Temperature-sensitive attenuated FMDV strains, construction method and application thereof
10918710 ยท 2021-02-16
Assignee
Inventors
Cpc classification
C12N7/00
CHEMISTRY; METALLURGY
C12N15/113
CHEMISTRY; METALLURGY
C12N7/04
CHEMISTRY; METALLURGY
C12N2770/32121
CHEMISTRY; METALLURGY
C12N2770/32122
CHEMISTRY; METALLURGY
C12N2770/32134
CHEMISTRY; METALLURGY
International classification
C12N15/113
CHEMISTRY; METALLURGY
C12N7/00
CHEMISTRY; METALLURGY
Abstract
A temperature-sensitive attenuated FMDV strain, construction method and applications thereof. The construction method of the temperature-sensitive attenuated FMDV strain is as follows. Mutating a cytosine on K region loop of IRES domain 4 of an FMDV genome to a guanine or an adenine to obtain the temperature-sensitive attenuated FMDV strain, or replacing a K region of IRES domain 4 of an FMDV genome with a K region of IRES domain 4 of a bovine rhinovirus genome to obtain the temperature-sensitive attenuated FMDV strain.
Claims
1. A construction method of a temperature-sensitive attenuated FMDV strain, comprising: constructing a FMDV full-length cDNA infectious cloning plasmid, performing a site-directed mutagenesis to an IRES region of the FMDV full-length cDNA infectious cloning plasmid, obtaining a FMDV genomic RNA by in vitro transcription, and transfecting the FMDV genomic RNA into cells and culturing the cells containing the FMDV genomic RNA at temperatures to rescue the temperature-sensitive attenuated FMDV strain; wherein a cytosine at 351-site on K region loop of IRES domain 4 of the FMDV genomic RNA obtained by the in vitro transcription is mutated to a guanine or an adenine during the site-directed mutagenesis, a base sequence of the K region loop after mutation is .sup.351GUUUAA.sup.356 or .sup.351AUUUAA.sup.356.
2. A temperature-sensitive attenuated FMDV strain obtained by the construction method according to claim 1, wherein a microbial deposit number of a full-length cDNA infectious cloning plasmid for rescuing the temperature-sensitive attenuated FMDV strain is: CGMCC NO.13148.
3. A mutant IRES contained in the temperature-sensitive attenuated FMDV strain according to claim 2, wherein the mutant IRES has the nucleotide sequence of SEQ ID No: 1.
4. A construction method of a temperature-sensitive attenuated FMDV strain, comprising: constructing a FMDV full-length cDNA infectious cloning plasmid, obtaining a FMDV genomic RNA by in vitro transcription, and transfecting the FMDV genomic RNA into cells to rescue the temperature-sensitive attenuated FMDV strain; wherein an IRES domain 4 of the FMDV genomic RNA obtained by the in vitro transcription is replaced with an IRES domain 4 of a bovine rhinovirus genomic RNA.
5. A temperature-sensitive attenuated FMDV strain obtained by the construction method according to claim 4, wherein a microbial deposit number of a full-length cDNA infectious cloning plasmid used for rescuing the temperature-sensitive attenuated FMDV strain is: CGMCC NO.13149.
6. A chimeric IRES sequence obtained by replacing an IRES domain 4 of a foot-and-mouth disease virus genomic RNA with an IRES domain 4 of a bovine rhinovirus genomic RNA, wherein the chimeric IRES sequence has the nucleotide sequence of SEQ ID No: 2.
7. A construction method of a temperature-sensitive attenuated FMDV strain, comprising: constructing a FMDV full-length cDNA infectious cloning plasmid, obtaining a FMDV genomic RNA by in vitro transcription, and transfecting the FMDV genomic RNA into cells to rescue the temperature-sensitive attenuated FMDV strain; wherein a K region of an IRES domain 4 of the FMDV genomic RNA obtained by the in vitro transcription is replaced with a K region of IRES domain 4 of a bovine rhinovirus genomic RNA.
8. A temperature-sensitive attenuated FMDV strain obtained by the construction method according to claim 7, wherein a microbial deposit number of a full-length cDNA infectious cloning plasmid used for rescuing the temperature-sensitive attenuated FMDV strain is: CGMCC NO.13150.
9. A chimeric IRES sequence obtained by replacing a subdomain K of FMDV IRES domain 4 with a subdomain K of IRES domain 4 of a bovine rhinovirus, wherein the chimeric IRES sequence has the nucleotide sequence of SEQ ID No: 3.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION OF THE EMBODIMENTS
(11) The present invention will be further described below with reference to the specific embodiments, and the advantages and features of the present invention will become clearer with the description. However, it should be understood that the embodiments are merely illustrative rather than intended to limit the scope of the present invention. It should be understood by thoseof ordinary skill in the art that the details and forms of the present invention may be modified or substituted without departing from the spirit and scope of the present invention, however, such modifications or substitutions fall within the scope of the present invention.
(12) 1. Materials and Methods
(13) 1.1 Cells, Vectors and Viruses
(14) BHK-21 cells and IBRS-2 cells were cultured at 37 C. under the condition of containing 5% CO.sub.2, and the culture medium was DMEM containing 10% foetal bovine serum (FBS). pOK-12 vector was a generous gift from the Messing (1991); type-O FMDV O/YS/CHA/05 strain (GenBank accession number: HM008917) and the infectious cDNA clone pYS of the virus can be obtained by the method disclosed in the literature (Chinese Patent Publication No.: CN101838658A (ZL201010160669.9)); an infectious cDNA clone of the type-Asia 1 FMDV Asia1/YS/CHA/05 strain (GenBank accession number: GU931682) can be obtained by the method disclosed in the literature (Chinese Patent Publication No. CN101724636A (ZL200810171258.2)); type-A FMDV A/VN/03/2009 strain (GenBank accession number: GQ406249) was kept by the inventor's laboratory.
(15) 1.2 Primers
(16) According to the bovine rhinovirus IRES gene sequence (GenBank accession number: EU236594) and the genomic sequence of the FMDV O/YS/CHA/05 strain, the primers (Tab. 1) used to amplify different domains in IRES of two viruses and site-directed mutagenesis primers (Tab. 2) were designed and were synthesized in Shanghai Yingjun Biotechnology Co., Ltd.
(17) TABLE-US-00001 TABLE1 PrimersforconstructingIRES chimericvirusandsequencesthereof Primer Sequence(5.fwdarw.3) Sequence(5.fwdarw.3) 4N-1:U SEQIDNO:4 CGCAGATCTTAATACGACTCACTATAGG TTGAAAGGGGGCGTTAGGGTCTC 4N-1:L SEQIDNO:5 CTCGGGGTACCTGAAGGGCATCCTTAGG CTGTCACCAGTGGTTGAGTACCAGTATC 4N-2:U SEQIDNO:6 TGGTGACAGCCTAAGGATGCCCTTCAGG TACCCCGAGGTAACACGCGAC 4N-2:L SEQIDNO:7 GGCCTCCGGTCACCTATTCAGCTTAGAC GTTTTTTAAACCAGGCGCTTTT 4N-3:U SEQIDNO:8 CGGAGGCCGGCACCTTTCCTTCGAACAA CTGTCTTTAACC 4N-3:L SEQIDNO:9 GAGGATATCGCTAGCTTTGAAAACCAGT CGTTG 4J-1:U SEQIDNO:10 CGCAGATCTTAATACGACTCACTATAGG TTGAAAGGGGGCGTTAGGGTCTC 4J-1:L SEQIDNO:11 TTGTTACCCCGGGGTACCTGGAGGGCAT CCTTAGCCTGTCACCAGT 4J-2:U SEQIDNO:12 CGCAGATCTTAATACGACTCACTATAGG TTGAAAGGGGGCGTTAGGGTCTC 4J-2:L SEQIDNO:13 TCCTCAGATCCCGGGTGTCACTTGTTAC CCCGGGGTACCT 4J-3:U SEQIDNO:14 CACCCGGGATCTGAGGAGGGGACTGGGG CTTCTTTAAAAGCG 4J-3:L SEQIDNO:15 GAGGATATCGCTAGCTTTGAAAACCAGT CGTTG 4K-1:U SEQIDNO:16 CGCAGATCTTAATACGACTCACTATAGG TTGAAAGGGGGCGTTAGGGTCTC 4K-1:L SEQIDNO:17 GCTTTTTAAACTACGTAAAGTAGTCCCC TTCTCAGATCCCGAGTGT 4K-2:U SEQIDNO:18 CTTTACGTAGTTTAAAAAGCTTCTACGC CTGAATAGGTGACC 4K-2:L SEQIDNO:19 GAGGATATCGCTAGCTTTGAAAACCAGT CGTTG
(18) TABLE-US-00002 TABLE2 Primersandsequences forsite-directedmutagenesis Primer Sequence(5.fwdarw.3) Sequence(5.fwdarw.3) Loop-U SEQIDNO:20 CTCGGGATCTGAGAAGGGGA CTGGGGCTTTTTACAAGCGC CTGGTTTAAAAAGCTTC Loop-L SEQIDNO:21 GAAGCTTTTTAAACCAGGCG CTTGTAAAAAGCCCCAGTCC CCTTCTCAGATCCCGAG Stem-U SEQIDNO:22 CACTCGGGATCTGAGAAGGG GACTACCTTTAAGTAGTTTA AAAAGCTTCTACGCCTG Stem-L SEQIDNO:23 CAGGCGTAGAAGCTTTTTAA ACTACTTAAAGGTAGTCCCC TTCTCAGATCCCGAGTG C351G-U SEQIDNO:24 CTCGGGATCTGAGAAGGGGA CTGGGGCTTGTTTAAAAGCG CCTGGTTTAAAAAGCTTC C351G-L SEQIDNO:25 GAAGCTTTTTAAACCAGGCG CTTTTAAACAAGCCCCAGTC CCCTTCTCAGATCCCGAG C351A-U SEQIDNO:26 CTCGGGATCTGAGAAGGGGA CTGGGGCTTATTTAAAAGCG CCTGGTTTAAAAAGCTTC C351A-L SEQIDNO:27 GAAGCTTTTTAAACCAGGCG CTTTTAAATAAGCCCCAGTC CCCTTCTCAGATCCCGAG C351T-U SEQIDNO:28 CTCGGGATCTGAGAAGGGGA CTGGGGCTTTTTTAAAAGCG CCTGGTTTAAAAAGCTTC C351T-L SEQIDNO:29 GAAGCTTTTTAAACCAGGCG CTTTTAAAAAAGCCCCAGTC CCCTTCTCAGATCCCGAG InsertC351-U SEQIDNO:30 CGGGATCTGAGAAGGGGACT ACCTTTACGTAGTTTAAAAA GCTTCTACGCCTGAATAG InsertC351-L SEQIDNO:31 CAGGCGTAGAAGCTTTTTAA ACTACGTAAAGGTAGTCCCC TTCTCAGATCCCGAGTGT deltaC351-U SEQIDNO:32 CTCGGGATCTGAGAAGGGGA CTGGGGCTTTTTAAAAGCGC CTGGTTTAAAAAGCTTC deltaC351-L SEQIDNO:33 GAAGCTTTTTAAACCAGGCG CTTTTAAAAAGCCCCAGTCC CCTTCTCAGATCCCGAG TypeA-G351-U SEQIDNO:34 CTCGGGATCTGAGAAGGGGA CTGGGGCTTGTATAAAAGCG CCCAGTTTAAAAAGCTTC TypeA-G351-L SEQIDNO:35 GAAGCTTTTTAAACTGGGCG CTTTTATACAAGCCCCAGTC CCCTTCTCAGATCCCGAG Asia1-G351-U SEQIDNO:36 CTCGGGATCTGAGAAGGGGA CCGGGACTTGTTTAAAAGTG CCCGGTTTAAAAAGCTTC Asia1-G351-L SEQIDNO:37 GAAGCTTTTTAAACCGGGCA CTTTTAAACAAGTCCCGGTC CCCTTCTCAGATCCCGAG
1.3 Construction of IRES-Chimeric FMDV Infectious Clone Plasmids
(19) An IRES-chimeric FMDV full-length infectious cDNA clone, in which the subdomain N of FMDV IRES domain 4 was replaced with that of the BRBV, was constructed using fusion PCR method. The specific method is as follows: first, using plasmid pYS as a template, 4N-1:U and 4N-1:L as primers to amplify fragment A; using synthetic BRBV IRES gene as a template, 4N-2:U and 4N-2: L as primers to amplify fragment B; and using pYS plasmid as a template, 4N-3:U, 4N-3:L as primers to amplify fragment C. Using the purified PCR amplified fragments A, B, and C as templates, and 4N-1:U and 4N-3:L as primers to perform fusion PCR to amplify the FMDV 5 gene fragment containing partial BRBV IRES substitution, the fragment size is approximately 1.9 Kb. The fragment was recovered from the agarose gel, double digested with Bgl II and Nhe I, and cloned into pYS vector, the correct clone identified by sequencing was named p(dN). Similarly, the full-length FMDV infectious cDNA cloning plasmids containing the BRBV IRES domain4 subdomains J and K were constructed respectively using the primers in Tab. 1, and named p(dJ) and p(dK).
(20) 1.4 Construction of A-Type FMDV Full-Length cDNA Infectious Clone
(21) According to the results of whole genome sequencing of foot-and-mouth disease virus A/QSA/CHA/09 strain, the full length of the genome was synthesized by the method of artificially synthesizing genes, and the T7 promoter sequence and Spe I restriction site (5act agt TAA TAC GAC TCA CTA TAGGG 3; SEQ ID NO: 40) were introduced at the 5 end of the whole genome cDNA, an EcoR V restriction site (gat atc) was introduced at the 3 end of the whole genome cDNA, which is used for linearization of whole genome cDNA. After restriction digested with restriction endonucleases Spe I and EcoR V, the whole genome was cloned into the low copy vector pOK12, the constructed infectious cDNA clone was named pQSA.
(22) 1.5 Site-Directed Mutagenesis
(23) According to the instructions of Quik Change Site-Directed Mutagenesis Kit, through the PCR technique, the mutation sites were introduced into the infectious cDNA clones using the primers in Tab.2, respectively. PCR amplification procedure: 94 C. for 4 min; 94 C. for 30 s, 68 C. for 9 min, for 18 cycles; 72 C. for 10 min. After the amplification is completed, purifying the PCR products. Degrading the methylated template of the PCR products by Dpn I (at 37 C. for 1 h), transferring the treated PCR products into DH5a competent cells, selecting the bacterial clones, and the correct recombinant plasmids identified by sequencing were named pK(loop), pK(stem), pC351G, pC351A, pC351T, pC351, pIn-351C, pA-rC351G, pAsia1-rC351G.
(24) 1.6 Rescue of the Virus
(25) After restriction digested and linearized by restriction endonuclease EcoR V, the recombinant plasmids p(dN), p(dJ) and p(dK), pK(loop), pK(stem), pC351G, pC351A, pC351T, pC351, pIn-351C, pA-rC351G, pAsia1-rC351G were subjected to the in vitro transcription according to the instruction of RiboMAX Large Scale RNA Production Systems-T7 kit. The reaction mixture is: 6 L 25 mmol/L rNTP, 4 L 5 buffer, 2 L T7 RNA polymerase, 8 L (2 g) EcoRV linearized recombinant plasmid, a total volume of 20 L. After thoroughly mixed, the reactants were incubated at 37 C. for 2.5 h, digested with RNase-Free DNase for 15 min, removing the DNA template, and the transcript products were purified by phenol chloroform extracting method. When BHK-21 cells in 6-well plates grew to 60%-90% monolayer, washing the cells twice with PBS and adding 1.5 mL of DMEM containing 2% FBS. Transfecting the RNA obtained by in vitro transcription into BHK-21 cells to rescue the virus according to the transfection kit instructions of Effectene Transfection Reagent (Qiagen). Culturing the transfected cells at 37 C. under the condition of 5% CO.sub.2, observing cytopathicity effect (CPE), the virus was harvested in about 3 days, after repeatedly freezing and thawing for 3 times, the virus was inoculated into fresh BHK-21 cells until the virus produced a stable CPE. The correct mutant strains of the recombinant virus identified by full-length genome sequencing were used for subsequent experiments. The rescued viruses were named rdN, rdJ, rdK, rK(loop), rK(stem), rC351G, rC351A, rIn-351C, A-rC351G, and Asia1-rC351G, respectively.
(26) 1.7 One-Step Growth Curve
(27) Wild-type FMDV, recombinant IRES chimeric virus and IRES site-directed mutant virus were inoculated into BHK-21 and IBRS-2 cells at a MOI of 0.05, and adsorbed for 1 h at 33 C., 37 C., 41 C., respectively, then washed with PBS to remove the unadsorbed virus, and DMEM containing 2% FBS was added to maintain the culture, the virus was harvested 4 h, 8 h, 12 h, 16 h, 20 h, 24 h, 28 h, 32 h, 40 h after inoculation, the TCID.sub.50 titers of the virus harvested at different time points were measured, and the average value of virus TCID.sub.50 titers was calculated after repeating the measurement three times at each time point. The one-step growth curve of virus replication at different temperatures was plotted with the time of virus infecting cells as the abscissa and the logarithmic value of TCID.sub.50 titers at different time points as the ordinate.
(28) 1.8 Virus Passage and Genetic Stability Test
(29) The wild-type FMDV, IRES-chimeric virus rK (loop), the point mutation viruses rC351A and rC351G were inoculated into BHK-21 cells to react for 1 h, washing with PBS twice, and adding DMEM containing 2% FBS to maintain the culture. Harvesting the viruses until the appearance of CPE. Passing down to continuous passage for 20 passages after repeatedly freezing and thawing for 3 times. Extracting the RNA of viruses every 5 passages for RT-PCR amplification and sequencing.
(30) 1.9 FMDV Luciferase Replicons and Luciferase Assay
(31) The 96-well plates of the BHK-21 cells and IBRS-2 cells transfected with the replicon RNA of IRES-chimeric viruses were maintained at 33 C., 37 C. or 41 C. Collecting and lysing the cells after 12 h, and measuring the Rluc activity on a GloMax luminometer according to the instructions of Renilla luciferase assay kit of Renilla-Glo Luciferase Assay System, the reaction system is that per 10 L of cell lysate buffer was added with 50 L of reaction solution, parameters are: 2s of read-ahead delay, and 10s of detection time.
(32) 1.10 Western Blot
(33) BHK-21 cells or IBRS-2 cells inoculated with 100 TCID.sub.50 wild-type FMDV and its recombinant virus were cultured for 12 h and then harvested, after lyse treatment, the protein samples were separated by SDS-PAGE, and then transferred to a nitrocellulose membrane. After blocking with 5% skim milk, the membrane was incubated with the primary antibodies MAb 4B2 (diluted at a ratio of 1:1000) at 37 C. for 1 h. After washing with PBST, HRP-labeled rabbit anti-mouse IgG (diluted at a ratio of 1:5000) was added as the secondary antibody, and reacted at 37 C. for 1 h, the DAB solution was added for color development after washing. In addition, the internal reference selected -Actin antibody (diluted at a ratio of 1:1000) as the primary antibody, and HRP-labeled goat anti-mouse IgG (diluted at a ratio of 1:10000) was used as the secondary antibody.
(34) 1.11 Virulence Test in Suckling Mice
(35) The virus was serially gradient diluted in 10-fold with sterilized PBS, and 3-day-old BALB/c suckling mice were selected and randomly divided into groups with 5 mice in each group. Each strain was inoculated successively with virus diluted in 3-gradient, each suckling mouse was injected cervicodorsally with 200 L of virus solution, and the negative control group were injected with the equal amount of PBS. After continuous observation for 7 days, the survival curve of the suckling mice was plotted with the death time of the suckling mice as the abscissa and with the survival rate of the suckling mice as the ordinate.
(36) 1.12 Virulence Test, Safety Test, Vaccination and Challenge Test in Pig
(37) Virulence Test
(38) Twenty of 20-30 kg FMDV serum antibody-negative healthy pigs were randomly divided into 4 groups with 5 in each group. Three pigs in one group were injected intramuscularly at cervical part with wild-type viral strain FMDV (WT) at a dose of 10.sup.5 TCID.sub.50/pig, in the other three groups, three pigs in each group were injected intramuscularly at cervical part with IRES mutant strains rC351G, FMDV (R4) or rdK at a dose of 10.sup.6 TCID.sub.50/pig, 1 day post-inoculation (dpi), two pigs were placed in each group as cohabiting animals. Within 7 days after inoculation, measuring the body temperature of each pig, observing the clinical symptoms, and collecting the nasal swabs, oral swabs and blood.
(39) Safety Test
(40) Nine of 30-40 kg FMDV serum antibody-negative healthy feeder pigs were randomly divided into 3 groups with 3 pigs in each group. The pigs in the first group were injected at posterior auricular muscle with rC351G attenuated strain at a dose of 10.sup.6 TCID.sub.50/pig. Five days after the inoculation, slaughtering the first group of pigs, mixing and homogenizing the tonsil tissue, plasma, and oral and nasal secretion, and injecting 2 mL of the mixture into the second group of pigs. Similarly, slaughtering the second group of pigs after inoculated for 5 days, mixing and homogenizing the same tissues and samples, and injecting 2 mL of the mixture into the third group of pigs. Measuring the body temperature of each group of pigs, observing the clinical symptoms, and collecting the nasal swabs, oral swabs and blood daily after inoculation. And the third group of pigs had blood sampling performed 3 d, 7 d, 14 d, and 21 d after inoculation.
(41) Vaccination and Challenge Test
(42) In order to evaluate the immune-protective effect of the attenuated strain rC351G, 3 pigs were inoculated with this mutant, 2 pigs inoculated with PBS were used as the challenge controls. At 21 days post-vaccination, the O-type FMDV strain O/Mya-98/CHA/2010 which is currently prevalent in China was used to challenge the pigs to evaluate the immune-protective effect, the specific method is as follows:
(43) Five of 20-30 kg FMDV serum antibody-negative healthy feeder pigs, 3 pigs were injected intramuscularly at cervical part with rC351G attenuated strain at a dose of 10.sup.6 TCID.sub.50/pig, 2 pigs were injected intramuscularly at cervical part with 1 mL PBS as the controls. The immunized group and the control group were challenged at 21 days post-vaccination, each pig was injected intramuscularly at cervical part with O/Mya-98/CHA/2010 virus at a dose of 1000 ID.sub.50/pig. Within 7 days after challenge, measuring the body temperature of each pig, observing the clinical symptoms, and collecting the nasal swabs, oral swabs and blood every day.
(44) 1.121 Clinical Symptoms Observation
(45) Carefully observing and recording the clinical incidence of pigs daily, and performing the clinical scores according to the method described by Pacheco and Mason et al. (Pacheco and Mason et al., J. Vet. Sci., 2010): Clinical scores were based on the number of the sites containing vesicular lesions (three scores for each hoof, nose, tongue or lips), with a maximum score of 20 points.
(46) 1.122 Detection of the Viremia and Viral Shedding
(47) The total RNA of the fresh nasal, oral swabs and blood samples were extracted using TRIZOL method, and were reversely transcribed using Oligo (dT.sub.15) primer to obtain the cDNA used as a template, and the fluorescent quantitative PCR detection was performed using the FMDV specific primers (3DF: 5 GGA TGC CGT CTG GTT GTT 3 (SEQ ID NO: 38); 3DR: 5 CGT AGG AGA TCA TGG TGT AAG AGT 3 (SEQ ID NO: 39)). The specific operation of the fluorescent quantitative PCR is performed according to the kit instructions of Platinum SYBR Green qPCR Super Mix-UDG with ROX (Invitrogen), and the content of genomic RNA of virus in the samples are calculated by a standard curve. The background value of FMDV RNA amplified by using the blood, oral and nasal swab samples of preclinical healthy pigs through PCR amplification was 2.6 (
(48) 1.123 FMDV Specific Antibody Detection
(49) The whole blood of pig was collected every day, the serum fraction separated was used to detect FMDV antibodies, and operate according to the instructions of the 0-type FMDV antibody liquid-phase blocking ELISA kit produced by the Foot and Mouth Disease Reference Laboratory of Lanzhou Veterinary Research Institution. Setting two wells for each serum dilution plate at a ratio of 1:2 and 1:4 as the negative controls, four wells of 1:16, 1:32, 1:64, 1:128 as the positive controls, and the virus antigen was set 4 wells as the controls. The serum to be tested is successively diluted from 1:8 to 1:1024 by double dilution method. Each step of the reaction was carried out according to the instructions. After the reaction was terminated, the OD.sub.450 nm values were measured by a microplate reader.
(50) 1.124 Antibody Detection of FMDV Non-Structural Protein 3ABC
(51) The whole blood of pig was collected every day, the serum fraction separated was used to detect the antibodies of FMDV non-structural protein 3ABC according to the instructions of the 3ABC-I-ELISA of the Foot-and-Mouth Disease Reference Laboratory of Lanzhou Veterinary Research Institution. Diluting serum in 96-well ELISA plates, and setting two wells for the negative and positive controls, respectively. Diluting 6 L of serum into 120 L of serum diluent with a dilution of 1:21, one repetition is set per diluted serum, and diluting 46 serum per plate, adding dropwise the diluted serum to the ELISA coated plate. After reacting for a certain period of time, various enzyme labeling reagents and substrates were sequentially added, and finally the absorbance values (OD450.sub.nm value) at a wavelength of 450 nm were measured by a microplate reader. Antibody titer=(OD.sub.450 nm sample OD.sub.450 nm negative)/(OD.sub.450 nm positive OD.sub.450 nm negative), if this value >0.2, it is judged as positive.
(52) 1.125 Micro-Neutralization Assay
(53) First, the TCID.sub.50 of FMDV O/YS/CHA/05 virus was determined using BHK-21 cells, and then the micro-neutralization test was carried out by using the method of fixing virus diluted serum. Inactivating the serum at 56 C. for 30 min, and performing doubling dilution using PBS. Mixing 100 TCID.sub.50 of virus with different dilutions of serum in equal volume, and incubating for 1 h at 37 C.; the above serum-virus mixtures (100 L/well) were inoculated into BHK-21 cells respectively, 8-well repeats per titer, culturing at 37 C. in a 5% CO.sub.2 incubator, observing the CPE daily, and making the final determination after 72 hours. In addition, setting the virus, positive serum and normal cell controls. The virus neutralization titer was calculated according to the CPE by using the Reed-Muench method (Reed and Muench., 1938). The virus neutralization titer was the serum dilution concentration that can protect 50% of BHK-21 cells from CPE.
(54) 1.126 Indirect ELISA
(55) The FMDV serum antibody-negative pigs were screened using the indirect ELISA methods to detect three serotypes (Type-O, Type-A, and Type-Asia1) of FMDV antibody. The specific steps are as follows: using the inactivated and purified FMDV whole virus as an antigen, coating the 96-well ELISA plate, and adding 5% skim milk for sealing overnight at 4 C.; washing 3 times with PBST, and then adding the serum to be tested, 100 L per well, incubating at 37 C. for 1 h, washing 3 times with PBST, and adding 100 L of HRP-labeled goat anti-porcine IgG (1:5000) per well as a secondary antibody (Sigma), incubating at 37 C. for 1 h; washing 3 times with PBST, adding 50 L/well of TMB substrate color-developing solution, performing light-proof reaction at 37 C. for 15 min; adding 50 L/well of 2M H.sub.2SO.sub.4 to stop the reaction, and finally determining the OD.sub.450 nm value by microplate reader.
(56) 2. Results
(57) 2.1 IRES Chimeric Virus FMDV(R4) is an Attenuated Mutant
(58) The present invention uses the Type-O FMDV reverse genetic operating system to replace the domain 4 of FMDV IRES with the corresponding domain of BRBV IRES, and successfully constructs and rescues the IRES chimeric mutant FMDV(R4). The suckling mouse is a well-recognized animal model for evaluating the virulence of FMDV, thus 3-day-old suckling mice are used as models, and the virulence of the IRES chimeric virus FMDV(R4) and its wild-type virus FMDV(WT) have been determined and compared, the test results are shown in
(59) 2.2 FMDV(R4) is a Temperature-Sensitive Mutant
(60) To investigate the mechanism of FMDV virulence attenuation caused by replacement of IRES domain 4, we firstly analyzed the secondary structure stability of the domain 4-chimeric IRES compared to wild-type FMDV IRES using M-fold software (version 3.2). As calculated by M-fold, the G value of FMDV(R4) IRES was higher (185.40 kcal/mol) than that of FMDV(WT) (196.60 kcal/mol), indicating that the structure of FMDV(R4) IRES was less stable. In addition, BRBV replication is normally confined to the cooler upper respiratory tract epithelium, and is naturally temperature-sensitive when grew at elevated temperatures. Getting together we have reason to assume that the FMDV(R4), in which the IRES domain 4 was replaced by that of BRBV, is a temperature-sensitive and thus attenuated mutant.
(61) In order to investigate whether the replication of FMDV(R4) is temperature-sensitive, one-step growth curves of FMDV(R4) at different temperatures in hamster-derived BHK-21 and porcine-derived IBRS-2 cells were plotted. The results are shown in
(62) 2.3 the K Region of IRES Domain 4 Determines the Temperature-Sensitive Attenuated Phenotype of FMDV(R4)
(63) In order to further analyze the molecular determinants of the temperature-sensitive attenuated phenotype of the IRES chimeric virus FMDV(R4), the present invention uses the type-O FMDV reverse genetic system to replace the J, K, and N subdomains in domain 4 of FMDV IRES with the corresponding subdomains of BRBV IRES. Three IRES J, K and N subdomains chimeric FMDV mutant were successfully constructed and rescued, respectively named rdJ, rdK and rdN. The replication dynamics of the three chimeric viruses at different temperatures were determined and analyzed, and the one-step growth curves were plotted. The test results are shown in
(64) 2.4 the Loop Structure of the K Region of the IRES Domain 4 Determines the Temperature-Sensitive Attenuated Phenotype of FMDV(R4)
(65) The K regions of the IRES domain 4 of FMDV and BRBV are respectively composed of a stem-loop structure. In order to determine the region in the stem-loop structure of the K region associated with the temperature-sensitive attenuated phenotype of FMDV, the present invention uses the reverse genetic system to replace the stem or loop of the K region of the FMDV IRES with the counterpart region of the BRBV IRES. The two chimeric viruses rescued were named rK(Stem) and rK(Loop), respectively. The replication dynamics of the two chimeric viruses in different cells were determined at different temperatures, and the one-step growth curves are shown in
(66) 2.5 Nucleotide C at 351-Site on the Loop of K Region of IRES Domain 4 Determines the Temperature-Sensitive Attenuated Phenotype of FMDV
(67) Alignment analysis revealed that the loop sequence (.sup.351CUUUAA.sup.356) in IRES subdomain K of FMDV is different to that of BRBV (UUUAC), including one more nucleotide at 351 position in the IRES of FMDV, and one nucleotide difference at 356 position (A for FMDV or C for BRBV) between the IRESes of two viruses. To test which nucleotide in the loop of subdomain K determined the temperature-sensitive attenuated phenotypes of FMDV, single point mutation was performed in the infectious cDNA clones of FMDV. Firstly, we generated a mutant rA356C with a single-nucleotide substitution at 356 position of IRES. The replication dynamics (
(68) In order to determine whether the nucleotide C351 of IRES determines the temperature-sensitive phenotype of FMDV, the present invention makes the following four mutations for the nucleotide C at the 351 position:
(69) (1) a deletion of nucleotide C351; (2) nucleotide C351 mutated to nucleotide A; (3) nucleotide C351 mutated to nucleotide G; (4) nucleotide C351 mutated to nucleotide U.
(70) The final test results showed that the mutation schemes (1) and (4) failed to rescue the virus due to the destruction of the loop structure of the IRES (
(71) 2.6 Genetic Stability of Temperature-Sensitive Attenuated Strains for Continuous Passage In Vitro
(72) In order to determine the genetic stability of FMDV temperature-sensitive attenuated strains, in the present invention, the IRES chimeric or site-directed mutagenesis viruses FMDV(R4), rdK, rK(Loop), rC351G, rC351A and the parental virus FMDV(WT) were continuously passaged for 20 times in BHK-21 cells, and the IRES sequences of 20.sup.th passage viruses were determined. For 20 passages in BHK-21 cells, the IRES sequences of FMDV(R4), rdK, rC351G and rC351A did not have any mutation; moreover, the mutant viruses still retained their original temperature-sensitive properties in cells (
(73) 2.7 IRES C351 is the Determining Site for Temperature-Sensitive Attenuated Phenotype Shared by FMDV Strains
(74) Although both rC351G and rC351A have high genetic stability, the attenuating effect of rC351G is more obvious than that of rC351A. Therefore, rC351G and C351G mutant IRES are selected as the research objects in the subsequent studies. The above research results were all produced using the type-O FMDV strains. In order to verify that the C351G mutation of IRES also determines the temperature-sensitive attenuated phenotype of other serotypes of FMDV strains, the present invention further uses the full-length cDNA infectious clone of the type-A and type-Asia1 FMDV to construct and rescue viral mutants with the nucleotide substitution of C351G in the IRES, which are named A-rC351G and Asia1-rC351G, respectively. The temperature sensitivities of the above IRES mutants have been determined, and the results are shown in
(75) 2.8 the Ability of the IRES C351G Mutant-Mediated Translation Initiation is Regulated by Temperature
(76) To explore the molecular mechanism causing the temperature-sensitive attenuated phenotypes of rC351G, we investigated a critical early step in viral replication, the initiation of IRES-directed translation of viral protein in a cap-independent manner. In order to achieve this, we constructed two luciferase replicons rC351G-luc and FMDV(WT)-luc, which contain the respective IRES elements in the same context as in their parent viruses, rC351G and FMDV(WT). The capacity of these luciferase replicons for IRES-mediated translation was assessed by transfecting BHK-21 and IBRS-2 cells with in vitro-transcribed replicon RNA at 33 C., 37 C. and 41 C., respectively. To differentiate the luciferase signal from translation of input viral RNA from the translation of newly replicated RNA, one portion of the transfected cells received 2 mM GnHCl, a potent inhibitor of FMDV RNA replication that has no toxic effects on cellular processes or viral translation. The results are shown in
(77) In order to further confirm the temperature-sensitive effect of the translational initiation mediated by the C351G-mutated IRES, the expression dynamics of VP2 structural protein of the IRES mutant rC351G and its parental virus FMDV(WT) were analyzed. The results are shown in
(78) 2.9 Virulence Test of Mutant rC351G to the Suckling Mice and Pigs
(79) The test results of the virulence to suckling mice showed that the virulence of rC351G was reduced by about 10,000 times compared with the virulence of FMDV(WT) (
(80) The test results of the virulence of rC351G strain returning to the pigs are shown in
(81) 2.10 Test Results of the Stability and Safety Evaluation of Attenuated Strain rC351G
(82) 1) In Vitro Cell Passage
(83) In order to test the genetic stability of the attenuated strain rC351G, continuous passage was performed in BHK-21 cells for 20 passages, and the whole genome sequence of the 20th passage virus was determined. The results showed that the rC351G strain had high genetic stability, and subjected to continuous passage for 20 passages in vitro, its IRES C351G did not undergo reversion mutation, and its attenuated phenotype did not change.
(84) 2) Co-Habiting Animals are not Infected
(85) The results of cohabitation test are shown in
(86) 3) The Virulence does not Return to Virulent after Continuous Passage in Natural Host Animals
(87) To further evaluate the safety of the attenuated strain rC351G, the strain was performed continuous passage in piglets. The results showed that the attenuated strain rC351G was subjected to continuous passage for 3 passages in the body of pigs, inoculating 3 pigs per passage. All the pigs were normal in body temperature during the 5-day observation period and had no clinical symptoms. Serum antibodies of the third-passage vaccinated pigs, collected on the 3rd, 7th, 14th, and 21st day after inoculation, were tested. The results showed that anti-FMDV structural protein antibody was negative (LPBE value was less than 1:8), and the anti-FMDV non-structural protein 3ABC antibody was also negative (OD value <0.2), and viral RNA in blood, oral and nasal swabs were also negative on the 3rd, 7th, 14th, and 21st day after inoculation. The above test results showed that the attenuated strain rC351G did not return to virulent after being subjected to continuous passage in pigs, on the basis of the previous evidence that the co-habitation did not spread the virus, this further proved that the artificial inoculation and passage of the attenuated strain rC351G had good safety in vivo.
(88) 2.11 Test Results of the Immune Protective Effect of Attenuated Strain rC351G Immunized Pigs
(89) The test results of the immune protective effect of rC351G immunized pigs are shown in Tab. 3.
(90) TABLE-US-00003 TABLE 3 Protection of the rC351G inoculated-pigs against challenged with FMDV O/Mya- 98/CHA/2010 strains Clinical Scoring Viral RNA Copy Viral RNA Copy Neutralizing Antibody Challenging Pig (Onset Virus Number in Blood Number in Nasal Titer Inoculum Dose (ID50) Number Date) Isolation (Onset Date) swabs (Onset Date) 0dpc 7dpc rC351G 10.sup.3 60 0 negative negative negative 128(180) 512(720) 66 0 negative negative negative 128(180) 512(720) 68 0 negative negative negative 64(90) 256(360) PBS 10.sup.3 65 18(2) positive 8.7log10(3) 8.5log10(3, 4) <8(<8) 128(180) 73 16(3) positive 6.2log10(3) 7.8log10(3, 4) <8(<8) 64(90)
(91) According to the test results, 2 days after the challenge, the body temperatures of two control pigs (65 #, 73 #) were increased to 41 C., the appetite decreased and the spirit was depressed, and 3 days after the challenge, the lesions appeared in the four hooves of the two pigs; 48 h after the challenge, the control pigs developed viremia, and the detections of FMDV RNA in blood, oral and nasal swabs were positive, the viremia reached a peak of 8.7 log.sub.10 viral RNA CN/ml 3 days after the challenge, at this time, the virus can be isolated from blood and from oral and nasal swabs. However, the 3 pigs (60 #, 66 #, 68 #) inoculated with the attenuated strain rC351G did not have any clinical symptoms or phenomenon of increasing body temperature within 7 days after the challenge, and the tests of the FMDV RNA, in the blood, oral and nasal swabs of the immunized pigs, were also negative, and the virus isolation was also negative; the results of FMDV antibody test after the challenge showed that the neutralizing antibody titer of FMDV 0 increased slightly from 1:128 to 1:512 and the titer of LPBE antibody increased from 1:180 to 1:720 at 7 dpc in the rC351G immunized group. In the PBS control group, the level of FMDV neutralizing antibody increased rapidly from less than 1:8 to 1:128, and the level of LPBE antibody also rapidly increased from 1:8 to 1:180. The results of the challenge test showed that the attenuated strain rC351G-immunized pigs could provide complete anti-infective protection against the challenge of currently popular type-O FMDV different genotype strains.
(92) 2.12 the Virulence of FMDV(R4) and rdK in Pigs
(93) Three pigs were inoculated with the attenuated mutants FMDV(R4) or rdK (10.sup.6 TCID.sub.50 per pig), and after 24 hours, two native pigs were placed in each group for co-habitation. The results are shown in