Biomarker-based methods for aiding the diagnosis of stroke

Abstract

The present invention provides biomarker-based methods for diagnosing stroke in a patient suspected of having suffered a stroke, and also for discriminating between ischemic stroke and transient ischemic attack. Substrates comprising probes for specific combinations of biomarkers useful in the methods of the invention are also described.

Claims

1. A method for diagnosing stroke in a patient suspected of having a stroke, comprising determining the concentration of at least two biomarkers in an in vitro sample obtained from the patient and establishing the significance of the concentration of the biomarkers by comparing the concentration value for each biomarker with a corresponding control value, wherein the at least two biomarkers are selected from ICAM-1 (intracellular adhesion molecule 1), L-selectin, P-selectin, VCAM-1 (vascular cell adhesion molecule 1), IL-6 (interleukin-6), sTNFR1 (soluble tumour necrosis factor receptor 1), D-dimer and CRP (C-reactive protein), and wherein at least one of the two biomarkers is selected from ICAM-1, L-selectin, P-selectin and VCAM-1, wherein if stoke is diagnosed, a second method is carried out in order to differentially diagnose the stroke type, the second method comprising: i) determining the concentration of VCAM-1 and one or more biomarkers selected from h-FABP (human fatty acid binding protein), IL-6 and CRP in an in vitro sample obtained from the patient; and ii) establishing the significance of the concentration of the biomarkers by comparing the concentration value for each biomarker with a corresponding control value, wherein the corresponding control value is the concentration value for the corresponding biomarker determined from an in vitro sample obtained from a transient ischaemic attack patient or patients.

Description

DESCRIPTION OF THE DRAWINGS

(1) FIG. 1 is a graph showing the concentration of VCAM-1 for all stroke patients, each stroke sub-type and the control subjects;

(2) FIG. 2 is a graph showing the concentration of ICAM-1 for all stroke patients, each stroke sub-type and the control subjects;

(3) FIG. 3 is a graph showing the concentration of E-selectin for all stroke patients, each stroke sub-type and the control subjects;

(4) FIG. 4 is a graph showing the concentration of P-selectin for all stroke patients, each stroke sub-type and the control subjects;

(5) FIG. 5 is a graph showing the concentration of L-selectin for all stroke patients, each stroke sub-type and the control subjects;

(6) FIG. 6 is a graph showing the concentration of IL-6 for all stroke patients, each stroke sub-type and the control subjects;

(7) FIG. 7 is a graph showing the concentration of sTNFR1 for all stroke patients, each stroke sub-type and the control subjects;

(8) FIG. 8 is a graph showing the concentration of NGAL for all stroke patients, each stroke sub-type and the control subjects;

(9) FIG. 9 is a graph showing the concentration of D-dimer for all stroke patients, each stroke sub-type and the control subjects;

(10) FIG. 10 is a graph showing the concentration of TM for all stroke patients, each stroke sub-type and the control subjects;

(11) FIG. 11 is a graph showing the concentration of CRP for all stroke patients, each stroke sub-type and the control subjects;

(12) FIG. 12 is a graph showing the concentration of h-FABP for all stroke patients, each stroke sub-type and the control subjects;

(13) FIG. 13 is a graph showing the concentration of diluted CRP for all stroke patients, each stroke sub-type and the control subjects;

(14) FIG. 14 is a ROC curve for VCAM-1 (all stroke v control);

(15) FIG. 15 is a ROC curve for ICAM-1 (all stroke v control);

(16) FIG. 16 is a ROC curve for P-selectin (all stroke v control);

(17) FIG. 17 is a ROC curve for L-selectin (all stroke v control);

(18) FIG. 18 is a ROC curve for IL-6 (all stroke v control);

(19) FIG. 19 is a ROC curve for sTNFR1 (all stroke v control);

(20) FIG. 20 is a ROC curve for CRP (all stroke v control);

(21) FIG. 21 is a ROC curve for NGAL (all stroke v control); and

(22) FIG. 22 is a ROC curve for D-dimer (all stroke v control).

DETAILED DESCRIPTION OF THE INVENTION

(23) The present invention relates to biomarker-based methods and biochips that can be used for rapid diagnosis of stroke, and furthermore to aid discrimination between the three stroke sub-types: haemorrhagic stroke (HS), ischemic stroke (IS) and transient ischemic attack (TIA).

(24) Unless stated otherwise, all references herein to the term stroke encompasses all three forms of stroke.

(25) References herein to a patient suspected of having a stroke or having had a stroke include a patient who is suspected of currently suffering from a stroke or who is suspected of having previously had a stroke. The stroke may have been a recent event, such an event having initiated the process of the individual seeking clinical help.

(26) The terms subject and patient may be used interchangeably herein and refer to a mammal including a non-primate (e.g. a cow, pig, horse, dog, cat, rat and mouse) and a primate (e.g. a monkey and human). Preferably the subject or patient is a human.

(27) As used herein, the term biomarker refers to a molecule present in a biological sample obtained from a patient, the concentration of which in said sample may be indicative of a pathological state. Various biomarkers that have been found to be useful in diagnosing stroke and stroke sub-types, either alone or in combination with other diagnostic methods, or as complementary biomarkers in combination with other biomarkers, are described herein. A used herein, the term complementary biomarker refers to a biomarker that can be used in conjunction with other stroke biomarkers to support diagnosis.

(28) It is well understood in the art that biomarker normal or background concentrations may exhibit slight variation due to, for example, age, gender or ethnic/geographical genotypes. As a result, the cut-off value used in the methods of the invention may also slightly vary due to optimization depending upon the target patient/population.

(29) The biological sample obtained from a patient is preferably a blood, serum or plasma sample. As used herein, the term in vitro has its usual meaning in the art and refers to a sample that has been removed from a patient's body.

(30) When a blood sample is taken from the patient for analysis, whole blood, serum or plasma is analysed. Analysis of the blood sample can be by way of several analytical methodologies such as mass spectrometry linked to a pre-separation step such as chromatography. The preferred methodology is based on immuno-detection Immuno-detection technology is also readily incorporated into transportable or hand-held devices for use outside of the clinical environment. A quantitative immunoassay such as a Western blot or ELISA can be used to detect the amount of protein. A preferred method of analysis comprises using a multi-analyte biochip which enables several proteins to be detected and quantified simultaneously. 2D Gel Electrophoresis is also a technique that can be used for multi-analyte analysis.

(31) A first aspect of the invention provides a method for diagnosing stroke in a patient suspected of having a stroke, comprising determining the concentration of at least two biomarkers in an in vitro sample obtained from the patient and establishing the significance of the concentration of the biomarkers by comparing the concentration value for each biomarker with a corresponding control value, wherein the at least two biomarkers are selected from ICAM-1, L-selectin, P-selectin, VCAM-1, IL-6, sTNFR1, D-dimer and CRP, and wherein at least one of the two biomarkers is selected from ICAM-1, L-selectin, P-selectin and VCAM-1.

(32) Preferably the at least two biomarkers are selected from (i) ICAM-1 or VCAM-1 and (ii) L-selectin or P-selectin, and more preferably they are ICAM-1 and L-selectin. Combinations of three or more biomarkers are also preferred as they show the highest sensitivity and specificity.

(33) In preferred embodiments, the method further comprises determining the sample concentration of one or more biomarkers selected from IL-6, sTNFR1, D-dimer and CRP. The method may also further comprise determining the sample concentration of h-FABP.

(34) For the avoidance of doubt, in the context of this aspect of the invention, stroke refers to all stroke (i.e. all three stroke sub-types).

(35) Preferred biomarker combinations are those listed in Table 1 or Table 2. These tables provide sensitivity, specificity and AUC data for different biomarker combinations for stoke v control.

(36) TABLE-US-00001 TABLE 1 % Sensi- % Speci- Biomarker(s) tivity ficity AUC 1. VCAM-1 ICAM-1 80.6 75.0 0.831 2. VCAM-1 Psel 87.8 71.7 0.913 3. VCAM-1Lsel 89.8 86.7 0.943 4. VCAM-1IL-6 80.6 78.3 0.879 5. VCAM-1 CRP 78.6 75.0 0.826 6. VCAM-1 D-dimer 87.8 76.7 0.686 7. VCAM-1 NGAL 81.6 73.3 0.867 8. VCAM-1 sTNFRI 82.7 75.0 0.832 9. IL-6 sTNFRI 78.6 75.0 0.870 10. ICAM-1 Psel 92.9 76.7 0.932 11. ICAM-1 Lsel 90.8 90.0 0.954 12. ICAM-1 IL-6 83.7 83.3 0.897 13. ICAM-1 CRP 79.6 80.0 0.822 14. ICAM-1 D-dimer 86.7 76.7 0.905 15. ICAM-1 NGAL 81.6 73.3 0.836 16. ICAM-1 sTNFRI 77.6 73.3 0.832 17. IL-6 NGAL 87.8 81.7 0.909 18. Psel Lsel 88.8 65.0 0.867 19. Psel IL-6 90.8 78.3 0.937 20. Psel CRP 87.8 68.3 0.888 21. Psel D-dimer 90.6 85.0 0.931 22. Psel NGAL 86.7 58.3 0.838 23. Psel sTNFRI 86.7 65.0 0.685 24. IL-6 D-dimer 64.7 81.7 0.910 25. Lsel IL-6 84.7 85.0 0.907 26. Lsel CRP 86.7 71.7 0.863 27. Lsel D-dimer 68.8 80.0 0.894 28. Lsel NGAL 90.8 51.7 0.833 29. Lsel sTNFRI 84.7 61.7 0.862 30. IL-6 CRP 76.5 81.7 0.870 31. IL-6 NGAL sTNFRI 89.8 81.7 0.942 32. IL-6 D-dimer sTFNRI 85.7 80.0 0.908 33. IL-6 D-dimer NGAL 92.9 83.3 0.943 34. IL-6 CRP sTNFRI 75.5 78.3 0.872 35. VCAM-1 ICAM-1 Psel 91.8 80.0 0.946 36. VCAM-1 ICAM-1 Lsel 93.9 93.3 0.975 37. VCAM-1 ICAM-1 IL-6 85.7 81.7 0.906 38. VCAM-1 ICAM-1 CRP 80.6 78.3 0.853 39. VCAM-1 ICAM-1 D-dimer 88.8 80.0 0.907 40. VCAM-1 ICAM-1 NGAL 85.7 80.0 0.895 41. VCAM-1 ICAM-1 sTNFRI 82.7 75.0 0.856 42. IL-6 CRP NGAL 85.7 80.0 0.915 43. VCAM-1 Psel Lsel 92.9 88.3 0.957 44. VCAM-1 Psel IL-6 90.8 76.7 0.962 45. VCAM-1 Psel CRP 87.8 78.3 0.930 46. VCAM-1 Psel D-dimer 89.8 83.3 0.955 47. VCAM-1 Psel NGAL 89.8 76.7 0.932 48. VCAM-1 Psel sTNFRI 88.8 76.7 0.923 49. IL-6 CRP D-dimer 81.6 80.0 0.911 50. VCAM-1 Lsel IL-6 89.8 90.0 0.957 51. VCAM-1 Lsel CRP 91.8 91.7 0.951 52. VCAM-1 Lsel D-dimer 89.8 85.0 0.946 53. VCAM-1 Lsel NGAL 92.9 83.3 0.962 54. VCAM-1 Lsel sTNRI 83.3 87.8 0.947 55. Lsel NGAL sTNFRI 89.8 80.0 0.931 56. VCAM-1 IL-6 CRP 79.6 81.7 0.881 57. VCAM-1 IL-6 D-dimer 86.7 88.3 0.916 58. VCAM-1 IL-6 NGAL 91.8 86.7 0.941 59. VCAM-1 IL-6 sTNFRI 81.6 80.0 0.882 60. Lsel D-dimer sTNFRI 83.7 76.7 0.905 61. VCAM-1 CRP D-dimer 85.7 81.7 0.895 62. VCAM-1 CRP NGAL 87.8 81.7 0.911 63. VCAM-1 CRP sTNFRI 80.6 78.3 0.837 64. Lsel D-dimer NGAL 91.8 85.0 0.921 65. VCAM-1 D-dimer NGAL 90.8 96.7 0.938 66. VCAM-1 D-dimer sTNFRI 87.8 80.0 0.891 67. Lsel CRP sTNFRI 84.7 73.3 0.875 68. VCAM-1 NGAL sTNFRI 89.8 80.0 0.930 69. Lsel CRP D-dimer 86.7 76.7 0.908 70. Lsel CRP NGAL 86.7 73.3 0.882 71. ICAM-1 Psel Lsel 95.9 91.7 0.977 72. ICAM-1 Psel IL-6 93.9 91.7 0.979 73. ICAM-1 Psel CRP 92.9 83.3 0.949 74. ICAM-1 Psel D-dimer 93.9 88.3 0.969 75. ICAM-1 Psel NGAL 88.8 78.3 0.938 76. ICAM-1 Psel sTNFRI 91.8 81.7 0.946 77. Lsel IL-6 sTNFRI 84.7 81.7 0.911 78. ICAM-1 Lsel IL-6 92.9 90.0 0.975 79. ICAM-1 Lsel CRP 89.8 90.0 0.958 80. ICAM-1 Lsel D-dimer 90.8 88.3 0.964 81. ICAM-1 Lsel NGAL 91.8 86.7 0.963 82. ICAM-1 Lsel sTNFRI 91.8 88.3 0.965 83. Lsel IL-6 NGAL 90.8 83.3 0.920 84. ICAM-1 IL-6 CRP 8.7 83.3 0.896 85. ICAM-1 IL-6 D-dimer 87.8 85.0 0.931 86. ICAM-1 IL-6 NGAL 89.6 86.7 0.934 87. ICAM-1 IL-6 sTNFRI 84.7 80.0 0.903 88. Lsel IL-6 D-dimer 86.7 81.7 0.920 89. ICAM-1 CRP D-dimer 88.0 85.0 0.911 90. ICAM-1 CRP NGAL 85.7 76.7 0.682 91. ICAM-1 CRP sTNFRI 77.6 73.3 0.844 92. Lsel IL-6 CRP 87.8 81.7 0.914 93. ICAM-1 D-dimer NGAL 90.6 63.3 0.932 94. ICAM-1 D-dimer sTNFRI 87.8 80.0 0.909 95. Psel NGAL sTNFRI 89.8 76.7 0.930 97. ICAM-1 NGAL sTNFRI 87.8 83.3 0.920 98. Psel D-dimer sTNFRI 89.8 81.7 0.930 99. Psel D-dimer NGAL 91.8 86.7 0.947 100. Psel Lsel IL-6 89.8 78.3 0.943 101. Psel Lsel CRP 89.8 75.0 0.903 102. Psel Lsel D-dimer 90.8 83.3 0.936 103. Psel Lsel NGAL 88.8 70.0 0.873 104. Psel Lsel sTNFRI 90.8 71.7 0.914 105. Psel CRP sTNFRI 87.6 70.0 0.897 106. Psel IL-6 CRP 88.8 76.7 0.945 107. Psel IL-6 D-dimer 90.8 88.3 0.957 108. Psel IL-6 NGAL 92.9 88.3 0.953 109. Psel IL-6 sTNDRI 89.6 78.3 0.944 110. Psel CRP NGAL 86.7 75.0 0.907 111. Psel CRP D-dimer 91.8 85.0 0.946 112. VCAM-1 IL-6, NGAL sTNFRI 91.8 90.0 0.961 113. VCAM-1 D-dimer, NGAL sTNFRI 89.8 88.3 0.959 114. ICAM-1, Lsel IL-6 D-dimer 92.9 90.0 0.980 115. ICAM-1 Lsel IL-6 NGAL 94.9 91.7 0.983 116. ICAM-1 Lsel IL-6 sTNFRI 92.9 91.7 0.978 117. ICAM-1 Lsel D-dimer NGAL 94.9 91.7 0.975 118. ICAM-1 Lsel D-dimer sTNFRI 93.9 90.0 0.975 119. ICAM-1Lsel NGAL sTNFRI 96.9 95.0 0.978 120. ICAM-1 IL-6 D-dimer NGAL 91.8 88.3 0.966 121. ICAM-1 IL-6 D-dimer sTNFRI 86.7 86.7 0.932 122. ICAM-1 IL-6 NGAL sTNFRI 92.9 85.0 0.967 123. ICAM-1 D-dimer NGAL sTNFRI 91.8 85.0 0.959 124. Lsel IL-6 D-dimer NGAL 92.9 88.3 0.948 125. Psel Lsel IL-6 ICAM-1 95.9 95.0 0.995 126. Lsel IL-6 NGAL sTNFRI 93.9 85.0 0.958 127. Lsel D-dimer NGAL sTNFRI 90.8 86.7 0.946 128. VCAM-1 ICAM-1 Lsel IL-6 96.9 95.0 0.985 129. VCAM-1 ICAM-1 Lsel D-dimer 94.9 93.3 0.978 130. VCAM-1 ICAM-1 Lsel NGAL 96.9 93.3 0.94 131. VCAM-1 ICAM-1 Lsel sTNFRI 94.9 95.0 0.977 132. VCAM-1 ICAM-1 IL-6 D-dimer 86.7 86.7 0.933 133. VCAM-1 ICAM-1 IL-6 NGAL 91.8 83.3 0.954 134. Psel Lsel IL-6 VCAM-1 93.9 86.7 0.972 135. VCAM-1 ICAM-1 D-dimer NGAL 89.8 80.0 0.948 136. Psel Lsel IL-6 D-dimer 89.8 88.3 0.959 137. VCAM-1 ICAM-1 NGAL sTNRI 85.7 81.7 0.944 138. VCAM-1 Lsel IL-6 D-dimer 90.8 91.7 0.956 139. VCAM-1 Lsel IL-6 NGAL 92.9 91.7 0.972 140. VCAM-1 Lsel IL-6 sTNFRI 88.8 90.0 0.959 141. VCAM-1 Lsel D-dimer NGAL 93.9 90.0 0.968 142. VCAM-1 Lsel D-dimer sTNFRI 92.9 88.3 0.949 143. VCAM-1 Lsel NGAL sTNFRI 91.8 90.0 0.970 144. VCAM-1 IL-6 D-dimer NGAL 92.9 88.3 0.971 145. IL-6 D-dimer NGAL sTNFRI 89.8 88.3 0.971 146. Psel Lsel IL-6 NGAL 93.9 85.0 0.953 147. CRP D-dimer ICAM-1 IL-6 87.8 85.0 0.932 148. CRP D-dimer ICAM-1 Lsel 91.8 91.7 0.966 149. CRP D-dimer ICAM-1 NGAL 87.8 83.3 0.939 150. Psel Lsel ICAM-1 D-dimer 98.0 93.3 0.989 151. Psel Lsel ICAM-1 CRP 95.9 90.0 0.980 152. Psel IL-6 ICAM-1 D-dimer 95.9 93.3 0.988 153. CRP D-dimer IL-6 NGAL 91.8 85.0 0.948 154. CRP Lsel sTNFRI VCAM-1 87.8 90.0 0.952 155. Psel IL-6 ICAM-1 NGAL 94.9 90.0 0.983 156. CRP D-dimer Lsel NGAL 93.9 80.0 0.935 157. CRP Lsel NGAL sTNFRI 91.8 81.7 0.933 158. CRP D-dimer Lsel VCAM-1 88.3 91.8 0.950 159. Lsel Psel VCAM-1 ICAM-1 94.9 95.0 0.986 160. CRP D-dimer NGAL VCAM-1 90.8 85.0 0.950 161. CRP IL-6 NGAL VCAM-1 90.8 88.3 0.947 162. CRP ICAM-1 IL-6 Lsel 92.9 90.0 0.975 163. CRP ICAM-1 IL-6 NGAL 88.8 83.3 0.938 164. CRP IL-6 NGAL sTNFRI 89.8 80.0 0.947 165. CRP IL-6 Lsel VCAM-1 90.6 91.7 0.957 166. CRP ICAM-1 Lsel NGAL 94.9 88.3 0.970 167. CRP ICAM-1 Lsel sTNFRI 91.8 88.3 0.968 168. CRP ICAM-1 Lsel VCAM-1 93.9 95.0 0.976 169. CRP IL-6 Lsel NGAL 88.8 83.3 0.931 170. CRP NGAL sTNFRI VCAM-1 87.8 85.0 0.934

(37) TABLE-US-00002 TABLE 2 % Sensi- % Speci- Biomarkers tivity ficity AUC 1. VCAM1 + FABP 89.8 95.0 0.960 2. ICAM1 + FABP 92.9 93.3 0.964 3. PSel + FABP 95.9 91.7 0.961 4. LSel + FABP 91.8 95.0 0.970 5. VCAM1 + ICAM1 + FABP 92.9 93.3 0.965 6. VCAM1 + PSel + FABP 95.9 91.7 0.983 7. VCAM1 + Lsel + FABP 92.9 96.7 0.971 8. VCAM1 + IL6 + FABP 90.8 95.0 0.961 9. VCAM1 + CRP + FABP 89.8 95.0 0.960 10. VCAM1 + DDimer + FABP 90.8 95.0 0.963 11.VCAM1 + NGAL + FABP 98.0 93.3 0.986 12. VCAM1 + sTNFRI + FABP 89.8 91.7 0.962 13. ICAM1 + PSel + FABP 96.9 93.3 0.990 14. ICAM1 + LSel + FABP 96.9 93.3 0.993 15. ICAM1 + IL6 + FABP 91.8 91.7 0.966 16. ICAM1 + CRP + FABP 92.9 93.3 0.964 17. ICAM1 + DDimer + FABP 92.9 95.0 0.968 18. ICAM1 + NGAL + FABP 96.9 95.0 0.984 19. ICAM1 + sTNFRI + FABP 91.8 93.3 0.966 20. PSel + LSel + FABP 95.9 93.3 0.985 21. PSel + IL6 + FABP 93.9 93.3 0.985 22. PSel + CRP + FABP 92.9 91.7 0.983 23. PSel + DDimer + FABP 93.9 93.3 0.964 24. PSel + NGAL + FABP 96.9 96.7 0.993 25. PSel + sTNFRI + FABP 93.9 91.7 0.983 26. Lsel + IL6 + FABP 90.8 93.3 0.975 27. LSel + CRP + FABP 91.8 93.3 0.970 28. IL6 + CRP + FABP 91.8 96.7 0.962 29. IL6 + DDimer + FABP 89.8 93.3 0.963 30. IL6 + NGAL + FABP 91.8 93.3 0.990 31. IL6 + sTNFRI + FABP 89.8 91.7 0.963 32. LSel + DDimer + FABP 90.8 93.3 0.973 33. LSel + NGAL + FABP 95.9 93.3 0.989 34. LSel + sTNFRI + FABP 92.9 93.3 0.972 35. FABP + CRP + DDimer 90.8 93.3 0.962 36. FABP + CRP + NGAL 95.9 93.3 0.985 37. FABP + CRP + sTNFRI 90.8 93.3 0.959 38. FABP + DDimer + NGAL 95.9 93.3 0.985 39. FABP + DDimer + sTNFRI 91.8 93.3 0.962 40. CRP + IL6 + FABP 89.8 93.3 0.962 41. DDimer + IL6 + FABP 91.8 93.3 0.963 42. NGAL + IL6 + FABP 95.9 93.3 0.990 43. sTNFRI + IL6 + FABP 89.8 91.7 0.963 44. IL6 + NGAL + FABP + DDimer 96.9 93.3 0.990 45. LSel + NGAL + FABP + DDimer 95.9 93.3 0.992 46. LSel + NGAL + FABP + IL6 94.9 93.3 0.994 47. PSel + sTNFRI + FABP + DDimer 93.9 93.3 0.985 48. PSel + sTNFRI + FABP + NGAL 96.9 96.7 0.994 49. PSel + IL6 + FABP + DDimer 93.9 91.7 0.986 50. PSel + IL6 + FABP + NGAL 96.9 95.0 0.996 51. PSel + LSel + FABP + DDimer 95.9 93.3 0.987 52. PSel + LSel + FABP + IL6 93.9 91.7 0.987 53. PSel + LSel + FABP + NGAL 96.9 96.7 0.994 54. PSel + LSel + FABP + CRP 94.9 93.3 0.985 55. ICAM1 + NGAL + FABP + IL6 95.9 93.3 0.991 56. ICAM1 + NGAL + FABP + DDimer 96.9 95.0 0.986 57. ICAM1 + NGAL + FABP + CRP 96.9 95.0 0.986 58. ICAM1 + LSel + FABP + IL6 95.9 95.0 0.994 59. ICAM1 + LSel + FABP + NGAL 99.0 96.7 0.996 60. ICAM1 + LSel + FABP + DDimer 96.9 95.0 0.993 61. ICAM1 + LSel + FABP + CRP 96.9 93.3 0.993 62. ICAM1 + LSel + FABP + sTNFRI 96.9 93.3 0.993 63. ICAM1 + PSel + FABP + IL6 98.0 95.0 0.994 64. ICAM1 + PSel + FABP + NGAL 96.9 96.7 0.996 65. ICAM1 + PSel + FABP + DDimer 96.9 93.3 0.991 66. ICAM1 + PSel + FABP + CRP 98.0 91.7 0.990 67. ICAM1 + PSel + FABP + sTNFRI 96.9 93.3 0.990 68. ICAM1 + PSel + LSel + FABP 100.0 95.0 0.997 69. VCAM1 + NGAL + FABP + 96.9 93.3 0.988 DDimer 70. VCAM1 + ICAM1 + LSel + FABP 99.0 95.0 0.993 71. VCAM1 + LSel + FABP + DDimer 92.9 95.0 0.971 72. VCAM1 + LSel + FABP + NGAL 96.9 93.3 0.991 73. FABP + NGAL + sTNFRI 95.9 93.3 0.986

(38) Biomarker concentrations can be determined by contacting the sample with a substrate having probes specific for each of the biomarkers included in the combination of biomarkers. Interactions between a biomarker and its respective probe can be monitored and quantified using various techniques that are well-known in the art. Biomarker concentrations are preferably measured in ng/ml.

(39) Preferably, a solid state device is used in the methods of the present invention, preferably the Biochip Array Technology system (BAT) (available from Randox Laboratories Limited). More preferably, the Evidence Evolution and Evidence Investigator apparatus (available from Randox Laboratories) may be used to determine the levels of biomarkers in the sample.

(40) Control values are derived from the concentration of corresponding biomarkers in a biological sample obtained from an individual or individuals who have not undergone a stroke. Such individual(s) who have not undergone stroke may be, for example, healthy individuals, individuals suffering from diseases other than stroke. Alternatively, the control values may correspond to the concentration of each of the biomarker in a sample obtained from the patient prior to the stroke event.

(41) For the avoidance of doubt, the term corresponding biomarkers means that concentrations of the same combination of biomarkers that are determined in respect of the patient's sample are also used to determine the control values. For example, if the concentration of ICAM-1 and L-selectin in the patient's sample is determined, then the concentration of ICAM-1 and L-selectin in the control sample will also be determined.

(42) In a preferred embodiment, each of the patient and control biomarker concentration values is inputted into one or more statistical algorithms to produce an output value that indicates whether a stroke has occurred.

(43) The cut-off concentrations or values are derived using a statistical technique; various different methods are available for developing statistical algorithms and are well-known to those skilled in the art. A standard method of biomarker statistical analysis is to use univariate methods to compare biomarker levels in various groups and highlight those biomarkers whose concentrations significantly differ across and between particular groups.

(44) The accuracy of statistical methods used in accordance with the present invention can be best described by their receiver operating characteristics (ROC). The ROC curve addresses both the sensitivity, the number of true positives, and the specificity, the number of true negatives, of the test. Therefore, sensitivity and specificity values for a given combination of biomarkers are an indication of the accuracy of the assay. For example, if a biomarker combination has sensitivity and specificity values of 80%, out of 100 patients which have stroke, 80 will be correctly identified from the determination of the presence of the particular combination of biomarkers as positive for stroke, while out of 100 patients who have not suffered a stroke 80 will accurately test negative for the disease.

(45) If two or more biomarkers are to be used in the diagnostic method a suitable mathematical model, such as logistic regression equation, can be derived. The logistic regression equation might include other variables such as age and gender of patient. The ROC curve can be used to assess the accuracy of the logistic regression model. The logistic regression equation can be used independently or in an algorithm to aid clinical decision making Although a logistic regression equation is a common mathematical/statistical procedure used in such cases and is preferred in the context of the present invention, other mathematical/statistical procedures can also be used.

(46) By way of example, a logistic regression equation applicable to the present invention (at a classification cut-off value of 0.5) for the biomarker combination ICAM-1, L-selectin, D-dimer and sTNFR1 for indication of stroke versus non-stroke (control) in a patient suspected of having had or currently experiencing a stroke is calculated as follows:

(47) $\mathrm{Probability}\mathrm{of}\mathrm{Stroke}=\frac{1}{1+e^{-\left(2.105+0.27\left[\mathrm{ICAM}\text{-}1\right]-0.018\left[L\text{-}\mathrm{selectln}\right]+0.071\left[D\text{-}\mathrm{dimer}\right]+8.945\left[\mathrm{sTNFRI}\right]\right)}}$

(48) where [ICAM-1], [L-selectin], [D-dimer] and [sTNFRI] are the concentrations of ICAM-1, L-selectin, D-dimer and sTNFRI measured in a blood sample taken from the patient (see number 118 of Table 1 for AUC value).

(49) If the outcome of carrying out the method of the invention is a positive diagnosis of stoke, then the patient should be treated accordingly. However, since the most appropriate and efficacious treatment varies according to the stoke sub-type, it is useful to be able to further differentiate between the three different sub-types following a positive diagnosis of stroke. For example, if the patient has suffered an IS, thrombolytic therapy such as tissue plasminogen activator (TPA) can be administered to break-down clots. Alternatively, if the patient has suffered a TIA, blood thinners such as warfarin and aspirin may be prescribed.

(50) Therefore, according to a further embodiment, the method according to the first aspect of the invention may optionally include carrying out additional steps for differentially diagnosing between IS and TIA as defined in the fourth aspect of this invention.

(51) A second related aspect of the invention provides a substrate comprising probes for at least two biomarkers selected from ICAM-1, L-selectin, P-selectin, VCAM-1, IL-6, sTNFR1, D-dimer and CRP for use in a method for diagnosing stroke in a patient according to the first aspect of the invention, wherein the substrate comprises a probe for at least one of ICAM-1, L-selectin, P-selectin and VCAM-1. Optionally, the substrate may further comprise a probe for h-FABP.

(52) Preferably the substrate has at least two probes immobilised thereon, more preferably three, four or more probes, wherein each probe is specific to an individual biomarker. As used herein, the term specific means that the probe binds only to one of the biomarkers of the invention, with negligible binding to other biomarkers of the invention or to other analytes in the biological sample being analysed. This ensures that the integrity of the diagnostic assay and its result using the biomarkers of the invention is not compromised by additional binding events.

(53) The substrate can be any substance able to support one or more probes, but is preferably a biochip. A biochip is a planar substrate that may be, for example, mineral or polymer based, but is preferably ceramic. When identifying the various biomarkers/proteins of the invention it will be apparent to the skilled person that as well as identifying the full length protein, the identification of a fragment or several fragments of a protein is possible, provided this allows accurate identification of the protein. Similarly, although a preferred probe of the invention is a polyclonal or monoclonal antibody, other probes such as aptamers, molecular imprinted polymers, phages, short chain antibody fragments and other antibody-based probes may be used.

(54) In a related third aspect of the invention, a substrate according to the second aspect is used in the method according to the first aspect of the invention.

(55) The present invention also provides kits comprising probes for at least two biomarkers selected from ICAM-1, L-selectin, P-selectin, VCAM-1, IL-6, sTNFR1, D-dimer and CRP, additional reagents, substrate/reaction surfaces and/or instructions for use. Such kits can be used to diagnose stroke in a patient a according to the first aspect of the invention.

(56) A fourth aspect of the present invention provides a method of aiding the diagnosis of ischaemic stroke in a patient suspected of having a stroke, comprising

(57) i) determining the concentration of VCAM-1 and one or more biomarkers selected from h-FABP, IL-6 and CRP in an in vitro sample obtained from the patient; and

(58) ii) establishing the significance of the concentration of the biomarkers by comparing the concentration value for each biomarker with a corresponding control value, wherein the corresponding control value is the concentration value for the corresponding biomarker determined from an in vitro sample obtained from a transient ischaemic attack patient or patients.

(59) Advantageously, this method can be used to differentially diagnose between ischemic stroke and a transient ischaemic attack.

(60) Each of the biomarkers or biomarker combinations can be used alone or as complementary biomarkers. Preferred biomarker combinations can be identified from the data in Table 4.

(61) The control values can be established by measuring the concentration of the biomarkers VCAM-1 and one or more h-FABP, IL-6 and CRP in one or more patients clinically diagnosed as having, or having had, a TIA. The diagnosis may be derived using techniques such as clinician examination and neuroimaging analysis (which would rule out the possibility of HS).

(62) Biomarker concentrations can be determined by contacting the sample with a substrate having probes specific for each of the biomarkers included in the combination of biomarkers. Interactions between biomarker and its respective probe can be monitored and quantified using various techniques that are well-known in the art.

(63) In a preferred embodiment, each of the patient and control biomarker concentration values is inputted into one or more statistical algorithms to produce an output value that indicates whether ischemic stroke has occurred.

(64) By way of example, the following concentrations (cut-off concentration) support the diagnosis of IS in the patient: h-FABP about 10 ng/ml; VCAM-1.gtoreq.about 570 ng/ml; CRP.gtoreq.about 30 .mu.g/ml; and IL-6.gtoreq.about 12 .mu.g/ml. However, biomarker normal or background concentrations may exhibit slight variation due to, for example, age, gender or ethnic/geographical genotypes. As a result, the cut-off value used may also slightly vary due to optimisation depending upon the target patient/population.

(65) The cut-off concentrations or values are usually derived using statistical techniques. A standard method of biomarker statistical analysis is to use univariate methods to compare biomarker levels in various groups and highlight those biomarkers whose concentrations significantly differ between particular groups. This is followed by Receiver Operator Characteristic (ROC) analysis.

(66) As described above in relation to the first aspect of the invention, a ROC curve is a preferred method of assessing the accuracy of a diagnostic test. It also provides a measure of the predictive power of the test in the form of the area under the curve (AUC), which can have values of 0.5 to 1.0. As a general rule, a test with a sensitivity of about 80% or more and a specificity of about 80% or more is regarded in the art as a test of potential use, although these values vary according to the clinical application.

(67) For discriminating between IS and TIA according to the method of the invention, a high specificity is crucial. For a given test, the closer the value of its AUC is to 1.0, the greater its predictive power. A logistic regression equation can be derived for any test involving two or more biomarkers. The logistic regression equation may include other variables, such as the age and gender of the patient. The ROC curve can be used to assess the accuracy of the logistic regression model. The logistic regression equation can be used independently or in an algorithm to aid clinical decision making. Although a logistic regression equation is a common mathematical/statistical tool, other mathematical/statistical procedures are well known in the art and can be used in accordance with the present invention.

(68) The outcome of carrying out the method according to this aspect of the invention will be a diagnosis of either IS or TIA and the patient should then be treated accordingly. If as a result of carrying out the method of the invention it is determined that the patient has suffered an IS, appropriate treatment such as thrombolytic therapy (e.g. tissue plasminogen activator (TPA)) can be administered to break-down clots. This may be administered in conjunction with other appropriate therapies, as determined by a physician. If as a result of carrying out the method of the invention it is determined that the patient has suffered a TIA, blood thinners such as warfarin and aspirin may be prescribed and administered.

(69) A related fifth aspect of the invention provides a substrate comprising probes for VCAM-1 and at least one other biomarker selected from h-FABP, IL-6 and CRP for use in a method for aiding the diagnosis of ischaemic stroke in a patient according to the present invention.

(70) The substrate comprises at least two, preferably three or four probes, each probe specific to an individual biomarker. As used herein, the term specific means that the probe binds only to one of the biomarkers of the invention, with negligible binding to other biomarkers of the invention or to other analytes in the biological sample being analysed. This ensures that the integrity of the diagnostic assay and its result using the biomarkers of the invention is not compromised by additional binding events.

(71) The substrate can be any substance able to support one or more probes, but is preferably a biochip. A biochip is a planar substrate that may be, for example, mineral or polymer based, but is preferably ceramic. When identifying the various biomarkers/proteins of the invention it will be apparent to the skilled person that as well as identifying the full length protein, the identification of a fragment or several fragments of a protein is possible, provided this allows accurate identification of the protein. Similarly, although a preferred probe of the invention is a polyclonal or monoclonal antibody, other probes such as aptamers, molecular imprinted polymers, phages, short chain antibody fragments and other antibody-based probes may be used.

(72) Preferably, a solid state device is used in the methods of the present invention, preferably the Biochip Array Technology system (BAT) (available from Randox Laboratories Limited). More preferably, the Evidence Evolution and Evidence Investigator apparatus (available from Randox Laboratories) may be used to determine the levels of biomarkers in the sample.

(73) In a related sixth aspect of the invention, a substrate according to the fifth aspect is used in the method according to the fourth aspect of the invention.

(74) The invention also provides kits comprising probes for VCAM-1 and at least one other biomarker selected from h-FABP, IL-6 and CRP, additional reagents, substrate/reaction surfaces and/or instructions for use. Such kits can be used to diagnose IS in a patient according to the third aspect of the invention.

(75) A further aspect of the invention is directed to the use of one or more of h-FABP, sTNFR1, IL-6, D-dimer, L-selectin, P-selectin, ICAM-1, VCAM-1 and CRP as complementary biomarkers of stroke or stroke sub-type. As complementary biomarkers they may be used for stroke/stroke sub-type diagnosis in conjunction with proteins such as DJ-1, BNP, S100 .beta., MMP-9, MCP-1, ApoC1, ApoC3, von Willebrand factor, NMDA receptors, ADMA and Lp-PLA2.

(76) The invention will now be described further by reference to the following non-limiting example.

EXAMPLE

(77) Patient Group

(78) The study consisted of 98 patients displaying stroke symptoms admitted to the Emergency Department of KAT General Hospital, Athens, Greece. Blood samples were taken at the time of admission and at days 1, 2, 3 and 7. The mean time from the onset of stroke symptoms and hospital admission was 3.2 hours. The mean age of the patients was 75.2 years (standard deviation 9.4). Clinician evaluation (using criteria highlighted in the Background section) and neuroimaging techniques identified 44 ischaemic stroke (IS), 25 haemorrhagic stroke (HS), 29 transient ischaemic attack (TIA); 60 healthy subjects served as controls (C).

(79) Sample Analysis

(80) The following proteins were tested against EDTA plasma samples of blood obtained from the patients of the study group: ICAM-1, VCAM-1, E-selectin, L-selectin, P-selectin, IL-6, h-FABP, CRP, D-dimer, sTNFR1, TM and NGAL. The proteins were detected and quantified using multiplexed biochips incorporating biomarker-specific antibodies and the Evidence Investigator (Randox Laboratories Ltd, Crumlin, UK). The simultaneous immunoassays were performed according to manufacturer's instructions. A nine-point calibration curve and three reference controls were assayed for each biomarker to allow validation of results. For CRP IS vs TIA analysis, samples were diluted tenfold.

(81) Statistical Analysis

(82) The Kruskal-Wallis test (significance limit 0.05) was used to identify analytes that were differentially expressed across the four groups (IS, HS, TIA and C). Post-hoc comparisons between the different groups were carried out using the Holm's sequential Bonferroni adjustment. Mann-Whitney test was used to compare All Stroke and Control. The results are shown in FIGS. 1-13.

(83) Single biomarkers were subject to ROC curve analysis to assess sensitivity and specificity. Logistic regression was used to model the dependency of stroke and stroke subtype upon the concentration of various combinations of biomarkers followed by ROC curve analysis to assess the model's classification accuracy. The results are shown in FIGS. 1-22.

(84) Results

(85) Tables 1 and 2 detail the sensitivity, specificity and statistical power (AUC) of exemplary combinations of biomarkers for diagnosing stroke (all stroke v control). By combining two or more biomarkers selected from ICAM-1, VCAM-1, L-selectin, P-selectin, IL-6, CRP, D-dimer and sTNFR1 for testing the occurrence of stroke, a test with high diagnostic performance is achieved. Also, it has been found for the first time that the blood concentration of the proteins VCAM-1, IL-6, h-FABP and CRP are able to discriminate between IS and TIA. Critical to the usefulness of the invention is the high discriminatory power of the biomarker(s). A test which aims to discriminate IS from TIA, must have a high specificity as possible so as to rule out TIA.

(86) If TIA cannot be ruled out by the biomarker(s), then the diagnosis will be of either an IS or TIA i.e. it will not be able to discriminate between these two stroke subtypes. Therefore, the specificity of the test should be as close to 100% as possible. The sensitivity of the test should be of sufficient magnitude to be of value to the patient and be economically viable. Table 3 shows the statistical analysis of analyte concentrations in patients who suffered TIA, IS and HS using Mann-Whitney and Kruskal-Wallis tests. Table 4 shows the ROC curve analysis (sensitivity and specificity values) of individual and grouped biomarkers for IS vs TIA. As can be seen, each of the biomarkers has 100% specificity and equal or greater sensitivity than the commonly used CAT scan. This facilitates clinical diagnosis and informs subsequent treatment decisions of suspected stroke patients in an economical and expeditious manner.

(87) TABLE-US-00003 TABLE 3 Analyte IS v TIA TOA v C IS vC HS v C HS v IS All v C VCAM-1 P < 0.0001 ns P < 0.001 P < 0.001 ns P < 0.0001 ICAM-1 ns P < 0.01 P < 0.001 P < 0.001 ns P < 0.0001 E-selectin ns ns ns ns ns ns L-selectin ns P < 0.001 P < 0.001 P < 0.001 ns P < 0.0001 P-selectin ns P < 0.001 P < 0.001 P < 0.001 ns P < 0.001 IL-6 P < 0.01 P < 0.001 P < 0.001 P < 0.001 ns P < 0.001 h-FABP P < 0.01 P < 0.001 P < 0.001 P < 0.001 ns P < 0.001 CRP P < 0.05 P < 0.001 P < 0.001 P < 0.001 P < 0.05 P < 0.001 D-dimer P < 0.05 P < 0.001 P < 0.001 P < 0.01 ns P < 0.001 NGAL ns ns ns ns ns ns sTNFR1 P < 0.05 P < 0.001 P < 0.001 P < 0.001 ns P < 0.001 TM ns ns ns ns ns ns [All stroke = TIA + IS + HS; C = control; ns = not significantly different at the 5% level (P > 0.05)]

(88) TABLE-US-00004 TABLE 4 Ischemic Stroke (IS) Biomarker(s) AUC % Sensitivity % Specificity VCAM-1 0.755 24.88 100 IL-6 0.727 23.26 100 h-FABP 0.700 20.45 100 VCAM-1 + IL-6 0.801 30.23 100 VCAM-1 + IL-6 + CRP 0.818 34.88 100 VCAM-1 + CRP 0.793 34.09 100 VCAM-1 + h-FABP 0.811 31.82 100 VCAM-1 + h-FABP + IL-6 0.812 31.82 100 VCAM-1 + h-FABP + CRP 0.816 34.09 100 VCAM-1 + h-FABP + IL-6 + CRP 0.820 34.09 100
Clinical Use of the Invention

(89) Use of the invention can be envisaged in the following scenarios relating to an individual who suffers a stroke-like event:

(90) i) in transit to the hospital a biological fluid sample is taken from the individual and tested for all stroke types using biomarkers of the inventiona positive stroke result is confirmed and further stratified into HS or IS/TIA following examination of the individual by a clinician and analysis using a CAT scan. If HS is ruled out, a further biomarker test is implemented to delineate IS/TIA. ii) at the hospital examination by a clinician is preceded by stroke biomarker analysis of a biological fluid sample taken from the individual in association with a CAT scan examinationif HS is ruled out, a further biomarker test is implemented to delineate IS/TIA.

(91) Abbreviations

(92) IL-6interleukin-6 ICAM-1intracellular adhesion molecule-1 VCAM-1vascular cell adhesion molecule-1 CRPC-reactive protein h-FABPhuman fatty acid binding protein sTNFRsoluble TNF.alpha. receptor TMthrombomodulin NGALneutrophil-associated gelatinase lipocalin MMP-9matrix metalloproteinase-9 BNPbrain natriuretic peptide ADMAasymmetric dimethylarginine Lp-PLA2lipoprotein-associated phospholipase A2