ANTIBODIES TARGETING, AND OTHER MODULATORS OF, THE CD276 ANTIGEN, AND USES THEREOF
20230007977 · 2023-01-12
Inventors
- Gundram Jung (Heidelberg, DE)
- Helmut Salih (Heidelberg, DE)
- Latifa Zekri (Heidelberg, DE)
- Martin Pflügler (Heidelberg, DE)
- Sebastian Hömer (Heidelberg, DE)
- Timo Manz (Heidelberg, DE)
Cpc classification
C07K2317/41
CHEMISTRY; METALLURGY
C07K2317/72
CHEMISTRY; METALLURGY
C07K2317/34
CHEMISTRY; METALLURGY
C07K16/2809
CHEMISTRY; METALLURGY
C07K2317/33
CHEMISTRY; METALLURGY
C07K2317/732
CHEMISTRY; METALLURGY
A61P35/00
HUMAN NECESSITIES
International classification
Abstract
The invention pertains to antibodies or other antigen binding proteins targeting the CD276 antigen, also known as B7-H3. The invention provides an improved set of antibodies which bind at new positions within the CD276 antigen and are of particular use as therapeutics in the treatment of CD276 positive cancer. Further the invention provides antibody conjugate and bispecific antibodies which were developed on basis of the novel anti-CD276 antibodies of the invention. Furthermore, the invention discloses the therapeutic use of the antibodies and other modulators in the treatment of CD276 positive cancer. Finally, the nucleic acid constructs encoding the molecules of the invention, recombinant cells expressing them, as well as particular uses and methods are provided.
Claims
1. An isolated antigen binding protein (ABP) which specifically binds to a CD276 protein, or a variant thereof, and wherein the isolated ABP is able to induce an antibody dependent cell-mediated cytotoxicity (ADCC) against a cell expressing the CD276 protein; wherein the ABP comprises at least one, preferably two, Complementary Determining Region (CDR) 3 having an amino acid sequence with at least 80% sequence identity to, or having no more than three or two, preferably one amino acid substitution(s), deletion(s) or insertion(s) relative to, a sequence selected from SEQ ID NOs. 3, 7, 11, 15, 19, 23, 27, 31, 35, and 39.
2. The isolated ABP of claim 1, wherein said ABP further comprises at least one, preferably two, CDR1, and at least one, preferably two, CDR2.
3. The isolated ABP of claim 1, comprising an antibody heavy chain sequence and/or an antibody light chain sequence, or an antigen binding fragment thereof; wherein the antibody heavy chain sequence, or the fragment thereof, comprises a CDR3 having at least 80% sequence identity to, or having no more than three or two, preferably one amino acid substitution(s), deletion(s) or insertion(s) relative to, a sequence selected from SEQ ID NOs. 3, 11, 19, 27, and 35, and/or wherein antibody light chain sequence, or the fragment thereof, comprises a CDR3 having at least 80% sequence identity to, or having no more than three or two, preferably one amino acid substitution(s), deletion(s) or insertion(s) relative to, a sequence selected from SEQ ID NOs. 7, 15, 23, 31, and 39.
4. The isolated ABP of claim 1, comprising an antigen binding fragment of an antibody, wherein said antigen binding fragment comprises CDR1, CDR2 and CDR3, optionally selected from the CDR1, CDR2 and CDR3 sequences having the respective amino acid sequences of SEQ ID Nos. 1, 2, 3, or 5, 6, 7, or 9, 10, 11, or 13, 14, 15, or. 17, 18, 19, or 21, 22, 23, or 25, 26, 27, or. 29, 30, 31, or 33, 34, 35, or 37, 38, 39; in each case independently, optionally with not more than three or two, preferably one, amino acid substitution(s), insertion(s) or deletion(s) compared to these sequences.
5. The isolated ABP of claim 1, wherein the ABP is an antibody, or an antigen binding fragment thereof, composed of at least one, preferably two, antibody heavy chain sequences, and at least one, preferably two, antibody light chain sequences; and the ABP has at least one antigen binding domain which: (A) comprises an antibody heavy chain CDR1 sequence shown in SEQ ID NO: 1, an antibody heavy chain CDR2 sequence shown in SEQ ID NO: 2, and an antibody heavy chain CDR3 sequence shown in SEQ ID NO: 3; and an antibody light chain CDR1 sequence shown in SEQ ID NO: 5, an antibody light chain CDR2 sequence shown in SEQ ID NO: 6, and an antibody light chain CDR3 sequence shown in SEQ ID NO: 7; in each case independently, optionally with no more than three or two, preferably no more than one, amino acid substitution(s), insertion(s) or deletion(s) compared to these sequences; or (B) comprises an antibody heavy chain CDR1 sequence shown in SEQ ID NO: 9, an antibody heavy chain CDR2 sequence shown in SEQ ID NO: 10, and an antibody heavy chain CDR3 sequence shown in SEQ ID NO: 11; and an antibody light chain CDR1 sequence shown in SEQ ID NO: 13, an antibody light chain CDR2 sequence shown in SEQ ID NO: 14, and an antibody light chain CDR3 sequence shown in SEQ ID NO: 15; in each case independently, optionally with no more than three or two, preferably no more than one, amino acid substitution(s), insertion(s) or deletion(s) compared to these sequences; or (C) comprises an antibody heavy chain CDR1 sequence shown in SEQ ID NO: 17, an antibody heavy chain CDR2 sequence shown in SEQ ID NO: 18, and an antibody heavy chain CDR3 sequence shown in SEQ ID NO: 19; and an antibody light chain CDR1 sequence shown in SEQ ID NO: 21, an antibody light chain CDR2 sequence shown in SEQ ID NO: 22, and an antibody light chain CDR3 sequence shown in SEQ ID NO: 23; in each case independently, optionally with no more than three or two, preferably no more than one, amino acid substitution(s), insertion(s) or deletion(s) compared to these sequences; or (D) comprises an antibody heavy chain CDR1 sequence shown in SEQ ID NO: 25, an antibody heavy chain CDR2 sequence shown in SEQ ID NO: 26, and an antibody heavy chain CDR3 sequence shown in SEQ ID NO: 27; and an antibody light chain CDR1 sequence shown in SEQ ID NO: 29, an antibody light chain CDR2 sequence shown in SEQ ID NO: 30, and an antibody light chain CDR3 sequence shown in SEQ ID NO: 31; in each case independently, optionally with no more than three or two, preferably no more than one, amino acid substitution(s), insertion(s) or deletion(s) compared to these sequences; or (E) comprises an antibody heavy chain CDR1 sequence shown in SEQ ID NO: 33, an antibody heavy chain CDR2 sequence shown in SEQ ID NO: 34, and an antibody heavy chain CDR3 sequence shown in SEQ ID NO: 35; and an antibody light chain CDR1 sequence shown in SEQ ID NO: 36, an antibody light chain CDR2 sequence shown in SEQ ID NO: 37, and an antibody light chain CDR3 sequence shown in SEQ ID NO: 38; in each case independently, optionally with no more than three or two, preferably no more than one, amino acid substitution(s), insertion(s) or deletion(s) compared to these sequences.
6. The isolated ABP according to claim 1, wherein said ABP is modified or engineered to increase antibody-dependent cellular cytotoxicity (ADCC), preferably wherein said ABP comprises the SDIE mutations and/or is afucosylated.
7. The isolated ABP according to claim 1, which comprises one or more additional antigen binding domain(s) that bind(s) to antigen(s) other than said CD276, or the variant thereof; such as antigen(s) present on a mammalian T-cell, and most preferably human CD3.
8. The isolated ABP of claim 1, which further comprises a moiety which enhanced antibody dependent cell cytotoxicity (ADCC), preferably wherein the moiety is an immunocytokine (MIC) such as Interleukin-15 (IL-15) or modified IL-15.
9. A bispecific antigen binding protein (ABP) which comprises a first antigen binding domain capable of binding to the CD276 antigen, or the variant thereof, and a second antigen binding domain capable of binding to an antigen expressed on an immune cell, preferably CD3; wherein the first antigen binding domain is an antigen binding domain of the ABP according to claim 1.
10. The bispecific ABP of claim 9, having an activity to bind to a T-cell expressing CD3 and to a CD276 expressing tumor cell, or a tumor cell adjacent cell expressing CD276, such as a tumor vascular cell, preferably wherein the bispecific ABP increases the recruitment of cytotoxic cells to a CD276 expressing cell by binding to CD276 and CD3.
11. An isolated nucleic acid comprising a sequence encoding for an ABP, or for an antigen binding fragment or a monomer, such as a heavy or light chain, of an ABP, of claim 1.
12. A nucleic acid construct (NAC) comprising a nucleic acid of claim 11 and one or more additional sequence features permitting the expression of the encoded ABP or bispecific ABP, or a component of said ABP or bispecific ABP (such as an antibody heavy chain or light chain) in a cell.
13. A recombinant host cell, comprising a nucleic acid of claim 11.
14. A pharmaceutical composition comprising an ABP or bispecific ABP of claim 1, and a pharmaceutically acceptable carrier, stabilizer and/or excipient.
15. (canceled)
16. A method for enhancing T cell-mediated killing of and/or inhibiting the proliferation of CD276 positive tumor or tumor associated cells, or tumor cells or tumor associated cells positive for the variant of CD276 in a subject in need thereof, the method comprising administering to the subject a therapeutically effective amount of an ABP or a bispecific ABP of claim 1.
17. A method for treating or preventing a proliferative disorder characterized by the expression of CD276 in a subject in need thereof, the method comprising administering to the subject a therapeutically effective amount of an ABP or a bispecific ABP of claim 1.
Description
BRIEF DESCRIPTION OF THE FIGURES AND SEQUENCES
[0219] The figures show:
[0220]
[0221]
[0222]
[0223]
[0224]
[0225]
[0226]
[0227] The sequences show:
TABLE-US-00005 Table 1 Antibody Sequences of the Invention: SEQ ID Antibody Sequence- NO: Name: Domain: Amino Acid Sequence: 1 7C4 VH-CDR1 EYTMH 2 7C4 VH-CDR2 GINPNNGGTTYNQIFKN 3 7C4 VH-CDR3 RGYHVSSWYFDV 4 7C4 VH-Variable EVQLEQSGPELVKPGTSVKISCKTSGYTFTEY Full Length TMHWVKQSHGKSLEWIGGINPNNGGTTYN QIFKNKATLTVDKSSSTAYMELRSLTSEDSA VYYCARRGYHVSSWYFDVWGAGTTVTVSS 5 7C4 VL-CDR1 SASSSVSYMH 6 7C4 VL-CDR2 DTSKLAS 7 7C4 VL-CDR3 LQWHSNPLT 8 7C4 VL-Variable DIVLTQSTAIMSASPGEKVTMTCSASSSVSY Full Length MHWYQQKSGTSPKRWIYDTSKLASGVPARF SGSGSGTSYSLTISSMETEDSATYYCLQWHS NPLTFGAGTKLELKR 9 11A7 VH-CDR1 NYWMN 10 11A7 VH-CDR2 EIRLKSNNYATHYAESVKG 11 11A7 VH-CDR3 HAD 12 11A7 VH-Variable EVQLEESGGGLVQPGGSMKLSCVVSGFTFR Full Length NYWMNWVRQSPEKGLEWVAEIRLKSNNYA THYAESVKGRFTISRDDSKSSVYLQMNNLR AEDTGIYYCNSHADWGQGTLVSVSA 13 11A7 VL-CDR1 RASENIYYTLA 14 11A7 VL-CDR2 NANSLED 15 11A7 VL-CDR3 KQGYDVPYT 16 11A7 VL-Variable DIVLTQTTASLAASVGETVTITCRASENIYYT Full Length LAWYQQKQGKSPQLLIYNANSLEDGVPSRF SGSGSGTQYSMKINSMQPEDTATYFCKQGY DVPYTFGGGTKLEIKR 17 8D9 VH-CDR1 SYAMS 18 8D9 VH-CDR2 TISTGGSYTYYADSVKG 19 8D9 VH-CDR3 HLYLYFDV 20 8D9 VH-Variable EVKLEQSGGGLVKPGGSLKLSCAASGFTFSS Full Length YAMSWVRQKPEKRLEWVATISTGGSYTYYA DSVKGRFTISRDDARNTLNLQMSSLRSEDT AMYYCARHLYLYFDVWGAGTTVTVSS 21 8D9 VL-CDR1 RASENIYSYLA 22 8D9 VL-CDR2 NAKTLAE 23 8D9 VL-CDR3 QHHYGTPPYT 24 8D9 VL-Variable DIVMTQSTASLSASVGETVTITCRASENIYSY Full Length LAWYQQKQGKSPQLLVYNAKTLAEGVPSRF SGSGSGTQFSLKINSLQPEDFGSYYCQHHYG TPPYTFGGGTKLEIKR 25 10A7 VH-CDR1 SYYIH 26 10A7 VH-CDR2 WIYPGNVNTNYNERFKG 27 10A7 VH-CDR3 GTYFFAY 28 10A7 VH-Variable EVQLQQSGPELVKPGASVRISCKASGYTFTS Full Length YYIHWVKQRPGQGLEWIGWIYPGNVNTNY NERFKGKATLTADKSSSTAYMQLSSLTSEDS AVYFCAGGTYFFAYWGQGTLVTVSA 29 10A7 VL-CDR1 RASKSISKYLA 30 10A7 VL-CDR2 SGSTLQS 31 10A7 VL-CDR3 QQHNEYPLT 32 10A7 VL-Variable DIVLTQSPSHLAASPGETITINCRASKSISKYL Full Length AWYQEKPGKTNKLLIYSGSTLQSGVPSRFSG SGSNTDFTLTISSLEPEDFAMYYCQQHNEYP LTFGAGTELELKR 33 8H8 VH-CDR1 DFDIN 34 8H8 VH-CDR2 WIFPGDGSTKYDETFKD 35 8H8 VH-CDR3 PRYGGSWFAY 36 8H8 VH-Variable EVQLEQSGPDLVKPGASVKLSCKASGYTFTD Full Length FDINWVRQRPEQGLEWIGWIFPGDGSTKYD ETFKDKATLTTDKSSSTAYMQLSRLTSEDSA VYFCARPRYGGSWFAYWGQGTLVSVSA 37 8H8 VL-CDR1 KSSQSLLYNTIQRSYLA 38 8H8 VL-CDR2 WASTRES 39 8H8 VL-CDR3 QQNYQYPWT 40 8H8 VL-Variable DIVLTQSPSSLTVSVGEKVTMSCKSSQSLLYN Full Length TIQRSYLAWYQQKPGQSPKLLIYWASTRESG VPDRFTGSGSGTDFTLTISSVKAEDLAVYFC QQNYQYPWTFGGGTKLEIKR Abbreviations: VH: “variable heavy chain”, VL: “variable light chain”; CDR: “Complementary Determining Region”
TABLE-US-00006 SEQ ID NO: 41 shows the amino acid sequence of human CD276 isoform 1: 10 20 30 40 50 MLRRRGSPGM GVHVGAALGA LWFCLTGALE VQVPEDPVVA LVGTDATLCC 60 70 80 90 100 SFSPEPGFSL AQLNLIWQLT DTKQLVHSFA EGQDQGSAYA NRTALFPDLL 110 120 130 140 150 AQGNASLRLQ RVRVADEGSF TCFVSIRDFG SAAVSLQVAA PYSKPSMTLE 160 170 180 190 200 PNKDLRPGDT VTITCSSYQG YPEAEVFWQD GQGVPLTGNV TTSQMANEQG 210 220 230 240 250 LFDVHSILRV VLGANGTYSC LVRNPVLQQD AHSSVTITPQ RSPTGAVEVQ 260 270 280 290 300 VPEDPVVALV GTDATLRCSF SPEPGFSLAQ LNLIWQLTDT KQLVHSFTEG 310 320 330 340 350 RDQGSAYANR TALFPDLLAQ GNASLRLQRV RVADEGSFTC FVSIRDFGSA 360 370 380 390 400 AVSLQVAAPY SKPSMTLEPN KDLRPGDTVT ITCSSYRGYP EAEVFWQDGQ 410 420 430 440 450 GVPLTGNVTT SQMANEQGLF DVHSVLRVVL GANGTYSCLV RNPVLQQDAH 460 470 480 490 500 GSVTITGQPM TFPPEALWVT VGLSVCLIAL LVALAFVCWR KIKQSCEEEN 510 520 530 AGAEDQDGEG EGSKTALQPL KHSDSKEDDG QEIA SEQ ID NO: 42 shows the amino acid sequence of human CD276 isoform 2: 10 20 30 40 50 MLRRRGSPGM GVHVGAALGA LWFCLTGALE VQVPEDPVVA LVGTDATLCC 60 70 80 90 100 SFSPEPGFSL AQLNLIWQLT DTKQLVHSFA EGQDQGSAYA NRTALFPDLL 110 120 130 140 150 AQGNASLRLQ RVRVADEGSF TCFVSIRDFG SAAVSLQVAA PYSKPSMTLE 160 170 180 190 200 PNKDLRPGDT VTITCSSYRG YPEAEVFWQD GQGVPLTGNV TTSQMANEQG 210 220 230 240 250 LFDVHSVLRV VLGANGTYSC LVRNPVLQQD AHGSVTITGQ PMTFPPEALW 260 270 280 290 300 VTVGLSVCLI ALLVALAFVC WRKIKQSCEE ENAGAEDQDG EGEGSKTALQ 310 PLKHSDSKED DGQEIA SEQ ID NO: 43 shows the amino acid sequence of human CD276 isoform 3: 10 20 30 40 50 MLRRRGSPGM GVHVGAALGA LWFCLTGALE VQVPEDPVVA LVGTDATLCC 60 70 80 90 100 SFSPEPGFSL AQLNLIWQLT DTKQLVHSFA EGQDQGSAYA NRTALFPDLL 110 120 130 140 150 AQGNASLRLQ RVRVADEGSF TCFVSIRDFG SAAVSLQVAA PYSKPSMTLE 160 170 180 190 200 PNKDLRPGDT VTITCSSYQG YPEAEVFWQD GQGVPLTGNV TTSQMANEQG 210 220 230 240 250 LFDVHSILRV VLGANGTYSC LVRNPVLQQD AHSSVTITPQ RSPTGAVEVQ 260 270 280 290 300 VPEDPVVALV GTDATLRCSF SPEPGFSLAQ LNLIWQLTDT KQLVHSFTEG 310 320 330 340 350 RDQGSAYANR TALFPDLLAQ GNASLRLQRV RVADEGSFTC FVSIRDFGSA 360 370 380 390 400 AVSLQVAAPY SKPSMTLEPN KDLRPGDTVT ITCSSYRGYP EAEVFWQDGQ 410 420 430 440 450 GVPLTGNVTT SQMANEQGLF DVHSVLRVVL GANGTYSCLV RNPVLQQDAH 460 470 480 490 GSVTITGQPM TFPPGPASSA VPLSPAHPPH GSMCWSHWFS RGL SEQ ID NO: 44 shows the amino acid sequence of human CD276 isoform 4: 10 20 30 40 50 MLRRRGSPGM GVHVGAALGA LWFCLTGALE VQVPEDPVVA LVGTDATLCC 60 70 80 90 100 SFSPEPGFSL AQLNLIWQLT DTKQLVHSFA EGQDQGSAYA NRTALFPDLL 110 120 130 140 150 AQGNASLRLQ RVRVADEGSF TCFVSIRDFG SAAVSLQVAA PYSKPSMTLE 160 170 180 190 200 PNKDLRPGDT VTITCSSYQG YPEAEVFWQD GQGVPLTGNV TTSQMANEQG 210 220 230 240 250 LFDVHSILRV VLGANGTYSC LVRNPVLQQD AHSSVTITPQ RSPTGAVEVQ 260 270 280 290 300 VPEDPVVALV GTDATLRCSF SPEPGFSLAQ LNLIWQLTDT KQLVHSFTEG 310 320 330 340 350 RDQGSAYANR TALFPDLLAQ GNASLRLQRV RVADEGSFTC FVSIRDFGSA 360 370 380 390 400 AVSLQVAAPY SKPSMTLEPN KDLRPGDTVT ITCSSYRGYP EAEVFWQDGQ 410 420 430 440 450 GVPLTGNVTT SQMANEQGLF DVHSVLRVVL GANGTYSCLV RNPVLQQDAH 460 470 480 490 500 GSVTITGQPM TFPPEALWVT VGLSVCLIAL LVALAFVCWR KIKQSCEEEN 510 520 530 AGAEDQDGEG EGSKTALQPL KHSDSKEGKD TWA
EXAMPLES
[0228] Certain aspects and embodiments of the invention will now be illustrated by way of example and with reference to the description, figures and tables set out herein. Such examples of the methods, uses and other aspects of the present invention are representative only, and should not be taken to limit the scope of the present invention to only such representative examples.
[0229] In course of the present invention a series of seven antibodies was generated after immunization of mice with recombinant CD276 protein using a hybridization and screening procedure. The binding epitope of the antibodies was then characterized (see
[0233] The antitumor activity of the different constructs was then tested in vitro and in vivo, and CD276 binders with optimal activity in the various formats were identified according to the following examples.
[0234] The examples show:
Example 1: Generation of Antibodies
[0235] Balb/c mice were immunized with recombinant CD276 protein and spleen cells were fused according to standard protocols. Female, 6 month old BALB/C mice were immunized using soluble CD276-Fc fusion protein. The protein used, consists out of the extracellular domain of human CD276 Isoform 2 (NM_001024736.1) with Met1-Thr461, fused to the N-terminus of the Fc region of human IgG1. 50 μg of the Fc fusion protein was repeatedly applied intraperitoneally in a volume of 100 μl PBS for each immunization. The mice were immunized every 10 days for a total of 3 to 4 immunizations with a final intravenous application 4 days prior of the fusion. Supernatants of fused cells were screened for production of specific antibodies by evaluating binding to CD276-transfected mouse cells by flow cytometry. A total of 7 hybridomas were then recloned and grown in advanced DMEM medium supplemented with 1.25% FCS. Antibodies were purified from culture supernatant by protein affinity chromatography and size exclusion chromatography (SEC) on Superdex S200. Purity was evaluated by SDS page and analytical SEC. Sequences of the generated antibodies are provided in table 1.
Example 2: Epitope Mapping of the New CD276-Antibodies
[0236] The human CD276 molecule exists as two isoforms, namely 2IgB7-H3 and 4IgB7-H3, with the latter one being the result of an exon duplication and that constitutes the predominant form in humans. The extracellular structure of the protein is characterized by IgV-IgC-like (2IgB7-H3) or IgV1-IgC1-IgV2-IgC2-like (4IgB7-H3) domains. Mice express only the 2IgB7- H3 isoform. For the epitope mapping, we first generated truncated versions of the 4IgB7-H3 molecule, IgV1-IgC1 and IgV2-IgC2, as Fc fusion proteins. We noted that all antibodies recognized both truncated versions. In addition, none of the antibodies were cross-reactive with the murine protein. Therefore, a sequence alignment between the highly conserved human and murine protein was performed. Finally, we replaced the variable amino acids in the human IgV1-IgC1-Fc protein with the respective amino acids of the murine molecule. This resulted in the epitope map and grouping of the antibodies as shown in
Example 3: Generation and Characterization of Recombinant Antibody Derivatives
[0237] The variable regions of representative antibodies of each group were sequenced, incorporated into different antibody formats and the antitumor activity of the antibodies was tested in suitable functional assays:
(1) SDIE optimized monospecific antibodies: ADCC Graph with 3 SDIE antibodies. Results are provided for the Fe enhanced version of antibodies 7C4 and 8D9 in
(2) Immunocytokine containing a modified IL-15 moiety: shown is NK cell activation and tumor cell killing of antibodies MIC 7C4, 8H8 and 8D9 in
(3) bispecific antibodies with CD265xCD3-specificity Biacore, FACS binding and tumor cell killing: results are shown in
REFERENCES
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