ANTIGEN-BINDING CONSTRUCTS THAT BIND TO AND INHIBIT CATALASE AND/OR SUPEROXIDE DISMUTASE AS WELL AS PHARMACEUTICAL COMPOSITIONS CONTAINING THEM FOR TUMOR THERAPY
20180002445 · 2018-01-04
Inventors
Cpc classification
A61K45/06
HUMAN NECESSITIES
C07K2317/569
CHEMISTRY; METALLURGY
A61K2039/507
HUMAN NECESSITIES
C07K2317/73
CHEMISTRY; METALLURGY
C07K2317/76
CHEMISTRY; METALLURGY
C07K2317/22
CHEMISTRY; METALLURGY
A61P35/00
HUMAN NECESSITIES
International classification
A61K39/395
HUMAN NECESSITIES
Abstract
The invention relates to single domain VHH fragments which specifically bind to and inhibit superoxide dismutase and/or bind to and inhibit catalase and/or bind to and inhibit superoxide dismutase and catalase, in particular for the use in the therapy of tumor diseases.
Claims
1. An antigen-binding construct that specifically binds to superoxide dismutase or catalase or both superoxide dismutase and catalase, characterized in that said construct is a single domain VHH fragment for use in the treatment of tumor diseases.
2. The antigen-binding construct according to claim 1, wherein said construct (i) specifically binds to and inhibits superoxide dismutase; (ii) specifically binds to and inhibits catalase; and/or (iii) specifically binds to and inhibits both superoxide dismutase and catalase.
3. The antigen-binding construct according to claim 1, wherein said construct (i) specifically binds to superoxide dismutase but does not inhibit it; (ii) specifically binds to catalase but does not inhibit it; and/or (iii) specifically binds to and does not inhibit both superoxide dismutase and catalase.
4. The antigen-binding construct according to claim 1, wherein said construct further includes a marker.
5. The antigen-binding construct according to claim 1, wherein said construct can be connected to a cytotoxic agent.
6. The antigen-binding construct according to claim 1, wherein said construct is connected to a cytotoxic agent.
7. The antigen-binding construct according to claim 1, wherein said construct is connected to a component that changes the retention time of said construct in a target organism.
8. The antigen-binding construct according to claim 1, wherein said construct contains at least one CDR sequence selected from the group consisting of SEQ ID NOs: 15-51.
9. The antigen-binding construct according to claim 1, wherein said construct contains at least two CDR sequences selected from the group consisting of SEQ ID NOs: 15-51.
10. The antigen-binding construct according to claim 1, wherein said construct contains at least three CDR sequences selected from group consisting of SEQ ID NOs: 19-51.
11. A pharmaceutical composition containing at least one antigen-binding construct according to claim 1.
12. The pharmaceutical composition according to claim 11, wherein said antigen-binding construct specifically binds to and inhibits catalase.
13. The pharmaceutical composition according to claim 11, wherein said antigen-binding construct specifically binds to and inhibits superoxide dismutase.
14. The pharmaceutical composition according to claim 11, wherein said composition contains at least one antigen-binding construct that binds to and inhibits catalase and at least one construct that specifically binds to and inhibits superoxide dismutase.
15. The pharmaceutical composition according to claim 11, wherein said composition further includes a tumor therapeutic agent.
16. The pharmaceutical composition according to claim 11, wherein said composition is formulated for the treatment of tumor diseases.
17. The pharmaceutical composition according to claim 15, wherein tumor therapeutic agent is taxol.
Description
BRIEF DESCRIPTION OF THE FIGURES
[0030] The following diagrammatic representations first unite the apoptosis-inducing ROS signal paths in transformed cells (scheme 1: HOCI path; scheme 2: NO/peroxynitrite path) and then, show the tumor cell-specific effect of membranous catalase and SOD on these signal paths (Scheme 3 and 4).
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[0035] In the following diagrammatic representations 5 (
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[0038] Schemes 5 and 6 show that catalase and SOD, contrary to the textbook knowledge, are not characterized by highly selective reactions, but rather can execute multiple, partially overlapping functions. Altogether, this results in an outstanding plastic and complex biological effect.
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DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS
[0062] Within the scope of the present invention there were prepared and sequenced various preferred antigen-binding fragments by genetic engineering. The sequences are disclosed in the present application. Particularly important for the antigen-binding sequences are the CDR regions of the constructs. The so-called “complementary determining regions” (in the following briefly CDR) are very specific parts of the variable chains of the immunoglobulins. Said CDR regions are embedded within the framework sequence of immunoglobulins, determine their specificity, and establish contact with the specific antigen to which the immunoglobulins bind. The CDR regions are the most variable parts of the immunoglobulins and substantially contribute to the variety of these molecules. In immunoglobulins having a heavy and a light chain there are six CDR regions. However, if the immunoglobulin only consists of one chain, such as in case of the single domain VHH fragments that are preferred according to the invention, there are three CDR regions.
[0063] Generally, it is important that the CDR regions are almost present unchanged if the bonding specificity is to be maintained. However, it is possible that minor mutations do not adversely affect the functionality of the antibody-binding constructs. This is especially true if the structure of the CDR is not adversely affected by the exchange of an amino acid. Such amino acid exchanges are possible if the newly inserted amino acid is very similar to the replaced amino acid. Thus, in a preferred embodiment the antigen-binding fragments have the CDR regions that were disclosed within the scope of the present application or they differ at most in a smaller number of amino acids from the respectively disclosed CDR sequences that do not substantially change or reduced the bondability and bonding specificity.
[0064] Within the scope of the present invention CDR regions of antigen-binding single domain VHH fragments are disclosed that descent from such constructs that either inhibit or not catalase and/or superoxide dismutase, but do bind thereto. In a preferred embodiment the single domain VHH fragments (nanobodies) according to the invention contain at least one, preferably at least two and most preferably at least three CDR regions, wherein those CDR regions descending from constructs that inhibit catalase and/or superoxide dismutase are especially preferred.
[0065] The constructs according to the invention can preferably be humanized when they are intended for therapeutic application. Here, the framework sequence is replaced by a human framework substance or the non-human sequence is changed into a human sequence by mutations, but the bonding properties are to be maintained.
[0066] For the development of therapeutically usable biological molecules (here nanobodies) often modifications of the amino acid sequence are unavoidable. Since the molecules do not descend from humans, but originally from camelidae it is possible or likely that antibodies against exogenous epitopes are generated. Such antibody reactions would neutralize the effect of the antibody fragment to be used in therapy. To avoid these difficulties the therapeutically used molecules are humanized. The humanization of antibodies or antibody fragments is a technology that is well known in this special field. Typically, it is looked for humane framework sequences (backbone) that have the highest possible similarity to the original molecule. Then, the CDR regions are excised from the original nanobody and transplanted into the human sequence. Here, it is not inevitable that certain adaptions of amino acid sequences have to be made.
[0067] A substantial aspect is that the site on the antigen to which the binding part of the antibody binds is defined by the CDR sequences. During the humanization it might be required to slightly modify one or two of the three CDR sequences in order that the advantageous properties of the antigen-binding part are maintained. Thus, the single domain VHH fragments according to the invention are characterized in that they contain at least one of the CDR sequences, preferably two and especially preferably three CDR sequences, as disclosed in the present application.
[0068] Thus, the object of the present invention are single domain VHH fragments that have at least one, preferably at least two and especially preferably at least three of the following CDR regions characterized by the SEQ ID numbers. These are the sequences with SEQ ID numbers 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, as well as 30. Further preferred CDR sequences derived from clones binding to SOD are CDRs with SEQ ID numbers 31, 32, 33, 34, 35, 36, 37, 38, and 39. Also preferred are CDR sequences with SEQ ID numbers 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, and 51.
[0069] In a further preferred embodiment the constructs according to the invention can further be provided with a marker. For this employment, it is not necessary that the constructs also inhibit the target enzyme in its function. Rather, a specific bond with sufficient affinity is sufficient. Such a bond can be measured in a classical ELISA system in which either human catalase or SOD is bound to a suitable carrier and the complex of enzyme and single domain VHH fragment is detected by a common detection method. On the one hand, a marker can be used to mark the desired tumor cells in order to arrive at diagnostic statements here. On the other hand, the marker may also serve to label the tumor cells for other effectors. For example, as markers such constructs can be employed that connect themselves to effectors that induce apoptosis of the tumor cells. One example of such a marker is an anti CD3 part reacting with the CD3 receptor of cytotoxic T cells. Such an anti CD3 part may be for example an antigen-binding part of an antibody directed against the CD3 receptor.
[0070] In further embodiments of the present invention an antigen-binding construct of the present invention may also be configured such that it can be connected to a cytotoxic agent. As the cytotoxic agent, there are known for example various toxins that descend from various sources, for example bacteria, fungi, or plants. Preferably, this may be the cholera toxin, the botulinus toxin, or streptolysin, to name just a few.
[0071] In a further embodiment, the antigen-binding constructs according to the invention can be connected to a cytotoxic agent via different types and possibilities of bonding. These could also be solid chemical bonds, such as covalent bonds as well as ionic interactions or van der Waals forces.
[0072] In a further embodiment, it is also possible that an antigen-binding construct according to the invention can be or is tightly connected to a radioactive isotope. The radioactive isotope either may serve for the diagnostic detection of the tumor cells or enhance the cytotoxic effect of the antigen-binding construct according to the invention by bringing a radioactive isotope into close proximity to a tumor cell. Preferably, in the therapeutic application such isotopes are employed that only radiate relatively short in order to keep the side effects as low as possible. Moreover, the half-life of the isotope should be relatively short in order to keep the burden of the body and the environment in an acceptable range. Preferably employed are yttrium-90, rhenium-186 or erbium-169.
[0073] In a further embodiment, the antigen-binding constructs according to the invention can be connected to a colorant via various types and possibilities of bonding. These can be solid chemical bonds such as covalent bonds as well as ionic interactions or van der Waals forces. The colorant can be detectable by different common methods. Such constructs should be usable for diagnostic purposes.
[0074] In a further embodiment, pharmaceutical compositions are disclosed that contain at least one antigen-binding construct according to the invention. These pharmaceutical preparations are preferably used to treat tumor diseases, in particular to treat gastric carcinoma.
[0075] The pharmaceutical compositions according to the invention contain at least one antigen-binding construct that specifically binds to and inhibits catalase. In another embodiment, the pharmaceutical compositions according to the invention contain at least one antigen-binding construct that specifically binds to and inhibits superoxide dismutase. In a further embodiment, the pharmaceutical composition contains a hybrid molecule that binds both to catalase and superoxide dismutase and inhibits both target enzymes.
[0076] It is surprising and was not predictable that the synergistic effect of the hybrid molecules exclusively reactivates the NO/peroxynitrite path, whereas anti-SOD alone also reactivates this path, but anti-catalase induces the HOCI path. The exclusive reactivation of the NO/peroxynitrite path by the hybrid molecules represents an advantage for the future applications, because the less complex NO/peroxynitrite path should be further optimized by an additional modulation of the NO metabolism, especially in view of a desired width of the plateau phase of the dose-effect relationship.
[0077] A further advantage of the exclusive reactivation of the NO/peroxynitrite path by anti-SOD or hybrid molecules from anti-SOD and anti-CAT is that due to the signal chemistry (ill. 1-4) in the course of the NO/peroxynitrite path no free H.sub.2O.sub.2 should be present. This is desired because H.sub.2O.sub.2 has a proliferation-stimulating effect on surviving tumor cells that is detrimental to the therapeutic effect. The principle of said advantage of the therapeutic use of anti-SOD or of the hybrid molecule from anti-catalase and anti-SOD disclosed here was not disclosed in EP 11170076.1 and has a surprising effect. This effect indicates the presence of an inventive step.
[0078] In a further preferred embodiment of the present invention there is used at least one antigen-binding construct of the present invention together with an active ingredient having antitumor activity. Various active ingredients having antitumor effects are known. Especially, as chemotherapeutics that can also be present in the present composition there can be mentioned substances such as taxol, cisplatin, endostatin, oxaliplatin, etopside, or colchicine, to name only a few active ingredients as examples. Preferably, taxol is employed.
[0079] The antigen-binding constructs according to the invention are single domain VHH fragments that can be prepared by genetic engineering.
[0080] A precise molecular arrangement of the individual fragments in the antigen-binding construct is of subordinate importance, as long as the desired function, namely binding to and inhibiting catalase and/or superoxide dismutase is preserved.
[0081] The antigen-binding constructs according to the invention are prepared with molecular-biological means. These are not naturally occurring antibodies or Fab fragments prepared therefrom by simple (enzymatic) cleavage. For better understanding, the structure of antibodies might be briefly recapitulated. Antibodies, for example of the IgG type, consist of two Fab fragments and one Fc fragment. Each Fab fragment consists of a light and a heavy chain, wherein the heavy chain can be divided into a variable part (V.sub.H) and a constant part (C.sub.H1) and the light chain can be divided into a variable part (V.sub.L) and a constant part (C.sub.L). Of particular interest are the variable parts V.sub.H and V.sub.L that in turn contain the CDRs (complementarity determining regions) 1-6 that are relevant for antigen-bonding. The bonding properties of the Fab fragments are determined by the CDR regions that are embedded in a framework structure that spatially arranges the individual CDR regions.
[0082] The antigen-binding constructs are single domain VHH fragments (nanobodies). Nanobodies contain only the parts of the heavy chain of the antibody relevant for binding and can be very good expressed in bacterial cells (Muyldermans S. Nanobodies: Natural single-domain antibodies. Ann. Rev. Biochem. 82: 775-797, 2013).
[0083] With the help of various methods of genetic engineering a number of antigen-binding constructs can be prepared. The methods used for that are quite diverse and well known to the person of average skill in the art. Typically, here it is proceeded such that laboratory animals (mice, rats, rabbits, chickens or camels, alpacas etc.) are immunized with the desired antigen. Since camels and alpacas in addition to the conventional antibodies naturally also possess IgG that is exclusively constructed of heavy chains the use of these animals in combination with established selective screening methods results in obtaining single domain antibody encoding nucleic acid sequences. Then, from suitable immunocytes (for example B cells) nucleic acid sequences can be isolated that are further optimized with suitable methods, for example with the so-called phage display. Then, with these methods antigen-binding construct molecules are obtained that specifically bind to the desired antigen. In this context, specifically means that the constructs preferably only bind to the molecule sought, more particularly only to an epitope of said molecule (SOD or catalase). Non-specific cross-reactions are generally undesired.
[0084] Another important property of said antigen-binding constructs is that they sensitively bind to the desired antigen. Sensitively means that already at a very low concentration of the antigen-binding construct a specific binding to the desired antigen or the desired epitope takes place. Expressed in simplified terms, the better an antigen-binding construct binds to the target antigen the more sensitive it is. Since the single domain VHH fragments do not enclose a certain epitope like classical Fab fragments do, but due to their molecular structure bind to spatial recesses of the antigen there result substantial differences with respect to the detectability of certain epitopes by these two types of single domain VHH fragments.
[0085] The antigen-binding constructs according to the invention specifically bind to the superoxide dismutase and inhibit this enzyme. The inhibition of the target molecule superoxide dismutase is effected by the fact that the antigen-binding construct either binds to the catalytically active center of the superoxide dismutase (SOD) or in the proximity of this catalytic center, whereby a steric inhibition of the enzyme is effected. Then, superoxide anions (the typical and specific substrate of SOD) can no longer bind to the enzyme and can not catalytically be converted to H.sub.2O.sub.2 by it.
[0086] The same applies to catalase. The antigen-binding constructs according to the invention specifically and sensitively bind to catalase and inhibit it so that the enzymatic conversion of H.sub.2O.sub.2 into H.sub.2O+1/2 O.sub.2, or peroxynitrite into NO.sub.2.sup.− and 1/2 O.sub.2 is inhibited and the oxidation of NO by the active intermediate “Compound I” of the catalase is prevented.
[0087] In the present application the abbreviations given in the list below were used:
AEBSF 4-(2-aminoethyl)-benzenesulfonyl fluoride [0088] (inhibitor of the NADPH oxidase)
3-AT 3-aminotriazole [0089] (catalase inhibitor)
anti-CAT antibody against catalase
anti-SOD antibody against SOD
(For Reasons of Space in the Pictures the Designations Anti-CAT and Anti-SOD are Replaced by aCAT and aSOD)
CAT catalase
Compound I activated intermediate stage both of catalase of formula [0090] CAT Fe.sup.IV═O.sup.+. and peroxidase of formula POD Fe.sup.IV═O..sup.+. Compound I is formed in the reaction of catalase or peroxidase with one molecule hydrogen peroxide. Catalase can also form Compound I with one molecule peroxynitrite.
Duox dual oxidase [0091] (membranous enzyme consisting of a NADPH oxidase and a peroxidase domain. The peroxidase domain is cleaved off with the help of proteases.)
FBS fetal bovine serum
FeTPPS 5-, 10-, 15-, 20-tetrakis(4-sulfonatophenyl)porphyrinato iron(III) chloride [0092] (peroxynitrite decomposition catalyst)
NO nitric oxide
NOD nitric oxide dioxygenase (oxidizes NO to nitrate)
NOS NO synthase
NOX NADPH oxidase (here, in particular the membranous NOX-1)
POD peroxidase [0093] (in this context in particular the ability of certain peroxidases takes effect that in the presence of hydrogen peroxide they are able to oxidize chloride to HOCI)
PON peroxynitrite
POR cytochrome P 450 oxidoreductase
RAS, RAC oncogenes
ROS reactive oxygen and nitrogen species [0094] (radical and non-radical species such as superoxide anions, hydroxyl radicals, nitric oxide, hydrogen peroxide, HOCI, peroxynitrite, etc.)
siRNA small interfering RNA [0095] (reagent to specifically down-regulate the synthesis of defined gene products)
SOD superoxide dismutase [0096] (here, in particular SOD-1 (Cu.sup.++ in the active center of the tumor cells and MnSOD from bacteria for analytical purposes)
TGF-beta transforming growth factor type beta
EXAMPLES
[0097] The present invention is explained in detail by the following examples. The results of the experiments according to the invention are often illustrated in the figures. There are disclosed sequences of particularly preferred embodiments.
Example 1: Provision of Constructs and Materials
[0098] The following examples were carried out with the following antibodies, Fab fragments, or single domain VHH fragments:
1) Monoclonal antibody (mouse, IgG1) against human SOD-1 (clone SD-G6) (charge number 035K4823). Manufacturer Sigma Aldrich, Schnelldorf, Germany (as a control).
2) Recombinant human Fab fragment against human catalase, format Fab-V5Sx2, prepared by AbDSerotec from a HuCAL® Library (described in detail in EP 859 841 and U.S. Pat. No. 6,300,064). There was employed the construct #AbD15562 with catalase-inhibiting effect (comparison).
3) Recombinant human Fab fragment against human SOD, format Fab-V5Sx2, prepared by AbDSerotec from a HuCAL® Library. There was employed construct #AbD15660 with SOD-inhibiting effect (comparison).
4) Recombinant single domain VHH fragments against human catalase (according to the invention), prepared in cooperation with a commercial supplier.
[0099] The preparation was by immunizing alpacas with human catalase (catalase [EC 1.11.16] purified from human erythrocytes, obtained from Sigma (Schnelldorf), catalogue number C 3556) under the supervision of a veterinary, obtaining RNA from the B cells of the animals, reverse transcription, cloning in E. coli and isolation via phage display technology. Clones encoding for single domain VHH fragments that bind to human catalase were selected by testing supernatants in a suitable ELISA. In a second run, by employing the cell culture system described by Heinzelmann and Bauer (Heinzelmann S. and Bauer G. Multiple protective functions of catalase against intercellular apoptosis-inducing ROS signaling of human tumor cells, Biol. Chem. 391, 675-693, 2010) it was checked which one of the single domain VHH fragments binding to catalase actually results in an inhibition of the catalase, what is expressed as ROS-dependent apoptosis induction in the cells. There were used the single domain VHH fragments aCATcb0972, aCATcb0974, that both bind to human catalase and neutralize it, and aCATcb0973 and aCATcb0975, that bind to human catalase, but do not neutralize it. The clones underlying the single domain VHH fragments were sequenced by standard methods and the amino acid sequence was determined therefrom.
[0100] Preferred embodiments of the invention have the following sequences.
[0101] The sequences of the antigen-binding fragments were analyzed both for DNA and protein level and the antigen-binding regions (CDR) were determined. In the following only the amino acid sequences are described. These antigen-binding regions are substantial for the specificity of the antigen-binding fragments.
[0102] In a preferred embodiment of the present invention the antigen-binding constructs, especially the single domain VHH fragments or nanobodies, contain at least one CDR sequence, preferably at least two and most preferably three CDR sequences.
[0103] In the following, there are described the CDR sequences at the protein level. In the complete sequence the respective positions are given by underlining.
TABLE-US-00001 cb 0972 (binding to and neutralizing catalase): protein sequence (SEQ ID NO: 10): MAQVQLVESGGGLVQAGGSLRLSCAASERTFNTYGMGWFRQAPGKEREFV ATISWSGDSTYYADSVKGRFTISRDNAKNTMYLQMNSLKPEDTAVYYCNA NSEYGDSYWGQGTQVTVSSKKKHHHHHH CDR sequence at protein level: CDR1: RTFNTYGMG (SEQ ID NO: 19) CDR2: TISWSGDSTYYADSVKG (SEQ ID NO: 20) CDR3: NSEYGDSY (SEQ ID NO: 21) cb 0973 (binding to catalase, but not neutralizing): protein sequence (SEQ ID NO: 11): MAEVQLVESGGGLVQPGGSLRLSCAVSGFIFNTYSMRWGRQAPGKGLEWV SSISTGGYSTYADSVKGRFTISRDNAKNLVYLQMNSLKPEDTAVYYCGWG AFVRGERPQGQGTQVTVSSKKKHHHHHH CDR sequence at protein level: CDR1: FIFNTYSMR (SEQ ID NO: 22) CDR2: SISTGGYSTYADSVKG (SEQ ID NO: 23) CDR3: GAFVRGERP (SEQ ID NO: 24) cb 0974 (binding to and neutralizing catalase): protein sequence (SEQ ID NO: 12): MAQVQLVESGGGLVQPGGSLRLSCAASGSIFSIASMGWYRQAPGKQRDLV ATITSDGSTKYADSVKGRFTISRDNAKNTMYLQMNSVKPEDAAVYYCNAD ADDLEPGSYDYDYWGQGTQVTVSSKKKHHHHHH CDR sequence at protein level: CDR1: SIFSIASMG (SEQ ID NO: 25) CDR2: TITSDGSTKYADSVKG (SEQ ID NO: 26) CDR3: DADDLEPGSYDYDY (SEQ ID NO: 27) cb 0975 (binding to catalase, but not neutralizing): protein sequence (SEQ ID NO: 13): MAQVQLVESGGGLVQPGGSLRLSCAASASIFSIYVMAWYRQAPGKQRELV ATVTSGGATNYANSVKGRFTISRDNAKNTMDLQMNSLKPEDTAVYYCNAE DYYDYGLSRSKIYWGQGTQVTVSSKKKHHHHHH CDR sequence at protein level: CDR1: SIFSIYVMA (SEQ ID NO: 28) CDR2: TVTSGGATNYANSVKG (SEQ ID NO: 29) CDR3: EDYYDYGLSRSKIY (SEQ ID NO: 30)
5) Recombinant single domain VHH fragments against human SOD1, prepared in cooperation with a commercial supplier.
[0104] The preparation was by immunizing alpacas with human SOD1 (SOD1=Cu/ZnSOD [EC 1.15.1.1] purified from human erythrocytes, obtained from Sigma (Schnelldorf), catalogue number S 9636) under supervision of a veterinary, obtaining RNA from the B cells of the animals, reverse transcription, cloning in E. coli and isolation via the phage display technology. Clones encoding for single domain VHH fragments that bind to human SOD1 were selected by testing supernatants in a suitable ELISA. In a second run, by employing the cell culture system described by Heinzelmann and Bauer (Multiple protective functions of catalase against intercellular apoptosis-inducing ROS signaling of human tumor cells, Biol. Chem. 391, 675-693, 2010) it was checked which of the single domain VHH fragments binding to SOD actually results in an inhibition of SOD, what is expressed in the tumor system used as ROS-dependent apoptosis induction in the cells, since by the inhibition of SOD the concentration of free superoxide anions dramatically increases due to the absence of the enzymatic dismutation and results in a parallel indirect inhibition of catalase. In the following, this is expressed as ROS-dependent apoptosis induction. In a further control trial the specific inhibition of SOD by recombinant single domain VHH fragments was verified by the fact that the increasing effect of these fragments on apoptosis induction by exogenously added HOCI was examined, as described in Bauer 2013 (HOCI-dependent singlet oxygen and hydroxyl radical generation modulate and induce apoptosis of malignant cells. Anticancer Res 33: 3589-3602, 2013). There was used the single domain VHH fragment aSODcb0989 that binds to and neutralizes human SOD1, and the fragments aSODcb0987 and aSODcb0991 that bind to human SOD1, but do not neutralize it.
[0105] The clones underlying the single domain VHH fragments were sequenced by standard methods and the amino acid sequence was determined therefrom. Preferred embodiments of the invention have the following sequences:
TABLE-US-00002 anti-SOD VHHs: cb 0987 (binding to SOD, but not neutralizing): protein sequence (SEQ ID NO: 14): MAQVQLVESGGGIVQPGGSLRLSCVASESISEIDAMYWHRQAPGKERELV AGITNDGTRYYADSVKGRFTISRDNAKSTLYLQMNSLKFEDTAMYYCAAL PNPPPGYWGQGTQVTVSSKKKHHHHHH CDR sequence at protein level: CDR1: SISEIDAMY (SEQ ID NO: 31) CDR2: GITNDGTRYYADSVKG (SEQ ID NO: 32) CDR3: LPNPPPGY (SEQ ID NO: 33) cb 0989 (binding to and neutralizing SOD): protein sequence (SEQ ID NO: 15): MAQVQLVESGGGLVQSGGSLTLSCTASGFTISNYPMTWVRQAPGKGLEWV SRINSGGDRTLYADSVKGRFTVSRDNARNTMYLQMNNLKPEDTGLYFCAD SGAGWRYWGQGTQVTVSSKKKHHHHHH CDR sequence at protein level: CDR1: FTISNYPMT (SEQ ID NO: 34) CDR2: RINSGGDRTLYADSVKG (SEQ ID NO: 35) CDR3: SGAGWRY (SEQ ID NO: 36) cb 0991 (binding to SOD, but not neutralizing): protein sequence (SEQ ID NO: 16): MAQVQLVESGGGIVQPGGSLRLSCVASESISDIDAMYWHRQAPGKRRELV AGITNDGTEYFADSVKGRFAISRDNTKSSLYLQMNSLKLEDTAMYYCATL PNPPPGYWGQGTQVTVSSKKKHHHHHH CDR sequence at protein level: CDR1: SISDIDAMY (SEQ ID NO: 37) CDR2: GITNDGTEYFADSVKG (SEQ ID NO: 38) CDR3: LPNPPPGY (SEQ ID NO: 39)
[0106] By connecting clones cb 0972 (neutralizing catalase) and cb 0989 (neutralizing SOD) via a linker the bispecific hybrid single domain VHH fragments cb 1081 (anti-CATanti-SOD) and cb 1082 (anti-SODanti-CAT) were prepared by genetic engineering.
TABLE-US-00003 Bispecific anti-Catalase-SOD VHH cb 1081: protein sequence (SEQ ID NO: 17): MAQVQLVESGGGLVQAGGSLRLSCAASERTFNTYGMGWFRQAPGKEREFV ATISWSGDSTYYADSVKGRFTISRDNAKNTMYLQMNSLKPEDTAVYYCNA NSEYGDSYWGQGTQVTVSSGGGGSGGGGSGGGGSAQVQLVESGGGLVQSG GSLTLSCTASGFTISNYPMTWVRQAPGKGLEWVSRINSGGDRTLYADSVK GRFTVSRDNARNTMYLQMNNLKPEDTGLYFCADSGAGWRYWGQGTQVTVS SKKKHHHHHH CDR sequence at protein level: CAT CDR1: RTFNTYGMG (SEQ ID NO: 40) CAT CDR2: TISWSGDSTYYADSVKG (SEQ ID NO: 41) CAT CDR3: NSEYGDSY (SEQ ID NO: 42) SOD CDR1: FTISNYPMT (SEQ ID NO: 43) SOD CDR2: RINSGGDRTLYADSVKG (SEQ ID NO: 44) SOD CDR3: SGAGWRY (SEQ ID NO: 45) Bispecific anti-SOD-Catalase VHH cb 1082 protein sequence (SEQ ID NO: 18): MAQVQLVESGGGLVQSGGSLTLSCTASGFTISNYPMTWVRQAPGKGLEWV SRINSGGDRTLYADSVKGRFTVSRDNARNTMYLQMNNLKPEDTGLYFCAD SGAGWRYWGQGTQVTVSSGGGGSGGGGSGGGGSAQVQLVESGGGLVQAGG SLRLSCAASERTFNTYGMGWFRQAPGKEREFVATISWSGDSTYYADSVKG RFTISRDNAKNTMYLQMNSLKPEDTAVYYCNANSEYGDSYWGQGTQVTVS SKKKHHHHHH CDR sequence at protein level: SOD CDR1: FTISNYPMT (SEQ ID NO: 46) SOD CDR2: RINSGGDRTLYADSVKG (SEQ ID NO: 47) SOD CDR3: SGAGWRY (SEQ ID NO: 48) CAT CDR1: RTFNTYGMG (SEQ ID NO: 49) CAT CDR2: TISWSGDSTYYADSVKG (SEQ ID NO: 50) CAT CDR3: NSEYGDSY (SEQ ID NO: 51)
[0107] The NADPH oxidase inhibitor 4-(2-aminoethyl-benzenesulfonyl fluoride (AEBSF), the catalase inhibitor 3-aminotriazole (3-AT), the HOCI scavenger taurine, the singlet oxygen scavenger histidine, glucose oxidase (GOX) were obtained from Sigma (Schnelldorf, Germany). Peroxynitrite and the “peroxynitrite decomposition catalyst” (functional peroxynitrite scavenger) 5-, 10-, 15-, 20-tetrakis(4-sulfonatophenyl)porphyrinato iron(III) chloride (FeTPPS) were obtained from Calbiochem (Merck Biosciences GmbH, Schwalbach/Ts, Germany).
[0108] A precise description of these active ingredients is found in the publications Heinzelmann and Bauer (2010, Multiple protective functions of catalase against intercellular apoptosis-inducing ROS signaling of human tumor cells, Biol. Chem. 391, 675-693), and Bechtel and Bauer (2009, Catalase protects tumor cells against apoptosis induction by intercellular ROS signaling, Anticancer Res 29: 4541-4557).
Example 2: Gene Knockout with siRNAs
[0109] For the analysis described in
TABLE-US-00004 (SEQ ID NO: 1) r(UUCUCCGAACGUGUCACGU)dTdT (sense) (SEQ ID NO: 2) ACGUGACACGUUCGGAGAA)dTdT (antisense). [0111] The manufacturer has found that siCo does not influence the expression of any known gene. [0112] B. “High-performance validated siRNAs” for the knockdown of: FAS receptor (“siRNA FAS R.”)
TABLE-US-00005 (SEQ ID NO: 3) (Hs_FAS_7_HP validated siRNA, catalogue No. SI02654463; target sequence: AAG GAG TAC ACA GAC AAA GCC);
caspase-8 (“siRNA CASP8”)
TABLE-US-00006 (SEQ ID NO: 4) (Hs_CASP8_11_HP validated siRNA; catalogue No. SI02661946, target sequence: AAG AGT CTG TGC CCA AAT CAA);
caspase-9 (“siRNA CASP-9”)
TABLE-US-00007 (SEQ ID NO: 5) (Hs_CASP9_7_HP validated siRNA, catalogue No. SI02654610, target sequence: CAG TGA CAT CTT TGT GTC CTA);
C: HP siRNA against human NOX1 (“siRNA NOX1”);
target sequence:
TABLE-US-00008 (SEQ ID NO: 6) CCG ACA AAT ACT ACT ACA CAA
D: siRNA against human iNOS2 (siiNOS) [0113] target sequence:
TABLE-US-00009 (SEQ ID NO: 7) CTG GGC CGT GCA AAC CTT CAA
[0114] For the control examinations represented in
TABLE-US-00010 (SEQ ID NO: 8) CCG GAT CTC ACT TGG CGG CAA
and siRNA against murine catalase (for 208F and 208Fsrc3 cells) [0117] HP Mm_Cat_4_HP siRNA, catalogue No. SI00941976 [0118] target sequence:
TABLE-US-00011 (SEQ ID NO: 9) CCC AAT AGG AGA TAA ACT TAA.
[0119] The transfection technique by means of the siRNAs is described in detail in Heinzelmann and Bauer, 2010 (loc.cit.). The transfection efficiency was more than 95%. 24 hours after the transfection control examinations for the respective gene functions were carried out that made sure that the “functional knockdown” was complete. This means that the specific siRNAs had effectively suppressed the De-Novo synthesis of the analyzed gene products and that the natural degradation of the concentration of the gene products before the administration of siRNA took place up to below the detection limit.
[0120] The human gastric carcinoma line MKN-45 was kept in RPMI 1640 medium, supplemented with 10% inactivated fetal bovine serum and 40 U/ml penicillin, 50 μg/ml streptomycin, g/ml neomycin, 10 U/ml Moronal (antimycotic antibiotic agent) and 280 μg/ml glutamine. The human neuroblastoma line SHEP as well as normal rat fibroblasts (208F) and their offspring transformed by the src oncogene (208Fsrc3) were kept in eagle's minimum essential medium (EMEM) supplemented with 5% inactivated fetal bovine serum and 40 U/ml penicillin, 50 μg/ml streptomycin, 10 μg/ml neomycin, 10 U/ml Moronal and 280 μg/ml glutamine. Details on the cell lines and their culture are found in the works of Heinzelmann and Bauer, 2010 and Bechtel and Bauer, 2009.
Example 3: Standard Preparation for the Analysis of the Autocrine ROS-Controlled Apoptosis Induction in Tumor Cells
[0121] The experiments shown in
[0122] Double preparations were examined at the times shown in the text by means of phase contrast reverse microscopy for the percentage of apoptotic cells. Here, the classical apoptosis criteria described and documented in Heinzelmann and Bauer 2010 such as condensation of the nucleus, fragmentation of the nucleus, and membrane blebbing were used. Per single preparation at least 250 randomly selected cells were examined for the presence of apoptosis features.
[0123] Parallel control examinations, as e.g. documented in the work of Bauer et al. (Bauer G, Bereswill S, Aichele P and Glocker E. Helicobacter pylori protects oncogenically transformed cells from reactive oxygen species-mediated intercellular induction of apoptosis, Carcinogenesis 35: 1582-1591, 2014, Supplement) made sure that the applied morphological criteria correlated with apoptosis criteria such as DNA fragmentation (measured by the TUNEL reaction) or positivity for annexin V binding.
Example 4: Specific Sensitization of Tumor Cells for Apoptosis-Inducing ROS Signaling by Single Domain VHH Fragments Against Catalase
[0124] In the scope of the present invention many trials have been carried out with the results of the trials having been summarized in
[0125]
[0126] MKN-45 cells under standard conditions for autocrine apoptosis induction were mixed with the given concentrations of single domain VHH fragments that bind to but do not inhibit human catalase (aCATcb0973, aCATcb0975) and single domain VHH fragments that bind to and inhibit human catalase (aCATcb0972; aCATcb9074) and were further incubated for 3.5 hours at 37° C., 5% CO.sub.2. In parallel under same conditions recombinant Fab fragments (consisting of a light and a heavy chain) were applied that are directed against and neutralize human catalase (Abd aCAT15562;
[0127]
[0128] The addition of single domain VHH fragments and classical Fab fragments inhibiting human catalase in the gastric carcinoma cell line MKN-45 results in the induction of apoptosis in the form of an optimum curve with respect to the concentration of the antibodies. The specificity of the induced process is made evident by the fact that single domain VHH fragments that bind to catalase but do not neutralize it do not result in an apoptosis induction (
Example 5: Effect of a Single Domain VHH Fragment Binding Catalase and Inhibition in Gastric Carcinoma Cells
[0129]
[0130] To standard preparations for the induction of apoptosis the given concentrations of the single domain VHH fragments aCATcb0972 were added in the presence of 100 μM of the NOX1 inhibitor AEBSF, 50 mM of the HOCI scavenger taurine (TAU), 25 μM of the peroxynitrite scavenger FeTPPS or 2 mM of the singlet oxygen scavenger histidine (HIS). Control preparations were carried out parallel without inhibitors. After 3.5 hours at 37° C., 5% CO.sub.2 the percentages of apoptotic cells were determined.
[0131]
[0132] That is,
[0135] Accordingly, it is a sole effect of H.sub.2O.sub.2 and not that of the specific ROS signal path.
[0136] Changing the optimum curve of the apoptosis induction into a plateau curve by the singlet oxygen scavenger histidine and the peroxynitrite scavenger FeTPPS indicates that at concentrations of the single domain VHH fragment aCATcb0872>0.75 pg/ml also singlet oxygen seems to play a role. Singlet oxygen can result from the reaction of H.sub.2O.sub.2 with peroxynitrite. Singlet oxygen is also known to be able to inactivate catalase. Then, the increased availability of H.sub.2O.sub.2 caused thereby can cause the side reactions {circle around (8)} and {circle around (9)} shown in
Example 6 Specific Sensitization of Tumor Cells for Apoptosis-Inducing ROS Signaling by Single Domain VHH Fragments Against SOD
[0137] The specific apoptosis induction in MKN-45 gastric carcinoma cells by single domain VHH fragments against SOD is shown in
[0138] MKN-45 cells under standard conditions for autocrine apoptosis induction were mixed with the given concentrations of single domain VHH fragments that bind to but do not inhibit human SOD1 (aSODcb0987, aSODcb0991) and single domain VHH fragments that bind to and inhibit human SOD (aSODcb0989) and were further incubated for 3.5 hours at 37° C., 5% CO.sub.2. In parallel under the same conditions recombinant Fab fragments (consisting of a light and a heavy chain) were applied that are directed against and neutralize human catalase (Abd aSOD15660;
[0139]
[0140] That is,
[0141]
[0142] To the standard preparations for the induction of apoptosis the given concentrations of the single domain VHH fragment aSODcb0989 were added in the presence of 100 μM of the NOX1 inhibitor AEBSF, 25 μM of the peroxynitrite scavenger FeTPPS, 50 mM of the HOCI scavenger taurine (TAU) or 2 mM of the singlet oxygen scavenger histidine (HIS). Control preparations were carried out parallel without inhibitors. After 3.5 hours at 37° C., 5% CO.sub.2 the percentages of apoptotic cells were determined.
[0143]
[0144] That is,
Example 7: Relationship Between Single Domain VHH Fragments and Target Cells
[0145]
[0146] Preparations for the induction of apoptosis in addition to the standard cell density (12500 cells/100 μl) were also prepared with a lower cell density (4000 cells/100 μl) and increasing concentrations of the single domain VHH fragments aCATcb0972 or aSODcb0989 and incubated for four hours at 37° C., 5% CO.sub.2. Thereafter, the percentages of apoptotic cells were determined.
[0147]
Example 8: Synergistic Effect of Single Domain VHH Fragments Against Catalase and SOD
[0148]
[0149] Standard preparations for the apoptosis induction with MKN-45 cells were mixed with increasing concentrations of the catalase-neutralizing single domain VHH fragment aCATcb0972 alone and in combination with 0.005 pg/ml of the SOD-neutralizing single domain VHH fragment aSODcb0989 or the single domain VHH fragment aSODcb0987 that binds to SOD but does not neutralize it (A). In the complementary experiment (B) mixing was done with increasing concentrations of aSODcb0989 alone or in combination with 0.005 pg/ml of the catalase-neutralizing single domain VHH fragment aCATcb0972. All preparations were incubated for 3.5 hours at 37° C., 5% CO.sub.2. Thereafter, the percentages of apoptotic cells were determined.
[0150]
[0151] That is,
Example 9: Synergistic Effect with Chemotherapeutic Agent
[0152]
[0153] Standard preparations for the apoptosis induction with MKN-45 cells were mixed with increasing concentrations of taxol alone or in combination with catalase-neutralizing aCATcb0972, SOD-neutralizing aSODcb0989 and SOD-binding but not neutralizing aSODcb0987 and incubated for 4 hours at 37° C., 5% CO.sub.2. Thereafter, the percentages of apoptotic cells were determined.
[0154]
[0155] Here, the optimum effect was found in the concentration range of 1100 ng/ml. This effect was to be expected. In combination with single domain VHH fragments that either could inhibit catalase or SOD the taxol-dependent optimum curve surprisingly was drastically displaced to a lower concentration range. Now, the optimum of the effect was between 0.17 ng/ml and 0.5 ng/ml. This impressive displacement of the required concentration to less than a thousandth could only be achieved by single domain VHH fragments that also neutralize the respective target structure (catalase or SOD), while a mere bond did not cause any enhancing effect.
[0156] The effect shown in
Example 10: Specific Sensitization of Tumor Cells for Apoptosis-Inducing ROS Signaling by Hybrid Molecules from Catalase- or SOD-Neutralizing Single Domain VHH Fragments
[0157]
[0158] Standard preparation for the apoptosis induction with MKN-45 cells were mixed with increasing concentrations of catalase-neutralizing aCATcb0972, SOD-neutralizing aSODcb0989, the hybrid molecules from aCATcb0972 and aSODcb0989 in the two possible arrangements as well as a neutralizing conventional monoclonal antibody against catalase (Sigma) as a control and incubated for 3.5 hours at 37° C., 5% CO.sub.2. Thereafter, the percentages of apoptotic cells were determined.
[0159]
[0160] That is,
Example 11
[0163]
[0164] To standard preparations for the induction of the apoptosis there were added the given concentrations of the hybrid molecule aCATaSOD in the presence of 100 μM of the NOX1 inhibitor AEBSF, 25 μM of the peroxynitrite scavenger FeTPPS, 50 mM of the HOCI scavenger taurine (TAU) or 2 mM of the singlet oxygen scavenger histidine (HIS). Control preparations were carried out parallel without inhibitors. After 3 hours at 37° C., 5% CO.sub.2 the percentages of apoptotic cells were determined.
[0165]
Example 12
[0166]
[0167] MKN-45 cells were transfected with 24 nM siRNA that was directed against NOX1, iNOS2, caspase-9, FAS receptor or caspase-8. Control preparations were transfected with irrelevant control siRNA. After 24 hours at 37° C. the cells were taken up in fresh medium and mixed with the given concentrations of the hybrid molecule aCATaSOD. The percentage of apoptotic cells is determined after four hours.
[0168]
[0169] From
TABLE-US-00012 TABLE 1 relation to opt. optimum conc. single domain relation Antibody conc. Fab (molar basis) aCAT cb0972 0.4 pg/ml (single domain VHH) AbD aCAT 15562 0.2 ng/ml 500 250 (recomb. Fab classical) monoclonal aCAT 111 ng/ml 277 500 46 250 (Sigma) aSOD cb0989 (single 1.2 pg/ml domain VHH) AbD aSOD 15660 0.3 ng/ml 250 125
TABLE-US-00013 TABLE 2 relation to opt. relation Antibody optimum conc. conc. hybrid Fab (molar basis) aCATaSOD 0.24 fg/ml (hybrid single dom. VHH) aCAT cb0972 0.17 pg/ml 708 1416 (single domain VHH) monoclonal aCAT 111 ng/ml 4.6 × 10.sup.8 1.54 × 10.sup.8 (Sigma) aSOD cb0989 0.35 pg/ml 1458 2916 (single domain VHH)
[0170] The values were taken from
Example 13: Effect of Single Domain VHH Fragments with Catalase- or SOD-neutralizing Effect on Human Tumor Cells that are Only Capable to Establish the NO/Peroxynitrite Path
[0171] While the human gastric carcinoma line MKN-45 used in the previous examples is characterized in that it can express the whole spectrum of the known intracellular ROS signaling (HOCI and NO/peroxynitrite path as main paths, nitryl chloride path as secondary path) when its membranous catalase is inhibited, in a series of other human tumor cell lines there is shown a limitation to the NO/peroxynitrite path (Heinzelmann and Bauer, 2010; Bauer, 2012). So, in the previous examinations it was found that a certain type of tumor each shows a uniform ROS signal system. A restriction to the NO/peroxynitrite signaling we so far only observed with neuroblastoma, Ewing's sarcoma, mammary carcinoma, ovarian carcinoma and small-cell lung carcinoma.
[0172]
[0173] 10 000 cells of the human neuroblastoma line SHEP per 100 μl medium were mixed with the given concentrations of the catalase-neutralizing single domain VHH fragment aCATcb0972, the SOD-neutralizing single domain VHH fragment aSOD0989, the SOD-binding but not neutralizing single domain VHH fragment aSODcb991 and the hybrid molecule aCATaSOD and incubated for 5 hours at 37° C., 5% CO.sub.2, before percentages of apoptotic cells were determined.
[0174]
[0175] That is,
[0176] The weak but significant apoptosis induction that is achieved by the single domain VHH fragment aSODcb0991 that can only bind but not neutralize can be explained best by the fact that after bonding of the single domain VHH fragment there is an internalization of the SOD and thus, its concentration on the surface is reduced, what should result in an effect analogous to the inhibition.
[0177]
[0178] 10 000 cells of the human neuroblastoma line SHEP per 100 μl medium were mixed with the given concentrations of the SOD-neutralizing single domain VHH fragment aSOD0989. Parallel preparations received 20 μM or 100 μM of the NO donor sodium nitroprusside or were incubated without a further additive. After 5 hours at 37° C., 5% CO.sub.2 the percentages of apoptotic cells were determined.
[0179]
Example 14: Single Domain VHH Fragments Exclusively Inhibit Membranous Catalase (that is Characteristic and Essential for Tumor Cells) and do not Achieve Intracellular Catalase (that Also Plays a Role in Normal Cells)
[0180]
[0181] 6000 non-transformed 208F cells, transformed 208Fsrc3 cells, and MKN-45 tumor cells, respectively, each were seeded in 100 μl medium and mixed with 0.1 or 1 pg/ml catalase-neutralizing aCATcb0972 or only catalase-binding aCATcb0973. Control preparations were left without single domain VHH fragments. Subsequently, the indicated concentrations of glucose oxidase were added and apoptosis induction was measured after 1.5 hours. Glucose oxidase (GOX) generates H.sub.2O.sub.2 which is cell-permeable and thus, can be degraded both by intracellular and membranous catalase. At a sufficient concentration H.sub.2O.sub.2 induces apoptosis without selectivity with respect to the malignant status of cells (Ivanovas et al., Selective and nonselective apoptosis induction in transformed and nontransformed fibroblasts by exogenous reactive oxygen and nitrogen species. Anticancer Research, Anticancer Res. 22:841-856, 2002).
[0182]
[0183]
[0184] With this control aspect is dealt in
[0185]
[0186] Normal cells (208F), transformed cells (208Fsrc3) and tumor cells (MKN-45) were transfected with control siRNA (siCo) and siRNA against catalase (siCAT) and kept for 24 hours at 37° C. and 5% CO.sub.2. Thereafter, the cells were taken up into fresh medium and taken up in a cell density of 6000 cells/100 μl medium. Subsequently, the preparations were treated either with increasing concentrations of GOX (27A-27C) or peroxynitrite (PON) (27D-27F). After 1.5 hours of incubation and 37° C. and 5% CO.sub.2 the percentages of apoptotic cells were determined. To assess this experiment, it has to be recapitulated that GOX generates H.sub.2O.sub.2 that has a very good cell-permeability and thus, can be degraded both by membranous and intracellular catalase. On the other hand, exogenously added peroxynitrite reacts with the cell membrane when it contacts the cell. Thus, protection from the effect of peroxynitrite can only be achieved by catalase sitting on the outside of the membrane.
[0187] At first,
Example 15: The In Vitro Effect Shown for Single Domain VHH Fragments Correlates with an Inhibition of the Tumor Growth In Vivo
[0188]
[0189] The experiments carried out in
[0190] At first,