the pressure and before testing for the presence of the particulate trapped by the filter, pushing at least a portion of the filter into the filter chamber.
92. The method according to claim 88, wherein the filter chamber includes at least one of the one or more valves, not disposed at the inlet of the filter chamber.
93. The method according to claim 92, wherein the liquid container is shaped so as to define one or more openings through a wall of the liquid container, wherein the one or more openings are downstream of the filter when the filter is removably disposed upstream of the filter chamber with the filter partially covering the inlet of the filter chamber, wherein the filter chamber is not disposed so as to receive the liquid that is driven through the one or more openings, and wherein applying the pressure comprises applying the pressure to drive the liquid (i) partially through (a) the filter and (b) one or more of the one or more valves of the testing device and (ii) partially through the one or more openings.
94. The method according to claim 75, wherein the filter is configured to trap at least 40% of the particulate.
95. The method according to claim 75, wherein the particulate comprises biological particulate.
96. The method according to claim 95, wherein the biological particulate is selected from the group consisting of: a microorganism, a fungus, a bacterium, a spore, a virus, a mite, a biological cell, a biological antigen, a protein, a protein antigen, and a carbohydrate antigen.
97. The method according to claim 75, wherein testing for the presence of the particulate comprises applying an extraction reagent to the filter after applying the pressure.
98. The method according to claim 97, wherein testing for the presence of the particulate comprises using a test strip.
99. Apparatus comprising a testing device for testing for the presence of particulate in a liquid, the testing device comprising: a liquid container for containing the liquid, the liquid container shaped so as to define upstream and downstream openings; a filter, removably disposed in the liquid container; and a plunger head that (a) is shaped so as to be insertable into the liquid container so as to form a movable seal with a wall of the liquid container, and (b) is arranged such that when pushed, the plunger head applies pressure to drive the liquid contained in the liquid container through the filter and then through the downstream opening, wherein the testing device is configured such that rotation of the plunger head radially compresses the filter toward a central longitudinal axis of the plunger head.
100. The apparatus according to claim 99, wherein the testing device is configured such that the rotation of the plunger head crushes the filter.
101. A method comprising: inserting a plunger head into a liquid container of a testing device so as to form a movable seal with a wall of the liquid container; pushing the plunger head to apply pressure to drive liquid contained in the liquid container through a filter of the testing device and then through a downstream opening of the liquid container, which also has an upstream opening, wherein the filter is removably disposed in the liquid container; and rotating the plunger head to radially crush the filter toward a central longitudinal axis of the plunger head.
102. The method according to claim 101, further comprising, after rotating the plunger head, testing the filter for the presence of particulate trapped by the filter.
103. The method according to claim 101, wherein rotating the plunger head crushes the filter.
104. The method according to claim 103, wherein the plunger head includes a protrusion, and wherein rotating the plunger head causes the protrusion to move radially toward the central longitudinal axis of the plunger head.
105. Apparatus comprising a testing device for testing for the presence of particulate in a liquid, the testing device comprising: a liquid container for containing the liquid, wherein the liquid container has an internal volume of between 0.5 and 500 ml; one or more valves; a filter, disposed in or downstream of the liquid container and upstream of the one or more valves; and a plunger, which (a) comprises a plunger head that is shaped so as to be insertable into the liquid container, and (b) is arranged to apply pressure to drive the liquid contained in the liquid container through the filter and then through the one or more valves.
106. The apparatus according to claim 105, wherein the one or more valves comprise one or more pressure-activated valves.
107. The apparatus according to claim 105, wherein the one or more valves comprise one or more non-pressure-activated valves.
108. The apparatus according to claim 107, wherein the one or more non-pressure-activated valves comprise two discs that are shaped so as to define respective sets of openings, and wherein the one or more non-pressure-activated valves are configured to assume open and closed states when the two sets of openings are aligned and non-aligned with each other.
109. The apparatus according to claim 107, wherein the testing device is configured to automatically close the one or more non-pressure-activated valves after the plunger applies the pressure to drive the liquid contained in the liquid container through the filter and then through the one or more non-pressure-activated valves.
110. The apparatus according to claim 109, wherein the testing device is configured such that motion of the plunger automatically closes the one or more non-pressure-activated valves after the plunger applies the pressure to drive the liquid contained in the liquid container through the filter and then through the one or more non-pressure-activated valves.
111. The apparatus according to claim 110, wherein the testing device is configured such that rotational motion of the plunger automatically closes the one or more non-pressure-activated valves after the plunger applies the pressure to drive the liquid contained in the liquid container through the filter and then through the one or more non-pressure-activated valves.
112. The apparatus according to claim 111, wherein the plunger is shaped so as to define one or more plunger threads, and wherein an internal wall of the liquid container is shaped so as to define one or more liquid-container threads that engage the one or more plunger threads such that rotation of the plunger advances the plunger in a downstream direction within the liquid container.
113. The apparatus according to claim 111, wherein the one or more non-pressure-activated valves comprise two discs that are shaped so as to define respective sets of openings, and wherein the one or more non-pressure-activated valves are configured to assume open and closed states when the two sets of openings are aligned and non-aligned with each other, and wherein the testing device is configured such that rotational motion of the plunger automatically closes the one or more non-pressure-activated valves by rotating at least one of the two discs with respect to the other of the discs, after the plunger applies the pressure to drive the liquid contained in the liquid container through the filter and then through the one or more non-pressure-activated valves.
114. The apparatus according to claim 105, wherein the filter has a filter surface area of an upstream side of the filter that equals between 0.3 and 100 cm2.
115. The apparatus according to claim 114, wherein the filter surface area equals between 0.3 and 30 cm2.
116. The apparatus according to claim 105, wherein the filter is configured to trap at least 40% of the particulate to be tested and allow passage of the liquid.
117. The apparatus according to any one of claims 105-116, wherein the testing device further comprises a filter chamber that is (a) disposed downstream of the liquid container, (b) shaped so as to define an inlet, and (c) in fluid communication with the filter.
118. The apparatus according to claim 117, wherein the filter chamber comprises at least one of the one or more valves, not disposed at the inlet of the filter chamber.
119. The apparatus according to claim 117, wherein the filter is removably disposed upstream of the filter chamber with the filter partially covering the inlet of the filter chamber.
120. The apparatus according to claim 119, wherein the testing device further comprises a support for the filter, disposed at least partially between the inlet of the filter chamber and the filter.
121. The apparatus according to claim 119, wherein the apparatus further comprises an elongate member configured to push at least a portion of the filter into the filter chamber.
122. The apparatus according to any one of claims 105-116, wherein the one or more valves are one or more first valves, and wherein the testing device further comprises one or more second pressure relief valves, which are in fluid communication with the liquid container and are disposed upstream of the filter.
123. The apparatus according to any one of claims 105-116, wherein the apparatus further comprises at least one container containing an extraction reagent.
124. The apparatus according to claim 123, wherein the apparatus further comprises a test strip.
125. Apparatus comprising a testing device for testing for the presence of particulate in a liquid, the testing device comprising: a liquid container for containing the liquid, wherein the liquid container has an internal volume of between 0.5 and 500 ml; one or more non-pressure-activated valves; a filter, disposed in or downstream of the liquid container and upstream of the one or more valves; and a liquid-pressure source, which is arranged to apply pressure to drive the liquid contained in the liquid container through the filter and then through the one or more valves, wherein the testing device is configured to automatically close the one or more non-pressure-activated valves after the liquid-pressure source applies the pressure to drive the liquid contained in the liquid container through the filter and then through the one or more non-pressure-activated valves.
126. The apparatus according to claim 125, wherein the testing device is configured such that motion of the liquid-pressure source automatically closes the one or more non-pressure-activated valves after the liquid-pressure source applies the pressure to drive the liquid contained in the liquid container through the filter and then through the one or more non-pressure-activated valves.
127. The apparatus according to claim 126, wherein the testing device is configured such that rotational motion of the liquid-pressure source automatically closes the one or more non-pressure-activated valves after the liquid-pressure source applies the pressure to drive the liquid contained in the liquid container through the filter and then through the one or more non-pressure-activated valves.
128. The apparatus according to claim 127, wherein the one or more non-pressure-activated valves comprise two discs that are shaped so as to define respective sets of openings, and wherein the one or more non-pressure-activated valves are configured to assume open and closed states when the two sets of openings are aligned and non-aligned with each other, and wherein the testing device is configured such that rotational motion of the liquid-pressure source automatically closes the one or more non-pressure-activated valves by rotating at least one of the two discs with respect to the other of the discs, after the liquid-pressure source applies the pressure to drive the liquid contained in the liquid container through the filter and then through the one or more non-pressure-activated valves.
129. A method comprising: incubating gargled fluid for between 12 and 75 hours in a container that contains a liquid growth medium, a dehydrated growth medium, or a gel growth medium; and thereafter, performing a strep test using a rapid strep test (RST) technique on the gargled fluid and growth medium.
130. The method according to claim 129, wherein performing the strep test using the RST technique comprises performing a lateral flow test.
131. The method according to claim 129, wherein performing the strep test using the RST technique comprises performing an RST technique selected from the group consisting of: an ELISA-based RST, an antibody-coated-beads-based RST, a nucleic-acid-based RST, and a fluorescent immunoassaying (FA) RST.
132. The method according to claim 129, wherein performing the strep test using the RST technique further comprises filtering the gargled fluid and the growth medium after incubating, and performing the strep test using the RST technique on the filter.
133. The method according to claim 132, wherein filtering the gargled fluid and the growth medium after incubating comprises: placing the gargled fluid and the growth medium in a liquid container of a testing device, and applying pressure to drive the gargled fluid and the growth medium contained in the liquid container (a) through a filter of the testing device and (b) then through one or more valves of the testing device, wherein the filter is disposed in or downstream of the liquid container, and wherein the one or more valves are disposed downstream of the filter.
134. A method for testing for the presence of particulate in gargled fluid, the method comprising: incubating the gargled fluid for between 12 and 75 hours in a container that contains a liquid growth medium, a dehydrated growth medium, or a gel growth medium; and thereafter, performing a test for the particulate using a rapid test technique on the gargled fluid and growth medium.
135. The method according to claim 134, wherein performing the test using the rapid test technique comprises performing a lateral flow test.
136. The method according to claim 134, wherein performing the test using the rapid test technique comprises performing a rapid test technique selected from the group consisting of an ELISA-based rapid test, an antibody-coated-beads-based rapid test, a nucleic-acid-based rapid test, and a fluorescent immunoassaying (FIA) rapid test.
137. A method for testing for the presence of particulate in gargled fluid, the method comprising: incubating the gargled fluid for between 12 and 75 hours in a container that contains a liquid growth medium, a dehydrated growth medium, or a gel growth medium; and thereafter, performing a lateral flow test for the particulate on the gargled fluid and growth medium.
138. The method according to claim 137, wherein the particulate is strep, and wherein performing the lateral flow test comprises performing the lateral flow test for the strep.
139. The method according to any one of claims 129, 134, and 79, wherein the container does not contain agar.
140. A method comprising: incubating saliva not swabbed from a patient's throat for between 12 and 75 hours in a container that contains a liquid growth medium, a dehydrated growth medium, or a gel growth medium; and thereafter, performing a strep test using a rapid strep test (RST) technique on the saliva and growth medium.
141. The method according to claim 140, wherein the saliva not swabbed from the throat of the patient is saliva spit by the patient.
142. The method according to claim 140, further comprising mixing the saliva with the growth medium before incubating.
143. The method according to claim 140, wherein performing the strep test using the RST technique comprises performing a lateral flow test.
144. The method according to claim 140, wherein performing the strep test using the RST technique comprises performing an RST technique selected from the group consisting of: an ELISA-based RST, an antibody-coated-beads-based RST, a nucleic-acid-based RST, and a fluorescent immunoassaying (FIA) RST.
145. The method according to claim 140, wherein incubating comprises: receiving, on an absorbent element, saliva from the patient's mouth; and thereafter, placing the absorbent element into the container that contains the liquid growth medium, dehydrated growth medium, or gel growth medium.
146. The method according to claim 145, wherein performing the strep test using the RST technique comprises performing the RST technique on the saliva and the growth medium while the saliva and the growth medium are in the container.
147. Apparatus comprising A testing kit for testing for the presence of particulate in a liquid, the testing kit comprising: a liquid container for containing the liquid, the liquid container shaped so as to define upstream and downstream openings; a filter, disposed in or downstream of the liquid container; and a plunger head that (a) is shaped so as to be insertable into the liquid container so as to form a movable seal with a wall of the liquid container, and (b) is arranged such that when pushed, the plunger head applies pressure to drive the liquid contained in the liquid container through the filter and then through the downstream opening, wherein the testing kit does not comprise a plunger shaft.
148. The apparatus according to claim 147, wherein the filter is configured to trap at least 40% of a particulate to be tested and allow passage of the liquid.
149. The apparatus according to claim 147, further comprising sterile packaging, in which at least the liquid container, plunger head, and the filter are removably disposed.
150. The apparatus according to claim 147, wherein the liquid container comprises a liquid-tight seal disposed downstream of the filter, and wherein the testing kit is arranged such that when the plunger head is pushed, the plunger head applies the pressure to break or open the seal and drive the liquid through the filter and then through the downstream opening.
151. A method comprising: receiving a testing kit including (a) a liquid container, the liquid container shaped so as to define upstream and downstream openings, (b) a filter, disposed in or downstream of the liquid container, (c) and a plunger head; coupling the plunger head to a plunger shaft; receiving a liquid in the liquid container; inserting the plunger head into the liquid container so as to form a movable seal with a wall of the liquid container; and using the plunger shaft, pushing the plunger head to apply pressure to drive the liquid contained in the liquid container through the filter and then through the downstream opening, wherein the testing kit does not include the plunger shaft.
152. The method according to claim 151, further comprising, after pushing the plunger head, testing for the presence of particulate trapped by the filter.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION OF APPLICATIONS
[0804] Reference is made to
[0805] Fluid that potentially contains the particulate is collected in the tube. Using the plunger, the fluid is pushed through a filter 26 disposed within a distal portion of the tube. (It is noted that in the context of the claims and specification of the present application, the term “proximal” refers to the top of the apparatus as depicted in
[0806] Types of fluid that may be collected in tube 22 include gargled fluid and/or biological fluid such as saliva. For example, a patient may gargle a saline fluid and subsequently spit the gargled fluid, perhaps along with some saliva, into the tube. (Alternatively, e.g., for juvenile patients who cannot gargle, saliva may be collected without any gargled fluid.) Other types of biological fluid that may be collected in tube 22 include blood (e.g., diluted blood), urine, stool (e.g., diluted stool), gastrointestinal (GI) fluid, and bronchoalveolar lavage fluid. Types of particulates that may be tested for include a microorganism (e.g., a parasite), a fungus, a bacteria, a spore (e.g., a pollen spore), a virus, a mite, a biological cell (e.g., a cancerous cell), a biological antigen, a protein, a protein antigen, and a carbohydrate antigen.
[0807] For example, using apparatus 20:
[0808] (a) Gargled fluid may be tested for presence of a streptococcus bacteria, as further described hereinbelow.
[0809] (b) Diluted blood may be tested for presence of an intracellular or extracellular pathogen (e.g. Plasmodium falciparum, a parasite causing malaria, or a blood-borne streptococcus bacteria), or cancerous cells.
[0810] (c) Urine may be tested for a urinary tract pathogen.
[0811] (d) Diluted stool may be tested for an enteric pathogen (e.g., salmonella).
[0812] (e) GI fluid (e.g., GI fluid obtained via a nasogastric or endoscopic tube) may be tested for a pathogen, e.g., giardia.
[0813] (f) Aspirated fluid may be tested for presence of cancerous cells.
[0814] Typically, the gargle fluid includes carbonated water, phosphate buffered saline, pelargonium sidoides extract, tannic acid, balloon flower platycodon grandiflorus, berberine sulfate, S-carboxymethylcysteine, curcumin, or any combination thereof. In some applications, the gargle fluid is carbonated. Typically, the temperature of the gargle fluid is 1-38 degrees Celsius.
[0815] Typically, a volume of the tube is at least 1 mL and/or less than 70 mL, e.g., between 1 and 8 mL, between 8 and 15 mL, between 15 and 30 mL, or between 30 and 70 mL. In some applications, the tube does not comprise a Luer lock or any other type of needle-coupling mechanism.
[0816] In some applications, the plunger and tube are shaped to provide an empty volume proximal to surface 21 of at least 0.03 and/or less than 5 mL (e.g., 0.03-1 mL) when the plunger is maximally advanced within the tube. For example, the distal end of the plunger may be shaped to define a distally-facing cavity 28 (e.g., a “dimple”) therein, cavity 28 providing at least part of the empty volume. The empty volume, which may be proximal and/or distal to the filter, facilitates the testing of the filter for the particulate, by providing a “testing area” in fluid continuity with the filter. For example, when conducting a rapid strep test, it is typically necessary to apply the A and B solution to the filter, i.e., place the A and B solution in contact with the filter, such that the strep A carbohydrate antigen may be drawn out from the trapped bacteria and into the solution. The empty volume provides an area in fluid continuity with the filter in which the A and B solution may collect, and into which the dipstick may be subsequently placed. Typically, a volume of the cavity is at least 0.03 mL and/or less than 5 mL (e.g., 0.03-1 mL). For example, the volume of the cavity may be at least 0.15 mL, e.g., at least 0.25 mL, e.g., at least 0.4 mL.
[0817] In some applications, apparatus 20 comprises a kit in which the plunger and tube are disposed. In some applications, the plunger is disposed entirely outside of the tube when contained in the kit, to allow for immediate use of the tube without first removing the plunger. In some applications, the kit further contains the particulate-presence-testing-facilitation solution (e.g., the A and B solution).
[0818] In some applications, apparatus 20 further comprises a puncturing element 30a protruding from a distal end of the plunger, puncturing element 30a being configured to puncture the filter upon the plunger being advanced to the filter. In other applications, a disconnected puncturing element 30b is disposed within the kit that contains the plunger and tube. Puncturing element 30b is sized and shaped to be passable through an opening 34 at a distal end of the tube, and is configured to puncture the filter by being longer than a distance d0 from opening 34 to the filter. (Typically, the puncturing element is at least as long as the distance from opening 34 to the proximal side of the filter.) The puncturing of the filter facilitates the testing, by allowing the particulate-presence-testing-facilitation solution, which is typically passed into the tube from the distal end of the tube (as further described hereinbelow), to collect in cavity 28. Furthermore, the puncturing of the filter facilitates collection of the particulate for subsequent culturing, such as, for example, when a throat culture is performed alternatively or additionally to the rapid strep test. Typically, the distal end of plunger 24 is not convex; rather, the distal end of the plunger is generally flat. For example, as shown in
[0819] Typically, the proximal end of the tube is shaped to define a funnel-shaped proximal opening 36, which facilitates the collection of fluid in the tube. For some applications, to facilitate easily depositing gargled fluid directly from a subject's mouth into tube 22, a proximal-most diameter D0 of funnel-shaped proximal opening 36 is at least 20%, e.g., at least 25%, e.g., at least 30%, e.g., at least 40%, e.g., at least 50%, greater than a diameter D6 of tube 22, and is typically less than 300° %, e.g., less than 250%, e.g., less than 200% greater than diameter D6 of tube 22. In some applications, the distal end of the tube is shaped to define a conduit 32, such as, for example, by comprising a Luer lock. Conduit 32 facilitates testing for presence of the particulate, as further described hereinbelow with reference to
[0820] Reference is now made to
[0821] In some applications, before testing the filter for presence of the particulate, a culture medium (e.g., tryptic soy broth) is used to culture the particulate, and/or a preserving medium is used to preserve the particulate in a viable or non-viable state. (For example, saline may be used to preserve the particulate in a viable state, while ethanol may be used to preserve the particulate in a non-viable state.) An advantage of culturing the particulate is that the testing sensitivity generally increases as the amount of particulate increases. An advantage of preserving the particulate is that the testing (e.g., a rapid strep test, or a throat culture to supplement the rapid strep test) may be performed even after some time has passed from the collection of the fluid.
[0822] In some applications, as noted above, apparatus 20 is used to test for presence of a microorganism, such as streptococcus bacteria. In such applications, the particulate-presence-testing-facilitation solution may include a releasing agent (e.g., the A and B solution), which, upon contacting the microorganism, releases an antigen from the microorganism. Subsequently, the area into which the antigen is released may be tested for presence of the antigen.
[0823] In some applications, the tube and plunger are configured such that, following the plunger being maximally advanced within the tube, the plunger is withdrawable from the tube only by use of a tool or by breaking a portion of the apparatus. For example, as shown in
[0824] In some applications, there is no locking mechanism, and plunger 24 can easily be removed from tube 22 subsequently to plunger 24 being maximally advanced.
[0825] Reference is again made to
[0826] Reference is now made to
[0827] Reference is now made to
[0828] Reference is now made to
[0829] As also shown in
[0830] Reference is now made to
[0831] The tube comprises a distal cylindrical portion 60, and/or a proximal funnel portion 62 coupled to cylindrical portion 60. Typically, the plunger is shaped to define a disk 58 that is proximal to compartments 56, disk 58 inhibiting passage of liquid from the compartments to a proximal side of the disk, when the disk is inside the tube. Length L0 of the plunger distal to disk 58 is approximately equal to (e.g., is within 10 mm of) the height H0 of the cylindrical portion. Thus, once the plunger has been maximally advanced within the tube, the fluid is trapped inside the tube, such the tube and plunger may be safely handled, e.g., turned upside-down (as shown in
[0832] Passageways 54 are typically many, well distributed, and/or large, to facilitate efficient passage of fluid therethrough. Typically, compartments 56 are not completely surrounded by a wall, such that air may escape the compartments while fluid flows in to the compartments. For example, each of the four compartments shown in
[0833] In an alternative application, air escapes through one or more passageways (not shown) leading from the compartments to the proximal end of the plunger. (The passageways are closed subsequent to the plunger being maximally advanced within the tube.)
[0834] Following the plunger being maximally advanced within the tube, the filter may be tested for presence of the particulate, e.g., as described hereinabove with reference to
[0835] Reference is now made to
[0836] Reference is now made to
[0837] Filter 26 is disposed within a distal portion of the tube, the medium being disposed distally and/or proximally to the filter. Following the collection of the fluid in the tube, the plunger is used to push the fluid through the filter and out of the tube. (Alternatively, apparatus 68 may be used in combination with apparatus and techniques described with reference to
[0838] In some applications, apparatus 68 further comprises a heating element 72 that is configured to heat the tube. For example, apparatus 68 may be contained in a kit in which heating element 72 and the tube are disposed. The heating element may comprise a chemical heating element (e.g., plaster and/or calcium chloride), and/or an electric heating element. The heating of the tube generally facilitates the culturing and/or preserving function of medium 70.
[0839] One manner in which apparatus 68 may be used will now be described. A subject at home experiences a sore throat, and decides that he would like to have a rapid strep test done. The subject therefore opens up his “home strep test kit” and pulls out the tube and plunger. The subject collects gargled fluid in the tube, uses the plunger as described hereinabove, and subsequently, brings the tube to the doctors office. From the time of collection until the subject arrives at the doctor's office, culture medium 70 (optionally, in combination with heat from heating element 72 and/or a heating medium) allows for the bacteria to multiply. At the doctor's office, the doctor conducts a rapid strep test. (Alternatively, the collection of fluid in the tube may be done at the doctor's office; in such cases, the doctor may optionally heat the tube for some time before performing the strep test, in order to boost the sensitivity of the strep test.)
[0840] Reference is again made to
[0841] In some applications, a method is provided that comprises testing for the presence of bacteria captured by the first filter, and testing for the presence of a virus captured by the second filter.
[0842] Filters 74a and 74b may also be disposed on the distal end of the plunger, e.g., in place of the single filter shown in
[0843] The pore sizes of filters 74a and 74b vary, depending on the type of particulate being tested for. For example:
[0844] (a) For streptococcus bacteria, typical pore sizes are between 0.5 and 20 microns for the first filter, and between 0.1 microns and 1 micron for the second filter.
[0845] (b) For pollen spores, typical pore sizes are between 10 and 100 microns for the first filter, and between 1 micron and 10 microns for the second filter.
[0846] (c) For monocytes, typical pore sizes are between 5 and 25 microns for the first filter, and between 1 micron and 20 microns for the second filter.
[0847] In some applications, a kit is provided that comprises apparatus 20 comprising first filter 74a and second filter 74b; a vial; and a liquid for bathing the particulate in the vial, the liquid selected from the group consisting of: a lysis buffer, saline solution (e.g., phosphate buffered saline (PBS)), and transport medium (e.g., universal transport medium or a viral transport medium). Optionally, the vial contains the liquid. The kit may be used, for example, for filtering gargled fluid and transporting the one or both of first filter 74a and second filter 74b to a remote laboratory in the liquid in the vial, such as for performing Polymerase Chain Reaction (PCR) testing for the particulate trapped by one or both of the filters.
[0848] Reference is now made to
[0849] In some applications, distal surface 90 of tube 22 is shaped to define a cone as is common in syringe plungers (configuration not shown).
[0850] Reference is now made to
[0851] Reference is now made to
[0852] Reference is now made to
[0853] Reference is now made to
[0854] However, once the particulate-presence-testing-facilitation solution is applied to filter 26, the particulate present on filter 26 can no longer be cultured. Therefore, in some applications, a sample is taken prior to applying the particulate-presence-testing-facilitation solution to filter 26. In some applications, plunger 24 is removed from tube 22 (
[0855] In some applications, the sample is taken by swabbing filter 26 with swab 144. Filter 26 may be swabbed through conduit 32 in distal end 100 of tube 22 (
[0856] In some applications, the sample taken from filter 26 is plated on a culture media surface and cultured (e.g., for 2-48 hours), and if no particulate is found when filter 26 is tested using the first protocol, then the sample taken from filter 26 is tested using the second protocol, by ascertaining if any of the particulate is present on the culture media surface after the sample has been cultured (e.g., for 2-48 hours). Typically, ascertaining if any of the particulate was present on the culture media surface comprises observing the culture media surface or applying a particulate-presence-testing-facilitation solution to the culture media surface.
[0857] Reference is now made to
[0858] Typically, plunger 24, once maximally advanced to barrier 108, is configured to prevent a particulate-presence-testing-facilitation solution that is applied to either one of filters 26a or 26b from contacting the other one of the filters.
[0859] Apparatus 20 may further comprise at least two puncturing elements 30e protruding from distal end 112 of plunger 24 and configured to puncture filters 26a and 26b, respectively, upon plunger 24 being advanced to filters 26a and 26b.
[0860] In some applications, distal end 100 of tube 22 is shaped to define at least two conduits 32d, configured to align with filters 26a and 26b, respectively. Following pushing the fluid through filters 26a and 26b, apparatus 20 may be turned upside-down and either one of filters 26a or 26b can be tested for presence of the particulate by passing the particulate-presence-testing-facilitation solution through a respective conduit 32d and subsequently inserting a dipstick through the respective conduit 32d. The second one of filters 26a or 26b can be left to culture inside tube 22 (e.g., 2-48 hours), or a sample may be taken from the second one filters 26a or 26b and cultured (e.g., for 2-48 hours).
[0861] In some applications, a distal portion of tube 22 is shaped to define at least one enclosed cavity 114 (
[0862] In some applications, plunger 24 is shaped to define plunger lumen 40c (
[0863] In some applications, plunger lumen 40c is closed at proximal end 98 of plunger 24 and contains the particulate-presence-testing-facilitation solution, and, upon opening of plunger lumen 40c, the particulate-presence-testing-facilitation solution is applied to only one filter 26a. In some applications, plunger lumen 40c further contains a gas above atmospheric pressure, such that the particulate-presence-testing-facilitation solution is forced out upon opening of plunger lumen 40c. Filter 26a is then tested by inserting a dipstick through respective conduit 32d. A sample may be taken from filter 26b and cultured (e.g., for 2-48 hours).
[0864] In other applications, plunger lumen 40c is initially empty and, following pushing the fluid through filters 26a and 26b, a sample can be taken from filter 26a by swabbing filter 26a with swab 144 from proximal end 98 of plunger 24 through plunger lumen 40c. The sample is cultured (e.g., for 2-48 hours) and after the sample has been taken, both filters 26a and 26b can then be tested by passing the particulate-presence-testing facilitation solution through respective conduits 32d and inserting dipsticks through respective conduits 32d. Filters 26a and 26b could be tested for presence of two different particulates respectively by passing different particulate-presence-testing-facilitation solutions through each respective conduit 32d.
[0865] In some applications, a length L3 (or corresponding area) of filter 26a(
[0866] Having filters 26a and 26b differ in size allows the particulate-presence-testing-facilitation solution to be applied to the larger of filters 26a or 26b, thereby increasing the chance of detecting the particulate with the initial rapid test. The smaller of filters 26a or 26b is typically cultured (e.g., for 2-48 hours) to increase the presence of the particulate.
[0867] In some applications, a culture medium is disposed on at least one of filters 26a or 26b, eliminating the need to swab the respective filter. Following the pushing of the fluid through filters 26a and 26b, one of filters 26a or 26b is simply left to culture and the particulate-presence-testing-facilitation solution is applied to the other one of filters 26a or 26b, on which no culture medium is disposed.
[0868] Height H3 of barrier 108 (
[0869] In some applications (configuration not shown), filters 26a and 26b are a first filter 26a and a second filter 26b, barrier 108 is a first barrier 108, and recess 110 is a first recess 110. First filter 26a is separated from second filter 26b by either first barrier 108 or first recess 110. Apparatus 20 further comprises a second barrier extending in a proximal direction, disposed within tube 22, and distal end 112 of plunger 24 may further be shaped to define a second recess into which the second barrier fits upon plunger 24 being advanced to the barriers. A third filter is disposed at either distal end 100 of tube 22 or distal end 112 of plunger 24, the third filter being separated from second filter 26b by either the second barrier or by the second recess. When apparatus includes three or more filters, as described hereinabove, apparatus 20 includes various combinations of the features described hereinabove with reference to
[0870] Reference is now made to
[0871] Reference is now made to
[0872] In some applications, distal end 100 of tube 22 is shaped to define at least two conduits 32e, configured to align with filters 26a and 26b, respectively. A stopper 148 is initially disposed over the distal openings of conduits 32e. Following pushing the fluid through filters 26a and 26b, apparatus 20 may be turned upside-down such that the proximal end of tube 22 or plunger 24 can be rested on a horizontal surface, stopper 148 removed, and either one of filters 26a or 26b can be tested for presence of the particulate by passing the particulate-presence-testing-facilitation solution through a respective conduit 32e and subsequently inserting a dipstick through the respective conduit 32e.
[0873] Reference is now made to
[0874] Reference is now made to
[0875] Reference is now made to
[0876] In some applications, plunger 24 is configured to rotate with respect to tube 22 such that friction caused by the rotation of distal end 12 against filter 26 tears filter 26 upon plunger 24 being maximally advanced in tube 22 and subsequently rotated with respect to tube 22.
[0877] Reference is now made to
[0878] Reference is now made to
[0879] Reference is now made to
[0880] Reference is now made to
[0881] Reference is now made to
[0882] In some applications, first pitch P1 of threading 136 at first location 140 is less than second pitch P2 of threading 136 at second location 142 (configuration not shown). An increasing pitch, in a proximal to distal direction, is advantageous for example when filter 26 is disposed in distal end 100 of tube 22, such that the fluid is being pushed distally out of a conduit in distal end 100 of tube 22, e.g., conduit 32. First pitch P1 is lower to facilitate easier advancement of plunger 24 while the fluid is initially pushed out of conduit 32, and subsequently, once the fluid has been pushed out, second pitch P2 is higher for the remaining advancement of plunger 24.
[0883] In some applications, a portion 146 of threading 136 that is closest to distal end 100 of tube 22 is perpendicular to a line 152 that is parallel to longitudinal axis 94 of tube 22. Protrusion 138 engages portion 146 of threading 136 when plunger 24 is maximally advanced within tube 22, such that plunger 24 can rotate with respect to tube 22 without further inhibition by threading 136. This uninhibited rotation of plunger 24 with respect to tube 22 facilitates, for example, tearing of filter 26 by rotation of plunger 24 once plunger 24 is maximally advanced within tube 22 and thereby testing for the particulate using the particulate-presence-testing-facilitation solution.
[0884] It is noted that apparatus 20 may include various combinations of features shown in
[0885] In general, the scope of the present invention includes using any number of filters, e.g., three or more. Furthermore, the scope of the present invention includes using adhesive properties of a filter to facilitate the trapping of the particulate. For example, mucus from the throat that contains the bacteria, and/or the cell walls of the bacteria, may adhere to the filter.
[0886] The scope of the present invention includes testing for various types of particulate matter, in addition to that which is delineated above. For example, apparatus and methods described herein may be used to test for parts of microscopic or macroscopic organisms, or for discharged matter (e.g., eggs) emanating from such organisms.
[0887]
[0888] Testing device 2020 typically comprises: [0889] a liquid container 2030 for containing liquid 2022; typically, liquid container 2030 has an internal volume of at least 0.5 ml (e.g., at least 1 ml, such as at least 5 ml), no more than 500 ml (e.g., no more than 70 ml), and/or between 0.5 ml (e.g., 1 ml or 5 ml) and 500 ml (e.g., 70 ml); [0890] a filter 2032, disposed in or downstream of liquid container 2030; and [0891] a liquid-pressure source 2034, which is arranged to apply pressure to drive liquid 2022 contained in liquid container 2030 through filter 2032.
[0892] As used in the present application, including in the claims, “upstream” and “downstream” refer to the direction of fluid flow through testing device 2020, and not the orientation of the device with respect to the Earth. For example, filter chamber 736, described hereinbelow with reference to
[0893] Typically, liquid container 2030 does not comprise a Luer lock or any other type of needle-coupling mechanism.
[0894] Filter 2032 comprises synthetic or natural materials formed, for example, as a matrix, membrane, fabric, beads, or other configuration. For example, the inventors have tested the following filters manufactured by Sterlitech (Washington, USA): [0895] Grade C glass microfiber filter media (Cat. No. C2500 & C3700) [0896] GC-50 glass fiber membrane filters (Cat. No. GC5037100) [0897] polyethersulfone (PES) membrane filters (Cat. No. PES0825100, PES0837100, PES1225100, PES1237100, PES06525100, PES4525100, PES4525100) [0898] polycarbonate membrane filters (Cat. No. PCT0613100, PCT2025100, PCT0625100, PCT1025100, PCT0825100) [0899] cellulose acetate membrane filters (Cat. No. CA0825100) [0900] polyester membrane filters (Cat. No. PET0125100, PET0825100)
[0901] Typically, filter 2032 is configured to trap at least 40% (such as at least 95%, e.g., at least 99%) of the particulate to be tested and allow passage of liquid 2022. For example, for applications in which the particulate is group A streptococcus bacteria, the filter may be configured to trap at least 40% (such as at least 95%, e.g., at least 99%) of the group A streptococcus bacteria and allow passage of liquid 2022. For some applications, filter 2032 has a filter surface area of an upstream side of the filter equal to at least 0.3 cm2, no more than 100 cm2 (e.g., no more than 30 cm2), and/or between 0.3 cm2 and 100 cm2, such as between 0.3 and 30 cm2. For some applications, filter 2032 has a pore size of at least 0.01 microns, no more than 20 microns, and/or between 0.01 and 20 microns (such as for capturing viruses, bacteria, and/or cells), such as at least 0.01 microns and/or no more than 0.3 microns (e.g., for capturing viruses), at least 0.45 microns and/or no more than 2 microns (e.g., for capturing bacteria), at least 2 microns and/or no more than 20 microns (e.g., for capturing human cells), or at least 0.01 microns and/or no more than 20 microns (e.g. for capturing viruses and bacteria).
[0902] For some applications, liquid-pressure source 2034 comprises at least one of the following: [0903] a plunger 2040, which comprises a plunger head 2042 that is shaped so as to be insertable into liquid container 2030 so as to form a movable seal with a wall of a plunger housing (optionally, all or a portion of liquid container 2030 defines the wall of the plunger housing); [0904] a positive-pressure pump (e.g., a hydraulic pump, a syringe, or a motorized and/or electrical pump) disposed upstream of filter 2032 (configuration not shown); optionally, for some application, the positive-pressure pump comprises a chamber with one or more flexible walls, the squeezing of which pumps air and/or liquid 2022 itself out of the chamber; or [0905] a vacuum pump disposed downstream of filter 2032 (and, if provided, of the one or more valves 2060, described hereinbelow)(configuration not shown).
[0906] For some applications, plunger 2040 further comprises a plunger shaft, and plunger head 2042 is disposed at a downstream end portion of the plunger shaft. Typically, but not necessarily, plunger 2040 has one of the following configurations: [0907] the plunger head comprises a separate piece of material (e.g., comprising a polymer) that is coupled to the plunger shaft and is shaped so as to define the downstream surface of plunger head 2042 and optionally a lateral sealing surface, or [0908] the distal surface of plunger head 2042 is defined by the end of the plunger shaft, and, for example, a separate sealing ring (e.g., comprising a polymer) may be provided to provide a lateral sealing surface.
[0909] For some applications, testing device 2020 further comprises a waste liquid receptacle 2046, which is coupled to liquid container 2030 downstream of filter 2032 (and, if provided, of the one or more valves 2060, described hereinbelow). Liquid-pressure source 2034 is arranged to apply pressure to drive liquid 2022 contained in liquid container 2030 through filter 2032 and then into waste liquid receptacle 2046.
[0910] For some applications, testing device 2020 further comprises a filter chamber 2036 that is (a) disposed downstream of liquid container 2030, (b) shaped so as to define an inlet 2038, and (c) in fluid communication with filter 2032. Filter chamber 2036 is shaped such that when filter 2032 is pushed into the filter chamber, such as described hereinbelow with reference to
[0911] Optionally, filter chamber 2036 is nipple-shaped. For some applications in which testing device 2020 comprises waste liquid receptacle 2046, filter chamber 2036 is laterally surrounded by at least a portion of waste liquid receptacle 2046, such as shown in
[0912] For some applications, inlet 2038 of filter chamber 2036 has an inlet area that equals at least 4%, no more than 40%, and/or between 4% and 40% of a filter surface area of an upstream side of filter 2032, such as between 10% and 20%. Alternatively or additionally, for some applications, filter chamber 2036 has: [0913] an internal volume of at least 0.5 ml, no more than 12 ml (e.g., no more than 4 ml), and/or between 0.5 and 12 ml (such as between 0.5 and 4 ml), such as at least 1 ml (e.g., at least 2 ml), no more than 5 ml, and/or between 1 and 5 ml, such as between 2 and 5 ml, [0914] an internal surface area that equals at least 10%, no more than 150%, and/or between 10% and 150% of a filter surface area of an upstream side of filter 2032, such as between 70% and 130%, [0915] an internal length L equal to between 0.5 and 10 cm, such as between 1.5 and 5 cm, [0916] an internal width W equal to between 0.3 and 3 cm, such as between 0.5 and 1.5 cm, [0917] an internal length L of at least 0.5 cm, no more than 10 cm (e.g., no more than 5 cm), and/or between 0.5 and 10 cm, such as between 0.5 cm and 5 cm, e.g., between 1 and 5 cm, and/or [0918] an internal length L equal to at least 50%, no more than 2000%, and/or between 50% and 2000% of a greatest internal width W of filter chamber 2036, such as between 200% and 600%.
[0919] For some applications, such as shown in
[0920] For some applications, inlet 2038 has an inlet centroid 2052 that is disposed within a distance of a filter centroid 2054, the distance equal to 50% of a greatest dimension of filter 2032, when filter 2032 is removably disposed upstream of filter chamber 2036 with filter 2032 partially covering inlet 2038. For example, filter 2032 may be centered upstream of inlet 2038.
[0921] For some applications, an elongate member 2056 is provided that configured to push at least a portion of filter 2032 into filter chamber 2036. Optionally, elongate member 2056 comprises a swab 2058 at a distal end of the elongate member. In applications in which filter chamber 2036 comprises one or more pressure-activated valves 2050, inserting elongate member 2056 into filter chamber may squeeze any liquid 2022 remaining in filter chamber 2036 through one or more pressure-activated valves 2050 and out of filter chamber 2036. For other applications in which liquid-pressure source 2034 comprises plunger 2040, plunger head 2042 is configured to push at least a portion of filter 2032 into filter chamber 2036 (configuration not shown). In applications in which filter chamber 2036 comprises one or more pressure-activated valves 2050, inserting plunger head 2042 into filter chamber may squeeze any liquid 2022 remaining in filter chamber 2036 through one or more pressure-activated valves 2050 and out of filter chamber 2036.
[0922] Reference is still made to
[0923] For some applications, the one or more valves 2060 comprise one or more pressure-activated valves. For example, as mentioned above, filter chamber 2036 may comprise one or more pressure-activated valves 2050, not disposed at inlet 2038. For example, the pressure-activated valves may be formed from slits or flaps in an elastic material (such as silicone), or may comprise any small valves known in the valve art. The one or more pressure-activated valves are configured to open at the higher pressure applied by liquid-pressure source 2034, so as to allow liquid 2022 to pass through filter 2032, and to remain closed at the much lower pressure applied by at least one extraction reagent 2086, as described hereinbelow with reference to
[0924] Alternatively or additionally, for some applications, the one or more valves 2060 comprise one or more non-pressure-activated valves, such as described hereinbelow with reference to
[0925] For some applications, sterile packaging is provided, in which at least liquid container 2030, filter chamber 2036, the one or more valves 2060, and/or filter 2032 are removably disposed. The sterile packaging comprises one or more sterile packages; for example, each element may be removably disposed in a separate one of the packages, and/or more than one the elements may be disposed in a single one of the packages.
[0926] For some applications, at least one container comprising the at least one extraction reagent 2086 is provided. For example, the at least one extraction reagent 2086 may comprise 2M sodium nitrite and/or 0.2M acetic acid, and/or a releasing agent, which, upon contacting a microorganism, releases an antigen from the microorganism. For applications in which more than one extraction reagent 2086 is provided, and/or extraction reagent 2086 comprises a plurality of substances, each of the extraction reagents 2086 and/or substances may be provided in a separate container, and the extraction reagents 2086 and/or substances are combined prior to (e.g., immediately prior to) performing the assay. Alternatively or additionally, for some applications, a test strip 2088 is provided. Typically, test strip 2088 is a lateral flow test strip, such as a lateral flow immunoassay (e.g., chromatographic immunoassay) test strip, as is known in the art. For example, test strip 2088 may contain an antibody specific to strep A carbohydrate antigen, and the mixture migrates up the test strip and reacts with the antibody, thus generating a line on the test strip; the presence of this line indicates a positive test result. Alternatively or additionally, for some applications, a container is provided containing a solution for use in a detecting a pathogen.
[0927] Reference is still made to
[0928] Upstream component 2070 typically comprises: [0929] a plunger housing 2074, which is shaped so as to define an upstream opening 2076 (labeled in
[0931] Typically, plunger housing 2074 does not comprise a Luer lock or any other type of needle-coupling mechanism.
[0932] Downstream component 2072 typically comprises: [0933] filter 2032, which has a filter surface area if an upstream side of the filter equal to at least 80% of the area of downstream surface 2080 of the downstream plunger head 2042; [0934] waste liquid receptacle 2046, disposed downstream of filter 2032; and [0935] for applications in which it is provide, filter chamber 2036.
[0936] Testing device 2020 is shaped so as to define liquid container 2030 for containing liquid 2022. Upstream component 2070 and downstream component 2072 are configured to be removably coupled together so as to form a liquid-impermeable seal, as shown in
[0937] For some applications, such as shown in
[0938] In general, in all of the configurations of testing devices described herein that comprise upstream and downstream components that are removably coupled together, the liquid container may be defined in part by the upstream component and in part by the downstream component. For example, a distal downstream wall of the liquid container that supports the filter may be defined by the downstream component, while the lateral wall of the liquid container may be defined by the upstream component or by the upstream and downstream components in combination.
[0939] For some applications, such as shown in
[0940] For some applications, an area of upstream opening 2076 is greater than the area of downstream opening 2078. For example, a diameter of upstream opening 2076 may be at least 10% (e.g., 20%, such as 30%) greater than a diameter of downstream opening 2078. For some of these applications, plunger housing 2074 includes an upstream end portion 2084 (labeled in
[0941] Reference is still made to
[0942] For applications in which one or more components of testing device 2020 are removably disposed in sterile packing, the one or more components are removed from the sterile packaging.
[0943] As shown in
[0944] Alternatively, liquid 2022 comprises saliva not swabbed from the throat of a patient (i.e., the saliva was collected without swabbing the patient's throat). (The distinction between “swab” as a verb and as a noun is noted. A “swab” (as a noun) may be used to obtain saliva without “swabbing” (as a verb) the patient's throat. For example, the patient may suck on a swab, or a swab may be dipped in a container into which gargle fluid or saliva has been placed.) By contrast, in commonly-practiced techniques for testing for strep, the tonsils are swabbed. Further alternatively, liquid 2022 comprises liquid from a cultured medium containing a biological sample which had been incubated within the liquid container 2030 or incubated separately from the device and then added to liquid container 2030, for example for performing a backup test (e.g., a backup strep test) using rapid testing techniques, e.g., rapid strep testing techniques. As used in the present application, including in the claims, in the context of backup testing, “rapid” testing techniques (such as “rapid” strep testing techniques) refer to the type of test, rather than implying that the test is performed and provides results soon after the sample is obtained from the patient; indeed, for performing backup testing, the rapid testing techniques are typically performed well after the sample has been obtained from the patients, such as a number of hours thereafter, and typically include incubation of the sample.
[0945] liquid 2022 (e.g., saliva) may be spit directly by the patient into liquid container 2030 or transferred by a healthcare worker from another container into which the patient spit. Alternatively, in the case of saliva, the saliva may be collected from the patient's mouth by having the patient suck on a swab or other absorbent collecting element, such as flocked swabs or cotton rolls.
[0946] For applications in which testing device 2020 comprises plunger 2040 and plunger housing 2074, such as described above, liquid 2022 is typically received in liquid container 2030 before plunger 2040 has been inserted into plunger housing 2074 (or liquid container 2030).
[0947] As shown in
[0948] As shown in
[0949] As shown in
[0950] As shown in
[0951] Alternatively, for some applications, the entire filter 2032 is removed from testing device 2020 and tested, outside testing device 2020, for the presence of the particulate. If such testing is a rapid strep test, the method may conclude with this test, and not continue with the performance of a test in testing device 2020, as described hereinbelow with reference to
[0952] As shown in
[0953] For some applications, the testing is performed by: [0954] applying an extraction reagent 2086 to filter 2032, such as shown in
[0956] Reference is still made to
[0959] Reference is now made to
[0960] Testing device 2120 comprises a filter 2132 that is disposed at least partially, e.g., entirely, within a filter chamber 2136. By contrast, filter 2032 of testing device 2020 is removably disposed upstream of filter chamber 2036 with filter 2032 partially covering inlet 2038. Other than this feature, filter 2132 may have any of the features of filter 2032 described hereinabove with reference to
[0961] Filter chamber 2136 may implement any of the features of filter chamber 2036, described hereinabove with reference to
[0962] Testing device 2120 may be used as described hereinabove with reference to
[0963] The pressure drives liquid 2022 from liquid container 2030 to filter chamber 2136, then through filter 2132, and then through the one or more pressure-activated valves 2050, and optionally into waste liquid receptacle 2046, if provided. Typically, liquid container 2030 is not shaped so as to define the one or more openings 2051 described hereinabove with reference to
[0964] For some applications, filter 2132 is disposed surrounding at least 270 degrees, typically 360 degrees, of a central longitudinal axis 2124 of filter chamber 2136, such that all or substantially all of liquid 2022 that passes out of filter chamber 2136 must pass through filter 2132. For some applications, filter 2132 covers all of the one or more pressure-activated valves 2050. For some applications, filter 2132 covers at least 80%, such as 100%, of the internal surface of filter chamber 2136. For some applications, such as shown in
[0965] Reference is now made to
[0966] Testing device 220 further comprises a frangible seal 226 that removably blocks liquid flow into an inlet 238 of a filter chamber 236. For example, frangible seal 226 may comprise a pliable material (such as silicone) that is easily torn, such as shown in Option A in
[0967] For some applications, filter chamber 236, before frangible seal 226 is broken, contains a material, such as a rapid test solution (e.g., a rapid strep test) in liquid or solid (e.g., powdered) form. This may simplify the use of the testing device because the material is not flushed during the application of pressure, and thus does not need to be added during use after applying the pressure.
[0968] For some applications, testing device 2020 further comprises a support for filter 2032 (e.g., the configuration of frangible seal 226 shown in Option B in
[0969] Reference is now made to
[0970] Reference is now made to
[0971] For applications in which the one or more valves 2060 are provided, such as shown in
[0972] The one or more second pressure relief valves 361 allow drainage of liquid 2022 if excess pressure occurs in liquid container 2030, such as if filter 2032 becomes clogged during the application of pressure described hereinabove with reference to
[0973] Reference is made to
[0974] Reference is made to
[0975] Reference is made to
[0976] Reference is made to
[0977] Testing device 620 comprises one or more unfiltered liquid receptacles 644 (e.g., vials). The one or more second pressure relief valves 361, 348 are in fluid communication with the one or more unfiltered liquid receptacles 644, such that when pressure is applied, as described hereinabove with reference to
[0978] Reference is now made to
[0979] Testing device 720 comprises a liquid-pressure source 734, which comprises a plunger 740, which comprises a plunger head 742 that is shaped so as to be insertable into a liquid container 730. Plunger 740 is shaped so as to define a waste liquid receptacle 746.
[0980] Plunger 740 is also shaped so as to define a filter chamber 736. Filter chamber 736 typically does not comprise any pressure-activated valves 2050. Testing device 720 further comprises a frangible seal 726 that removably blocks liquid flow into an inlet 738 of filter chamber 736. Frangible seal 726 may implement any of the features of frangible seal 226 described hereinabove with reference to
[0981] For some applications, testing device 720 comprises a cap 792, which is removably coupled to a distal end of liquid container 730 (i.e., to the end opposite the end into which plunger 740 is inserted). A proximal wall 794 of cap 792 defines a distal wall of liquid container 730. For some applications, cap 792 is shaped so as to define an unfiltered liquid receptacle 744, and proximal wall 794 of cap 792 comprises one or more second pressure relief valves 761 that (a) are in fluid communication with unfiltered liquid receptacle 744 and, when cap 792 is coupled to liquid container 730, with liquid container 730, and (b) are disposed upstream of filter 732.
[0982] Before use (e.g., during manufacture), cap 792 is removably coupled to liquid container 730, such as by twisting the cap onto liquid container 730, as shown in
[0983] liquid 2022 (such as gargled fluid, saliva not swabbed from the throat of a patient, or an incubated culture medium containing a biological sample) is received in liquid container 730.
[0984] As shown in
[0985] As shown in
[0986] As shown in
[0987] As shown in
[0988] The use of testing device 720 may continue as described hereinabove with reference to
[0989] Reference is now made to
[0990] Testing device 820 comprises waste liquid receptacle 2046, which contains an antibacterial agent 824, such as a detergent, thiomersal, bleach, or iodine (1/Kl) to kill any bacteria that passes through filter 2032, to reduce the risk of contamination upon accidental exposure to the liquid in waste liquid receptacle 2046.
[0991] For some applications, an inlet 838 of a filter chamber 336 of testing device 820 has an inlet area that is less than a greatest cross-sectional area of filter chamber 336, the inlet area and the greatest cross-sectional area measured in respective planes parallel to each other. For example, the inlet area may be no more than 95%, such as no more than 90%, e.g., no more than 80% of the greatest cross-sectional area of filter chamber 336. Providing this narrowing of filter chamber 336 at inlet 838 may help retain filter 2032 in filter chamber 336 during withdrawal of elongate member 2056, as described hereinabove with reference to
[0992] Reference is now made to
[0993] The one or more valves 2060 of testing device 920 comprise one or more non-pressure-activated valves 960. For example, the one or more non-pressure-activated valves 960 may be opened and closed by aligning and non-aligning, respectively, sets of openings in two discs 962A and 962B of the one or more non-pressure-activated valves 960, either manually or automatically by the testing device, such as described hereinbelow. Other manual and automated configurations will be readily apparent to those skilled in the art who have read the present application.
[0994] During use, liquid 2022 is received in a liquid container 930, as shown in
[0995] Thereafter, as partially shown in
[0996] As described hereinabove, for some applications, the testing devices described herein comprise a liquid-pressure source that is arranged to apply pressure to drive liquid contained in the liquid container through the filter and, optionally, then into the waste liquid receptacle. For some of these applications, the testing device is configured to automatically (typically, non-electrically) close one or more non-pressure-activated valves of the testing device after the plunger applies the pressure to drive the liquid contained in the liquid container through the filter and then through the one or more non-pressure-activated valves. For some of these applications, the testing device is configured such that motion of the plunger automatically (typically, non-electrically) closes the one or more non-pressure-activated valves after the plunger applies the pressure to drive the liquid contained in the liquid container through the filter and then through the one or more non-pressure-activated valves. Although the testing device is described in this and the following configurations as non-electrically closing the one or more non-pressure-activated valves, the testing device may alternatively electrically close the one or more non-pressure-activated valves, such as using a motor.
[0997] Reference is now made to
[0998] As shown in
[0999] For some applications, plunger 1440 is shaped so as to define one or more plunger threads 1466, and an internal wall of liquid container 1430 is shaped so as to define one or more liquid-container threads 1468 that engage the one or more plunger threads 1466 such that rotation of plunger 1440 advances plunger 1440 in a downstream direction within liquid container 1430. Advancing plunger 1440 helps control the speed of the advancement and helps maintain steady advancement against pressure in liquid container 1430.
[1000] For some applications, the one or more non-pressure-activated valves 1460 comprise two discs 1462A and 1462B, which are shaped so as to define respective sets of openings 1463A and 1463B, for example as described hereinabove with reference to
[1001] For some applications, testing device 1420 comprises one or more reagent containers 1471, such as capsules, that contain one or more extraction reagents 2086 (either the same type of extraction reagents or differing extraction reagents). Reagent containers 1471 are disposed at least partially in liquid container 1430, such that upon opening of the containers, such as by crushing, tearing, or breaking, extraction reagents 2086 are released into liquid container 1430, typically near filter 2032. For example, testing device 1420 may configured such that rotational motion of plunger 1440 automatically opens reagents containers 1471, such as by bringing one or more respective protrusions 1473 into contact with the reagent containers. For example, a fraction of the last turn (or the last turn), may automatically open reagents containers 1471. Typically, a fraction of last turn (may or may not include the last portion of the last turn) opens reagents containers 1471, and the fraction occurs after the fraction of the last turn that closes the one or more non-pressure-activated valves 1460, such that the one or more valves are closed before the reagents are released.
[1002] Reference is made to
[1003] In this portion of the method, the user typically receives testing device 1420 with the elements thereof removably coupled together, as shown in
[1004] Reference is now made to
[1005] Reference is now made to
[1006] Reference is now made to
[1007] Reference is now made to
[1008] In these configurations, testing device 2020 further comprises one or more heating elements 1000 that are configured to heat filter 2032 and/or liquid 2022 in liquid container 2030 at a generally constant temperature, typically in the range of 20 and 50 degrees C., such as in the range of 30 to 40 degrees C. It is noted that the temperature is considered “generally constant” even if the temperature varies somewhat, such as because of cycling on and off of the one or more heating elements 1000.
[1009] Heating elements 1000 may comprise, for example, electrical heating elements or chemical heating elements (e.g., a heating bag). For applications in which heating elements 1000 are electrical, they are coupled in electrical communication with a power supply 1002, such as an external power supply (e.g., the power grid) or an external or internal battery. For example, the coupling may be done using a conventional electrical plug or USB interface. For some applications, testing device comprises control circuitry 1004 and a heat sensor 1006 (e.g., a thermocouple or other thermostat), and control circuitry 1004 is configured to drive heating elements 1000 responsively to a temperature sensed using heat sensor 1006 in order to maintain the generally constant temperature mentioned above.
[1010] For some applications, heating elements 1000 are disposed external to main body of testing device 2020, such as supported by a stand 1001, such as shown in
[1011] For other applications, such as shown in
[1012] For still other applications, such as shown in
[1013] For other applications, such as shown in
[1014] For some applications, the one or more heating elements 1000 are configured to heat filter 2032 and/or liquid 2022 in liquid container 2030 after most or nearly all (e.g., at least 90%) of liquid 2022 has been driven out of liquid container 2030 and the particulate has been trapped by filter 2032, such as shown in
[1015] For other applications, the one or more heating elements 1000 are configured to heat filter 2032 and/or liquid 2022 in liquid container 2030 while most (e.g., at least 90%) or all of liquid 2022 remains in liquid container 2030 before being driven out of liquid container 2030 and through filter 2032, e.g., by pushing with plunger head 2042, such as shown in
[1016] Depending on the characteristics of the particular type of filter 2032 used, the filter may be damaged (e.g., degraded) by immersion in heated liquid 2022 for 1 to 24 hours. Therefore, in order to prevent such possible damage, testing device 2020 may be oriented with filter 2032 above liquid 2022 and liquid-pressure source 2034 (e.g., plunger 2040) below filter 2032, such that liquid 2022 is not in contact with filter 2032 during the heating, such as shown in
[1017] Alternatively, in order to prevent the above-mentioned possible damage, for some applications, such as shown in
[1018] Reference is now made to
[1019] Reference is now made to
[1020] Reference is now made to
[1021] In step 1202, after incubation, an RST, e.g., a lateral flow test, is performed on the mixture of gargled fluid and growth medium. For some applications, the RST may be one of the following: an ELISA-based RST, an antibody-coated-beads-based RST, a nucleic-acid-based RST, and a fluorescent immunoassaying (FIA) RST. As supported by the experimental data set forth hereinbelow in the section entitled, “Measuring Group A Beta-Hemolytic Streptococcus Bacteria in Throat Gargle: Results of Overnight Growth in Liquid Media, Assayed by Rapid Strep Test,”, a number of methods used for performing the RST yield usable results, as follows: [1022] RST is performed on the mixture of gargled fluid and growth medium while the gargled fluid and growth medium are in the container. This method of RST is referred to as “whole tube RST” in the experimental data. [1023] At least a portion, e.g., at least 0.05 ml, e.g., 0.1 ml, of the mixture of gargled fluid and growth medium is transferred to another container, and the RST is performed on the portion of the gargled fluid and growth medium in the other container. This method of RST is referred to as “sample RST” in the experimental data. For some applications, the portion of the mixture is transferred by inserting an absorbent element, e.g., a swab, e.g., a flocked, cotton, or polyester swab, into the mixture of gargled fluid and growth medium and then placing the swab into the other container. Alternatively, if an absorbent element, e.g., a swab, was used to transfer liquid 2022, e.g., the gargled fluid, into the container with growth medium, then that same absorbent element, e.g., swab may be removed and used to transfer the portion of the mixture into the other container for “sample RST.” For some applications, the portion of the mixture is transferred into the container, e.g., test tube 2085, by other means, such as for example, pouring, using a syringe, using a pipette, or a pump. [1024] At least a portion of the mixture of gargled fluid and growth medium, after incubation, is filtered, e.g., passed through a filtration membrane (optionally, using any of the filtering devices described herein), and the RST is performed on the filter. This method of RST is referred to as “filter RST” in the experimental data.
[1025] Results of a clinical trial performed by the inventors, including twenty-eight patients, are shown in Tables 1A-1D of
[1026] Reference is now made to
[1027] Typically, the container containing the growth medium does not contain agar. For some applications, the patient sucks on the swab, or the swab is rubbed on the patient's tongue and/or cheek. In this manner, the saliva is received on the swab, e.g., a flocked swab, a cotton swab, or a polyester swab, from the patient's mouth, and the swab is then placed directly into the container that contains the growth medium. Alternatively, the patient spits saliva into the container.
[1028] In step 1206, after incubation, an RST, e.g., a lateral flow test, is performed on the mixture of saliva and growth medium. For some applications, the RST may be one of the following: an ELSA-based RST, an antibody-coated-beads-based RST, a nucleic-acid-based RST, and a fluorescent immunoassaying (FIA) RST. As supported by the experimental data set forth hereinbelow in the section entitled, “Measuring Group A Beta-Hemolytic Streptococcus Bacteria in Saliva Sample: Results of Overnight Growth in Liquid Media, Assayed by Rapid Strep Test,” and similarly to as described hereinabove with reference to
[1033] In a clinical trial performed by the inventors, 28 patients were asked to suck on a flocked swab for about ten seconds. The saliva swabs were then inoculated onto blood plates, and beta-hemolytic colonies were counted using a light table. As illustrated by Table 5 of
[1034] As illustrated by the experimental data, experiments were also carried out by the inventors using saliva swab simulations by dipping swabs into pure GAS bacteria suspensions (referred to as “saliva swab simulation 1” in the experimental data) or into gargled fluid that was spiked with GAS bacteria (referred to as “saliva swab simulation 2” in the experimental data). The data presented in Table 7 of
[1035] Almost all saliva swab clinical samples which were inoculated into Todd Hewitt (TH) broth and assayed by backup methods using RST methods yielded either true positive or true negative results for all subjects enrolled in phase 2 of the Proof of Concept Clinical Trial, seen in Table 9 of
[1036] Reference is now made to
[1037] Testing device 1020 comprises: [1038] liquid container 2030 for containing liquid 2022; [1039] filter 2032, disposed in or downstream of liquid container 2030; and [1040] plunger head 2042, which (a) is shaped so as to be insertable into liquid container 2030, (b) is configured to apply pressure to drive liquid 2022 from liquid container 2030 through filter 2032, and (c) has downstream surface 2080.
[1041] Downstream surface 2080 is at least partially coated with a solid (e.g., dehydrated and/or powdered) or semi-solid (e.g., gel and/or paste) growth medium 1022. For example, growth medium 1022 may comprise agar.
[1042] For some applications, a cap 1024 is provided that is configured to be coupled to and fully cover growth medium 1022 on downstream surface 2080 of plunger head 2042. For example, cap 1024 may be transparent to enable observation of the culture on downstream surface 2080 without removing the cap.
[1043] Typically, plunger head 2042 is shaped so as to be insertable into liquid container 2030 so as to form a movable seal with a wall of liquid container 2030. For some applications, testing device 1020 further comprises a plunger shaft 1031, and plunger head 2042 is disposed at a downstream end portion of plunger shaft 1031.
[1044] Plunger 2040 (including plunger head 2042 and plunger shaft 1031) may implement any of the configures of plunger 2040 described hereinabove with reference to
[1045] For some applications, a method for using testing device 1020 comprises: [1046] pushing plunger head 2042 to apply pressure to drive liquid 2022 from liquid container 2030 through filter 2032; [1047] touching downstream surface 2080 of plunger head 2042 to filter 2032; particulate 1023, such as bacteria, on filter 2032 are captured by growth medium 1022 on downstream surface 2080; and [1048] assessing downstream surface 2080 of plunger head 2042 for biological growth.
[1049] Typically, downstream surface 2080 is placed directly in an incubator before assessing, thereby obviating the need to use another device to take a backup sample and plate it onto agar. Downstream surface 2080 is optionally accessed by decoupling upstream component 2070 from downstream component 2072, such as described hereinabove with reference to
[1050] For some applications, liquid 2022 includes at least one substance selected from the group of substances consisting of gargled fluid, saliva not swabbed from the throat of a patient, and an incubated culture medium containing a biological sample.
[1051] For some applications, downstream surface 2080 of plunger head 2042 is assessed for biological growth of a biological particulate selected from the group consisting of: a microorganism, a fungus, a bacterium, a spore, a virus, a mite, a biological cell, a biological antigen, a protein, a protein antigen, and a carbohydrate antigen. For some applications, plunger head 2042 is heated before downstream surface 2080 of plunger head 2042 is assessed for biological growth.
[1052] Reference is now made to
[1053] The method comprises: [1054] pushing plunger head 2042 to apply pressure to drive liquid 2022 from liquid container 2030 of testing device 1120 through filter 2032; [1055] touching downstream surface 2080 of plunger head 2042 to filter 2032; [1056] thereafter, touching downstream surface 2080 of plunger head 2042 to culture medium 1126 contained in a culture-medium container 1128, such as a petri dish; for example, culture medium 1126 may include agar; [1057] heating culture-medium container 1128; and [1058] assessing culture-medium container 1128 for biological growth.
[1059] For some applications, liquid 2022 includes at least one substance selected from the group of substances consisting of gargled fluid, saliva not swabbed from the throat of a patient, and an incubated culture medium containing a biological sample.
[1060] For some applications, culture-medium container 1128 is assessed for biological growth of a biological particulate 1023 selected from the group consisting of: a microorganism, a fungus, a bacterium, a spore, a virus, a mite, a biological cell, a biological antigen, a protein, a protein antigen, and a carbohydrate antigen.
[1061] Downstream surface 2080 is optionally accessed by decoupling upstream component 2070 from downstream component 2072, such as described hereinabove with reference to
[1062] S For some applications, plunger head 2042 is rotated while touching downstream surface 2080 of plunger head 2042 to filter 2032 to increase the sample taken from filter 2032, such as by macerating or grinding the filter. For applications in which downstream surface 2080 is decoupled from upstream component 2070 by rotation, this rotation may itself increase the sample taken from filter 2032.
[1063] For some applications, downstream surface 2080 of plunger head 2042 is rough, i.e., is shaped so as to define many small protrusions 1122, such as like sandpaper, or with plastic protrusions, in order to collect a better sample of particulate 1023 by macerating or grinding the filter.
[1064] For some applications, touching downstream surface 2080 of plunger head 2042 to filter 2032 comprises grinding filter 2032 with rough downstream surface 2080.
[1065] For some applications, the method further comprising testing, within testing device 1120, for the presence of biological particulate 1023 trapped by filter 2032, such as described hereinabove. In these applications, the sample taken from downstream surface 2080 of plunger head 2042 is used to perform a backup test, e.g., a backup strep test, for the rapid test performed inside testing device 1120, as described hereinabove.
[1066] Reference is now made to
[1067] Reference is also made to
[1071] Testing device 1320 is configured such that rotation of plunger head 1342 radially compresses filter 2032 toward a central longitudinal axis 1364 of plunger head 1342, as shown in
[1072] For some applications, plunger head 1342 comprises a protrusion 1366 (best seen in
[1073] For some applications, liquid container 1330 is shaped so as to define a filter-support surface 1371 surrounding downstream opening 1378. Filter-support surface 1371 supports a radial portion 1373 of filter 2032 excluding a central portion 1375 of filter 2032 (the central portion 1375 is typically removably disposed over downstream opening 1378). Filter-support surface 1371 is shaped so as to define a spiral groove 1377. Protrusion 1366 is configured to engage spiral groove 1377 through filter 2032.
[1074] Testing device 1320 is configured such that the rotation of plunger head 1342 (such as by between one-third of a turn to 10 turns) causes spiral groove 1377 to guide protrusion 1366 radially toward central longitudinal axis 1364 of plunger head 1342.
[1075] Reference is now made to
[1076] As shown in
[1077] As shown in
[1078] As shown in
[1079] Optionally, liquid container 1330 includes a narrower outlet portion, and radially compresses the filter also deposits all or a portion of the filter in the narrower outlet portion.
[1080] As shown in
[1081] For some applications, testing machine 1310 comprises a waste liquid receptacle 1346, into which liquid 2022 is driven ater passing through filter 2032.
[1082] Typically, waste liquid receptacle 1346 is large enough to accommodate tests performed using several testing devices 1320.
[1083] Reference is again made to
[1087] Testing kit 1390 does not comprise a plunger shaft. Instead, plunger head 1342 is removably coupled to plunger shaft 1341 of testing machine 1310, as described above with reference to
[1088] Although testing kit 1390 has been described with reference to liquid container 1330 and plunger head 1342, testing kit 1390 may alternatively comprise any of the other liquid containers described herein or another liquid container known in the art, and/or plunger head 1342 may alternatively comprise any of the other plunger heads described herein or another plunger head known in the art.
[1089] For some applications, sterile packaging is provided, in which at least liquid container 1330, plunger head 1342, and filter 2032 are removably disposed. The sterile packaging comprises one or more sterile packages; for example, each element may be removably disposed in a separate one of the packages, and/or more than one the elements may be disposed in a single one of the packages.
[1090] Although techniques for testing, including rapid testing, are generally described herein as being performed for detecting strep, they may also be used to detect other biological particulate, such as a virus. For example, for detecting a virus, the filters described herein may capture epithelial cells that include the virus.
Measuring Group A Beta-Hemolytic Streptococcus Bacteria in Throat Gargle: Results of Overnight Growth in Liquid Media, Assayed by Rapid Strep Test
[1091] In some applications of the present invention, group A streptococcus bacteria (GAS) can be detected in throat gargle by two primary method types: Direct (“Immediate”) methods and Indirect (“Backup”) methods. Immediate methods yield results faster than Backup methods (<20 minutes vs. 12-48 hours) but are not as sensitive (higher rate of false negatives).
[1092] In a clinical experiment performed by the inventors, Backup methods for GAS detection in throat gargle were tested. The experimental data is based on two types of GAS throat gargle simulations: pure GAS liquid suspension and throat gargle spiked with GAS. The Clinical Trial data is based on throat gargles obtained from patients with GAS pharyngitis who were enrolled in phase 2 of a Proof of Concept Clinical Trial (Protocol Number: STRP.P001, SNIH Clinical Trial Number: NCT03231098, Shaare Zedek Medical Center Helsinki IRB Number: SZMC-0181-17).
Materials and Methods
[1093] Bacterial Culture: 10 GAS strains were used: 1 standard control strain and 9 wildtype strains. The control GAS strain was American Type Culture Collection (“ATCC”) 19615, a strain often used for quality control, and the wildtype GAS strains were isolated during Clinical Trials and labeled WT-1 through WT-9. All GAS bacteria used in experiments were taken from 1-7 days old cultures on blood agar plates stored at 4-8° C.
[1094] Growth conditions: The bacteria were routinely grown in a 37° C. incubator, without agitation. Liquid cultures were grown in 4 mL plastic test tubes, with liquid volumes of 0.45 mL, 0.6 mL, 1.0 mL, 1.1 mL, and 3.6 mL after inoculation. Cultures were incubated for 12-75 hours.
[1095] Growth media: Blood plate media: Standard 90 mm plate (Petri dishes) containing TSA+5% sheep blood. Blood plates were purchased from Hylabs (Rehovot, Israel, Cat. No. PD-049). Liquid media: Tryptic Soy Broth (“TSB”), which is a well-known general-purpose growth media. Sterile TSB tubes were purchased from Hylabs (Cat. No. TT139). Liquid media: Todd Hewitt broth (“TH”), which is a media specifically developed to grow Streptococci. TH powder was purchased from Sigma Aldrich (Missouri, USA, Cat. No. T1438-500g). The media was prepared and sterilized by filtration through 0.2 um filtration units. The liquid growth media was prepared with 4.5 times the concentration recommended in the instructions. At this higher concentration, the liquid growth media had the following concentrations: glucose: 9 g/L; nitrogen source: 135 g/L; inorganic molecules: 22.05 g/L; and total solids: 166.5 g/L (as shown in the 4.5 row of Table 11, described hereinbelow.
[1096] Bacterial suspensions: Pure GAS bacterial suspensions were made by transferring GAS colonies from culture into sterile Phosphate Buffer Saline (“PBS”).
[1097] Bacterial counts: 0.05 mL or 0.1 mL samples of bacterial suspensions or throat gargles were inoculated onto blood plates without dilution and with using the appropriate limiting dilutions (dilutions of 10-fold to 8000-fold) and beta-hemolytic colonies were counted using a light table.
[1098] Throat gargle: Throat gargles were obtained by gargling 10-1 mL PBS for approximately 10 seconds.
[1099] Gargle spiked with GAS: Pure GAS liquid suspensions were added to gargle and diluted with gargle as necessary.
[1100] RST methods: Lateral flow immuno-assay RST kits were purchased from Moore Medical (Connecticut, USA, Cat. No. 82792). Standard RST: Conducted according to manufacturers' instructions. Swab containing specimen sample was placed into a tube containing 8 drops of RST solutions, agitated slightly, and removed after 1-3 minutes. RST dipstick was then added to tube and removed after 5 minutes. 0.1 ml. Sample RST: Similar to standard RST. 0.1 mL of specimen sample was added to tube containing RST solutions instead of a swab. Whole tube RST: 8 drops of RST solutions were added directly into tubes containing liquid culture media (0.4 mL, 0.9 mL, or 3.0 mL) incubated with gargle or simulated gargle, and RST dipstick was added to tube 1-3 minutes after addition of RST solutions. Filter RST Culture media incubated with gargle or simulated gargle was filtered, membrane filter containing concentrated specimen sample was placed into a tube, 8 drops of RST solutions were added, and tube contents were mixed by a blunt tip for 30-45 seconds. The RST dipstick was added to the filter mixture approximately 3 minutes after addition of RST solutions.
Summary of Results
[1101] Of the 28 patients enrolled in phase 2 of the Proof of Concept Clinical Trial, 19 patients had true positive results from Backup Test methods performed using RST methods and 9 patient had true negative results from Backup Test methods performed using RST methods, as displayed in Table 1A-ID of
[1102] The data in Table 1B-1D of
[1103] Overall, 78 experimental systems containing simulated GAS gargles yielded true positive RST results, as detailed in Table 2 of
[1104] Minimum incubation time was 12 hours, as set forth in Table 3 of
[1105] The data in Table 4 of
Conclusions
[1106] These experimental data support the Backup method for GAS detection in throat gargle that involves the incubation of a sample of unfiltered throat gargle in liquid culture media for 12 to 75 hours followed by lateral flow RST immunoassay. A total of 53 systems from 28 patients enrolled in phase 2 of the Proof of Concept Clinical Trial all yielded either true positive or true negative results. A total of 78 experimental systems yielded positive Backup Test methods performed using RST results in multiple conditions. The Filter RST Backup method is presented as the most sensitive Backup Test method performed using a RST method, but all Backup Test methods performed using RST methods were satisfactory.
Measuring Group A Beta-Hemolytic Streptococcus Bacteria in Saliva Sample: Results of Overnight Growth in Liquid Media, Assayed by Rapid Strep Test
[1107] In some applications of the present invention, group A streptococcus bacteria (GAS) can be detected from saliva swab by Indirect (“Backup”) methods. In a clinical experiment performed by the inventors, Backup methods for GAS detection from saliva swab were tested. The experimental data is based on GAS growth simulations and the Clinical Trial data is based on saliva swabs obtained from patients with GAS pharyngitis who were enrolled in phase 2 of a Proof of Concept Clinical Trial (Protocol Number: STRP.P001, SNIH Clinical Trial Number: NCT03231098, Shaare Zedek Medical Center Helsinki IRB Number: SZMC-0181-17).
Materials and Methods
[1108] Bacterial Culture: 10 GAS strains were used: 1 standard control strain and 9 wildtype strains. The control GAS strain was American Type Culture Collection (“ATCC”) 19615, a strain often used for quality control, and the wildtype GAS strains were isolated during Clinical Trials and labeled WT-1 through WT-9. All GAS bacteria used in experiments were taken from 1-7 days old cultures on blood agar plates stored at 4-8° C.
[1109] Growth conditions: The bacteria were routinely grown in a 37° C. incubator, without agitation. Liquid cultures were grown in 4 mL plastic test tubes, with liquid volumes of 0.9-1.1 mL after inoculation. Cultures were incubated for 12-75 hours.
[1110] Growth media: Blood plate media: Standard 90 mm plate (Petri dishes) containing TSA+5% sheep blood. Blood plates were purchased from Hylabs (Rehovot, Israel, Cat. No. PD-049). Liquid media: Todd Hewitt broth (“TH”), which is a media specifically developed to grow Streptococci. TH powder was purchased from Sigma Aldrich (Missouri, USA, Cat. No. T1438-500g). The media was prepared and sterilized by filtration through 0.2 um filtration units. The liquid growth media was prepared with 4.5 times the concentration recommended in the instructions. At this higher concentration, the liquid growth media had the following concentrations: glucose: 9 g/L; nitrogen source: 135 g/L; inorganic molecules: 22.05 g/L; and total solids: 166.5 g/L (as shown in the 4.5 row of Table 11, described hereinbelow.
[1111] Swabs: Flocked Swabs: Swabs with a tip of short nylon brush-like fibers designed for efficient absorption and elution, purchased from Puritan Diagnostics (Maine, USA, Cat. No. 25-3306-H). Cotton Swabs: Swabs with a tip comprised of a cotton matrix, purchased from Kodan Medicam (Bet Shemesh, Israel, Cat. No. 1102245).
[1112] Polyeser Swabs: Swabs with a tip comprised of a polyester matrix, manufactured by Puritan Diagnostics (Guilford, Main, USA), Cat. No. 25-806 1PD SOLID).
[1113] Bacterial suspensions: Pure GAS bacterial suspensions were made by transferring GAS colonies from culture into sterile Phosphate Buffer Saline (“PBS”).
[1114] Gargle spiked with GAS: Throat gargles were obtained by gargling 10-1 mL PBS for approximately 10 seconds and pure GAS suspensions were added to gargle and diluted with gargle as necessary.
[1115] Saliva swabs: Saliva swabs were obtained from patients enrolled in the Clinical Trial. Patients were asked to suck on a flocked swab for approximately 10 seconds.
[1116] Saliva swabs obtained from Clinical Trial subjects were inoculated onto blood plates and beta-hemolytic colonies were counted using a light table. Some saliva swabs were then inoculated into TH culture media and swab was left in culture media during incubation. Both the culture media and the swab were later assayed by Backup methods performed using RST methods.
[1117] RST methods: Lateral flow immuno-assay RST kits were purchased from Moore Medical (Connecticut, USA, Cat. No. 82792). Swab sample RST: After incubation, saliva swab was removed from culture media and placed into a tube containing 8 drops of RST solutions, agitated slightly, and removed after 1-3 minutes. RST dipstick was then added to tube and removed after 5 minutes. 0.1 mL sample RST Similar to swab RST. 0.1 mL of specimen sample was added to tube containing RST solutions instead of a swab. Whole tube RST: In some cases, the 8 drops of RST solutions were added directly into tubes containing GAS in liquid culture media (0.9-1.1 mL) and RST dipstick was added to liquid culture media tube 1-3 minutes after addition of RST solutions. Filter RST: Culture media incubated with saliva swab was filtered, membrane filter was placed into a tube, 8 drops of RST solutions were added, and tube contents were mixed by a blunt tip for 30-45 seconds. The RST dipstick was added to the filter mixture approximately 3 minutes after addition of RST solutions.
[1118] Saliva swab simulation 1: Swabs were dipped into tubes containing pure GAS bacteria suspensions and agitated up and down 12-20 times before being removed for testing. Swabs were then inoculated onto blood plates and beta-hemolytic colonies were counted using a light table.
[1119] Saliva swab simulation 2: Swabs were dipped 5 times into tubes containing gargle spiked with GAS bacteria and then dipped 5 times into TH culture media to inoculate. Swabs were discarded prior to incubation of the culture media.
[1120] Bacterial counts: 0.05 mL or 0.1 mL samples of bacterial suspensions were inoculated onto blood plates using the appropriate limiting dilutions (dilutions of 8,000-fold or 30,000-fold) and beta-hemolytic colonies were counted using a light table.
Summary of Results
[1121] GAS was successfully captured from almost all plated saliva swab samples of positive subjects enrolled in phase 2 of the Proof of Concept Clinical Trial, as seen in Table 5 of
[1122] As presented in Table 6 of
[1123] After performing the experiment reflected in Table 6, the inventors appreciated that the data presented in Table 6 is invalid due to inaccurate testing. Due to the removal of some of the sample (for inoculating onto blood plates) prior to testing, as described above, the Backup methods using RST methods yielded inaccurate results, because the full sample was not tested. Subsequent clinical trial samples were tested properly utilizing the complete saliva sample (Patients 17-34), as described hereinbelow with reference to Table 8 of
[1124] Saliva swab simulation 1 shows that flocked swabs are the preferred swab for obtaining a salvia swab sample, as can be seen in Table 7 of
[1125] Saliva swab simulation 2 shows that flocked swabs, when used to inoculate a sample into TH culture broth for a Backup Test performed using RST methods, are as efficient as direct liquid transfer, as can be seen in Table 8 of
[1126] Almost all saliva swab clinical samples which were inoculated into Todd Hewitt (TH) broth and assayed by Backup methods using RST methods yielded either true positive or true negative results for all subjects enrolled in phase 2 of the Proof of Concept Clinical Trial, seen in Table 9 of
Conclusions
[1127] These experimental data support the Backup method for GAS detection using a saliva sample via the incubation of a saliva swab in liquid culture media followed by lateral flow RST immunoassay. Plated clinical saliva swab samples displayed a 94.7% successful capture rate of GAS which confirms that saliva samples are a viable alternative to gargling in cases where gargling is not possible. Saliva swab simulations support the concept that Backup Test methods performed using RST methods of saliva swabs incubated in liquid media is an efficient method for GAS detection. Additional saliva swab simulation data shows that flocked swabs increase the uptake and release of specimen samples compared to other swabs.
[1128] Clinical data from 18 samples demonstrates that a saliva swab Backup Test performed using RST methods in liquid media has high sensitivity (90%) and specificity (100%). Furthermore, the Filter Backup Test methods performed using RST methods yielded a higher sensitivity (90%) than the Swab Backup method performed using RST methods (80%).
[1129] A liquid growth medium and a method of using the liquid growth medium are provided for testing for the presence of group A streptococcus bacteria (GAS) in a sample of oral fluid obtained from a patient, in accordance with respective applications of the present invention. The liquid growth medium and/or the method may be used in combination with any of the techniques described hereinabove in which growth medium is used for testing for the presence of biological particulate, such as strep, e.g., GAS. Although the liquid growth medium and the method are generally described hereinbelow as being appropriate for testing for the presence of GAS, they may also be used to test for other types of streptococcus bacteria, other types of bacteria, a microorganism, a fungus, a spore, a virus, a mite, a biological cell, a biological antigen, a protein, a protein antigen, or a carbohydrate antigen.
[1130] The liquid growth medium has a substantially greater total nitrogen source concentration and a substantially greater total solids concentration than conventional liquid growth media used for incubating GAS. The liquid growth medium has a substantially greater osmotic value (indicative of the total concentration of molecules in the media) than conventional liquid growth media. In particular, the liquid growth medium typically has (a) a total nitrogen source concentration between 75 and 300 g/L and (b) a total solids concentration between 92.5 and 370 g/L.
[1131] The high-concentration liquid growth medium may be particularly useful for successfully growing low concentrations (typically between 100 and 500 CFU/ml) of GAS present in samples of oral fluid, such as gargled fluid gargled by the patient or saliva not swabbed from a throat of the patient. These samples of oral fluid typically contain many dozens of types (often over 100) of other types of interfering bacteria. As described below, the inventors have found that the use of conventional, lower concentration liquid growth media for testing for the presence of GAS in samples of oral fluid (rather than samples swabbed from the tonsils, as is conventional in strep testing) results in consumption of most of the nutrients in the liquid growth medium by the interfering bacteria, leaving insufficient nutrients to grow the GAS of interest to an extent adequate for accurate testing.
[1132] Many bacterial liquid growth media are used commercially to grow Group A streptococcus bacteria.
[1133] They all contain at least 2 of the following three types of components:
[1134] a. A sugar, usually glucose, as an energy source.
[1135] b. Nitrogen sources as building blocks for nitrogen and carbon.
[1136] c. Inorganic salts and molecules that serve as nutrients, as buffers to maintain pH during growth and to maintain osmotic balance.
[1137] The table below shows the respective concentrations of the abovementioned three components in some of the widely used, commercially available liquid growth media formulations (which can be obtained from many manufactures all over the world). The following are examples of typical formulations.
TABLE-US-00001 TABLE 10 Nitrogen Inorganic Total Formulation name Glucose Source molecules solids Todd Hewitt Broth 2 g/L 30 g/L 4.9 g/L 37 g/L Brain Heart Infusion 2 g/L 27.5 g/L 7.5 g/L 37 g/L Tryptic Soy Broth 2.5 g/L 20 g/L 7.5 g/L 30 g/L Columbia Broth 2.5 g/L 23.1 g/L 9.41 g/L 35 g/L Nutrient Broth None 20 g/L 5 g/L 25 g/L Thioglycollate broth 5.5 g/L 20.5 g/L 3 g/L 29.75 g/L
[1138] Thus, a typical conventional liquid growth media for streptococcal growth will contain=<30 g/L of nitrogen sources, >10 g/L of Inorganic molecules, >40 g/L of total solids. These conventional liquid growth media, having the respective concentrations as shown in Table 10, all enable good growth of GAS in pure form.
[1139] Furthermore, the use of a high-concentration liquid growth medium is conventionally believed to depress the growth of GAS. See, for example, Bernheimer, A. W. and Pappenheimer A. M. Jr., “Factors necessary for massive growth of Group A hemolytic Streptococcus”. Journal of Bacteriology, Volume 43(4), pages 481-494 (1941).
[1140] As described hereinabove, the liquid growth medium of the present application has a substantially greater osmotic value (indicative of the total concentration of molecules in the media) than conventional liquid growth media. For some applications, the total nitrogen source concentration is between 105 and 180 g/L, such as between 120 and 160 g/L, and/or the total solids concentration is between 130 and 222 g/L, such as between 148 and 193 g/L.
[1141] Typically, the liquid growth medium has a pH of between 6 and 8.3, such as between 7.0 and 8.0.
[1142] For some applications, the liquid growth medium has a total sugar concentration of between 6 and 20, such as between 6 and 12. For some of these applications, the liquid growth medium has a glucose concentration of between 7 and 10, such as between 8 and 9.5.
[1143] For some applications, an assembly is provided that includes the liquid growth medium and a sealed sterile container that contains the liquid growth medium.
[1144] For some applications, an assembly is provided that includes the liquid growth medium and a container that contains the liquid growth medium and a sample of oral fluid obtained from a patient, such as described above.
[1145] For some applications, a kit is provided that includes the liquid growth medium and a lateral flow strep test strip, one or more extraction reagents, and/or a filter.
[1146] In an application of the present invention, a method of preparing the liquid growth medium includes adding a quantity of powdered growth medium to a volume of distilled water, and stirring until the powdered growth medium is dissolved in the distilled water to produce the liquid growth medium. The quantity of powdered growth medium and the volume of the distilled water are typically selected such that the liquid growth medium has (a) a total nitrogen source concentration between 75 and 300 g/L and (b) a total solids concentration between 92.5 and 370 g/L. The liquid growth medium may optionally have any of characteristics described above.
[1147] In an application of the present invention, a method is provided for testing for the presence of GAS in a sample of oral fluid obtained from a patient, the method including: [1148] generating a biological product by incubating the sample of oral fluid for between 12 and 50 hours in a container that contains a liquid growth medium, the liquid growth medium having (a) a total nitrogen source concentration between 75 and 300 g/L and (b) a total solids concentration between 92.5 and 370 g/L; and [1149] thereafter, performing a strep test using a rapid strep test (RST) technique on the biological product.
[1150] For some applications, incubating includes incubating for between 16 and 50 hours.
[1151] Typically, the container does not contain agar. Alternatively, the container does contain some agar, but it is typically a relatively small amount compared to conventional strep culturing techniques.
[1152] For some applications, performing the strep test using the RST technique includes performing a lateral flow test. For some applications, performing the strep test includes applying one or more extraction reagents to the biological product.
[1153] Alternatively, for some applications, performing the strep test using the RST technique includes performing an RST technique selected from the group consisting of: an ELISA-based RST, an antibody-coated-beads-based RST, a nucleic-acid-based RST, and a fluorescent immunoassaying (FIA) RST.
[1154] Typically, but not necessarily, the sample of oral fluid is selected from the group consisting of: gargled fluid gargled by the patient, and saliva not swabbed from a throat of the patient (e.g., spit by the patient, or sucked onto a swab by the patient).
[1155] Alternatively, the sample of oral fluid is saliva swabbed from a tonsil of the patient.
[1156] For some applications, generating the biological product further includes filtering the sample of oral fluid and the liquid growth medium after incubating. For some of these applications, performing the strep test using the RST technique includes performing the strep test using the RST technique on the filter. For some of these filtering applications, the sample of oral fluid is saliva swabbed from a tonsil of the patient.
[1157] Typically, RST values below 0.25 (average of S and 10 minutes readings) are considered to be negative results. An RST value of 0.5 is indicative of a bacteria concentration of at least 10,000 CFU/ml
[1158] The inventors performed experimentation where the lateral flow values of pure systems grown in TH-1 and TH-10 were compared with the lateral flow values of TH-1 systems with added salt (NaCl) or sugar (Glucose) at increasing concentrations. The Lateral flow value of TH-10 was similar to the values of TH-1+5% NaCl and 30% glucose.
[1159] 5% Nacl and 30% glucose have similar Osmolarities, and inhibited the Strep to the same extent.
[1160] From this a value of about 180 MOsmomolar was calculated, and a demonstration of Osmolarity dependent Strep A growth inhibition was shown, in agreement with scientific literature.
[1161] A. The following is an experimental setup as performed by the inventors:
[1162] 1. Each system consisted of a 5 ml test tube, containing 1.1 ml growth media.
[1163] 2. 0.1 ml bacterial suspensions were added to each system and growth was started by incubation at 35.5° C., in air. Termination was done by withdrawal from the incubator and immediate processing, or by storage at 6-8° C. for up to 2 hours before processing.
[1164] 3. The 0.1 ml bacterial suspensions were of 3 types: [1165] (a) In “pure” systems the bacteria were suspended in sterile Phosphate-Buffered Saline (“PBS”). [1166] (b) In “Gargle” systems the bacteria were suspended in a gargle solution. Gargle was obtained by gargling 10-11 ml of sterile PBS for about 10 seconds and then transferring the gargle to a collection cup. [1167] (c) In “saliva” systems the bacteria were suspended in saliva. Saliva was obtained by spitting into a collection cup.
[1168] 4. Incubation was for a period of at least 4 hours but up to 3 days, depending on the experiment.
[1169] 5. Two strains of GAS were used: the well-known “ATCC 19615” strain, which is used as a control strain in many diagnostic applications, and a wild-type strain “WT-9,” which was isolated from a patient in a clinical trial performed on behalf of the inventors.
[1170] 6. Bacterial stock suspensions were obtained by resuspending in PBS a 1-4-days-old bacterial colony, grown at 35.5° C. on a blood agar plate for 1-2 days and then stored at 6-8° C. till used. The stock was diluted 10-250,000 fold, depending on the experiment, in either PBS, gargle or saliva. Bacterial dilutions of 4,800-20,000 in PBS were plated (50 microliters), grown at least overnight at 35.5° C., and the beta-hemolytic colonies counted.
[1171] 7. Processing the samples involved assaying 0.1 ml of sample in an antigen lateral flow, Rapid Strip Test, for Streptococcus Group A. Test strips were obtained from McKesson company, USA, and used in accordance with the manufacture instructions. Estimation of the strength of the positive line was done visually, by experience lab workers.
Example 1
[1172] The following Gargle/Saliva growth Media [GSM] were prepared based on the Todd Hewitt formula, with successively increasing concentrations of Glucose, Nitrogen Sources, and Inorganic molecules, as indicated in Table 11 below:
TABLE-US-00002 TABLE 11 Nitrogen Inorganic Total Formulation name Glucose Source molecules solids Todd Hewitt Broth X 2 g/L 30 g/L 4.9 g/L 37 g/L 1 (TH-1) Todd Hewitt Broth X 5 g/L 75 g/L 12.25 g/L 92.5 g/L 2.5 (GSM -1) Todd Hewitt Broth X 9 g/L 135 g/L 22.05 g/L 166.5 g/L 4.5 (GSM-2) Todd Hewitt Broth X 14 g/L 210 g/L 34.3 g/L 259 g/L 7 (GSM-3) Todd Hewitt Broth X 20 g/L 300 g/L 49 g/L 370 g/L 10 (GSM-4)
[1173] 1.1 ml of each of the above sterile solutions was placed in a tube.
[1174] Bacterial suspensions were prepared by spiking even number of bacteria cells in PBS×1, Gargle fluid and saliva.
[1175] 0.1 ml of bacterial suspension was added to each of the above growth media shown in Table 11 and incubated at 35.5° C., in air, for 16.5-17.5 hours to obtain cultures.
[1176] 0.1 ml of each culture was transferred each to a new tube containing Solution A (2M Sodium nitrite) and Solution B (0.2M Acetic acid) followed by a short mix on a Vortex mixer.
[1177] McKesson RSTs were dipped into each solution and results were read after 5 and 10 minutes according to arbitrary test line intensity scale. Results are presented as the average between the 2 readings.
Results
[1178] The following Table 12 summarizes test results, which are reflected as well in
TABLE-US-00003 TABLE 12 Pure Gargle Saliva Growth Media Test Line intensity TH-1 4.8 0.4 0.1 GSM -1 4.3 0.5 0.4 GSM- 2 4.3 4.3 0.5 GSM - 3 0.75 1 1.5 GSM-4 0.5 0.4 0.3
Conclusions
[1179] Both gargle and saliva suspensions grow best in a GSM media having a high concentration of solids.
[1180] As per the above results, the highest RST readings for gargle suspension growth resulted when GSM-2 was used.
[1181] As per the above results, the highest RST readings for saliva suspension growth resulted when GSM-3 was used.
[1182] Thus, the inventors have realized that the optimal range of solids concentrations in liquid growth media for growing gargle and saliva suspensions should be between 4.5-7×TH, i.e., 4.5-7 times the solids concentration in conventional Todd Hewitt liquid growth medium.
[1183] In contrast to bacteria sourced from gargle fluid and saliva, the growth of pure GAS culture was inhibited by higher solids concentrations.
Example 2
[1184] The following Gargle/Saliva growth Media [SPM] (shown in Table 14 below) were prepared based on a mix of several formulas as indicated in Table 13 below with successively increasing concentrations of Glucose, Nitrogen sources, and Inorganic molecules:
TABLE-US-00004 TABLE 13 Formulation name Brain Tryptic Beef Yeast Todd Heart Soy Ex- Ex- Glu- Hewitt Infusion Broth tract tract cose Percentage of 4.44 g/L 6.66 g/L 3.9 g/L 10 g/L 3 g/L 2 g/L total solids for SPM X 1
TABLE-US-00005 TABLE 14 Nitrogen Inorganic Total Formulation name Glucose Source molecules solids SPM X 1 (SPM-1) 2.9 g/L 24.15 g/L 2.9 g/L 30 g/L SPM X 3.5 (SPM-3.5 10.15 85.525 10.15 105 g/L SPM X 4.5 (SPM-4.5) 13.05 108.675 13.05 135 g/L SPM X 6 (SPM-6) 17.4 144.9 17.4 180 g/L SPM X 7 (SPM-7) 20.3 169.05 20.3 210 g/L SPM X 8.5 (SPM-8.5) 24.65 205.275 24.65 255 g/L SPM X 10 (SPM-10) 29 g/L 241.5 g/L 29 g/L 300 g/L
[1185] 1.1 ml of each of the above sterile solutions was placed in a tube.
[1186] Bacterial suspensions were prepared by spiking even number of bacteria cells in PBS×1, Gargle fluid and saliva.
[1187] 0.1 ml of bacterial suspension was added to each of the above growth media shown in Table 14 and incubated at 35.5° C., in air, for 22 hours to obtain cultures.
[1188] 0.1 ml of each culture was transferred each to anew tube containing Solution A (2M Sodium nitrite) and Solution B (0.2M Acetic acid) followed by a short mix on a Vortex mixer.
[1189] McKesson RSTs were dipped into each solution and results were read after 5 and 10 minutes according to arbitrary test line intensity scale. Results are presented as the average between the 2 readings.
Results
[1190] The following Table 15 summarizes test results, which are reflected as well in
TABLE-US-00006 TABLE 15 Growth Media Pure Gargle Saliva SPM-1 4.1 1 0.4 SPM-3.5 3.8 0.6 0.4 SPM-4.5 3.8 1 0.4 SPM-6 4.4 1.6 0.5 SPM-7 1 2.5 1 SPM-8.5 0.5 3 4.4 SPM-10 0.5 0.6 0.25
[1191] Thus, increasing the solids concentration in SPM growth media has a similar effect on GAS growth as shown using the GSM media of Example 1.
[1192] Solid concentration of growth media has the same effect in both cases (Example 1 and Example 2) regardless of the media nutrient composition.
Example 3
[1193] 1.1 ml of the TH-1 and 1.1 ml of GSM-1 growth media were each placed in respective tubes.
[1194] Bacterial suspensions were diluted to the final respective cell counts specified in Table 16 below for both growth media formulas. 0.1 ml of each diluted bacterial suspension was added to a tube of TH-1 growth medium and to a tube of GSM-1 growth medium and incubated at 35.5° C., in air, for 23 hours, to obtain cultures.
[1195] 0.1 ml of each culture was each transferred to a new tube containing Solution A (2M Sodium nitrite) and Solution B (0.2M Acetic acid) followed by a short mix on a Vortex mixer.
[1196] McKesson RSTs were dipped in the solution and results were read after 5 and 10 minutes according to arbitrary test line intensity scale. Results are presented as the average between the 2 readings.
Results
[1197] Lateral flow values of cultures grown at 35.5° C. for 23 h
TABLE-US-00007 TABLE 16 Test line intensity CFU per ml Culture CFU per tube TH-1 TH-4.5 Pure 180 4.3 4 920 4 3.5 4590 4.6 4.5 45880 4 3.6 458800 4.2 3.9 Gargle 180 0.1 4.4 920 1 4.4 4590 2.5 4.3 45880 4 3.4 458800 4.6 2.8
Conclusions
[1198] The range of cell numbers per ml in the above experiment represents the variability of cell counts in gargle fluids that were collected during clinical study conducted by Hero Scientific.
[1199] GAS cells both from pure culture and gargle fluid grow well in TH×4.5 and can be easily detected by the RST.
[1200] TH×1 is inferior to the high-solids concentration broth when gargle fluid is present in the broth at lower cell numbers. At higher cell numbers, even though TH-1 resulted in higher RST readings, TH-4.5 still resulted in sufficiently high readings so as to provide unambiguous results.
[1201] In an embodiment, the techniques and apparatus described herein are combined with techniques and apparatus described in one or more of the following patent applications, which are assigned to the assignee of the present application and are incorporated herein by reference: [1202] International Application PCT/IL2018/050225, filed Feb. 28, 2018, which published as WO 2018/158768 to Fruchter et al.; [1203] U.S. Provisional Application 62/727,208, filed Sep. 5, 2018; and/or [1204] International Application PCT/IL2019/050994, filed Sep. 5, 2019, which published as WO 2020/049566 to Fruchter et al.
[1205] It will be appreciated by persons skilled in the art that the present invention is not limited to what has been particularly shown and described hereinabove. Rather, the scope of the present invention includes both combinations and subcombinations of the various features described hereinabove, as well as variations and modifications thereof that are not in the prior art, which would occur to persons skilled in the art upon reading the foregoing description.