Lanthanide toolbox for organelle specific molecular imaging with multi-color
10787465 ยท 2020-09-29
Assignee
Inventors
- Ka Leung Wong (Hong Kong, HK)
- Hongguang LI (Hong Kong, HK)
- Chi Fai CHAN (Hong Kong, HK)
- Rongfeng LAN (Hong Kong, HK)
Cpc classification
International classification
G01N33/50
PHYSICS
Abstract
Provided herein are lanthanide complexes that exhibit specific subcellular localization to primary cilium. The lanthanide complexes provided herein are useful for imaging, tagging, and pull down of binding targets located in primary cilium.
Claims
1. A compound represented by formula (IV): ##STR00026## wherein m is an integer selected from 0, 1, 2 or 3; X is a pharmaceutically acceptable anion; Ln is Eu, Tb, Gd, Yb, Er, Dy, Sm, La, Ce, Pr, Nd, Pm, Tm or Y; A.sub.1 is C, N, or Si; R.sub.1, R.sub.2 and R.sub.3 are independently selected from the group consisting of N(R.sub.12).sub.2; ##STR00027## R.sub.4, R.sub.5, R.sub.6, R.sub.7, R.sub.8, R.sub.9 and R.sub.10 are independently selected from the group consisting of H, alkyl, CF.sub.3, OR.sub.12, and N(R.sub.12).sub.2; R.sub.11 is hydrogen, alkyl, aryl ether, CO.sub.2R.sub.13; or NH(CO)R.sub.14; R.sub.12 and R.sub.13 for each instance is independently selected from the group consisting of hydrogen and alkyl; R.sub.14 is alkyl, cycloalkyl, aryl, or heteroaryl; and n is a whole number selected from 1-8, wherein one of R.sub.1, R.sub.2 and R.sub.3 is not N(R.sub.12).sub.2.
2. The compound of claim 1, wherein R.sub.1 and R.sub.3 are independently N(H)(alkyl).
3. The compound of claim 2, wherein A.sub.1 is C.
4. The compound of claim 2, wherein n is 4, 5, or 6.
5. The compound of claim 4, wherein R.sub.11 is NH(CO)Ar.
6. The compound of claim 1, wherein the compound is represented by the formula (V): ##STR00028## wherein m is an integer selected from 0, 1, 2 or 3; X is a pharmaceutically acceptable anion; Ln is Eu, Tb, Gd, Yb, Er, Dy, Sm, La, Ce, Pr, Nd, Pm, Tm or Y; R.sub.2 is selected from the group consisting of: ##STR00029## R.sub.12 for each instance is independently alkyl; and n is a whole number selected from 1-8.
7. The compound of claim 6, wherein each instance of T.sub.12 is tert-butyl.
8. The compound of claim 7, wherein n is 4, 5, or 6.
9. The compound of claim 1, wherein the compound is selected from the group consisting of: ##STR00030## ##STR00031## ##STR00032## ##STR00033## wherein Ln is Eu, Tb, Gd, Yb, Er, Dy, Sm, La, Ce, Pr, Nd, Pm, Tm or Y; and X is a pharmaceutically acceptable anion.
10. The compound of claim 1, wherein the molecule selectively binds to primary cilium.
11. A method for imaging primary cilium in a biological cell comprising the steps of contacting the biological cell with the compound of claim 1 and imaging the biological cell.
12. The method of claim 11, wherein the imaging is performed using linear fluorescence microscopy using UV light excitation or a two-photon confocal laser scanning microscope.
13. The method of claim 11, wherein the imaging is done in living biological cells.
14. A method for preparing a compound of claim 9, comprising the step of: a) contacting a compound of formula (VI) ##STR00034## with a compound selected from the group consisting of ##STR00035## thereby forming the compound of claim 9.
Description
BRIEF DESCRIPTION OF DRAWINGS
(1) The patent or application file contains at least one drawing executed in color. Copies of this patent or patent application publication with color drawing(s) will be provided by the Office upon request and payment of the necessary fee.
(2) The above and other objects and features of the present invention will become apparent from the following description of the present invention, when taken in conjunction with the accompanying drawings, in which:
(3)
(4)
(5)
(6)
(7)
(8)
(9)
(10)
(11)
(12)
(13)
(14)
(15)
(16)
(17)
(18)
(19)
(20)
(21)
(22)
(23)
(24)
(25)
(26)
(27)
(28)
(29)
(30)
(31)
(32)
(33)
(34)
(35)
(36)
(37)
(38)
(39)
(40)
(41)
(42)
(43)
(44)
(45)
(46)
(47)
(48)
(49)
(50)
(51)
(52)
(53)
(54)
(55)
(56)
(57)
(58)
(59)
(60)
(61)
(62)
(63)
(64)
(65)
(66)
(67)
(68)
(69)
(70)
(71)
(72)
(73)
(74)
(75)
(76)
(77)
(78)
(79)
(80)
(81)
(82)
(83)
(84)
(85)
(86)
(87)
(88)
(89)
(90)
(91)
DETAILED DESCRIPTION OF THE INVENTION
(92) Provided herein are compounds of formula (IV) and formula (V), which exhibit specific subcellular localization in the primary cilium with blue to deep red emission color under ultraviolet (UV)/visible/near infrared (NM) light excitation. The emission properties are tunable by the selection of the function group attached in the parent primary cilium marker (tris(N-(tert-butyl)acetamide) cy den-based lanthanide complexes (molecules of formula (I), (II), and (III))). The present disclosure has applications in organelle specific imaging and protein quantitative analysis. The compounds of formula (IV) and (V) are analogs of tris(N-(tert-butyl)acetamide) cyclen-based lanthanide complexes (molecules of formula (I), (II), and (III) described U.S. patent application Ser. No. 15/604,660, which is hereby incorporated in its entirety) and extend the utility of the molecules of formula (I), (II), and (III) and surprisingly maintain many of their advantageous properties, such as cilium binding specificity, specific subcellular localization, high water solubility, and high stability.
(93) Molecules of formula (I) have been shown to be useful for imaging rod-like organelle in biological cells, wherein the molecule of formula (I) comprises:
(94) ##STR00009##
wherein Ln is selected from Eu, Tb, Gd, Yb, Er, Dy, Sm, La, Ce, Pr, Nd, Pm, Tm and Y, X.sup. is selected from Cl.sup., NO.sub.3.sup., CH.sub.3COO.sup., ClO.sub.4.sup. or other anions; A.sub.1 is selected from C, N or Si; R.sub.1, R.sub.2 and R.sub.3 are jointly or separately selected from NH(tert)Bu, OH.sup. or other amine; R.sub.4, R.sub.5, R.sub.6, R.sub.7, R.sub.8, R.sub.9 and R.sub.10 are jointly or separately selected from H, CF.sub.3, OMe, OEt, OH or NMe.sub.2; R.sub.11 is selected from alkyl, aryl ether, ester, amide or aromatic rings; m is an integer selected from 0, 1, 2 or 3. In particular embodiments, the derivatives of the molecule of the formula (I) can be represented by formula (II):
(95) ##STR00010##
wherein R.sub.11 is selected from:
(96) ##STR00011##
and
wherein R.sub.12, R.sub.13, R.sub.14, R.sub.15, R.sub.16, R.sub.17, R.sub.18, R.sub.19, and R.sub.20 are jointly or separately selected from H, CF.sub.3, OMe, OEt, OH or NMe.sub.2; A.sub.2 is selected from C, N, or Si. Alternatively, the corresponding substituents for X, A.sub.2 and R.sub.n (where n=4-20) in each of the derivatives can be defined as follows:
X=Cl, A.sub.2=C, R.sub.n=H (n=4-10, 12-16);HGL001
X=Cl, A.sub.2=C, R.sub.n=H (n=4-10, 12-15), R.sub.16=CF.sub.3;HGL002
X=Cl, A.sub.2=C, R.sub.n=H (n=4-10, 12-15), R.sub.16=OMe;HGL003
X=Cl, A.sub.2=C, R.sub.n=H (n=4-10, 12-15), R.sub.10=NMe.sub.2;HGL004
X=Cl, A.sub.2=N, R.sub.n=H (n=4-10, 12-15);HGL005
X=Cl, R.sub.n=H (n=4-10, 17-19);HGL006
X=Cl, R.sub.n=H (n=4-10), R.sub.20=OH;HGL007
X=Cl, R.sub.n=H (n=4-10), R.sub.20=OEt;HGL008
X=Cl, A.sub.2=C, R.sub.n=H (n=4-6, 8, 10, 12-16), R.sub.7=R.sub.9=OMe;HGL009
X=Cl, A.sub.2=C, R.sub.n=H (n=4-6, 8, 10, 12-15), R.sub.7=R.sub.9=OMe, R.sub.16=CF.sub.3;HGL010
X=Cl, A.sub.2=C, R.sub.n=H (n=4-6, 8, 10, 12-15), R.sub.7=R.sub.9=R.sub.16=OMe;HGL011
X=Cl, A.sub.2=C, R.sub.n=H (n=4-6, 8, 10, 12-15), R.sub.7=R.sub.9=OME, R.sub.16=NMe.sub.2;HGL012
X=Cl, A.sub.2=N, R.sub.n=H (n=4-6, 8, 10, 12-15), R.sub.7=R.sub.9=OMe;HGL013
X=Cl, A.sub.2=C, R.sub.n=H (n=4-6, 8, 10, 17-19), R.sub.7=R.sub.9=OMe;HGL014
X=Cl, A.sub.2=C, R.sub.n=H (n=4-6, 8, 10), R.sub.7=R.sub.9=OMe, R.sub.20=OH;HGL015
X=Cl, A.sub.2=C, R.sub.n=H (n=4-6, 8, 10), R.sub.7=R.sub.9=OMe, R.sub.20=OEt;HGL016
where Ln refers to lanthanide; OMe refers to a methoxy group; NMe.sub.2 refers to a nitro-dimethyl group; OEt refers to ethoxy group.
(97) Additional analogs of the molecules (I), (II), and (III) have been developed that further extend the utility of these molecules as described herein. It has been surprisingly discovered that the molecules of (I), (II), and (III) can be modified to include reactive functionality capable of protein targeting/pull down or additional fluorescent groups expanding the excitation and emission wavelengths of the molecules, without impacting their ability to localize and selectively bind to cilium present in cells.
(98) In a first aspect, provided herein is a compound represented by the formula (IV):
(99) ##STR00012##
wherein in is an integer selected from 0, 1, 2 or 3;
X is a pharmaceutically acceptable anion;
Ln is Eu, Tb, Gd, Yb, Er, Dy, Sm, La, Ce, Pr, Nd, Pm, Tm or Y;
A.sub.1 is C, N, or Si;
R.sub.1, R.sub.2 and R.sub.3 are independently selected from the group consisting of N(R.sub.12).sub.2;
(100) ##STR00013##
R.sub.4, R.sub.5, R.sub.6, R.sub.7, R.sub.8, R.sub.9 and R.sub.10 are independently selected from the group consisting of H, alkyl, CF.sub.3, OR.sub.12, and N(R.sub.12).sub.2;
R.sub.11 is hydrogen, alkyl, aryl ether, CO.sub.2R.sub.13; or NH(CO)R.sub.14;
R.sub.12 and R.sub.13 for each instance is independently selected from the group consisting of hydrogen and alkyl;
R.sub.14 is alkyl, cycloalkyl, aryl, or heteroalyl; and
n is a whole number selected from 1-8, wherein one of R.sub.1, R.sub.2 and R.sub.3 is not N(R.sub.12).sub.2.
(101) In instances in which one of group member of R.sub.1, R.sub.2 and R.sub.3 is not N(R.sub.12).sub.2, the one group member of R.sub.1, R.sub.2 and R.sub.3 that is not is N(R.sub.12).sub.2 is selected from the group consisting of:
(102) ##STR00014##
and the remaining two group members of R.sub.1, R.sub.2 and R.sub.3 are each independently N(R.sub.12).sub.2.
(103) In certain embodiments, R.sub.1 and R.sub.3 are independently N(H)(alkyl); R.sub.1 and R.sub.2 are independently N(H)(alkyl); or R.sub.2 and R.sub.3 are independently N(H)(alkyl).
(104) In certain embodiments, R.sub.1 and R.sub.3 are independently N(H)(alkyl) and R.sub.2 is selected from the group consisting of:
(105) ##STR00015##
(106) In certain embodiments, the compound of formula (IV) can be represented by the compound of formula (V):
(107) ##STR00016##
wherein m is an integer selected from 0, 1, 2 or 3;
X is a pharmaceutically acceptable anion;
Ln is Eu, Tb, Gd, Yb, Er, Dy, Sm, La, Ce, Pr, Nd, Pm, Tm or Y;
R.sub.2 is selected from the group consisting of:
(108) ##STR00017##
R.sub.12 for each instance is independently alkyl; and
n is a whole number selected from 1-8.
(109) As used herein, the term pharmaceutically acceptable anion refers to the relatively non-toxic, organic or inorganic anions including, but are not limited to, chloride, bromide, iodide, perchlorate, carbonate, bicarbonate, sulfate, phosphate, monohydrogen phosphate, dihydrogen phosphate, metaphosphate, pyrophosphate, acetate, maleate, fumarate, formate, malonate, oxalate, lactate, tartrate, citrate, gluconate, mesylate, besylate, tosylate, succinate, and salicylate sulfate, sulfite, bisulfate, bisulfite, nitrate and nitrite. In certain embodiments, X is selected from the group consisting of chloride, nitrate, acetate, and perchlorate.
(110) In certain embodiments, Ln is Eu, Tb, Gd, Yb, Er, Dy, Sm, La, Ce, Pr, Nd, Pm, Tm or Y, wherein Ln is in the +2, +3, or +4 oxidation state. In certain embodiments. Ln is selected from the group consisting of Eu(III), Tb(III), Gd(III), Yb(III), Er(III), Dy(III), Sm(III), La(III), Ce(III), Pr(III), Nd(III), Pm(III), Tm(III) and Y(III). In certain embodiments, Ln is Eu(III).
(111) In certain embodiments, A.sub.1 is C or N. In certain embodiments, A.sub.1 is C.
(112) In certain embodiments, n is a whole number selected from the group consisting of 2-8; 3-8; 4-8; 4-6; 5-8; 5-7; or 6-8. In certain embodiments, n is 6.
(113) In certain embodiments, R.sub.11 is NH(CO)Ar. In such embodiments, Ar can be represented by
(114) ##STR00018##
wherein R.sub.12, R.sub.13, R.sub.14, R.sub.15, and R.sub.16, are independently selected from H, CF.sub.3, OMe, OEt, OH or NMe.sub.2; or wherein A.sub.2 is N, R.sub.16 is absent; and A.sub.2 is selected from C, N, or Si. In certain embodiments, R.sub.12, R.sub.13, R.sub.14, and R.sub.15 are H; and R.sub.16 is CF.sub.3, OMe, or NMe.sub.2.
In certain embodiments, R.sub.12 is independently for each instance a C.sub.1-C.sub.6 alkyl, such as methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, tert-butyl, n-pentyl, isopentyl, neopentyl, n-hexyl, 2-methylpentane, 3-methylpentane, 2,3-dimethylbutane, 2,2-dimethylbutane, and the like.
(115) In certain embodiments, the compound of formula (IV) is selected from the group consisting of:
(116) ##STR00019## ##STR00020##
wherein Ln is Eu, Tb, Gd, Yb, Er, Dy, Sm, La, Ce, Pr, Nd, Pm, Tm or Y, wherein Ln is in the +2, +3, or +4 oxidation state; and X is chloride, bromide, iodide, perchlorate, carbonate, bicarbonate, sulfate, phosphate, monohydrogen phosphate, dihydrogen phosphate, metaphosphate, pyrophosphate, acetate, maleate, fumarase, formate, malonate, oxalate, lactate, tartrate, citrate, gluconate, mesylate, besylate, tosylate, succinate, and salicylate sulfate, sulfite, bisulfate, bisulfite, nitrate or nitrite. In certain embodiments, X is selected from the group consisting of chloride, nitrate, acetate, and perchlorate.
(117) In certain embodiments, the compound of formula (IV) is selected from the group consisting of:
(118) ##STR00021## ##STR00022##
wherein Ln is Eu; and X.sup. is Cl.sup..
(119) In certain embodiments, there is provided a compound for imaging rod-like organelle in biological cells comprising any of the compounds described herein, wherein the rod-like organelle in biological cells is primary cilium.
(120) In certain embodiments, there is provided a compound for imaging rod-like organelle in biological cells comprising any of the compounds described herein, wherein the imaging is done in living cells.
(121) In certain embodiments, there is provided a compound for imaging rod-like organelle in biological cells comprising any of the compounds described herein, wherein the imaging is performed using a linear fluorescence microscopy under UV light excitation or a two-photon confocal laser scanning microscope.
(122) In certain embodiments, there is provided a compound for imaging rod-like organelle in biological cells comprising a compound selected from the group consisting of:
(123) ##STR00023## ##STR00024##
wherein Ln is Eu(III); and X is selected from the group consisting of chloride, nitrate, acetate, and perchlorate.
(124) In certain embodiments, there is provided a compound for imaging rod-like organelle in biological cells comprising a compound described herein, wherein the compound can selectively bind to proteins in cells. In certain embodiments, the protein is at least one primary cilium related protein.
(125) In certain embodiments, there is provided a compound for imaging rod-like organelle in biological cells comprising a compound described herein being used for quantitative analysis of primary cilium related proteins.
(126) In certain embodiments, there is provided a compound for imaging rod-like organelle in biological cells comprising a compound described herein being used as a disease diagnosis probes.
(127) In certain embodiments, there is provided a compound for imaging rod-like organelle in biological cells comprising a compound described herein being used as an organelle targeting specific vector.
(128) In certain embodiments, there is provided a compound for imaging rod-like organelle in biological cells comprising a compound described herein being conjugated with a drug for combined disease treatment.
(129) In certain embodiments, a compound described herein is first dissolved in an aqueous solution before accumulating in the rod-like organelle in biological cells for imaging.
(130) Also provided herein is a method for imaging rod-like organelle in biological cells comprising accumulating a compound described herein in the rod-like organelle in biological cells directly. In certain embodiments, the rod-like organelle in biological cells is primary cilium.
(131) In certain embodiments, the imaging is performed using a linear fluorescence microscope under UV light excitation or a two-photon confocal laser scanning microscope.
(132) In certain embodiments, imaging the rod-like organelles in biological cells is conducted in living cells.
(133) In certain embodiments, there is provided a method for quantitatively analyzing primary cilium related proteins comprising accumulating a compound described herein in the rod-like organelle in biological cells directly.
(134) In certain embodiments, there is provided a method for diagnosing primary cilium related disease comprising using a compound described herein as a disease diagnosis probe.
(135) In certain embodiments, there is provided a method for targeting primary cilium in biological cells comprising using a compound described herein as an organelle targeting specific vector or agent.
(136) In certain embodiments, there is provided a method for treating primary cilium related disease comprising administering a compound described herein in conjugation with a drug for combined treatment.
(137) The presently claimed invention is further illustrated by the following experiments or embodiments which should be understood that the subject matters disclosed in the experiments or embodiments may only be used for illustrative purpose but are not intended to limit the scope of the presently claimed invention:
(138) Materials and Methods
(139) Synthesis and Characterization of HGEu001 and HGEu002
(140) General Information for the Synthesis.
(141) Tetrahydrofuran (THF), dichloromethane (DCM), acetonitrile (CH.sub.3CN) and N,N-diisopropylethylamine (DIPEA) were dried over calcium hydride (CaH.sub.2). All reactions were carried out with anhydrous solvents under nitrogen atmosphere, unless otherwise specified. All the reagents were obtained commercially with high quality and used without further purification. Reactions were monitored by thin-layer chromatography (TLC) which was carried out on silica gel plates (0.25 mm, 60F-254) by using UV light as visualizing method. Flash column chromatography was carried out on 200-300 mesh silica gel. .sup.1H and .sup.13C NMR spectra were recorded on a 400 (.sup.1H: 400 MHz, .sup.13C: 100 MHz) spectrometer. The following abbreviations were used to explain the multiplicities: s=singlet, d=doublet, t=triplet, q=quartet, dd=doublet of doublets, m=multiplet, br=broad. High resolution mass spectra were obtained from an ESI or MALDI-TOF mass spectrometer. The synthetic route for the primary cilium specific probe HGEu001 and its motif complex. HGEu002 is shown in
Synthesis of N-(4-iodophenyl)-4-(trifluoromethyl)benzamide (Compound 2)
(142) The solution of 4-iodoaniline (5 g, 46.23 mmol) and DIPEA (13.42 mL, 77.06 mmol) in DCM (200 mL), 4-(trifluoromethyl)benzoyl chloride (5.72 mL, 38.53 mmol) was added dropwise at 0 C. in 30 min. The resulting solution was stirred for 12 hours at room temperature. The solvent of the resulting mixture was concentrated to 100 mL, and the white precipitate was collected as product after filtration. (13.41 g, 34.29 mmol, yield=89%) .sup.1H NMR (400 MHz, DMSO-d.sub.6): 10.57 (s, 1H), 8.13 (d, J=4 Hz, 2H), 7.92 (d, J=4 Hz, 2H), 7.72 (d, J=4 Hz, 2H), 7.63 (d, J=4 Hz, 2H); (
Synthesis of N-(4-((2-(hydroxymethyl)pyridin-4-yl)ethynyl)phenyl)benzamide (Compound 3)
(143) (4-ethynylpyridin-2-yl)methanol (0.92 g, 6.8 mmol) was added into the solution of N-(4-iodophenyl)benzamide (Compound 1) (3.36 g, 10.4 mmol), Pd(PPh.sub.3).sub.2Cl.sub.2 (136 mg, 0.21 mmol), CuI (80 mg, 0.42 mmol) and DIPEA (2.0 mL) in freshly distilled THF (200 mL). The resulting mixture was stirred at 45 C. for 6 hours under protection of N.sub.2 gas. Silica gel flash column chromatography (DCM:MeOH=30:1) of the concentrated residue gave a white solid as the product. (2.16 g, 6.4 mmol, yield=94%) .sup.1H NMR (400 MHz, DMSO-d.sub.6): 10.49 (s, 1H), 8.52 (d, J=2 Hz, 1H), 7.96 (d, J=4 Hz, 2H), 7.90 (dd, J.sub.1=4 Hz, J.sub.2=8 Hz, 2H), 7.63-7.60 (m, 3H), 7.57-7.53 (m, 3H), 7.38 (d, J=2 Hz, 1H), 5.52 (br, 1H), 4.58 (s, 2H); (
Synthesis of N-(4((2-(hydroxymethyl)pyridin-4-yl)ethynyl)phenyl)-4-(trifluoro methyl) benzamide (Compound 4)
(144) (4-ethynylpyridin-2-yl)methanol (1.13 g, 8.52 mmol) was added into the solution of N-(4-iodophenyl)-4-(trifluoromethyl)benzamide (Compound 2) (4 g, 10.22 mmol), Pd(PPh.sub.3).sub.4 (197 mg, 0.17 mmol), CuI (65 mg, 0.34 mmol) and DIPEA (20 mL) in freshly distilled THF (200 mL), The resulting mixture was stirred at 45 C. for 6 hours under protection of N.sub.2 gas. Silica gel flash column chromatography (DCM:MeOH=30:1) of the concentrated residue gave a white solid as the product. (3.10 g, 7.84 mmol, yield=92%) .sup.1H NMR (400 MHz, DMSO-d.sub.6): 10.71 (s, 1H), 8.52 (d, J=4 Hz, 1H), 8.15 (d, J=4 Hz, 2H), 7.93 (d, J=4 Hz, 2H), 7.90 (d, J=4 Hz, 2H), 7.64 (d, J=4 Hz, 2H), 7.55 (s, 1H), 7.36 (d, J=2 Hz, 1H), 5.54 (t, J=4 Hz, 1H), 4.14 (d, J=2 Hz, 2H); (
Synthesis of 2,2,2-(1,4,7,10-tetraazacyclododecane-1,4,7-triyl)tris(N-(tert-butyl) acetamide) (Compound 5)
(145) 2-promo-N-(tert-butyl)acetamide (10.1 g, 52.2 mmol) was added into the solution of 1,4,7,10-tetraazacyclododecane (3.0 g, 17.4 mmol) in anhydrous acetonitrile (80 mL), followed by NaHCO.sub.3 (21.9 g, 261 mmol). The resulting solution was stirred at room temperature for 24 hours. After filtration of the resulting mixture, filtrate was concentrated and recrystallized from hot water to obtain a white solid as the product. (4.8 g, 8.7 mmol, yield=50%) .sup.1H NMR (400 MHz, CDCl.sub.3): 6.78 (s, 1H), 6.68 (s, 2H), 3.05 (s, 4H), 3.05 (s, 2H), 2.70 (m, 16H), 1.37 (s, 18H) 1.36 (s, 9H); (
Synthesis of 2,2,2-(10-((4-((4-benzamidophenyl)ethynyl)pyridin-2-yl)methyl)-1,4,7,10-tetranzacyclododecane-1,4,7-triyl)tris(N-(tert-butyl)acetamide) (HGL001)
(146) Methanesulfonyl chloride (0.22 mL, 2.73 mmol) was added into a stirred solution of N-(4((2-(hydroxymethyl)pyridin-4-yl)ethynyl)phenyl)benzamide (Compound 3) (300 mg, 0.91 mmol) in anhydrous DCM (150 mL) and DIPEA (1.59 mL, 9.11 mmol). The resulting mixture was stirred at room temperature for 3 hours. The solution was then washed with saturated NaHCO.sub.3 solution, saturated NH.sub.4Cl solution and brine. The organic layer was dried over anhydrous Na.sub.2SO.sub.4 and concentrated to give a pale yellow solid as the intermediate compound, (4-((4-benzamidophenyl)ethynyl)pyridin-2-yl)methyl methanesulfonate, which was directly used in the next step without further purification. The pale yellow solid was dissolved in dry CH.sub.3CN (50 mL). 2,2,2-(1,4,7,10-tetraazacyclododecane-1,4,7-triyl)tris(N-(tert-butyl)acetamide) (Compound 5, 0.50 g, 0.61 mmol) and anhydrous K.sub.2CO.sub.3 (1.26 g, 9.1 mmol) added. The resulting mixture was stirred at 50 C. for 12 hours under N.sub.2 gas. The solids were filtered off, and the filtrate was concentrated. Silica gel flesh column chromatography (CH.sub.2Cl.sub.2:MeOH=12:1) of the residue gave a pale yellow solid as the product (378 mg, 0.46 mmol, yield=75%). .sup.1H NMR (400 MHz, DMSO-d.sub.6): 10.53 (s, 1H), 8.38 (d, J=2 Hz, 1H), 7.97 (d, J=4 Hz, 2H), 7.94 (d, J=4 Hz, 2H), 7.83 (br, 2H), 7.60-7.53 (m, 7H), 7.38 (d, J=2 Hz, 1H), 3.66 (br, 2H), 3.20-2.07 (m, 22 J), 1.30 (s, 9H), 1.22 (s, 18H); (
Synthesis of 2,2,2-(10((4-((4-(4-(trifluoromethyl)benzamido)phenyl)ethynyl)pyridin-2-yl)methyl)-1,4,7,10-tetraazacyclododecane-1,4,7-triyl)tris(N-(tert-butyl)acetamide) (HGL002)
(147) Methanesulfonyl chloride (0.18 mL, 2.28 mmol) was added into a stirred solution of N-(4-((2-(hydroxymethyl)pyridin-4-yl)ethynyl)phenyl)-4-(trifluoromethyl)benzamide (Compound 4) (300 mg, 0.76 mmol) in anhydrous DCM (150 mL) and DIPEA (1.33 mL, 7.61 mmol).The resulting mixture was stirred at room temperature for 3 hours. After that the solution was then washed with saturated NaHCO.sub.3 solution, saturated NH.sub.4Cl solution and brine. The organic layer was dried over anhydrous Na.sub.2SO.sub.4 and concentrated to give a pale yellow solid as the intermediate compound, (4-((4-(4-(trifluoromethyl)benzamido)phenyl)ethynyl)pyridin-2-yl)methyl methanesulfonate, which was directly used in the next step without further purification. The pale yellow solid was dissolved in dry CH.sub.3CN (50 mL). 2,2,2-(1,4,7,10-tetraazacyclododecane-1,4,7-triyl)tris(N-(tert-butyl)acetamide) (Compound 5, 0.42 g, 0.51 mmol) and anhydrous K.sub.2CO.sub.3 (1.05 g, 7.6 mmol) were added. The resulting mixture was stirred at 50 C. for 12 hours under N.sub.2 gas. The solids were filtered off, and the filtrate was concentrated. Silica gel flesh column chromatography (CH.sub.2Cl.sub.2:MeOH=12:1) of the residue gave a pale yellow solid as the product (354 mg, 0.40 mmol, yield=78%). .sup.1H NMR (400 MHz, DMSO-d.sub.6): 10:78 (s, 1H), 8.38 (d, J=2 Hz, 1H), 8.18 (s, 1H), 8.16 (s, 1H), 7.91 (d, J=4 Hz, 4H), 7.82 (br, 2H), 7.62 (d, J=8 Hz, 2H), 7.57 (d, J=4 Hz, 2H), 7.39 (d, J=2 Hz, 1H), 3.71 (br, 2H), 2.87-2.17 (m, 22H), 1.29 (s, 9H), 1.27 (s, 18H); (
(148) Synthesis of Complex HGEu001
(149) Europium (III) chloride hexahydrate (77 mg, 0.21 mmol) was added to the solution of the ligand (HGL001, 0.20 mmol) in MeOH/H.sub.2O (100 mL, v:v=1:1). The resulting solution was maintained in a pH range of 6.0-6.5 with NaOH solution (0.4 M) and stirred at room temperature for 24 hours. The solvents were removed under vacuum; the residue was dissolved in 1 mL of methanol and dropped into ethyl ether (50 mL). The precipitates were filtered, washed with diethyl ether and dried under vacuum at room temperature. White solids were collected as the products. (222 mg, 0.19 mmol, yield=90%). HRMS (+ESI) m/z calcd. for C.sub.40H.sub.65EuN.sub.9O.sub.4 [MH.sub.2O2H].sup.+ 972.4372, found 972.4378, calcd. for C.sub.47H.sub.66ClEuN.sub.9O.sub.4 [MH.sub.2OH+Cl.sup.].sup.+ 1008.4139, found 1008.4119, calcd. for C.sub.47H.sub.67Cl.sub.2EuN.sub.9O.sub.4 [MH.sub.2O+2Cl].sup.+ 1044.3905, found 1044.3882 (
(150) ##STR00025##
wherein X is H; Ln is Eu.
(151) Synthesis of Complex HGEu002
(152) HGEu002 was obtained from ligand HGL002 with same procedures as HGEu001 (204 mg, 0.19 mmol, yield=95%). HRMS (+ESI) m/z m/z calcd. for C.sub.48H.sub.65EuF.sub.3N.sub.9O.sub.4 [MH].sup.2+ m/z=1041.4324/2=520.7162, found 520.7186. (
(153) TABLE-US-00001 TABLE 1 Solvent gradient of HPLC for the characterization of HGEu001 and HGEu002. Time/min 0.05% TFA in water/% 0.05% TFA in CH.sub.3CN/% 0.0 90 10 5 90 10 15 40 60 20 90 10 25 90 10 Flow rate = 1 mL/min
(154) Synthesis of Complex of HGEu001-Coumarin
(155) An exemplary synthesis of HGEu001-Coumarin, HGEu001-Por, HGEu001-EDECRIN and HGEu001-Biotin is shown in
(156) HGEu001-Coumarin, HGEu001-Por, HGEu001-EDECRIN, and HGEu001-Biotin were each characterized by high resolution mass spectroscopy (HRMS). The results of these tests are shown below and confirm that the desired products were synthesized.
(157) HGEu001-NH.sub.2. Yield=96%; HRMS (+ESI) m/z calcd. for C.sub.49H.sub.70EuN.sub.10O.sub.4 [MH.sub.2O2H].sup.+ 1015.4794, found 1015.4783.
(158) HGEu001-Coumarin. Yield=87%; HRMS (+ESI) m/z calcd. for C.sub.63H.sub.84EuN.sub.11O.sub.7 [MH.sub.2OH].sup.+ 12.59.5767/2=629.7883, found 629.7886.
(159) HGEu001-Por. Yield=90%; HRMS (+ESI) m/z calcd. for C.sub.103H.sub.116EuN.sub.14O.sub.14 [MH.sub.2OH].sup.2+ 1925.8008/2=962.9004, found 962.9009.
(160) HGEu001-EDECRIN. Yield=85%; HRMS (+ESI) m/z calcd. for HGEu001-Biotin. Yield=92%; HRMS (+ESI) m/z calcd. for C.sub.59H.sub.85EuN.sub.12O.sub.6S [MH.sub.2OH].sup.2+ 1242.5648/2=621.2824, found 621.2819.
(161) Photophysical Studies
(162) UV-Visible absorption spectra in the spectral range 200 to 1100 nm were recorded by an HP Agilent UV-8453 Spectrophotometer. The emission spectra and the emission decay lifetimes of HGEu001 and HGEu002 were measured by Horiba Fluorolog-3 spectrophotometer and also measured by Edinburgh instrument ELS920 spectrophotometer for cross checking. (Two spectrophotometers are equipped with a 450 W continuous xenon lamp for steady state emission measurement, 60 W xenon flashlamp for emission life time measurement and an UV-Vis PMT detectorHamamatsuR.sub.928 cooled 216 at 20 C.)
(163) Stability Test Via Europium Emission Titration
(164) Kinetic stability of the europium complexes were conducted to investigate the stability of the complexes in the diluted solution and in the present of 100 times of [EDTA].sup.2 and Ca.sup.2+. EDTA was chose as a competitive ligand for the Eu.sup.3+ ion. Ca.sup.2+ cation serves as competitive ions for the ligand which can bind to the cyclen based macrocyclic ligand. 10 M of europium complex was co-incubated 1 mM of EDTA or Ca.sup.2+ at room temperature, and the europium emission spectra were measured at different time point (1, 24 and 48 hours).
(165) Materials
(166) Tissue Culture
(167) Human cervical cancer HeLa cells were grown in Dulbecco's Modified Eagle Medium (DMEM). Human lung normal diploid fibroblasts MRC-5 and neuroblastoma cells SK-N-SH were provided by Cell resource center of Shanghai Institute of Biological Sciences, Chinese Academy of Sciences; and cultured in MEM (GIBCO 41500034); Human derived liver cells QSG-7701 cells were grown in RPMI-1640 (GIBCO 31800022); all cells were supplemented with 10% (v/v) fetal bovine serum, 1% penicillin and streptomycin at 37 C. and 5% CO.sub.2.
(168) MTT Cell Cytotoxicity Assays
(169) HeLa, SKA-SH, QSG-7701 or MRC-5 cells treated with testing complexes for 24 hours were further incubated with MTT, 3-(4,5-dimethylthiazol-2-yl)-2 and 5-diphenyltetrazolium bromide (0.5 mg; ml) for 4 hours, to produce formazan during cell metabolism. Then, formazan was thoroughly dissolved by dimethyl sulfoxide (DMSO), and the absorbance of solutions was measured in Bio-Rad iMark microplate reader (570 nm). Quadruplicates were performed. Data analysis and plotting were operated by the GraphPad Prism 5 software.
(170) Two-Photon Confocal in Vitro Imaging
(171) Cells were seeded on coverslip in 35-mm culture dishes overnight. And then incubated with HGEu001 or HGEu002 (10 M) for 6 hours, and the cells were washed by PBS 3 times before imaging. For the two-photon time lapses in vitro images of HGEu001 and HGEu002 were observed with different incubation time (3, 6, 18 and 24 hours). Then the unabsorbed complexes were washed out with PBS buffer and the cells were subject to microscopic imaging. The in vitro imaging of HGEu001 and HGEu002 were undertaken on a linear fluorescence microscopy under 375 nm UV light excitation or a confocal laser scanning microscope, Leica TCS SP8, equipped with a Ti:sapphire laser (Libra II, coherent). The excitation beam produced by 690 nm to 1080 nm (fs laser) was focused on the adherent cells through a 63 oil immersion objective.
(172) 3D images obtained by the Z-stacks form the two-photon confocal microscopy and the 3D reconstruction was done with built-in programs of Leica TCS SP8 confocal microscope.
(173) Co-Localization Imaging
(174) (a) 3D Co-Localization Imaging of HGEu001 and HGEu002 with Primary Cilia Markers ARTL13B and IFT88.
(175) Full length ARTL13B (ADP-ribosylation factor-like protein 13B) was PCR amplified from cDNA library and inserted into multiple cloning sites (MCS) of pEGFP-C3 (CLONETECH, #6082-1) using restriction digestion sites of XhoI/EcorI for GFP-ARTL13B expression. The positive recombinant was selected through kanamycin proved by sequencing. Plasmid mEmerald-IFT88-N-18 (intraflagellar transport protein 88 homolog) expressing GFP-IFT88 was a gift from Michael Davidson (Addgene plasmid #54125). Plasmids were amplified in E. coli (DH5) and purified using a StarPrep Plasmid Miniprep Kit (Genstar). Both GFP-ARL13B and GFP-ITF88 for primary cilium tracking were expressed in HeLa cells through lipofectamine2000 (Cat. No.11668-019, Invitrogen) mediated transfection. Briefly, a 3.5 cm dish of HeLa cells (with 70-80% confluent) was transfected with 4 g DNA plus 4 L lipotectamine2000 mixture according to the manufacturer instructions. After incubation for 8 hours, 10 M of HGEu001 or HGEu002 were added and incubated for 6 hours.
(176) (b) Co-Localization Imaging of HGEu001 and HGEu002 with Organelles.
(177) Live cell labeling probes of organelles (mitochondria, lysosome and Golgi apparatus) MitoTracker Green FM (M-7514), LysoTracker Green DND-26 (L-7526) and GolgiTracker Oregon Green (W6748, Wheat Germ Agglutinin) were respectively purchased from ThermoFisher Scientic Inc. and stocked in 20 C.
(178) Three dishes of HeLa cells (110.sup.5) were first incubated with 10 M HGEu001/HGEu002 for 6 hours. Then organelles probes (50 nM, each) were added in parallel to the cells and further incubated for 15 minutes. The cells were washed by PBS 3 times before imaging on the linear fluorescence microscopy. Under the excitation of UV light (375 nm) emission from the channel (610-630 nm) were collected for the emission signals from HGEu001/HGEu002. Under 488 nm blue light excitation, imaging channel in the range between 505 and 555 nm were collected from the emission signal of organelles dyes.
(179) Absorption and Emission Spectra of HGEu001-Coumarin and HGEu001-Por
(180) UV-Visible absorption spectra of HGEu001-Coumarin and HGEu001-Por were recorded by an HP Agilent UV-8453 Spectrophotometer. The emission spectra of HGEu001-Coumarin and HGEu001-Por were measured by Horiba Fluorolog-3 spectrophotometer, which was equipped with a 450 W continuous xenon lamp and a UV-Vis PMT detectorHamamatsuR928 cooled 216 at 20 C. for steady state emission measurement.
(181) Protein Enrichment Using HGEu001-Biotin and HGEu001-EDECRIN.
(182) a) Protein Labeling Using HGEu001-EDECRIN
(183) HGEu001-EDECRIN was reacted with cell lysate at 4 C./16 C./37 C. for 10 min. The protein mixture was then treated with SDS-PAGE loading buffer. The resulting mixture were boiled for 10 min and centrifuged at 14000 rpm for 5 minutes. Then the protein mixture was loaded onto one well of a gel and separated by SDS-PAGE using a Hoefer SE400 Vertical Electrophoresis System (1816 cm). The gel was stained with Coomassie brilliant blue 6250 and imaged. Florescence images of the gel were taken under UV light excitation. The fluorescent protein band was excised and then destained in 50% (v/v) acetonitrile, dehydrated with gradient acetonitrile (50-70%) and then cysteine-alkylated by dithiothreitol/iodoacetamide. MS compatible peptides of each of the bands were generated by In-Gel trypsin digestion (Trypsin Gold, V5280, Mass Spectrometry Grade 100 mg (1 vial), Promega) at 37 C. for 16 hours and extracted using 70% acetonitrile (with 0.02% trifluoroacetic acid) three times. The extracts were combined and vacuum dried, resuspended in LC buffer (95% H2O, 5% acetonitrile, 0.1% formic acid) and readied for mass spectrometry analysis.
(184) b) Protein Pull-Down Using HGEu001-Biotin
(185) HGEu001-Biotin was incubated with cell lysate at 37 C. for 10 min, HGEu001-Biotin binding protein was enriched using Monomeric Avidin UltraLink resin using home-made micro-columns. The proteins were further analyzed by SDS-Gel analysis. Since the amount of enriched protein was too small, there was no one clear band could be seen by coomassie blue staining method. The protein band, which had the same position with fluorescent band of HGEu001-EDECREN labeling and imaging assay as describe above, was excised and further treated for nLC-MS/MS analysis.
Results
(186) Two europium complexes HGEu001 and HGEu002 were synthesized by similar procedures as shown in Scheme 1 (
(187) The photo-physical properties of HGEu001 and HGEu002 were recorded in aqueous solution and have similar europium emission quantum yields (=10%). The five europium f-f emission .sup.5D.sub.0.fwdarw..sup.7F.sub.J bands (J=0-4) were observed and the ratio of these f-f transition intensity is consistent with literature reports of a typical cyclen-based europium complexes with a D2h symmetry (
(188) TABLE-US-00002 TABLE 2 Photophysical properties of the europium complexes HGEu001 and HGEu002. .sub.max/ /M.sup.1 (H.sub.2O)/ (D.sub.2O)/ .sub.L.sup.Eu/ Complex nm .sup.[a] cm.sup.1 .sup.[a] ms .sup.[b] ms .sup.[b] q.sup.[c] % .sup.[d] HGEu001 327 23400 0.56 1.78 0.9 10.5 HGEu002 327 22200 0.56 1.78 0.9 10.3 .sup.[a] Absorption coefficient in H.sub.2O, 298K; .sup.[b] Europium emission decay in FIGS. 12A-12B (.sub.em = 614 nm. .sup.5D.sub.0.fwdarw..sup.7F.sub.2. .sub.ex = 340 nm); .sup.[c]Derived hydration numbers, q (20%) q = 1.2[(k(H.sub.2O) k(D.sub.2O)) (0.25 + 0.07x)] (k = .sup.1, x = number of carbonyl-bound amide NH oscillators); .sup.[d] Overall europium emission quantum yield in H.sub.2O, by-integrated sphere.
(189) TABLE-US-00003 TABLE 3 Cytotoxicity of the complexes HGEu001 and HGEu002 against HeLa, SK-N-SH, QSG-7701 find MRC-5 cell line. (IC.sub.50/M) Complex HeLa SK-N-SH QSG-7701 MRC-5 HGEu001 411 389 395 395 HGEu002 417 437 410 402 Incubation time = 24 hours; Raw data are shown in FIGS. 13A-13B.
DISCUSSION
(190) To further confirm the reputation of the primary cilia-specific in vitro subcellular localization of HGEu001, in vitro imaging of HGEu001 was performed on a multi-photon confocal microscope (
(191) Aiming to confirm this subcellular localization of HGEu001, a positive control has been done. The co-localization experiments have been done by Green Fluorescent Protein-fused with primary cilia marker ARL13B (GFP-ARL13B). The advantages of using Green Fluorescent Protein GFP are its bright luminescence and availability to trace the localization of cellular proteins, such as antibody, at the targets in vitro. However, GFP also gives scientists a lot of hassle in molecular imaging, such as its complicated process in cloning, transfection and their broad emission profile and short emission lifetime presents a low signal to noise ratio problem. There are no commercially available simple primary cilia markers, therefore, the present invention could only compare the subcellular localization between HGEu001 and GFP-ARL13B (ARL13B is the cilium-specific protein required for culinary axoneme structure) and with HGEu002 as a negative control (
(192) The perfect overlapping of the in vitro red emission from HGEu001 (dosage concentration=10 M, incubated for 6 hour after GFP was transfected and expressed) with the green emission from GFP-ARL13B (transfection procedure see ESI) is shown in
(193) To further confirm the selective primary cilia subcellular localization of HGEu001, three dimensional red in vitro imaging of HGEu001 and its motif control HGEu002 were compared with the primary cilia-specific green GFP-ARL13B and also with another primary cilia marker GFP-IFT88 (IFT88 is the component of IFT complex B involved in cilium biogenesis) (
(194) In general, with comprehensive co-staining subcellular localization in vitro imaging studies, the selectivity of HGEu001 in primary cilia in vitro can be confirmed with good confidence. HGEu001 and HGEu002 have very similar structures, however, only HGEu001 preferentially localizes in primary cilium. Since HGEu001 did not show any non-specific staining on other organelles such as lysosome, mitochondria, or Golgi apparatus (
(195) The binding mechanism of the present molecules could be studied by analytical means such as proteomics mass spectrometry. Hence the present invention provides a blueprint or strategy for developing a set of primary cilia targeting probes with special functions or delivering purposes towards primary cilia by simple conjugation with the HGEu001 motif structure. In fact, the imaging protocol established in the present invention can also be used to validate the specific binding of any future probes to primary cilium, with emphasis on visualizing the rod-like structure by 3D imaging.
(196) There is provided in the present invention a direct imaging tool for primary cilia which is specific, and can be excited by light in the near infrared (NIR) region. Comprehensive in vitro studies and several control experiments were done to confirm the specific primary cilium localization of HGEu001, showing a great degree of agreement with GFP-conjugated primary cilia markers ARL13B and IFT88 in co-localization experiments. These novel primary cilium marker could help to understand the functions and roles of primary cilium in life science, such as tumorigenesis.
(197) There is also provided in the present invention a possible template for designing primary cilium-specific molecules with potential modification to become target-specific drug delivery vehicles to help understand the functions of primary cilium and evolve into cancer or diseases treatment applications. A molecular library, HGEu003-HGEu016 (structures shown in
(198) Primary Cilium Imaging Marker with Expanded Excitation and Emission Wavelength.
(199) The excitation of the primary cilium imaging marker HGEu001 can be accomplished by UV light or NIR light (e.g., using a femtosecond laser). Consequently, its application may be limited by the configuration and/or availability of the imaging microscopy instrument(s) on hand. Moreover, the fluorescent filter of some fluorescence microscopy instruments is not turntable, which means that if UV excitation is applied, red emission cannot be collected due to the configuration of the microscopy instrument. For NIR femtosecond laser excitation, the cost of femtosecond laser instruments is still prohibitively high, which has limited the availability of these instruments in research laborites. To extend the range of microscopy instruments that the primary cilium imaging markers described herein can be used in connection with and thus their accessibility, additional excitation and emission wavelengths can be achieved using certain embodiments of the compound of Formula (IV) (e.g., HGEu001-Coumarin and HGEu001-Por). Using such cilium imaging markers removes the need to change the configuration of commonly used and widely available fluorescent/confocal microscopy instruments. The absorption and emission spectra of HGEu001-Coumarin and HGEu001-Por were examined in aqueous solution. (
(200) Primary Cilium Related Protein Enrichment and Analysis
(201) Two new exemplary probes HGEu001-EDECRIN and HGEu001-Biotin were synthesized for primary cilium related protein enrichment. The hypothesis was that HGEu001 allows for specific imaging of primary cilia due to the specific binding of HGEu001 with primary cilium related proteins. From SIDS-PAGE gel analysis of HGEu001-EDECRIN labeling assay, a number of protein bands can be seen from the image of the gel stained by Coomassie blue since the cell lysate contains all the proteins of the cells. However, in the fluorescent imaging using UV excitation only one emission band can be clearly observed. Fluorescent imaging of HGEu001-Biotin was not performed, because the interaction between HGEu001-Biotin and its binding protein target is noncovalent binding, and the HGEu001-Biotin-protein binding partner were destroyed by the SDS-PAGE treating conditions. (
INDUSTRIAL APPLICABILITY
(202) The presently claimed invention provides a water-soluble, simple, stable tris(N-(tert-butyl)acetamide) cyclen-based europium complex HGEu001 which exhibits the specific subcellular localization in the primary cilium with a quantum yield as high as 10% in water and a lifetime of 0.56 ms lifetime. In particular, the present invention provides simplicity of the design and synthesis of a complex HGEu001. The present molecules or complexes are useful in imaging primary cilium in biological cells which serve as an organelle-specific probe for primary cilium in order to identify any disorder, disease or cancer that is associated with this particular organelle. Currently there is no such organelle-specific probe in place, which the present invention can meet this need.