Systems and methods for nucleic acid expression in vivo
10905777 ยท 2021-02-02
Assignee
Inventors
- Robert James Debs (San Francisco, CA, US)
- Timothy D. Heath (Madison, WI, US)
- Chakkrapong HANDUMRONGKUL (Richmond, VA, US)
Cpc classification
A61K39/395
HUMAN NECESSITIES
A61K31/522
HUMAN NECESSITIES
A61K48/0016
HUMAN NECESSITIES
A61K48/0083
HUMAN NECESSITIES
A61K48/005
HUMAN NECESSITIES
C07K16/00
CHEMISTRY; METALLURGY
C07K2317/24
CHEMISTRY; METALLURGY
A61K9/1272
HUMAN NECESSITIES
A61K48/0066
HUMAN NECESSITIES
A61K31/00
HUMAN NECESSITIES
A61K31/573
HUMAN NECESSITIES
International classification
A61K48/00
HUMAN NECESSITIES
C07K16/00
CHEMISTRY; METALLURGY
A61K47/69
HUMAN NECESSITIES
A61K31/522
HUMAN NECESSITIES
A61K31/573
HUMAN NECESSITIES
C07K16/28
CHEMISTRY; METALLURGY
A61K9/127
HUMAN NECESSITIES
A01N61/00
HUMAN NECESSITIES
Abstract
The present invention provides compositions, systems, kits, and methods for generating expression of one or more proteins and/or biologically active nucleic acid molecules in a subject (e.g., at therapeutic levels for extended periods required to produce therapeutic effects). In certain embodiments, systems and kits are provided that comprise a first composition comprising a first amount of polycationic structures, and a second composition comprising a therapeutically effective amount of expression vectors (e.g., non-viral expression vectors not associated with liposomes) that are CpG-free or CpG-reduced, where the expression vectors comprise a first nucleic acid sequence encoding: i) a first therapeutic protein or proteins, and/or ii) a first biologically active nucleic acid molecule or molecules.
Claims
1. A method of expressing an antibody light chain and/or heavy chain in a subject comprising: a) administering intravenously a first composition to a subject, wherein said first composition comprises a first amount of polycationic structures, and wherein said first composition is free, or essentially free, of nucleic acid molecules; and b) administering intravenously a second composition to said subject within about 300 minutes of administering said first composition, wherein said second composition comprises non-viral expression vectors, wherein said non-viral expression vectors are CpG-free or CpG-reduced, wherein said non-viral expression vectors each comprise a first nucleic acid sequence encoding an antibody light chain and/or heavy chain, wherein the ratio of said first amount of said polycationic structures to said non-viral expression vectors is 5:1 to 25:1, and wherein, as a result of said administering said first composition and said administering said second composition, said antibody light chain and/or heavy chain is expressed in said subject at a level of at least 50 pg/ml in serum for at least 7 consecutive days; and c) administering intravenously a drug agent, in said first and/or second composition, or present in a third composition, wherein said drug agent increases or decreases said expression level of said antibody light chain and/or heavy chain and/or the length of time of said expression compared to when said drug agent is not administered to said subject.
2. The method of claim 1, wherein said polycationic structures comprise empty liposomes.
3. The method of claim 2, wherein said empty liposomes present in said first composition have a z-average diameter of about 20-85 nm.
4. The method of claim 1, wherein: A) said ratio is 10:1 to 18:1; and/or B) 2.0% to 6.0% of said first composition comprises dexamethasone or dexamethasone palmitate.
5. The method of claim 1, wherein each of said non-viral expression vectors each comprise only a single expression cassette, wherein said single expression cassette comprises said first nucleic acid sequence encoding said antibody light chain, and a second nucleic acid sequence encoding said antibody heavy chain.
6. The method of claim 1, wherein said drug agent is selected from colchicine, dexamethasone, dexamethasone palmitate, neutral lipids, valproic acid, theophylline, sildenafil, amlexanox, chloroquine, suberanilohydroxamic acid (SAHA), and L-arginine+sildenafil.
7. The method of claim 1, wherein said first amount of polycationic structures in said first composition comprises a mixture of cationic lipid and neutral lipid that reduces the expression of said antibody light and/or heavy chain compared to such expression when only said cationic lipid is employed in said method.
8. The method of claim 1, wherein said antibody light and/or heavy chain is expressed at said level in said subject for at least 21 consecutive days.
9. The method of claim 1, wherein said antibody light chain comprises a Rituximab light chain.
10. The method of claim 1, wherein said antibody heavy chain comprises a Rituximab heavy chain.
11. The method of claim 1, wherein said antibody light chain and/or heavy chain comprises said antibody light chain.
12. The method of claim 1, wherein said antibody light chain and/or heavy chain comprises said heavy chain.
13. The method of claim 1, wherein said antibody light chain and/or heavy chain comprises both said antibody light chain and heavy chain.
14. The method claim 13, wherein said first nucleic acid sequence further encodes a self-cleaving peptide between said antibody light chain and heavy chain.
15. The method of claim 1, wherein said non-viral expression vectors are CpG-free.
16. The method of claim 1, wherein said non-viral expression vectors are CpG-reduced.
17. The method of claim 1, wherein said second composition is administered to said subject between about 2 and 10 minutes after administering of said first composition.
18. The method of claim 1, wherein there are no detectable polycationic structures present in said second composition.
19. The method of claim 1, wherein said polycationic structures comprise liposomes, wherein said liposomes comprise 1,2-Dioleoyl-3-trimethylammonium propane (DOTAP).
20. The method of claim 1, wherein said subject is intravenously administered said third composition, wherein said third composition comprises dexamethasone and/or dexamethasone palmitate.
21. The method of claim 1, wherein said drug agent is in said first composition.
22. A method of expressing an antibody light chain and/or heavy chain in a subject comprising: a) administering intravenously a first composition to a subject, wherein said first composition comprises a first amount of polycationic structures, and wherein said first composition is free, or essentially free, of nucleic acid molecules; and b) administering intravenously a second composition to said subject within about 300 minutes of administering said first composition, wherein said second composition comprises non-viral expression vectors, wherein said non-viral expression vectors are CpG-free or CpG-reduced, wherein said non-viral expression vectors each comprise a first nucleic acid sequence encoding an antibody light chain and/or heavy chain, and c) administering intravenously dexamethasone, dexamethasone palmitate, and/or neutral lipids to said subject, either in said first and/or second composition, or present in a third composition, wherein, as a result of said administering said first composition, said administering said second composition, and said administering of said dexamethasone, dexamethasone palmitate, and/or neutral lipid, said antibody light chain and/or heavy chain is expressed in said subject at a level of at least 50 pg/ml in serum for at least 7 consecutive days.
23. The method of claim 22, wherein said antibody light and/or heavy chain is expressed at said level in said subject for at least 21 consecutive days.
24. The method of claim 22, wherein said second composition is administered to said subject between about 2 and 10 minutes after administering of said first composition.
25. The method of claim 22, wherein there are no detectable polycationic structures present in said second composition.
26. The method of claim 22, wherein said polycationic structures comprise liposomes, wherein said liposomes comprise 1,2-Dioleoyl-3-trimethylammonium propane (DOTAP).
27. The method of claim 22, wherein said subject is intravenously administered said third composition, wherein said third composition comprises dexamethasone and/or dexamethasone palmitate.
28. The method of claim 22, wherein said drug agent is in said first composition.
Description
DESCRIPTION OF THE FIGURES
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(39) The following abbreviations apply in this figure: M: Mar (M1: -Glo, and M3: IFN); Kozak2: Kozak Sequence2 (AAGCCACC, SEQ ID NO:4); Enhancer: mCMV; Promoter: EF1; 5UTR: I126; hFIX: human Factor XI cDNA; and pA: polyA
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DEFINITIONS
(46) As used herein, the phrase CpG-reduced refers to a nucleic acid sequence or expression vector that has less CpG di-nucleotides than present in the wild-type versions of the sequence or vector. CpG-free means the subject nucleic acid sequence or vector does not have any CpG di-nucleotides. An initial sequence, that contains CpG dinucleotides (e.g., wild-type version of human G-CSF), may be modified to remove CpG dinucleotides by altering the nucleic acid sequence. Such CpG di-nucleotides can be suitably reduced or eliminated not just in a coding sequence, but also in the non-coding sequences, including, e.g., 5 and 3 untranslated regions (UTRs), promoter, enhancer, polyA, ITRs, introns, and any other sequences present in the nucleic acid molecule or vector.
(47) As used herein, empty liposomes refers to liposomes that do not contain nucleic acid molecules but that may contain other bioactive molecules (e.g., liposomes that are only composed of the lipid molecules themselves, or only lipid molecules and a small molecule drug).
(48) As used herein, empty cationic micelles refers to cationic micelles that do not contain nucleic acid molecules but that may contain other bioactive molecules (e.g., micelles that are only composed of lipid and surfactant molecules themselves, or only lipid and surfactant molecules and a small molecule drug).
(49) As used herein, empty cationic emulsions refers to cationic emulsions or micro-emulsions that do not contain nucleic acid molecules but that may contain other bioactive molecules.
DETAILED DESCRIPTION
(50) The present invention provides compositions, systems, kits, and methods for generating expression of a protein or biologically active nucleic acid molecule in a subject (e.g., at therapeutic levels for extended periods of time). In certain embodiments, systems and kits are provided that comprise a first composition comprising a first amount polycationic structures (e.g., empty cationic liposomes, empty cationic micelles, or empty cationic emulsions), and a second composition comprising a therapeutically effective amount of expression vectors (e.g., non-viral expression vectors not associated with liposomes) that are CpG-free or CpG-reduced, where the expression vectors comprise a first nucleic acid sequence encoding: i) a first therapeutic protein, and/or ii) a first biologically active nucleic acid molecule. In other embodiments, such first and second compositions are sequentially administered (e.g., systemically) to a subject such that the first therapeutic protein and/or the biologically active nucleic acid molecule is/are expressed in the subject (e.g., at a therapeutic level, for at least 5 or at least 50 days, such that a disease or condition is treated or a physiological trait is altered).
(51) Work conducted during the development of embodiments of the present disclosure has shown that a single injection (e.g., intravenous injection) of cationic liposomes, followed shortly thereafter by injection (e.g., intravenous injection) of CpG-free vectors encoding a therapeutic protein produces circulating protein levels many times (e.g., 10-20 times higher) than the therapeutic serum level for the protein for a prolonged period. Such administration also increased circulating neutrophil counts many fold weeks after the treatment.
(52) Work conducted during the development of embodiments of the present disclosure (e.g., as shown in Example 1 below) has shown that a single intravenous injection of cationic liposomes, followed two minutes later by intravenous injection of CpG-free plasmid vectors encoding human granulocyte-colony stimulating factor (hG-CSF) produces circulating hG-CSF protein levels 10-20 times higher than the therapeutic serum hG-CSF level (greater than or equal to 100 pg/ml) for at least 63 days (see,
(53) Thus, the approach provided herein for expression in vivo overcomes the critical limitation that has up to now precluded the successful therapeutic application of systemic non-viral gene delivery. Namely, its inability to express delivered genes at therapeutic levels for the extended periods generally required to produce important therapeutic or physiological endpoints. As shown in Example 1, embodiments of the methods provided herein accomplish such long lasting expression of a therapeutic protein with non-viral vectors without having to incorporate viral genes into the vectors. This is important as other approaches relied on the insertion of at least one viral gene plus the viral DNA sequence to which its protein product binds (the EBNA-1 gene together with the EBV family of repeat sequences inserted into the DNA vector) has been required in order to overcome this transient gene expression limitation (see, Tu et al., above). Moreover, in addition to the high hG-CSF protein levels found after 63 days in Example 1 (
(54) In addition, the systems, methods, and compositions provided herein provide a versatile (e.g., non-viral) gene delivery and expression platform that can much more precisely control the duration of expression of delivered genes at therapeutic levels. This ability to control the duration of expression of delivered genes addresses another up to now critical unmet need within the gene therapy field, the ability to control the duration at which proteins are expressed at therapeutic levels. Specifically, there is now a wide and expanding spectrum of FDA-approved, recombinant, secreted human protein therapies. Different approved protein therapies must be present at therapeutic levels for very different durations in order to both effectively and safely treat patients. Recommended treatment durations of different protein therapies vary from less than two weeks (hG-CSF) to the lifetime of the patient (factor IX). For example, recombinant human G-CSF protein, Neupogen, is given daily for only the first 10 days of each three-week chemotherapy cycle. Serum hG-CSF levels return to baseline approximately 14 hours after each daily Neupogen dose. This 10 day treatment schedule is used because its neutrophil increasing effect is indicated only during this approximately 10 day period of chemotherapy-induced neutropenia. G-CSF elevation from days 11 to 21 is generally not beneficial, as the patient's own neutrophil producing capacity returns. Giving Neupogen beyond day 10 can cause toxic, neutrophilia-related side effects. In contrast, anti-TNF antibodies are routinely administered for months or years, and factor IX replacement for the lifetime of the patient. Thus, different proteins must be produced at therapeutic levels for different durations, from less than two weeks to the lifetime of the patient. Therefore, a gene therapy approach that can control the duration of gene expression at therapeutic levels it produces in patients achieves therapeutic endpoints while avoiding toxic side effects for a wide spectrum of now FDA-approved, human therapeutic proteins. Provided herein are various technologies that can be employed to provide this control. Five exemplary approaches are described below.
(55) First, in certain embodiments, a second expression cassette is inserted into a single plasmid DNA vector or other vector. As shown in Example 1, in contrast to the single expression cassette hG-CSF plasmid vector that was used, which produces therapeutic hG-CSF levels for at least 63 days (
(56) Second, as shown in Example 1, a series of different, CPG-free promoter-enhancer combinations were generated in single cassette plasmid vectors that express hG-CSF at therapeutic levels for a range of different durations following a single IV injection in mice (
(57) Third, as described in Example 1, it was shown that co-injecting now FDA-approved drugs, singly or in selected combinations with the cationic liposomes can selectively either increase or decrease the level/duration of expression of the gene subsequently delivered by sequential IV injection in mice (
(58) Fourth, as demonstrated in Example 1, varying the cationic liposome size, as well as the lipid composition can also control the level and duration of expression of genes delivered by sequential cationic liposome then DNA injection (
(59) Fifth, as demonstrated in example 14, the addition of neutral lipids together with dexamethasone and dexamethasone palmitate can increase the duration of gene expression (
(60) In addition, some literature also describes that matrix attachment regions (MAR) should be incorporated into DNA vectors in order to produce prolonged expression following their IV injection (Argyros et al., J Mol Med (2011) 89:515-529, herein incorporated by reference in its entirety). In contrast, work conducted during development of embodiments of the present disclosure indicate that the presence of such MAR elements do not increase, and in some vectors decrease the duration of gene expression produced by IV, sequential injection of cationic liposomes followed by CPG-free plasmid DNA (
(61) In certain embodiments, the present disclosure employs polycationic structures (e.g., empty cationic liposomes, empty cationic micelles, or empty cationic emulsions) not containing vector DNA, which are administered to a subject prior to vector administration. In certain embodiments, the polycationic structures are cationic lipids and/or are provided as an emulsion. The present disclosure is not limited to the cationic lipids employed, which can be composed, in some embodiments, of one or more of the following: DDAB, dimethyldioctadecyl ammonium bromide; DPTAP (1,2-dipalmitoyl 3-trimethylammonium propane); DHA; prostaglandin, N-[1-(2,3-Dioloyloxy)propyl]-N,N,N-trimethylammonium methyl sulfate; 1,2-diacyl-3-trimethylammonium-propanes, (including but not limited to, dioleoyl (DOTAP), dimyristoyl, dipalmitoyl, disearoyl); 1,2-diacyl-3-dimethylammonium-propanes, (including but not limited to, dioleoyl, dimyristoyl, dipalmitoyl, disearoyl) DOTMA, N-[1-[2,3-bis(oleoyloxy)]propyl]-N,N,N-trimethylammoniu-m chloride; DOGS, dioctadecylamidoglycylspermine; DC-cholesterol, 3.beta.-[N-(N,N-dimethylaminoethane)carbamoyl]cholesterol; DOSPA, 2,3-dioleoyloxy-N-(2(sperminecarboxamido)-ethyl)-N,N-dimethyl-1-propanami-nium trifluoroacetate; 1,2-diacyl-sn-glycero-3-ethylphosphocholines (including but not limited to dioleoyl (DOEPC), dilauroyl, dimyristoyl, dipalmitoyl, distearoyl, palmitoyl-oleoyl); beta-alanyl cholesterol; CTAB, cetyl trimethyl ammonium bromide; diC14-amidine, N-t-butyl-N-tetradecyl-3-tetradecylaminopropionamidine; 14Dea2, O,O-ditetradecanolyl-N-(trimethylammonioacetyl) diethanolamine chloride; DOSPER, 1,3-dioleoyloxy-2-(6-carboxy-spermyl)-propylamide; N,N,N,N-tetramethyl-N,N-bis(2-hydroxylethyl)-2,3-dioleoyloxy-1,4-butan-ediammonium iodide; 1[2-acyloxy)ethyl]2-alkyl (alkenyl)-3-(2-hydroxyethyl-) imidazolinium chloride derivatives such as 1-[2-(9(Z)-octadecenoyloxy)eth-yl]-2-(8(Z)-heptadecenyl-3-(2-hydroxyethyl)imidazolinium chloride (DOTIM), 1-[2-(hexadecanoyloxy)ethyl]-2-pentadecyl-3-(2-hydroxyethyl)imidazolinium chloride (DPTIM); 1-[2-tetradecanoyloxy)ethyl]-2-tridecyl-3-(2-hydroxyeth-yl)imidazolium chloride (DMTIM) (e.g., as described in Solodin et al. (1995) Biochem. 43:13537-13544, herein incorporated by reference); 2,3-dialkyloxypropyl quaternary ammonium compound derivates, containing a hydroxyalkyl moiety on the quaternary amine, such as 1,2-dioleoyl-3-dimethyl-hydroxyethyl ammonium bromide (DORI); 1,2-dioleyloxypropyl-3-dimethyl-hydroxyethyl ammonium bromide (DORIE); 1,2-dioleyloxypropyl-3-dimethyl-hydroxypropyl ammonium bromide (DORIE-HP), 1,2-dioleyloxypropyl-3-dimethyl-hydroxybutyl ammonium bromide (DORIE-HB); 1,2-dioleyloxypropyl-3-dimethyl-hydroxypentyl ammonium bromide (DORIE-HPe); 1,2-dimyristyloxypropyl-3-dimethyl-hydroxylethyl ammonium bromide (DMRIE); 1,2-dipalmityloxypropyl-3-dimethyl-hydroxyethyl ammonium bromide (DPRIE); 1,2-disteryloxypropyl-3-dimethyl-hydroxyethyl ammonium bromide (DSRIE) (e.g., as described in Felgner et al. (1994) J. Biol. Chem. 269:2550-2561, herein incorporated by reference in its entirety). Many of the above-mentioned lipids are available commercially from, e.g., Avanti Polar Lipids, Inc.; Sigma Chemical Co.; Molecular Probes, Inc.; Northern Lipids, Inc.; Roche Molecular Biochemicals; and Promega Corp.
(62) In certain embodiments, the present disclosure employs CpG-reduced or CpG-free expression vectors. An initial sequence that contains CpG dinucleotides (e.g., wild-type version of human G-CSF), may be modified to remove CpG dinucleotides by altering the nucleic acid sequence.
(63) TABLE-US-00001 TABLE1 DNACodons DNACodons AminoAcid ContainingCpG LackingCpG Serine TCG TCT,TCC,TCA, (SerorS) AGT,AGC Proline CCG CCT,CCC,CCA, (ProorP) Threonine ACG ACA,ACT,ACC (ThrorT) Alanine GCG GCT,GCC,GCA (AlaorA) Arginine CGT,CGC, AGA,AGG (ArgorR) CGA,CGG
In addition, within the coding region, the interface between triplets should be taken into consideration. For example, if an amino acid triplet ends in a C-nucleotide which is then followed by an amino acid triplet which can start only with a G-nucleotide (e.g., Valine, Glycine, Glutamic Acid, Alanine, Aspartic Acid), then the triplet for the first amino acid triplet is changed to one which does not end in a C-nucleotide. Methods for making CpG sequences are shown, for example, in U.S. Pat. No. 7,244,609, which is herein incorporated by reference. A commercial service provided by INVIVOGEN is also available to produce CpG free (or reduced) nucleic acid sequences and vectors.
(64) Provided below in Table 2 are exemplary promoters and enhancers that may be used in the vectors described herein. Such promoters, and other promoters known in the art, may be used alone or with any of the enhancers, or enhancers, known in the art. Additionally, when multiple proteins or biologically active nucleic acid molecules (e.g., two, three, four, or more) are expressed from the same vector, the same or different promoters may be used in conjunction with the subject nucleic acid sequence.
(65) TABLE-US-00002 TABLE 2 Promoter Enhancer CMV human CMV EF1 mouse CMV Ferritin (Heavy/Light) Chain SV40 GRP94 Ubc U1 AP1 UbC hr3 Beta Actin IE2 PGK1 IE6 GRP78 E2-RS CAG MEF2 SV40 C/EBP TRE HNF-1
(66) The present disclosure is not limited by the type of therapeutic proteins that is expressed. In certain embodiments, the therapeutic protein comprises an antibody or antibody fragments (e.g., F(ab) or F(ab)2). In other embodiments, the therapeutic protein is selected from the group consisting of an anti-inflammatory protein, coagulation protein, anti-cancer protein, anti-sepsis protein, etc.
EXAMPLES
Example 1
In Vivo Protein Expression Using Sequential Injection of Cationic Liposomes Followed by CPG-Free Expression Vectors
(67) This example describes various work using in vivo protein expression using sequential injection of cationic liposomes followed closely in time by CPG-free expression vectors.
Methods
Liposome Preparation
(68) Pure DOTAP lipid as a lyophilized powder was purchased from Avanti polar lipids. Pure DOTAP cationic liposomes were prepared by re-suspending the lyophilized powder in a solution of 5% dextrose in water at a lipid concentration of 20 millimolar. The solution was then vortexed for 15 minutes to form multi-lamellar vesicles (MLV), mean particle size 350 nm, as measured by laser light scattering. Small uni-lamellar vesicles (SUV), mean particle size 75 nm, were then formed from MLV by sonication in a bath sonicator.
Plasmid Construction
(69) General schematics for the vectors employed are provided in
(70) The expression cassette was constructed using the puc19 plasmid backbone by sequentially inserting each DNA element between EcoRI and XbaI. Enhancer/Promoter elements containing 5 EcoRI and NheI sites were ligated to the 5UTR, gene, pA or pA-MAR, as well as puc19 at EcoRI, EcoRV, BstEII, BglII and XbaI sites, respectively. The expression cassette was then digested with EcoRI-XbaI and inserted into the base vector at EcoRI-NheI, producing an expression plasmid containing restriction sites that can be used to insert a second expression cassette insertion. Dual (Luc- and GCSF) cassette expression plasmids were then constructed by inserting the hG-CSF expression cassette into the base vector at EcoRI-NheI. The second, Luc expression cassette was subsequently inserted into the G-CSF expression plasmid at EcoRI-NheI, producing a dual cassette, Luc and GCSF containing, single plasmid vector.
Plasmid Purification
(71) Endotoxin-free plasmids were purified on 5Prime Endo-free Maxi columns as follows. Briefly, 200 ml of bacteria containing the plasmid are grown overnight at 37C and then collected. Bacterial cells are lysed per the manufacturer's protocol. Endotoxin is removed using an EndoFree filter CS. Isopropanol is added to the lysate and then loaded onto a column. After successive washes, the column is centrifuged and air-dried for 10 min to ensure residual ethanol is removed. DNA is then eluted from the column with 1 ml of Lactated Ringers.
Mice
(72) 21 g female, CD-1 mice were purchased from Charles River. Housing, care and all procedures were performed according to IACUC approved guidelines.
Sequential Injection of Cationic Liposomes, then Plasmid DNA in Mice
(73) Three to five mice were injected per group. Each mouse received a single IV injection of cationic liposomes (MLV or SUV), followed two minutes later by a single IV injection of a CPG-free, plasmid DNA vector.
Obtaining and Then Analyzing Mouse Serum for Human G-CSF Levels
(74) Each mouse was anesthetized and then bled via the submandibular vein. Serum was then isolated from whole blood and human G-CSF levels measured in pg/ml, as performed strictly according to the manufacturer's specifications, using an R and D systems human G-CSF ELISA.
Obtaining and Then Analyzing Mouse Tissue for Luciferase Activity
(75) Lung was homogenized with 500 ul of 1 Lysis buffer (Promega, Wis.). The homogenate was centrifuged at 3000g at 4C for 10 min. and the supernatant collected. Luciferase activity was assayed using 20 l of supernatant and 100 l of Luciferase reagent for 10 seconds using a GloMax Luminometer (Promega, Wis.).
Results/Description
Serum Human G-CSF Levels Produced in Mice by Sequential, IV Cationic Liposome Injection Followed by IV DNA Vector Injection
(76) Five mice were injected per group. Each mouse received a single IV injection of 800 nmoles of pure DOTAP cationic liposomes (MLV or SUV), followed two minutes later by a single IV injection of 80 g of an mCMV-EF1-hGCSF, an hCMV-hCMV-hGCSF or an mCMV-EF1-luciferase, CPG-free, plasmid DNA vector. Serum hG-CSF levels were assessed beginning at day seven after IV injection, and at seven-day intervals thereafter.
(77) As shown in
WBC and Absolute Neutrophil Counts, 21 Days After Sequential, IV Cationic Liposome Then DNA Vector Injection
(78) Whole blood was collected from groups of 4 mice at day 21 following sequential, IV injection of DOTAP MLV, followed two minutes later by a single IV injection of either an EF1-hGCSF or an EF-1 luciferase-containing, CPG-free plasmid DNA vector. Blood from each mouse was then analyzed, in a blinded fashion, for total WBC, as well as absolute neutrophil counts by the University of California Davis veterinary diagnostics laboratory.
(79) As shown in
Serum Human G-CSF Levels Produced in Mice by Sequential IV Injection of Either Single or Dual Cassette, hG-CSF Single Plasmid Vectors
(80) Sera were collected from groups of four mice at either day 6 or 14 following sequential, IV injection of 800 nmoles of pure DOTAP MLV cationic liposomes, followed two minutes later by IV injection of 40 g either an EF1-luciferaseEF1-hGCSF (2 expression cassette) or an EF1-hGCSF (1 expression cassette), CPG-free, single plasmid DNA vector.
(81) As shown in
Serum hG-CSF Levels in Mice, 21 Days After IV Injection of Cationic Liposomes, then DNA Containing Different Promoter-enhancer Combinations Linked to the hG-CSF Gene
(82) Sera were collected from groups of four mice, 21 days following sequential, IV injection of 800 nmoles of pure DOTAP MLV cationic liposomes, followed two minutes later by IV injection of 60 g of the hG-CSF gene, linked to one of the following enhancer-promoter combinations, mCMV-EF1, hCMV-hCMV, hCMV-hferritin light chain, hCMV-hferritin heavy chain, hCMV-glucose-regulated protein 78 or mCMV-hferritin light chain, each in a CPG-free, single cassette, DNA vector.
(83) As shown in
Mouse Lung Luciferase Levels, 7 Days After Sequential IV Injection of Cationic Liposomes, then Single Cassette, EF1-luciferase DNA Alone or Together with a Drug
(84) Lungs were collected from groups of four mice, 7 days following sequential, IV injection of 800 nmoles of pure DOTAP MLV cationic liposomes alone, or containing 2 mg/kg of L-arginine, 0.01 mg/kg of colchicine or 1 mg/kg of dexamethasone. In each case, cationic liposome injection was followed two minutes later by IV injection of 40 g of an mCMV-EF1-luciferase, CPG-free, single cassette, DNA vector.
(85) As shown in
Mouse Lung Luciferase Levels, 7 Days After Sequential IV Injection of Cationic Liposomes, Then Dual Cassette, EF1-hG-CSF-EF1-luciferase DNA Alone or With Drug(s)
(86) Lungs were collected from groups of four mice, 7 days following sequential, IV injection of 800 nmoles of pure DOTAP MLV cationic liposomes alone, or containing 2 mg/kg of L-arginine, 1 mg/kg of dexamethasone, 0.02 mg/kg of sildenafil, 0.1 mg/kg of valproic acid or 2 mg/kg of L-arginine plus 0.02 mg/kg of sildenafil (VIAGRA). In each case, cationic liposome injection was followed two minutes later by IV injection of 40 g of EF1-luciferaseEF1-hGCSF, a 2 expression cassette, CPG-free single plasmid DNA vector.
(87) As shown in
Mouse Lung Luciferase Levels, 10 Days After Sequential IV Injection of Cationic Liposomes, Then a DNA Vector Containing One of a Series of Different Promoter-Enhancer Combinations, Each Either With or Without MARs and all Linked to the Luciferase Gene
(88) Lungs were collected from groups of three mice, 10 days following sequential, IV injection of 800 nmoles of pure DOTAP MLV cationic liposomes, followed two minutes later by IV injection of 40 g of the luciferase gene, linked to one of the following enhancer-promoter combinations: hCMV-hCMV, hCMV-human ferritin heavy chain, hCMV-CBOX (human Carboxypeptidase B1), mCMV-hCMV, mCMV-CBOX and mCMV-EF1, each linked to the luciferase gene in a CPG-free, single cassette, DNA vector.
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Mouse Lung Luciferase Levels, 1 or 5 Days After IV Injection of PEI:EF-1 Luc DNA Complexes or Sequential IV Injection of Cationic Liposomes, then the Identical EF-1 Luc DNA
(90) Lungs were collected from groups of three mice, 1 or 5 days following IV injection of either 12.5 g of CPG-free EF-1-Luc DNA vector complexed to 22 kDa linear PEI at a 1:4 N:P ratio, or sequential, IV injection of 900 nmoles of pure DOTAP MLV cationic liposomes, followed two minutes later by IV injection of 40 g of the same EF-1-Luc DNA vector.
(91)
Mouse Lung Luciferase Levels, 1 Day After Sequential IV Injection of One of Seven Different Cationic Liposome Formulations, Then Single Cassette, EF1-Luciferase DNA
(92) Lungs were collected from groups of four mice, 1 day following sequential, IV injection of 800 nmoles of pure DOTAP MLV, pure DOTAP SUV, DOTAP:cholesterol 2:1 MLV, DOTAP:diolelyl phosphatidylcholine (DOPC) 1:1 MLV, DSTAP MLV, ethyl DSPC MLV or DOTAP:DOBAQ 1:1 MLV cationic liposomes. In each case, cationic liposome injection was followed two minutes later by IV injection of 80 g of an mCMV-EF1-luciferase, CPG-free, single cassette, DNA vector.
(93) As shown in
(94) Mouse Spleen Luciferase Levels, 1 Day After IV Injection Of PEI:EF-1 Luc DNA Complexes Alone or Mixed With One of Four Different Drugs
(95) Spleens were collected from groups of three mice, 1 day following IV injection of 12.5 g of CPG-free EF-1-Luc DNA vector complexed to 22 kDa linear PEI at a 1:4 N:P ratio. Mice received an intraperitoneal injection of one ml of 5% DMSO either alone, or containing 200 g of amlexanox, 1 mg of chloroquine, 200 g of SAHA or 300 g of tofacitinib per mouse, two hours prior to receiving IV PEI:DNA complexes.
(96)
(97) Mouse Lung Luciferase Levels, 1 or 7 Days After Sequential IV Injection of Cationic Liposomes, Then One of a Series of Dual Cassette, EF-1-LuchG-CSF DNA Vectors
(98) Lungs were collected from groups of four mice, 1 or 7 days following sequential, IV injection of 800 nmoles of pure DOTAP MLV cationic liposomes followed two minutes later by 40 g of EF1-LucEF1-hGCSF, EF1-LuchCMV-hCMV-hGCSF, EF1-LuchCMV-hCBOX-hGCSF, EF1-LuchCMV-hREG1-hGCSF or EF1-LucmCMV-hCBOX-hGCSF 2 expression cassette, CPG-free single plasmid DNA vector.
(99)
Serum Human G-CSF Levels Produced in Mice, 1 Day After Sequential, IV Cationic Liposome Injection, With or Without Co-Injection of Neutral Liposomes, Followed by IV Injection of a Dual Cassette, Single Plasmid Vector
(100) Neutral MLV liposomes were prepared from Phospholipon 90H, Lipoid GmbH. The fatty acid content of this product is 15% palmitic acid, 85% stearic acid. Liposomes were prepared either by drying down the lipids in organic solvent on a rotary evaporator, then re-suspending the dried lipid film in a solution of 5% dextrose in water at a lipid concentration of 50 millimolar or by hydrating the lipid as a dry powder in 5% w/v dextrose. Both were prepared at 60 degrees C. The solution was then vortexed for 15 minutes to form MLV. Sera were collected from groups of four mice at day 1 following sequential, IV injection of buffer alone (control), 1000 nmoles of pure DOTAP SUV cationic liposomes, alone or co-injected with 1000 nmol of neutral MLV, followed two minutes later by IV injection of 120 g an EF1-luciferaseEF1-hGCSF (2 expression cassette), CPG-free, single plasmid DNA vector or 1400 nmoles of pure DOTAP SUV cationic liposomes, alone or co-injected with 1000 nmol of neutral MLV, followed two minutes later by IV injection of 100 g of EF1-luciferaseEF1-hGCSF DNA.
(101) As shown in
Serum Human G-CSF Levels Produced in Mice, 1 or 7 Days After Sequential, IV Cationic Liposome Co-Injection with Neutral Liposomes, Followed by IV Injection of a Dual Cassette Plasmid Vector
(102) Sera were collected from groups of four mice at day 7 following sequential, IV injection of 1000 nmoles pure DOTAP SUV cationic liposomes co-injected with 1000 nmol of neutral MLV, followed two minutes later by IV injection of 120 g of CPG-free, EF1-luciferaseEF1-hGCSF DNA or 1000 nmoles of pure DOTAP SUV cationic liposomes co-injected with 1400 nmol of neutral MLV, followed two minutes later by IV injection of 100 g of EF1-luciferaseEF1-hGCSF DNA. Sera were also collected from groups of four mice at day 1 following sequential, IV injection of buffer only (control), 800 nmoles of pure DOTAP SUV cationic liposomes co-injected with 1000, 750, 500, 250 or 100 nmol of neutral MLV respectively, followed two minutes later by IV injection of 90 g of EF1-luciferaseEF1-hGCSF.
(103) As shown in
Mouse Serum Hg-CSF Levels, 7 Day After Sequential IV Injection of Different Cationic Liposome Formulations, then Single Cassette, CPG-Free EF1-Hg-CSF DNA
(104) Sera were collected from groups of four mice, 7 days following sequential, IV injection of either 800 or 1000 nmoles of pure DOTAP SUV, or MLV cationic liposomes. Injection of each of the three cationic liposome formulations was followed two minutes later by IV injection of either 100 or 120 g of an mCMV-EF1-h-G-CSF, CPG-free, single cassette, DNA vector. 0.1 m extruded cationic liposomes were prepared from MLV by sequential extrusion through sized polycarbonate membranes under high argon gas pressure in a Lipex extrusion device.
(105) As shown in
Example 2
Long-Term Expression
(106) In this Example, five mice per group were sequentially injected with 800 nmol of either DOTAP MLV or SUV followed by 90 ug of a CPG-free plasmid vector containing an EF1- or hCMV-driven hG-CSF cDNA. Serum levels of human G-CSF protein were assessed at 7- or 14-day intervals for the subsequent 428 days following injection. Obtaining and analyzing mouse serum for human G-CSF levels was performed as follows. Each mouse was anesthetized and bled via submandibular vein. Serum was isolated from whole blood using serum separator tubes from BD. Human G-CSF levels were measured in pg/ml via an ELISA performed strictly according to the manufacturer's specifications, using an R&D systems human G-CSF ELISA. The results are shown in
Example 3
Protein Expression in Rats
(107) In this Example, 250 gm Sprague-Dawley female rats #22 and 23 were sequentially injected with 6000 nmol of DOTAP SUV then 300 ug of a CPG-free plasmid vector containing an EF1-driven hG-CSF DNA vector. Serum levels of human G-CSF protein, WBC and absolute neutrophil counts (ANC) were assessed at 7-day intervals following injection. Serum ALT and AST levels were assessed at day 1 only. All were assessed by the UC Davis Comparative Pathology lab. As shown in
(108) TABLE-US-00003 TABLE 3 WBC Day 1 Day 8 Day 15 Day 22 ALT Day 1 #22 6.56 27.36 23.68 27.20 Ctrl 4.57 #22 30.30 Ctrl 12-67 #23 11.04 15.74 12.90 20.08 SEM 0.27 #23 29.40 ANC Day 1 Day 8 Day 15 Day 22 AST Day 1 #22 4.99 17.31 12.32 15.69 Ctrl 1.39 #22 89.80 Ctrl 14-113 #23 5.07 8.07 6.68 10.57 SEM 0.13 #23 74.00
Example 4
DPTAP Liposomes
(109) In this Example, three mice were injected per group. Each mouse received a single IV injection of 900 nmoles of DOTAP, DMTAP, or DPTAP (1,2-dipalmitoyl 3-trimethylammonium propane) SUV liposomes followed two minutes later by a single IV injection of 70 ug of an EF-1 plasmid DNA vector encoding hG-CSF. Serum levels of hG-CSF were determined by ELISA 24 hours following injection.
Example 5
Toxicity Resolves Within 48 Hours
(110) In this Example, three mice were injected per group. Mice were purchased from Charles River Labs. Each mouse received a single IV injection of 1000 nmoles, 1200 nmoles, or 1400 nmoles of DOTAP SUV liposomes as indicated, followed two minutes later by a single IV injection of 100 g, 120 g, or 140 g of a CPG-free EF-1 driven plasmid DNA vector encoding luciferase. Serum was collected at 24 hrs or 48 hrs after injection. ALT and AST measurements were assayed at the UC Davis Comparative Pathology lab. As shown in
Example 6
Liposomes with DexP
(111) In this Example, three mice were injected per group. Each mouse received a single IV injection of 900 nmoles of either pure DOTAP SUV liposomes or each mouse received a single IV injection of 900 nmoles of either pure DOTAP SUV liposomes or liposomes containing indicated mole % s of dexamethasone covalently linked to palmitate (DexP) incorporated into the liposome bilayer. Incorporation of 5% cholesteryl palmitate (CholP) into the liposome bilayer served as a control. This was followed two minutes later by a single IV injection of 90 ug of plasmid DNA encoding hG-CSF. Serum levels of hG-CSF were determined by ELISA 24 hours following injection and ALT measurements were assayed at the UC Davis Comparative Pathology lab. As shown in
Example 7
DexP Reduces Toxicity and Increases Expression
(112) In this Example, three mice were injected per group. Each mouse received a single IV injection of 900 nmoles of either pure DOTAP SUV liposomes or liposomes containing 2.5 mole % of dexamethasone covalently linked to palmitate (DexP) incorporated into the liposome bilayer of DOTAP liposomes. This was followed two minutes later by a single IV injection of either 130 ug (high) or 40 ug (low) of an EF-1 driven plasmid DNA vector encoding hG-CSF. Two groups were treated two hours prior to IV injection with an IP injection of 1 umole of dexamethasone palmitate. Serum levels of hG-CSF were determined by ELISA 24 hours following injection and ALT measurements were assayed at 24 hours by the UC Davis
(113) Comparative Pathology lab. As shown in
Example 8
Pre and Post Dex Injection
(114) In this Example, mice were pre-injected IP with 15 mg/kg of Tofacitinib or 40 mg/kg of Dexamethasone, followed 2 hours later by sequential IV injections of 900 nmol DOTAP SUV, then 70 ug of a CPG-free, EF-1 driven hG-CSF plasmid vector. Another IP injection of Tofacitinib or Dexamethasone was administered 2 hours after injection of DNA. As shown in
Example 9
Lipid to DNA Ratio
(115) In this Example, three mice per group were given IV injections of 900, 1000, 1200, or 1500 nmols of DOTAP SUV liposomes containing 2.5 mole % of dexamethasone covalently linked to palmitate (DexP) incorporated into the liposome bilayer of DOTAP liposomes, suspended in Lactated Ringer's (LR) to a final volume of 100 uL per injection, followed 2 minutes later by 40, 60, or 75 ug of a CPG-free, EF-1 driven, hG-CSF plasmid vector at 100 L per injection. Mock-injected mice received LR only without lipid or DNA. Serum levels of hG-CSF protein and ALT were assayed 24 hours later. As shown in
Example 10
Rituximab Expression
(116) In this Example, three mice were injected per group. Each mouse received a single IV injection of 1000 nmoles of either pure DOTAP cationic liposomes or liposomes containing 2.5 mole % of dexamethasone covalently linked to palmitate (DexP) incorporated into the liposome bilayer of DOTAP liposomes. This was followed two minutes later by a single IV injection of 100 ug of a dual cassette, single plasmid DNA vector encoding the Rituximab heavy and light chains (see constructs in
Example 11
Rituximab Expression
(117) In this Example, three mice were injected per group. Each mouse received a single IV injection of 1000 nmoles of either pure DOTAP cationic liposomes or liposomes containing 2.5 mole % of dexamethasone covalently linked to palmitate (DexP) incorporated into the liposome bilayer of DOTAP liposomes. This was followed two minutes later by a single IV injection of 100 ug of an EF-1-driven, dual cassette, single plasmid DNA vector encoding Rituximab (see constructs in
Example 12
Dual Cassette, Single Plasmid Rituximab Expression
(118) In this Example, Raji cells (1 million/sample) were incubated with mouse serum samples or recombinant Rituximab (50 ng/ml) for 1 hr at 4C, in FACS binding buffer containing EDTA and 0.5% BSA. Following washes, samples were incubated with fluorescently labeled secondary antibody (anti-human IgG-PE) for 30 min, washed and analyzed using an Accuri flow cytometer. Between 3500-5000 events were recorded for each sample. The experiment was repeated twice with similar results.
(119)
(120) TABLE-US-00004 TABLE 4 Sample designation Mean Fluorescence Intensity Secondary antibody alone 331.86 Mouse Serum (injected with control 279.32 plasmid) Recombinant Rituximab (50 ug/ml) 5781.87 Mouse Serum (injected with anti-CD20 3532.40 plasmid)
Example 13
Functional Rituximab is Expressed
(121) In this Example, Raji cells (510.sup.4 cells/well) were plated in 96 well plates using RPMI+10% FBS medium. Next day cells were incubated with Rituximab (1, 10 ug/ml) or mouse serum samples (20 l/well) for 1 hour at room temperature. Twenty ul of pooled normal human plasma (Innovative Research) was then added to all wells (except the Rituximab control condition) and the plates incubated for another 12 h at 37C. Cell viability was measured using the Promega Cell titer glo reagent according to the manufacturer's instructions. In
(122) Results of this Example are shown in
Example 14
Enhanced Expression of Rituximab
(123) In this Example, two, 250 gm Sprague-Dawley female rats per group were were first pre-injected with 40 mg/kg dexamethasone, then sequentially injected with 4400 nmol of DOTAP SUV liposomes containing 2.5 mole % of dexamethasone covalently linked to palmitate (DexP) incorporated into the liposome bilayer, with or without 4400 nmol of neutral DMPC lipid, then 360 g of a dual cassette, single plasmid DNA vector containing an EF1-driven Rituximab cDNA (see constructs in
Example 15
Codon-Optimized Rituximab Expression
(124) In this Example, three mice were injected per group. Each mouse received a single IV injection of 1000 nmoles of liposomes containing 2.5 mole % of dexamethasone covalently linked to palmitate (DexP) incorporated into the liposome bilayer of DOTAP liposomes. This was followed two minutes later by a single IV injection of 100 ug of dual cassette, single plasmid EF-1-driven DNA vector encoding Rituximab (see constructs in
Example 16
Codon-Optimized Rituximab Expression
(125) In this Example, three mice were injected per group. Each mouse received a single IV injection of DOTAP cationic liposomes (900 nmoles or 1050 nmoles as indicated) containing 2.5 mole % of dexamethasone covalently linked to palmitate (DexP) incorporated into the liposome bilayer. This was followed two minutes later by a single IV injection of 75 ug of a dual cassette, codon-optimized single plasmid DNA encoding Rituximab (see constructs in
Example 17
Valproic Acid and Theophylline Increase Protein Expression
(126) In this Example, three mice were injected per group. Each mouse received a single IV injection of 1050 nmoles of liposomes containing 2.5 mole % of dexamethasone covalently linked to palmitate (DexP) incorporated into the liposome bilayer of DOTAP liposomes. This was followed two minutes later by a single IV injection of 75 ug of dual cassette plasmid DNA encoding Rituximab. All groups were treated two hours prior to IV injection with an IP injection of 40 mg/kg dexamethasone. Where indicated in
Example 18
Dual or Single Cassette Rituximab Expression
(127) In this Example, mice were pre-injected with 40 mg/kg Dexamethasone IP. Two hours later, they were sequentially injected with either 1050 or 1500 nmols of DOTAP SUV liposomes containing 2.5 mole % of dexamethasone covalently linked to palmitate (DexP) incorporated into the liposome bilayer, followed by 60 g or 75 g of plasmid DNA. Plasmid DNA constructs injected were either codon optimized, double-cassette, single plasmid DNA vectors (see constructs in
Example 19
Lipid to DNA Ratio and Rituximab Expression
(128) In this Example, three mice per group were given IV injections of 900, 1050, 1200, 1500 or 1650 nmols of DOTAP SUV liposomes containing 2.5 mole % of dexamethasone covalently linked to palmitate (DexP) incorporated into the liposome bilayer, suspended in Lactated Ringer's (LR) to a final volume of 100 uL per injection, followed 2 minutes later by 75 ug of a CPG-free, dual cassette, single plasmid Rituximab vector at 100 uL per injection. Mock-injected mice received LR only without lipid or DNA. Serum levels of Rituximab protein and ALT were assayed 24 hrs later.
Example 20
Factor IX Expression with Valproic Acid or Theophylline
(129) In this Example, three mice were injected per group. Each mouse received a single IV injection of 1500 nmoles of DOTAP SUV liposomes containing 2.5 mole % of dexamethasone covalently linked to palmitate (DexP) incorporated into the liposome bilayer. This was followed two minutes later by a single IV injection of 60 ug of a codon optimized, EF-1-driven single cassette DNA vector encoding the human factor IX cDNA (see constructs in
Example 21
Size Determination of Liposomes
(130) In this Example, the sizes of various liposomes were determined. In particular, the liposomes in Table 5 were prepared in 5% w/w glucose, and the size was determined using quasi elastic laser light scattering. The Z-Average particle size of these DOTAP liposomes is shown in Table 5.
(131) TABLE-US-00005 TABLE 5 Liposome Type Z-Average Particle Size (nm) DOTAP Multilamellar Liposomes (MLV) 339 DOTAP 0.1 micron Extruded MLV 146 DOTAP Sonicated Liposomes (SUV) 74
(132) All publications and patents mentioned in the present application are herein incorporated by reference. Various modification and variation of the described methods and compositions of the invention will be apparent to those skilled in the art without departing from the scope and spirit of the invention. Although the invention has been described in connection with specific preferred embodiments, it should be understood that the invention as claimed should not be unduly limited to such specific embodiments. Indeed, various modifications of the described modes for carrying out the invention that are obvious to those skilled in the relevant fields are intended to be within the scope of the following claims.