Chimeric Natural Killer Cell Receptors and Method of Using Thereof
20200308248 ยท 2020-10-01
Inventors
Cpc classification
C07K14/705
CHEMISTRY; METALLURGY
A61K35/17
HUMAN NECESSITIES
C12N2740/16043
CHEMISTRY; METALLURGY
A61K48/005
HUMAN NECESSITIES
C07K14/70535
CHEMISTRY; METALLURGY
International classification
C07K14/705
CHEMISTRY; METALLURGY
A61K35/17
HUMAN NECESSITIES
C07K14/715
CHEMISTRY; METALLURGY
Abstract
The present invention concerns providing chimeric natural killer cell receptor (CNK) constructs, genetically engineered T cells expressing such constructs (CNK-T), genetically engineered natural killer cells expressing such constructs (CNK-NK), and the use of CNK-T and CNK-NK to treat a variety of disease states. Specifically, the CNK are designed to target any types of infected, transformed, autoreactive, senescent and stressed cells overexpressing NKG2D ligands. Compared with native T cells and native natural killer cells, the CNK-T and CNK-NK are shown to have improved sensitivity in initiating cytotoxicity against the tumor cells and viral cells in absence or presence of the second genetically modification. Moreover, by incorporating the CNK into the chimeric antigen receptor (CAR) system, the genetically engineered T cells expressing such constructs (CNK/CAR-T) display enhanced sensitivity and superior cytotoxicity against tumor cells. Therefore, such CNK-T and CNK/CAR-T could be applied to the cellular therapy to treat tumor, virus infected diseases and autoimmune diseases directly.
Claims
1. An isolated chimeric NK receptor polypeptide (CNK) comprising an extracellular domain of human NKG2D comprising the polypeptide sequence of SEQ ID NO:12, and an adaptor protein binding to human NKG2D.
2. The polypeptide of claim 1, further comprising a full length human NKG2D comprising amino acid sequence of SEQ ID NO:1.
3. The polypeptide of claim 1, further comprising a mouse NKG2D transmembrane domain, and a human NKG2D intracellular domain, wherein the extracellular domain of human NKG2D, the mouse NKG2D transmembrane, and the human NKG2D intracellular domain comprises the amino acid sequence of SEQ ID NO:2.
4. The polypeptide of claim 1, wherein the adaptor protein is chosen from the group of DAP1 comprising the amino acid sequence of SEQ ID NO:3 and DAP12 comprising the amino acid sequence of SEQ ID NO:4.
5. The polypeptide of claim 1, wherein the adaptor protein is DAP10 or DAP12 fused to T cell activation signaling moiety with a flexible linker, wherein the flexible linker comprises from one to five tag cassettes, wherein each tag cassette is connected to one or more linker modules comprising a (Gly(x) Ser(y))n, wherein n is an integer from 1 to 10, and x and y are independently an integer from 0 to 10 provided that x and y are not both 0.
6. The polypeptide of claim 5, wherein the T cell activation signaling moiety is CD3Z comprising the amino acid sequence of Seq NO:5.
7. The polypeptide of claim 6 where the amino acid sequence further comprises an effector domain, wherein the effector domain is a 4-1BB (CD137), CD2, CD3, CD35, CD25, CD27, CD28, CD30, CD40, CD79A, CD79B, CARD11, DAP10, DAP12, Fc receptor, Fyn, LIGHT, LTR, HVEM, ICOS, Lck, LAG3, LAT, LRP, NOTCH1, NOTCH2, NOTCH3, NOTCH4, OX40 (CD134), ROR2, Ryk, SLAMF1, Slp76, pTa, TCRa, vTCRP, TRIM, Zap70, PTCH2, IL7 receptor, IL15 receptor, GITR or any combination thereof.
8. The polypeptide of claim 1, where the polypeptide sequence further comprises a chemokine receptor that helps to direct T cells moving toward chemokines expressed by tumors.
9. The polypeptide of claim 8, wherein the chemokine receptor is chosen from the group of CCR4, CCR5, CCR6, CCR7, CCR9, CCR2b, CXCR1, CXCR2, CXCR4.
10. The polypeptide of claim 1 where the polypeptide sequence further comprises an engaging molecule.
11. The polypeptide of claim 10, wherein the engaging molecule is an artificial receptor that includes an extracellular ligand binding or affinity domain (AD), a hinge domain (HD), a transmembrane domain (TMD) and one or more intracellular domains (ICD).
12. The polypeptide of claim 11, wherein the ED is the single-chain variable fragment(scFv) or single-chain T cell receptor (scTCR) that specifically binds to a target antigen comprising as tumor associated antigens (TAA) or virus antigen (VA),
13. The polypeptide of claim 11, wherein the HD is selected from the hinge portion of IgG Fc fragment chosen from SEQ ID NO:6 and SEQ ID NO:7.
14. The polypeptide of claim 11, wherein the TMD is selected from DAP10 or DAP12 transmembrane domain, which comprises the amino acid sequence of SEQ ID NO:8 and SEQ ID NO:9, respectively.
15. The polypeptide of claim 11, further comprising an ICD is selected from the intracellular domain (ICD) of the DAP10 or DAP12 fused to intracellular domain of T cell co-stimulatory molecules chosen from CD28, 4-1BB, OX40, and CD3Z.
16. The polypeptide of claim 10, wherein the engaging molecule comprises an affinity molecule chosen from scFv or single chain T cell receptor (scTCR), receptor ectodomain, and ligand binding molecules, which target TAA or VA.
17. The polypeptide of claim 1 where amino acid the sequence further comprises a Chimeric Antigen Receptor (CAR),
18. The polypeptide of claim 17, wherein the CAR comprises VH and VL portions of a scFv that targets TAA, a hinge chosen from a CD8a hinge or IgG4 hinge and configured to attach the scFv to a transmembrane domain, an intracellular effector comprising one or more co-stimulatory signaling domain comprising a CD28 intracellular domains(endodomain) or 4-1BB(CD137) intracellular domain, fused to CD3Z.
19. A method for using the polypeptide of claim 1, comprising the step of using a plasmid DNA, mRNA, lentiviral vector or retroviral vector that encodes the CNK sequence to transduce human T cells or NK cells to express CNK to treat viral diseases, cancer or autoimmune diseases.
20. The method of claim 19, wherein human T cells are chosen from the group of CD3+ T cells, CD8+ T cells or CD4+ T cells isolated from the patients or healthy donor, and NK cells are chosen from donor NK or autologous NK cells.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0029]
[0030]
[0031]
[0032]
[0033]
[0034]
DETAILED DESCRIPTION
[0035] In the following detailed description of embodiments of the invention, reference is made to the accompanying drawings in which like references indicates similar elements, and in which is shown by way of illustration, specific embodiments in which the invention may be practiced. These embodiments are described in sufficient detail to enable those skilled in the art to practice the invention. In other instances, well-known procedures, structures, and techniques have not been shown in detail in order not to obscure the understanding of this description. The following detailed description is, therefore, not to be taken in a limiting sense, and the scoop of the invention is defined only by the appended claims.
[0036] The present invention provides structures and compositions for chimeric NK receptor (CNK) constructs, T cells expressing the constructs (CNK-T), and methods of use of CNK-T and CNK/CAR-T. In some embodiments, the composition comprises a CNK receptor (CNK), wherein the CNK includes a full length or chimeric human NKG2D, with the adaptor protein DAP10 or/and DAP12, or DAP10/12 fusion directly fused to T cell activation signaling CD3(or with the adaptor protein DAP10 fused to the cytoplasmic domain of DAP12, in presence or absence of the other stimulatory signaling moieties, such as CD28, 4-1BB (CD137), OX40.
[0037] In one embodiment, the CNK is introduced with other engaging molecule (EM) or Chimeric Antigen Receptor (CAR), which directs the CNK-T into the tumor antigen expression cells directly and promotes CNK-T proliferation. The EM could be the artificial receptor which is composed of tumor cells targeting antibody fragment or TCR, fused to cytoplasmic domain of co-stimulatory signaling. Moreover, the EM could be any affinity molecule or chemokine receptor, such as CCR5, CXCR4, which can further facilitate CNK-T to be recruited to the tumor site and display anti-tumor function. In some embodiment, the receptors might include the affinity moieties to tumor sites, such as the scFv target tumor antigen fused to IgG4 hinge, CD28 transmembrane, CD28 or 4-1BB intracellular domain. In some embodiment, the receptors might include the affinity moieties to tumor sites, such as the scFv target tumor antigen fused to IgG4 hinge, CD28 transmembrane, CD28 or 4-1BB intracellular domain and to the cytoplasmic domain of CD3((CD3Z).
[0038] The engagement element can be an antibody fragment with high affinity to a target antigen, or an extracellular domain of a receptor, in some embodiments. The engagement element can be an extracellular domain of a ligand, or a self-antigen, in some embodiments.
[0039] The 2A self-cleaving peptide is at equimolar levels of multiple genes on the same mRNA. T2A (SEQ ID NO:11) was used for the constructs.
[0040] In one embodiment, CNK is added with the chimeric antigen receptor (CAR), which is typically comprise an antibody moiety, preferably a scFv or Fab, attached via a linker to a transmembrane domain and two or more intracellular signaling domains, such as costimulatory signaling endodomain, such as CD28, ICOS, 4-1BB (CD137) alone or fused to CD3-z endodomain. Such design not only directs the CNK-T to the tumor sites more efficiently, but also synergizes and improves the CAR-T's cytotoxicity against tumor cells.
[0041] In some embodiments, CNK is introduced with engagement molecules, such as the tumor chemokine receptor, TAA (Tumor Associated Antigen) specific TCR, or TAA specific antibody fused to immune co-stimulatory domain, or TAA targeting chimeric antigen receptor (CAR). This allows the genetically engineered T cells migrate into the tumor sites and induce effective cytotoxicity against tumor cells.
[0042] In certain preferred embodiments, the target cell antigen may be Glypican-3 (GPC3), and the disease to be treated may be Hepatocellular carcinoma (HCC). In certain embodiments, the target cell antigen may be CD123, and the disease to be treated may be acute myeloid leukemia (AML).
[0043] HLA-G is a ligand for NK cell inhibitory receptor KIR2DL4, and therefore expression of this HLA-G by the tumor cells could defend against NK cell-mediated death and induce apoptosis of NK cells. In one embodiment, CNK-T cells don't express NK cell inhibitory receptor and resistance to HLA-G-mediated immune suppression and initiate cytotoxicity against the tumor cells.
[0044] Examples of preferred embodiments of CNK are shown in
[0045] In one embodiment, the T cells or NK cells used to generate the CNK-T or CNK constructs are autologous cells obtained from the patient to be treated. More preferably, the T cells or NK cells used to generate the constructs are allogeneic cells.
[0046] Combined with the composition of the test device and the assembly diagram, the working principle and measuring method of the testing device is described in detail in the following. Reference is made to the accompanying drawings in which like references indicates similar elements, and in which is shown by way of illustration, specific embodiments in which the invention may be practiced. These embodiments are described in sufficient detail to enable those skilled in the art to practice the invention. In other instances, well-known circuits, structures, and techniques have not been shown in detail in order not to obscure the understanding of this description. The following detailed description is, therefore, not to be taken in a limiting sense, and the scoop of the invention is defined only by the appended claims.
[0047] In some embodiments, a chimeric natural killer receptor (CNK) is provided that comprises sequences of NKG2D and its adaptor proteins DAP10 or DAP12 fused to CD3Z (CD3(eta), which enables the genetically engineered T cells to specifically recognize and eliminate the tumor cells or virus infected cells expressing NKG2D ligand.
[0048] An exemplary lentiviral construct encoding a chimeric natural killer receptor comprising NKG2D-T2A-DAP10-CD3Z was designed, which comprises full-length human NKG2D, T2A self-cleavage peptide, the adaptor protein DAP10 fused to CD3 zeta chain. The DNA was synthesized and cloned into the lentiviral vector (such as pLenti CMV GFP-puro) and lentivirus were produced in 293T cells, using the package vectors (such as psPAX and pMD2G). The selected CD3+ T cells were stimulated by CD3/CD28 microbeads and infected by the lentiviral vector encoding NKG2D-T2A-DAP10-Z, and then expand in vitro for 12 days. The cells were submitted to flow cytometry to examine expression of NKG2D in CD8+ and CD4+ T cells (
[0049] To examine CNK-T cells' cytotoxicity against tumor cells expressing NKG2D ligand, cytotoxicity was measured by testing whether lentivirus vector encoding NKG2D-T2A-DAP10-CD3Z transduced T cells (CNK-T) could eliminate the hepatocellular carcinoma (HCC) cell line HepG2 in vitro. As shown in
[0050] CNK-T were co-cultured with the HepG2 cells, at E:T ratio=1:10. After 48 h co-culture, the cells were observed under the fluorescence microscope to examine the CNK-T cells cytotoxicity against HepG2-EGFP cells. The result indicated CNK-T cells eradicated the HepG2 cells as efficiently compared to the non-transduced T cells (
[0051] To further examine the function of CNK design, the cells were also submitted to the flow cytometry to examine the efficiency of CNK-T cells' activation and cytotoxicity against the HepG2 cells. Since HepG2 cells were CD45 negative, it will be easy to distinguish the CD45+ T cells and HepG2 cells. As shown in
[0052] To further assess the cytotoxicity of CNK-T cells against other tumor cells, acute myeloid leukemia (AML) cell lines, THP1 and MV411, were examined to see whether lentivirus vector encoding NKG2D-T2A-DAP10-CD3Z transduced T cells (CNK-T) could eliminate the acute myeloid leukemia (AML) cell line, THP1 and MV411, which also express NKG2D ligand MICA/B (
[0053] CNK-T were co-cultured with the THP1 or MV411 cells, at E:T ratio=1:1. After 48 h co-culture, the cells were submitted to the flow cytometry to examine the cytotoxicity of CNK-T cells against the THP1 and MV411. Since T cells expresses high level of CD8 or CD4, it is feasible to distinguish the T cells and tumor cells. The result indicated CNK-T cells were able to efficiently eliminate both THP1 and MV411 cells in the co-culture according to the percentage of both CD8 and CD4 negative cells left. Moreover, both CD8+ and CD4+ CNK-T significantly upregulated activation marker CD25 and CD137 compared to the non-transduced T cells. Therefore, CNK-T cells can eliminate multiple tumor cells expressing NKG2D ligand.
[0054] An exemplary lentiviral construct encoding a chimeric natural killer receptor comprising NKG2D-T2A-DAP10-CD3Z was introduced with anti-GPC3 CAR elements, which includes anti-GPC3 scFv (Nakano KYT et al., 2007), IgG4 hinge (SEQ ID NO: 7), CD28 transmembrane and cytoplasmic domain fused CD3 zeta chain (
[0055] The target antigen can be a virus associated antigens (VA), which is selected from the any virus associated antigens, the exemplary virus antigen could be HPV associated antigen E6/E7, HBV antigen HBs Ag/HBe Ag, EBV antigens EBNA1/LMP1/LMP2/EBER, CMV antigen pp65/pp150/pp52/, HIV antigen p24, RSV, influenza A and B viruses, parainfluenza viruses, adenoviruses, coronavirus associated antigen S1/S2/N.
[0056] The target antigen can be a TAA, which is selected from the seven groups:
[0057] (1) Antigens Encoded by Mutated Genes, such as mutated CDK4, CTNNB1, CASP8, P53, KRAS, NRAS, EGFR, EGFRvIII, BRCA1, BRCA2, PALB2, ATM, RAD51D, RECQL, CHEK2, c-MET, or
[0058] (2) Cancer-Germline Genes, such as melanoma-antigen encoding (MAGE), MAGEA/MAGEB/MAGEC, BAGE, GAGE, LAGE/NY-ESO1, SSX genes, or
[0059] (3) Differentiation Genes derived from proteins that are expressed or overexpressed in a given type of tumor and the corresponding healthy tissue, such as tyrosinase, gp100/pmel17, Melan-A/MART-1, gp75/TRP1, TRP2, CEA, CLL1, CCL19, CCL21, CD1, CD1a, CD2, CD3, CD4, CD5, CD8, CD11A, CD14, CD15, CD16, CD18, CD19, CD20, CD21, CD22, CD23, CD25, CD29, CD30, CD32b, CD33, CD37, CD38, CD40, CD40L, CD44, CD45, CD46, CD52, CD54, CD55, CD59, CD64, CD66ae, CD67, CD70, CD70L, CD74, CD79a, CD79b, CD80, CD83, CD95, CD123, CD126, CD132, CD133, CD138, CD147, CD154, gp100, or
[0060] (4) Overexpressed Antigens contributing to tumor growth or metastasis, such as RAGE-1, PRAME, survivin, ERBB2 (HER2/NEU), protein Wilms tumor 1 (WT1), EpCAM, MUC1(CA15-3), MUC2, MUC3, MUC4, MUC6, MUC16, PMSA, Placental growth factor (PIGF), HIF-1, EGP-1 (TROP-2), EGP-2, surviving, epidermal glycoprotein 1 (EGP-1, TROP2), EGP-2, FLT3, G250, folate receptor, GAGE, gp100, HLA-DR, CD317(HM1.24), HMGB-1, or
[0061] (5) Embryonic antigen or fetal antigen or stem cell marker, such as CEA(CEACAM-5), CEACAM-6, AFP, OCT4, CD133, CD90, CD13, c-MET, CDC27, or
[0062] (6) Tumor metastasis associated chemokine receptor: such as CXCR2, CXCR4, CXCR7, CCR5, CCR7, CCR9, CCR10, CX3CR1 (Lazennec G et al., 2010), or
[0063] (7) Immune suppressive checkpoint: PD-L1, VISTA, Siglec-15.
[0064] The viral diseases susceptible to the treatment by these reagents and methods includes diseases caused by Coronavirus, SARS, MERS, Ebola, Cytomegalovirus(CMV), Epstein-Barr Virus (EBV), Human Papilloma Virus(HPV), Human T-Lymphotropic Virus(HTLV), Cold viruses, Influenza, Measles, Mumps, Rubella, Polio, Echo, Coxsackie, Hepatitis A, Hepatitis B, Hepatitis C, Rotavirus, Herpes 1 and 2, Rabies, Yellow fever, Dengue fever et al.
[0065] Cancers susceptible to the treatment by these reagents and method include: B-lineage acute lymphoblastic leukemia, B-cell chronic lymphocytic leukemia and B-cell non-Hodgkin's lymphoma. In another embodiment, the cancer is selected from the group consisting of lung cancer, melanoma, breast cancer, prostate cancer, colon cancer, renal cell carcinoma, ovarian cancer, neuroblastoma, rhabdomyosarcoma, lymphoma, acute lymphoblastic leukemia, small cell lung carcinoma, Hodgkin's lymphoma, childhood acute lymphoblastic leukemia, fibrosarcoma, myxosarcoma, liposarcoma, chondrosarcoma, osteogenic sarcoma, chordoma, angiosarcoma, endotheliosarcoma, lymphangiosarcoma, lymphangioendotheliosarcoma, synovioma, mesothelioma, Ewing's tumor, leiomyosarcoma, pancreatic cancer, squamous cell carcinoma, basal cell carcinoma, adenocarcinoma, sweat gland carcinoma, sebaceous gland carcinoma, papillary carcinoma, papillary adenocarcinomas, cystadenocarcinoma, medullary carcinoma, bronchogenic carcinoma, hepatoma, bile duct carcinoma, choriocarcinoma, seminoma, embryonal carcinoma, Wilms' tumor, cervical cancer, testicular tumor, bladder carcinoma, epithelial carcinoma, glioma, astrocytoma, medulloblastoma, craniopharyngioma, ependymoma, pinealoma, hemangioblastoma, acoustic neuroma, oligodendroglioma, meningioma, retinoblastoma, acute lymphocytic leukemia, acute myelocytic leukemia, chronic leukemia, polycythemia vera, lymphoma, multiple myeloma, Waldenstrom's macroglobulinemia, and heavy chain disease. In another embodiment, the cancer is selected from the group consisting of T-cell ALL, B-cell ALL, osteosarcoma, prostate carcinoma, rhabdomyosarcoma, neuroblastoma, Ewing sarcoma, colon carcinoma, gastric carcinoma, lung squamous cell carcinoma, hepatoma, and breast carcinoma.
[0066] Autoimmune disease susceptible to the treatment by these reagents and method includes type 1 diabetes, rheumatoid arthritis, systemic lupus erythematosus, and inflammatory bowel disease et al.
[0067] While the invention has been particularly shown and described as referenced to the embodiments thereof, those skilled in the art will understand that the foregoing and other changes in form and detail may be made therein without departing from the spirit and scope of the invention.
REFERENCE
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TABLE-US-00001 SEQUENCELISTING SEQIDNO:1 HumanNKG2D MGWIRGRRSRHSWEMSEFHNYNLDLKKSDFSTRWQKQRCPVVKSKCRENA SPFFFCCFIAVAMGIRFIIMVTIWSAVFLNSLFNQEVQIPLTESYCGPCP KNWICYKNNCYQFFDESKNWYESQASCMSQNASLLKVYSKEDQDLLKLVK SYHWMGLVHIPTNGSWQWEDGSILSPNLLTIIEMQKGDCALYASSFKGYI ENCSTPNTYICMCIRTV SEQIDNO:2 chimerichumanNKG2DwithmouseNKG2D transmembrane(hmcNKG2D) MGWIRGRRSRHSWEMSEFHNYNLDLKKSDFSTRWQKQRCPVVKSKCRENA SPMFVVRVLAIALAIRFTLNTLMWLAIFKETFQPVLFNQEVQIPLTESYC GPCPKNWICYKNNCYQFFDESKNWYESQASCMSQNASLLKVYSKEDQDLL KLVKSYHWMGLVHIPTNGSWQWEDGSILSPLLTIIEMQKGDCALYASSFK GYIENCSTPNTYICMQRTV SEQIDNO:3 DAP10 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGD LVLTVLIALAVYFLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSD VYSDLNTQRPYYK SEQIDNO:4 DAP12 MIHLGHILFLLLLPVAAAQTTPGERSSLPAFYPGTSGSCSGCGSLSLPLL AGLVAADAVASLLIVGAVFLCARPRRSPAQDGKVYINMPGRG SEQIDNO:5 CD3eta RVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPR RKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDT YDALHMQALPPR SEQIDNO:6 IgG1hinge EPKSCDKTHTCPPCP SEQIDNO:7 IgG4hinge ESKYGPPCPSCP SEQIDNO:8 DAP10transmembranedomain GVLAGIVMGDLVLTVLIALAV SEQIDNO:9 DAP12transmembranedomain LVAADAVASLLIVGAVF SEQIDNO:10 DAP10-DAP12transmembranedomainfusion GVLAGIVMGDLVLTVLIALAVLVAADAVASLLIVGAVF SEQIDNO:11 T2A GSGEGRGSLLTCGDVEENPGP SEQIDNO:12 HumanNKG2Dextracellulardomain MGWIRGRRSRHSWEMSEFHNYNLDLKKSDFSTRWQKQRCP VVKSKCRENASP SEQIDNO:13 Linker GGGGS