PROCESS FOR PRODUCTION OF RECOMBINANT TNK-TPA BY PACKED-BED PERFUSION SYSTEM
20210214702 ยท 2021-07-15
Assignee
Inventors
- Kameleshwar Prasad SINGH (Pune, Maharashtra, IN)
- Krishnakumar SUBBIAH (Pune, Maharashtra, IN)
- Sanjay SINGH (Pune, Maharashtra, IN)
- Santosh DESHPANDE (Pune, Maharashtra, IN)
Cpc classification
C12M29/04
CHEMISTRY; METALLURGY
C12Y304/21068
CHEMISTRY; METALLURGY
C12N9/50
CHEMISTRY; METALLURGY
International classification
C12N9/50
CHEMISTRY; METALLURGY
Abstract
The present invention pertains to an economic packed-bed perfusion system for the production of pharmaceutical grade of recombinant TNK-tPA. The present invention involves a cell culture process utilizing CHO cells more specifically in a micro/macro carriers based packed-bed perfusion system. The process of the present invention results in optimum cell growth and maintenance, and minimal build-up of toxic by-products such as lactate and ammonia. The system of the present invention discloses optimized process parameters to enable a resultant TNK-tPA with high yield and pharmaceutical grade purity. The process of the present invention is industrially applicable and possesses economy of scale.
Claims
1. A process for the production of pharmaceutical grade of recombinant TNK-tPA by economic packed-bed perfusion system comprising the steps of : i. culturing of mammalian cells; ii. designing of bioreactor system; iii. optimization of perfusion rate, DO level, agitation speed, temperature and pH; iv. maintenance of levels of toxic by-products; v. management of cell growth and viability; vi. extraction of TNK-tPA from the culture media; wherein, the process of the present invention maintains a high-cell density growth of greater than 14010.sup.6 cellsmL.sup.1.
2. The process as claimed in claim 1, wherein the mammalian cells are selected from the group comprising CHO-K1, CHO-DG44 and CHO-DXB11 cell lines, preferably CHO-DG44 cell line and the culture medium is selected from the group comprising IMDM (Iscove's Modified Dulbecco's Medium), CHO-S-SFM culture medium, Dulbecco's Modified Eagle medium (DMEM), Ex-Cell CHO medium, PowerCHO medium and Hyclone medium, preferably IMDM and CHO-S-SFM.
3. The process as claim in claim 1, wherein the culture is initiated through seed culture development by culturing the recombinant TNK-tPA producing cell line from the cell bank at a cell density in the range of 8-1210.sup.6 cell mL.sup.1, further sub-culturing to 2850 cm.sup.2, 21700 cm.sup.2 and 41700 cm.sup.2, further sub culturing to a cell density in the range of 900-110010.sup.6 cellsL.sup.1 by pooling.
4. The process as claimed in claim 1, wherein the bioreactor comprises a working volume of 30 L to 55 Capacity, comprises a mixture of gases selected from air, oxygen, carbon-di-oxide, nitrogen or mixtures thereof, at a flow rate of, 0.01 VVM to 0.2 VVM, and the pressure inside the bioreactor is from 0.1 mbar to 2 mbar.
5. The process as claimed in claim 1, wherein the bioreactor comprises a packed-bed basket impeller, comprising micro/macro carriers selected from the group comprising Fibra-Cel, Cytodex-1, Cytopore-1, Cytopore-2, polyester microfibers BioNOC II or combinations thereof, preferably Fibra-Cel disk and polyester microfibers, or combinations thereof as packing material.
6. The process as claimed in claim 1, wherein the perfusion rate of the media is in the range of 0.3 VVD to 9 VVD, preferably 2.5 VVD, DO level of the media is in the range of 20% to 80%, preferably 50% to 70%, the agitation of the media is in the range of 150 rpm to 200 rpm, preferably 170 rpm to 190 rpm; the temperature of the media is in the range of 30 C. to 40 C., preferably 33.5 C. to 35 C., more preferably 35.0 C. to 36.0 C.; the pH of the media of the is in the range of 6 to 8, preferably 7.1 to 7.3 and Osmolality is in the range of 260 mOsmkg.sup.1 to 330 mOsmkg.sup.1, preferably 280-300 mOsmkg.sup.1.
7. The process as claimed in claim 1, wherein the level of lactate less than 3 gL.sup.1, preferably 2.5 gL.sup.1, the level of ammonia is less than 100 mM and preferably 50 mM to 90 mM; throughout the entire process for a period ranging from 40 to 60 days.
8. The process as claimed in claim 1, wherein the ratio of lactate:glucose in the media in the range of 2:5 to 8:5, preferably 1:5 to 4:5 for a period of 40 to 60 days.
9. The process as claimed in claim 1, wherein the capacitance is in the range of 50 pFcm.sup.1 to 250 pFcm.sup.1, preferably 170 pFcm.sup.1 to 230 pFcm.sup.1, more preferably 180 pFcm.sup.1 to 200 pFcm.sup.1, perfusion is in the range of 0.3 to 9 VVD, preferable 3 VVD, more preferably 2.5 VVD and residual glucose level in the range of 0.2 gL.sup.1 to 2 gL.sup.1, preferable 0.3 gL.sup.1 to 0.4 gL.sup.1, more preferably 0.1 gL.sup.1 to 0.2 gL.sup.1.
10. The process as claimed in claim 1, wherein the extraction of TNK-tPA from the culture media, is through two-phase continuous filtration process, wherein polyethersulfone (PES) cartridge filter housing membrane type filters are selected with pore sizes of preferably 0.5 n and 0.2 n and combinations thereof.
11. The process as claimed in claim 1, wherein, the TNK-tPA produced is in the specific productivity of 1 to 5 pgCells.sup.1Day.sup.1, with a purity of more than 90% using size exclusion chromatography.
12. The process as claimed in claim 1, wherein the cell specific perfusion rate (CSPR, pL.sup.1Cell.sup.1Day.sup.1) is in the range of 5 pL.sup.1Ce11.sup.1Day.sup.1 to 35 pL.sup.1Ce11.sup.1Day.sup.1 , preferably 10 pL.sup.1Ce11.sup.1Day.sup.1 to 20 pL.sup.1Ce11.sup.1Day.sup.1 throughout the entire production process for a period of 40 day to 60 days.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION OF THE INVENTION
[0025] The present invention discloses an economic packed-bed perfusion system for the production of pharmaceutical grade of recombinant TNK-tPA.
[0026] According to the present invention, perfusion has its conventional meaning in the art i.e. it means that during cultivation, cells are retained by micro/macro carriers that present inside the bioreactor. These carriers not only assist to provide necessary surface area for efficient cell attachment but also to grow the cells at high cell density. During perfusion, fresh nutrient medium is continuously added to the culture and simultaneously the spent medium containing product of interest is removed, while the cells are remained attached with carriers. At high cell density, non-attachable cells may be present in spent medium. In the event of presence of cells with such spent medium, then a cell retention device containing microcarrier screen filter module, in which there is an outflow of liquid having a lower cell density than prior to separation and in which, there is an inflow of cell culture medium, may be used.
[0027] The term microcarrier screen filter may include a screen filter composed of polysulfone material. The surface area of the screen filter may be in the range of 0.02 to 0.5 m.sup.2, preferably 0.024 m.sup.2 and 0.244 m.sup.2. The mesh size of the screen filter is chosen such that the size of the pores is in the range of 120 m to 250 m, preferably 70 m.
[0028] The perfusion system of the present invention may comprise alternating tangential flow within the filter module. Alternating tangential flow as disclosed herein means that the flow is in the same direction i.e. tangential to the hollow fibre, which flow is going back and forth and that there is another flow in a direction substantially perpendicular to the said filter surface. The alternating tangential flow filtration unit enriches the cell concentration by recycling the suspension cells in the culture medium back to the packed-bed system. The disclosure of Alternating Tangential Flow (ATF) filtration unit is disclosed in EP 1720972 is referred herein in entirety. So, using both the technology, carriers based cell retention and ATF based cell retention simultaneously, may provide better high cell density perfusion process than using one technology at one time.
[0029] The process of the present invention utilizes cell culture mediums suitable for the growth of mammalian cells. The cell culture medium of the present invention comprises salts, amino acids, vitamins, lipids, buffers, growth factors, trace elements and carbohydrates. Suitable medium of the present invention includes IMDM (Iscove's Modified Dulbecco's Medium) and CHO-S-SFM culture medium as growth and production medium, respectively.
[0030] In another embodiment, the present invention discloses a process of packed-bed perfusion system for production of recombinant TNK-tPA.
[0031] The present invention is a process for the production of pharmaceutical grade of recombinant TNK-tPA by economic packed-bed perfusion system comprising the steps of: [0032] i. Culturing of mammalian cells; [0033] ii. Designing of bioreactor system; [0034] iii. Optimization of perfusion rate, DO level, agitation speed, temperature and pH; [0035] iv. Maintenance of levels of toxic by-products; [0036] v. Management of cell growth and viability; [0037] vi. Extraction of TNK-tPA from the culture media;
[0038] wherein, the process of the present invention maintains a high-cell density growth of greater than 14010.sup.6 cellsmL.sup.1
[0039] (i) Culturing of Mammalian Cells
[0040] The mammalian cells of the present invention may be selected from the group comprising CHO-K1, CHO-DG44 and CHO-DXB11 cell lines, preferably CHO-DG44 cell line. The media of the present invention may be selected from the group comprising IMDM (Iscove's Modified Dulbecco's Medium), CHO-S-SFM medium, Dulbecco's Modified Eagle medium (DMEM), Ex-Cell CHO medium, PowerCHO medium and Hyclone medium, preferably Isocve's Modified Dulbecco's Medium (IMDM) and CHO-S-SFM cell culture medium.
[0041] The culture of the present invention may be initiated with seed development process to inoculate in the desired scale of bioreactor. The seed culture for the packed-bed perfusion reactor in the present invention may be prepared by sub-culturing the recombinant TNK-tPA producing cell line from the cell bank at a cell density in the range of 81210.sup.6 cellsmL.sup.1. It may be sub-cultured in 1T-175, 2T-175 and 4T-175 flasks with IMDM as the growth medium. It may be followed by sub-culturing in 2850 cm.sup.2, 21700 cm.sup.2 and 41700 cm.sup.2 roller bottles, and then in 210 layer stacks (6200 cm.sup.2) and 240 layer cell stacks (24000 cm.sup.2). The seed culture may be prepared at a cell density in the range of 900110010.sup.6 cellsL.sup.1 by pooling-down the cells from the cell stacks.
[0042] (ii) Designing of Bioreactor System
[0043] Two packed-bed perfusion reactor units [New Brunswick Scientific (NBS) and iCELLis] with a geometric volume of 40 L and 70 L were used for the production of recombinant TNK-tPA.
[0044] The reactors may be operated at a working volume in the range of 30 L or 55 L with the provision of four gases such as CO.sub.2, Air, Nitrogen and Oxygen at a flow rate of 0.01 VVM to 0.2 VVM, wherein CO.sub.2 gas may be utilized to maintain pH in the media and the other gases Air/Nitrogen/Oxygen may be utilized in a mixed proportionate to maintain the level of dissolved oxygen in the media. Importantly, the pressure inside the bioreactor is maintained from 0.1 mbar to 2 mbar. In addition, the reactor contained a packed-bed basket impeller, where micro/macro carriers such as Fibra-Cel, Cytodex-1, Cytopore-1, Cytopore-2, polyester microfibers and BioNOC II may be loaded as a packing material, preferably Fibra-Cel disk and polyester microfibers, for efficient cell attachment purpose to enhance the cell growth at high cell density. Further, the reactor may contain a specially designed inlet and outlet ports, wherein the growth/production medium and alkali may be provided separately through any one of the four inlet ports and removal/harvest of the culture media may be processed through one outlet port.
[0045] (iii) Optimization of Perfusion Rate, DO Level, Agitation Speed, Temperature, pH
[0046] The desired cell density and cell viability may be maintained according to the process and the parameters, set out in the present invention. The perfusion rate of the media of the present invention may be in the range of 0.3 VVD to 9 VVD, preferably 2.5 VVD.
[0047] The DO level of the media of the present invention may be in the range of 20% to 80%, preferably 50% to 70%. The agitation of the media of the present invention may be in the range of 150 rpm to 200 rpm, preferably 170 rpm to 190 rpm. The temperature of the media of the present invention may be in the range of 30 C. to 40 C., preferably 33.5 C. to 35 C., more preferably 35.0 C. to 36.0 C. The pH of the media of the present invention may be in the range of 6 to 8, preferably 7.1 to 7.3. The Osmolality may be in the range of 260 mOsmkg.sup.1 to 330 mOsmkg.sup.1, preferably 280-300 mOsmkg.sup.1.
[0048] The optimised process of the present invention enables a 52% reduction in perfusion (VVD) of the culture medium for two different bioreactor runs operated under optimal condition, from 5 VVD to 2.4 VVD (
[0049] From the prior arts IN01807MU2006A and WO 2012/085933, it discloses that the preferable range of perfusion of production medium is between 2.5 VVD to 5 VVD to maintain the residual glucose in the range of 0.15 gL.sup.1 to 0.75 gL.sup.1 and 0.3 gL.sup.1 to 1.55 gL.sup.1 respectively throughout the production phase. However, the present invention shows an improved optimized process by controlling the perfusion of medium to less than 2.5 VVD based on cell specific perfusion rate feeding strategy, which not only enabled a 52% reduction (
[0050] In case of DO and agitation, the prior arts IN 1807/MUM/2006 and WO 2012/085933, discloses that the preferable range is maintained between 10% to 30% and 80 rpm to 120 rpm respectively. However, the present invention maintains DO and agitation at higher preferable range greater than 30% and 120 rpm, which not only assisted in promoting the TNK-tPA productivity greater than 70 mgL.sup.1, but also led to sustaining of TNK-tPA productivity between 60 mgL.sup.1 to 80 mgL.sup.1 for a period of 40 days. This is evidenced by the results at
[0051] Similarly, from the prior arts IN 1807/MUM/2006 and WO 2012/085933, it claims that the preferable range for temperature is between 31 C. to 39 C. and 33.5 C. respectively, but the present invention preferably maintains the temperature in the lesser range between 33.5 C. to 35 C., which significantly assists in promoting the TNK-tPA productivity greater than 70 mgL.sup.1. In addition, when reducing the temperature below 33.5 C., it significantly affects the TNK-tPA titer, which is evidenced by the results at
[0052] (iv) Maintenance of Levels of Toxic by-products
[0053] The present invention advantageously maintains the level of lactate and ammonia in the media. The level of lactate in the media may be maintained less than 3 gL.sup.1, preferably less than 2.5 gL.sup.1. The level of ammonia in the media may be maintained less than 100 mM, preferably 50 mM to 90 mM throughout the lifecycle of the fermentation process, which is in the lifecycle is for a period of 40 to 60 days.
[0054] The ratio of lactate:glucose in the media may be in the range of 2:5 to 8:5, preferably 1:5 to 4:5 for a period of 40 to 60 days.
[0055] The present invention by maintaining the perfusion to less than 3 VVD significantly reduces the toxic by-product of lactate level (gL.sup.1) by 30% for two different bioreactor runs operated under optimal condition, from 5.9 gL.sup.1 to 4.2 gL.sup.1 (
[0056] In the present invention, a 1.6 fold reduction in perfusion (VVD) of the culture medium for two different bioreactor runs operated under optimal condition, from 5 VVD to 2.4 VVD and 2.5 VVD to 1.6 VVD respectively, significantly decreases the toxic effect of increased alkali addition by 70% from 12 LD.sup.1 to 3.6 LD.sup.1 and 5 LD.sup.1 to 1.5 LD.sup.1 respectively. This is evidenced by the results at
[0057] (v) Management of Cell Growth and Viability
[0058] The process of the present invention advantageously maintains high-cell density growth of greater than 150 pFcm.sup.1 in terms of capacitance measurement, which is equivalent to a viable cell density of 15010.sup.6 cellsmL.sup.1 as per Zhang et al. 2015. The present invention maintains high-cell density growth of above 140 pFcm.sup.1 (in terms of capacitance measurement it is equivalent to 14010.sup.6 cellsmL.sup.1 as per Zhang et al. 2015) even with perfusion of serum-free medium throughout the production phase for a period of 40 days (
[0059] In order to achieve high cell density, the value of capacitance in the reactor may be maintained in the range of 50 pFcm.sup.1 to 250 pFcm.sup.1, preferably 170 pFcm.sup.1 to 230 pFcm.sup.1, more preferably 180 pFcm.sup.1 to 200 pFcm.sup.1. The level of residual glucose in the media may be controlled in the range of 0.1 to 2 gL.sup.1, preferably 0.3 gL.sup.1 to 0.4 gL.sup.1, more preferably 0.1 to 0.2 gL.sup.1 through adjusting the perfusion rate from 0.3 VVD to 9 VVD, preferably 3 VVD, more preferably 2.5 VVD.
[0060] (vi) Extraction of TNK-tPA from the Culture Media
[0061] Extraction of TNK-tPA from the culture media, the harvested culture medium from the packed-bed perfusion reactor may primarily be subjected to two-phase continuous filtration process.
[0062] The filtration process may use a polyethersulfone (PES) cartridge filter housing membrane type and the filters may comprise pore sizes of preferably 0.5 and 0.2 and combinations thereof, and may be stored in a sterile container at 2-8 C. for further use. After filtration, the stored sample may be checked for TNK-tPA content, amount of bacterial endotoxin and bio-burden present, and appearance of sample prior subjecting to purification process.
[0063] The stored sample may be subjected to affinity chromatography-I with a column material of preferably Blue Sepharose 6 FF. The affinity chromatogram may be eluted with a buffer that may be selected from the group comprising phosphate buffer, urea and sodium chloride or combination thereof. The pH may be in the range of 7.0-7.6 to obtain partially purified TNK-tPA. The partially purified TNK-tPA may be further subjected other purification processes.
[0064] The process of the present invention results in TNK-tPA in terms of specific productivity (calculated based on capacitance measurement) of 1 to 10 pgCells.sup.1Day.sup.1, preferably 3 to 5 pgCells.sup.1Day.sup.1, with a purity of more than 90% using size exclusion chromatography. The present invention results in a 4-fold increase in per cell productivity per day under optimal condition, from 1 pgCells.sup.1Day.sup.1 to 4.2 pgCells.sup.1Day.sup.1, based on perfusion kinetics calculation by considering 1 pFCm.sup.1 of capacitance measurement is equivalent to a viable cell density of 110.sup.6 cellsmL.sup.1 as per Zhang et al. 2015.
[0065] Without being limited by theory, the process of the present invention maintains high cell density with high cell viability, low cell aggregation and low cell death, maintains low levels of toxic by-products and results in TNK-tPA in high yield and high purity. The resultant TNK-tPA is of pharmaceutical grade and suitable for various therapeutic uses indicated for TNK-tPA. The product of the present invention is suitable for use in AMI and AIS. Also, the present invention utilizes a packed-bed perfusion fermentation process without the cell-filtration device provides a highly conducive growth environment for achieving high-cell density growth to a maximum of 190 pFcm.sup.1 (in terms of capacitance measurement it is equivalent to a viable cell density growth of 19010.sup.6 cellsmL.sup.1 as per Zhang et al. 2015) without adversely affecting the product concentration (
[0066] Advantages of the Present Invention
[0067] The present invention provides an economical-feasible approach to produce high-volumetric TNK-tPA productivity combined altogether with less perfusion of production medium and sustained high-cell density growth for longer period.
EXAMPLES
Example 1
Effects of Perfusion Rate, Lactate Accumulation and Alkali Addition on TNK-tPA Productivity
[0068] A New Brunswick Scientific (NBS) and iCELLis packed-bed bioreactor with Fibra-Cel disk and polyester microfibers carriers as solid matrix support was operated at 30L and 55 L working volume respectively. CHO-DG44 cells were grown at high cell density in the range of capacitance 100-250 pFcm.sup.1 throughout the production phase, which is equivalent to a viable cell count of 100-25010.sup.6 cellsmL.sup.1 as per Zhang et al. 2015. The perfusion strategy was accomplished through two key aspects, one with perfusion of IMDM medium in the growth phase and other with CHO-S-SFM in the production phase after perfusion of 40-80L IMDM cell culture medium steadily. More importantly, the present invention of the feeding strategy was controlled based on cell specific perfusion rate (CSPR, pL.sup.Kell.sup.1Day.sup.1) throughout the production phase for a period of 40 days. However, from the prior art IN01807MU2006A, it discloses that the residual glucose was maintained in between 0.15 gL.sup.1 to 0.75 gL.sup.1 in the entire production phase by appropriately adjusting the perfusion of culture medium, but it does not discloses on any studies related to CSPR based feeding strategy.
[0069] In the present invention, feeding of the culture medium at high perfusion rate (
[0070] In another study, the effect of critical parameters such as lactate accumulation and alkali addition on TNK-tPA productivity was tested. From
Example 2
Effect of Dissolved Oxygen (DO) and Agitation on TNK-tPA Productivity
[0071] A similar experimental setup that specified above was used to study the effect of dissolved oxygen (DO) and agitation on TNK-tPA productivity. From
Example 3
Controlling of Residual Glucose Level to Increase TNK-tPA Titer
[0072] Measuring of residual glucose level in the cell culture process is a critical parameter as it typically signifies the metabolic status of cells, in terms of glucose consumption and energy requirement for cell growth. With the similar experimental setup specified above, the impact of residual glucose level was tested in this study. From
Example 4
Optimization of Temperature Reduction for Increased TNK-tPA Production
[0073] In this study, the effect of temperature reduction was tested as it is typically considered as a critical factor to enhance the recombinant protein expression. With the similar experimental setup referred above, the culture temperature was initially maintained at 36.5 C. during growth phase of the culture and subsequently reduced up to 32 C. in the production phase. From
Example 5
Effect of Cell Growth on TNK-Productivity
[0074] In this study, the effect of cell growth on TNK-tPA productivity was tested. As the mode of cultivation type is packed-bed perfusion process, the capacitance measurement in pFcm.sup.1 was considered as a direct measure of the viable cells, such that 1 pFcm.sup.1 is equivalent to 110.sup.6 cellsmL.sup.1 as per Zhang et al. 2015. From