Devices, Methods, And Compositions For Restricting Cell Position And Stabilizing Cells In Culture Systems

Abstract

A device is directed to simulating a function of a tissue, and includes a first structure defining a first chamber, a second structure defining a second chamber, and a porous membrane located at an interface region between the first chamber and the second chamber. The membrane has a first side facing toward the first chamber and a second side facing toward the second chamber, the membrane separating the first chamber from the second chamber. The first side includes a fluid-permeable, stimulus-responsive polymer gel thereon, the second side including at least one layer of cells adhered thereon.

Claims

1-24. (canceled)

25. A method of preventing cell differentiation, comprising: a) seeding viable cells on to a surface of a device under conditions such that at least a portion adheres thereon; and b) introducing a stimulus-responsive polymer gel on top of the cells under conditions such that differentiation of the cells is prevented and the cells remain viable.

26-31. (canceled)

32. The method of claim 25, wherein the cells are airway epithelial cells and the gel blocks the cells from air exposure, thereby preventing differentiation of the airway epithelial cells.

33. The method of claim 32, further comprising c) removing the gel so that the cells are not prevented from differentiating.

34. A method of preserving cells for storage or shipment, comprising: a) seeding viable cells on to a surface of a device under conditions such that at least a portion adhere thereon; and b) introducing a stimulus-responsive polymer gel on top of the cells under conditions such the adhered cells remain viable, thereby preserving the cells.

35. The method of claim 34, further comprising c) shipping the cells.

36. The method of claim 34, further comprising c) storing the cells.

37-41. (canceled)

42. The method of claim 34, further comprising c) removing the gel so that the cells are not covered by the gel.

43. (canceled)

44. A method for restricting the position of cells in a microfluidic device, the device including a first region and a second region, the method comprising: polymerizing a biopolymer material in the first region; seeding cells such that they attach to the second region but are prevented from attaching to the first region by the polymerized material; and after the seeding, depolymerizing and removing the biopolymer material from the first region.

45. The method of claim 44, wherein the first region and second region are separated by a porous membrane, the porous membrane having top and bottom surfaces.

46. The method of claim 45, further comprising imaging cell migration across the porous membrane.

47. The method of claim 44, wherein the depolymerizing is in response to applying an external stimulus.

48-57. (canceled)

58. A method for restricting the position of cells in a microfluidic device, the device including a first compartment and a second compartment separated by a porous membrane, wherein said porous membrane permits the passage of at least a first cell type, the method comprising: a) forming a gel in the first compartment or portion thereof so as to block the passage of cells of said first type through at least a portion of said membrane; and b) seeding cells of the said first cell type in a region of the second compartments; and c) removing the gel from the microfluidic device.

59. The method of claim 58, further comprising d) culturing said cells.

60. The method of claim 59, wherein the gel is removed by a method comprising depolymerizing the gel in response to applying an external stimulus.

61. The method of claim 60, wherein the external stimulus is one or more of a temperature application, a light application, a pH application, an enzyme application and a small molecule application.

62. The method of claim 58, wherein the forming of the gel in step a) includes polymerizing a biopolymer material.

63-66. (canceled)

67. The method of claim 58, wherein the microfluidic device is an organ-on-chip device or a Transwell device.

68. The method of claim 58, wherein the microfluidic device further includes ports in fluid communication with the first and second compartments and the seeding comprises introducing cells into the ports in a flow of culture media.

69. A method for restricting the position of cells in a microfluidic device, the device including a porous membrane, the porous membrane including i) pores and ii) first and second sides, the method comprising: a) forming a gel in the first or second side of the membrane, or portion thereof; and b) seeding cells on a region of the membrane on the side opposite to the side comprising the gel under conditions such that the cells are prevented by the gel from moving through the pores, thereby restricting the position of the cells in the microfluidic device.

70. The method of claim 69, further comprising c) removing the gel from the microfluidic device.

71-74. (canceled)

Description

BRIEF DESCRIPTION OF THE DRAWINGS

[0082] FIG. 1A is an exploded perspective view illustrating a device for simulating a function of a tissue, in accordance with one embodiment.

[0083] FIG. 1B is an assembled perspective view of the device shown in FIG. 1A.

[0084] FIG. 2A is a perspective view illustrating a device for simulating a function of a tissue, in accordance with another embodiment.

[0085] FIG. 2B shows the device of FIG. 2A with a biopolymer-filled bottom microchannel.

[0086] FIG. 2C shows the device of FIG. 2B with a cell-seeded top microchannel.

[0087] FIG. 2D shows the device of FIG. 2C with the biopolymer removed from the bottom microchannel.

[0088] FIG. 2E shows the device of FIG. 2D with a cell layer seeded in the bottom microchannel.

[0089] FIG. 3A shows a perspective view of an organ-on-chip (OOC) device, in accordance with yet another embodiment.

[0090] FIG. 3B shows an exploded perspective view of the OOC device of FIG. 3A.

[0091] FIG. 3C shows a cutaway perspective view with enlarged features of the OOC device of FIG. 3B.

[0092] FIG. 3D shows a cutaway side view with enlarged features of the OOC device of FIG. 3C.

[0093] FIG. 4 illustrates a system, in accordance with yet another embodiment, in which cells are seeded on top of a porous membrane.

[0094] FIG. 5 illustrates a system, in accordance with yet another embodiment, in which cells are submerged underneath a biopolymer.

[0095] FIG. 6A illustrates a TRANSWELL insert system, in accordance with yet another embodiment.

[0096] FIG. 6B illustrates a biopolymer inserted in a bottom compartment of the system of FIG. 6A.

[0097] FIG. 6C illustrates cells seeded in a top compartment of the system of FIG. 6A.

[0098] FIG. 7A illustrates a TRANSWELL insert system, in accordance with yet another embodiment.

[0099] FIG. 7B illustrates a biopolymer inserted in a top compartment of the system of FIG. 7A.

[0100] FIG. 7C illustrates cells seeded in a bottom compartment of the system of FIG. 7A.

[0101] FIG. 7D illustrates the biopolymer removed from the top compartment of the system of FIG. 7A.

[0102] FIG. 7E illustrates another cell type added to the top compartment of the system of FIG. 7A.

[0103] FIG. 7F illustrates a migration assay in the system of FIG. 7A.

[0104] FIG. 8 shows a timeline illustrating effects of delaying differentiation of cells.

[0105] FIG. 9A shows a microscopic image of epithelial morphology in a sample without polymer exposure.

[0106] FIG. 9B shows a microscopic image of epithelial morphology in a sample with polymer exposure.

[0107] While the invention is susceptible to various modifications and alternative forms, specific embodiments have been shown by way of example in the drawings and will be described in detail herein. It should be understood, however, that the invention is not intended to be limited to the particular forms disclosed. Rather, the invention is to cover all modifications, equivalents, and alternatives falling within the spirit and scope of the invention as defined by the appended claims.

DETAILED DESCRIPTION

[0108] While this invention is susceptible of embodiment in many different forms, there is shown in the drawings and will herein be described in detail preferred embodiments of the invention with the understanding that the present disclosure is to be considered as an exemplification of the principles of the invention and is not intended to limit the broad aspect of the invention to the embodiments illustrated. For purposes of the present detailed description, the singular includes the plural and vice versa (unless specifically disclaimed); the words and and or shall be both conjunctive and disjunctive; the word all means any and all; the word any means any and all; and the word including means including without limitation.

Definitions

[0109] The term microfluidic as used herein relates to components where moving fluid is constrained in or directed through one or more chambers or channels wherein one or more dimensions are 1 millimeter (mm) or smaller (microscale). Microfluidic channels may be larger than microscale in one or more directions, though the channel(s) will be on the microscale in at least one direction. In some instances, the geometry of a microfluidic channel may be configured to control the fluid flow rate through the channel (e.g. increase channel height to reduce shear). Microfluidic channels can be formed of various geometries to facilitate a wide range of flow rates through the channels. Microfluidic devices include (but are not limited to) organ-on-chip devices and Transwell devices.

[0110] Channels are pathways (whether straight, curved, single, multiple, in a network, etc.) through a medium (e.g., silicon) that allow for movement of liquids and gasses. Channels, thus, can connect other components, i.e., keep components in communication and more particularly, in fluidic communication, and still more particularly, in liquid communication. Such components include, but are not limited to, liquid-intake ports and gas vents. Microchannels are channels with dimensions less than 1 mm and greater than 1 micron.

[0111] As used herein, the phrases connected to, coupled to, in contact with and in communication with refer to any form of interaction between two or more entities, including mechanical, electrical, magnetic, electromagnetic, fluidic, and thermal interaction. For example, in one embodiment, channels in a microfluidic device are in fluidic communication with cells and (optionally) a fluid source such as a fluid reservoir. Two components may be coupled to each other even though they are not in direct contact with each other. For example, two components may be coupled to each other through an intermediate component (e.g., tubing or other conduit).

[0112] Generally, according to one feature described below, undesirable cell migration is prevented when the migration occurs through a membrane with a pore size greater than 1 m in diameter and when cells (such as endothelial cells) are cultured thereon in a microfluidic device, such as an organ-on-chip (OOC) device. To prevent cells from a first microchannel invading a second opposite microchannel, and, thus, interfering with plating or growth of tissue-specific cells in the second opposite microchannel, an approach includes seeding cells in the first microchannel of a microfluidic cell culture device (e.g., the OOC device) while the second opposite microchannel has a stimulus-responsive biocompatible polymer. Upon exposure to a first stimulus, the biocompatible polymer forms a gel to prevent cell invasion. The gel is readily dissolved or removed upon exposure to a second stimulus, when it is desired to plate another cell type in the second opposite microchannel. According to some examples, the gel includes a collagen type of gel, a water impermeable type of gel, and/or other types of gels.

[0113] Referring to FIGS. 1A and 1B, an exemplary of a microfluidic device 100 is in the form of an OOC device that includes a top slab 102 separated from a bottom slab 104 by a porous membrane 106. The top slab 102 defines a first chamber 108 (which is illustrated in the form of a top microchannel), and the second slab 104 defines a second chamber 110 (which is illustrated in the form of a bottom microchannel). The porous membrane 106 is located at an interface region between the first chamber 108 and the second chamber 110, separating the two chambers 108, 110, and has a first side 112 facing toward the first chamber 108 and a second side 114 facing toward the second chamber 110. A first fluid inlet 116 is provided for fluid flow into the top microchannel 108, and a second fluid inlet 118 is provided for fluid flow into the bottom microchannel 110.

[0114] Referring generally to FIGS. 2A-2E, the culturing and prevention of undesirable cell migration is achieved, for example, in micro-, meso-, and/or macro-fluidic settings. Initially, in reference to FIG. 2A, the microfluidic device 100 is provided with the top and bottom microchannels 108, 110 empty (e.g., lacking any fluids, cultured cells, or gels). Then, in reference to FIG. 2B, the bottom microchannel 110 is temporally or temporarily filled with a biocompatible polymer gel 120 to prevent cell invasion. Referring to FIG. 2C, the top microchannel 108 is seeded with one or more cell layers 122. Referring to FIG. 2D, the polymer gel 120 is removed from the bottom microchannel 110. According to one example, the polymer gel 120 is removed with enzymes. The removal of the polymer gel 120 typically occurs when a user desires to plant another cell type in the bottom microchannel 110. Then, referring to FIG. 2E, the bottom microchannel 110 is seeded with one or more cell layers 124 (e.g., a blood-brain barrier or epithelial-endothelial co-culture systems).

[0115] Referring generally to FIGS. 3A-3D, another exemplary embodiment is directed to an OOC device 200 that includes a body 201 with an upper body segment 202 and a lower body segment 204. The upper body segment 202 and the lower body segment 204 are preferably made of a polymeric material, such as PDMS, PMMA, polycarbonate, COP/CoC, polyurethane, or SBS/SEBS.

[0116] Referring specifically to FIGS. 3B and 3C, the OOC device 200 includes a porous membrane 206 that is located at an interface region between the upper body segment 202 and the lower body segment 204, separating a top microchannel 208 from a bottom microchannel 210. The membrane 206 has a first side 212 facing toward the top microchannel 208 and a second side 214 facing toward the bottom microchannel 210. A first fluid inlet 216 is provided for fluid flow into the top microchannel 208, and a second fluid inlet 218 is provided for fluid flow into the bottom microchannel 210.

[0117] Referring specifically to FIG. 3B, a first fluid outlet 217 is provided for fluid flow exiting the top microchannel 208, and a second fluid outlet 219 is provided for fluid flow exiting the bottom microchannel 210. Optionally, the OOC device 200 includes one or more additional top and bottom microchannels, such as cross-flow microchannels 221, 222, with respective third fluid inlet and outlet 223, 224.

[0118] Referring specifically to FIG. 3C, the membrane 206 includes a plurality of pores 226 through which cells are able to migrate between the top microchannel 208 and the bottom microchannel 210. The size of the pores 226 is selected in accordance with achieving a desired migration, simulating a specific function in vitro.

[0119] Referring specifically to FIG. 3D, the top microchannel 208 is filled at least in part with a biocompatible polymer gel 220, which is attached to the top surface 212 of the membrane 206. The bottom microchannel 210 includes a cell layer 222, which is seeded onto the bottom surface 214 of the membrane 206. While the polymer gel 220 is in place on the top surface 221 of the membrane 206, the polymer gel 220 prevents undesired or inadvertent migration of cells 222 from the bottom microchannel 210 into the top microchannel 208. When migration of cells 222 is desired, the polymer gel 220 is removed at least in part from the top microchannel 208.

[0120] Referring generally to FIGS. 4 and 5, cells seeded on top of a porous membrane are submerged underneath a polymer gel (i.e., in the same microchannel as the cultured cells), according to an alternative embodiment. In specific reference to FIG. 4, a microfluidic device 300 includes a top microchannel 308, a porous membrane 306, and a bottom microchannel 310. Optionally, the microfluidic device 300, including one or more of its features, is similar to or identical to the microfluidic device 100 illustrated in FIGS. 1A and 1B. According to another optional embodiment, the microfluidic device 300 includes one or more features of a TRANSWELL insert system 309, for a static cell culture.

[0121] The microfluidic device 300 includes primary human airway epithelial cells 322 that are seeded on top of the porous membrane 306, within the top microchannel 308. Additionally, the microfluidic device 300 includes a cell culture medium 323 in the bottom microchannel 310. Referring specifically to FIG. 5, the cells 322 are submerged underneath underneath a biopolymer gel 320. The cells 322 are kept submerged under the polymer without disrupting cell monolayer quality and the cell ability to differentiate in vitro. This aspect is helpful in serving at least two purposes: (1) to delay differentiation of desired cell type, and (2) to preserve and stabilize live cell layers 322 submerged under biopolymer gel 320 for shipment of OOC devices or for reducing the total amount of medium required. Thus, the microfluidic device 300 is beneficial in stabilizing cell cultures or replacing cell culture medium in cell-containing platforms for maintenance or shipment from one location to another. For example, by filling a microchannel with a biopolymer gel 320, the total amount of cell culture medium required is reduced.

[0122] Referring generally to FIGS. 6A-6C, an exemplary method is illustrated in which cells are seed in a top compartment and a biopolymer gel is polymerized in a bottom compartment. Referring specifically to FIG. 6A, a microfluidic device 400 includes similar or identical features to the TRANSWELL insert system 309 illustrated in FIGS. 4 and 5. By way of example, the microfluidic device 400 includes a top compartment 408 (e.g., an insert), a porous membrane 406, and a bottom compartment 410 (e.g., a well). Referring specifically to FIG. 6B, a biopolymer gel 420 is polymerized in the bottom compartment 410. Referring specifically to FIG. 6C, cells 422 are seeded on top of the membrane 406, in the top compartment 408. This approach is useful, for example, for assays such as immune cell chemotaxis assays in which a single endothelial layer is required on large-pore (e.g. 3-8 m) membrane.

[0123] According to one feature, the microfluidic device 400 and the biopolymer gel 420 (e.g., filter-sterilized biocompatible polymer) are incubated under a condition that maintains the biopolymer gel 420 in a liquid form. For example, the microfluidic device and a biocompatible polymer Pluronic F127 are incubated at about 4 C. for about 30 minutes. The procedure is performed while the top compartment 408 (reserved for cell seeding) is clamped or blocked on both ends to prevent polymer leak. This step is carried out quickly, and, then, the polymer-filled microdevice is placed at a temperature selected for allowing the polymer to gel. For example, assuming that Pluronic F127 is the selected biocompatible polymer, the polymer-filled microdevice is placed in a 37 C. incubator for about 15 min to allow the biopolymer gel 420 to transition from liquid form to gel form. Meanwhile, a suspension of cells 422, e.g., endothelial cells such as human umbilical vein endothelial cells (HUVECs), is prepared at a desired concentration, with the cells 422 being added quickly to the top compartment 408 and allowed to adhere overnight. A culture medium of the cell-seeded compartment 408 is replaced with a fresh medium, e.g., by connecting the microfluidic device 400 to microfluidic flow. The microfluidic device 400 is continuously monitored for any sign of cell escape into the polymer-filled compartment 410.

[0124] Referring generally to FIGS. 7A-7F, another exemplary method is illustrated in which a first type of cells migrates between compartments of a microfluidic device towards a second type of cells. Referring specifically to FIG. 7A, a microfluidic device 500 includes similar or identical features to the TRANSWELL insert system 309 illustrated in FIGS. 4 and 5. By way of example, the microfluidic device 500 includes a top compartment 508, a porous membrane 506, and a bottom compartment 510. Referring specifically to FIG. 7B, a biopolymer gel 520 is polymerized in the top compartment 508. Referring specifically to FIG. 7C, a first type of cells 522 is seeded on the undersurface of the membrane 506, in the bottom compartment 510. Referring specifically to FIG. 7D, the biopolymer gel 520 is depolymerized and removed from the top compartment 508. Referring specifically to FIG. 7E, a second type of cells 525 is added to the top compartment 508. Referring specifically to FIG. 7F, a migration assay is performed to analyze (e.g., image) migration of one or more cells 523 of the first type of cells 522 that migrate through the membrane 506, from the bottom compartment 510 to the top compartment 508.

[0125] Referring to FIG. 8, a timeline illustrates delaying differentiation of cells in vitro without causing adverse effects on cell behavior and/or quality. The delaying of the cellular differentiation is for a desired period of time, e.g., for a number of days or a number of hours. To hold back the differentiation process, for example, cells are fed with nutrients and kept alive through one side (e.g., basal side) while the other side of the cells (e.g., apical side) is exposed to the biopolymer gel. By way of example, air exposure is a known inducer of cellular differentiation for cells like airway epithelial cells. Additionally, submerging the cells apically with polymer delays differentiation as long as a user intends.

[0126] By way of example, a first set of epithelial cells (Set 1) serves as a control group of samples (e.g., confluent epithelial monolayers) that are not exposed to a biopolymer gel. The first set of epithelial cells are directly taken to an air-liquid interface (ALI) 24 days prior to the microscopic observation of cell monolayer and cilia beating. ALI is a key driver of airway epithelial cell differentiation into ciliated cells.

[0127] In a second set of epithelial cells (Set 2), which is exposed to a biopolymer gel, a replacement of an apical medium with the biopolymer gel is also performed 24 days prior to the microscopic observation. Confluent human airway epithelial cells are submerged under the biopolymer gel for 7 days within a microfluidic device (e.g., an OOC device as described above). After the replacement of the apical medium with the biopolymer gel, the ALI induction is performed, later, only 17 days prior to the microscopic observation. Thus, differentiation is achieved by removing the biopolymer gel and introducing air into the microchannel to form the ALI. As discussed below, no adverse effects re observed in cell behavior and/or quality between the first set of epithelial cells and the second set of epithelial cells.

[0128] Referring generally to FIGS. 9A and 9B, sample microscopic images illustrate similar results in both sets of epithelial cells discussed above in reference to FIG. 8. Referring specifically to FIG. 9A, a phase-contrast microscopic image shows the first set of cells, which has not been exposed to the biopolymer gel, on day 24 (post-ALI) with a nice cobblestone packed epithelial morphology. Referring specifically to FIG. 9B, a phase-contrast microscopic images shows the second set of cells, which has been exposed to the biopolymer gel, on day 17 (post-ALI) with a similar nice cobblestone packed epithelial morphology. Cilia beating (10 slowed down) was measured for both sets of cells, with good and comparable measures in both sets of cells.

[0129] Thus, the cells that are overlaid with the biopolymer gel not only have a normal cobblestone packed epithelial monolayer (by benchmarking against and similar to polymer-untreated cells), but also exhibit an ability to differentiate into ciliated epithelium. However, the cell differentiation is delayed compared to the control cultures by approximately the number of days that the cells are kept covered with the polymer and held in a suspended state. This indicates that the cells are stabilized biologically by the biopolymer gel described herein to avoid unwanted differentiation, or potentially de-differentiation, during transport or long-term tissue maintenance. In addition, the extremely high viscosity of the gelled polymer prevents shear-induced damage to the tissue during transport and handling. This aspect is beneficial at least for shipping organs, tissues, or cells in a microfluidic device when they can be cultured in a suspended state. Upon receipt of the microfluidic device, the user removes the polymer, adds medium (or air), and reboots the differentiation process necessary to complete a desired study.

[0130] Exemplary biocompatible polymer gels for use in reference to any of the gels discussed above, include, but are not limited to the following: [0131] Pluronic F127 (e.g., 25% w/v) and/or Pluronic F68, which both exhibit a reverse thermal gelling behavior, which gels at high temperatures (e.g., 20 C.) and melts at low temperatures (e.g., 4 C.); [0132] Poly(N-isopropylacrylamide) (PNIPAAm) polymer, which is modified to gel at about 37 C. and to contract at a higher or lower temperature to facilitate gel removal; and [0133] Alginates, which gels in the presence of calcium but dissolves when calcium chelators are added.

[0134] Pluronic F127 prevents endothelial cell escape and invasion into a second microchannel of an organ chip in an in vitro assay. Pluronic F127 is a triblock co-polymer that exhibits a reverse thermal gelling behavior in which, unlike most gels (e.g., agarose, gelatin, etc.), it solidifies at high temperatures (e.g., >20 C.) and melts at low temperatures (e.g., 4 C.). This behavior is applicable in many biomedical applications, such as areas of tissue engineering, drug delivery, and controlled compound release into tissue. Additional details regarding Pluronic F127 are described in Applications of Thermo-Reversible Pluronic F-127 Gels in Pharmaceutical Formulations, by J. J. Escobar-Chavez et al., published Nov. 27, 2006 (J. Pharm. Pharmaceut. Sci. 9 (3):339-358), which is incorporated herein by reference in its entirety. Pluronic F127 is also useful in other areas, such as 3D printing.

[0135] Pluronic F68 a similar behavior to Pluronic F127. Additional details regarding Pluronic F68 are described in Rheological Properties of Thermo-Responsive Microemulsion-based Gels Formed by Pluronic F68, by Zhao et al. (J. Chem. Pharm. Res., 2014, 6(7): 2067-2072), which is incorporated herein by reference in its entirety. Other polymers include any other polymer or materials with the ability to polymerize and depolymerize in a range of about 0-37 C. Such polymers or materials do not interfere with cell adhesion, growth, or differentiation (depending on the tested cell). Alternatively, the biocompatible polymer, according to some examples, is Pluronic F127 having 1-50% weight/volume (w/v), 15-30% w/v, or 25% w/v.

[0136] The PNIPAAm polymer provides the ability to be washed out of a microchannel of a microfluidic cell culture device (e.g., an organ chip) when cells (e.g., a different types of cells) are desired to be seeded in the microchannel. Alginates can also be used which can be gelled with calcium and dissolved with calcium chelators. Optionally, a low viscosity of the biocompatible polymer is at about 4 C. allows filling or emptying of very small microchannels and other features without affecting cells or devices due to pressure and shear. Optionally, yet, biocompatible polymers described herein are optically transparent and non-fluorescent in typical imaging wavelengths, unlike some other thermally-responsive gels (e.g. PNIPAAm).

[0137] According to one aspect, the stimulus responsive biocompatible polymer gels (which are not limited to thermally-responsive biocompatible polymer gels) are optionally or alternatively overlaid on top of a cultured cell monolayer. This approach, for example, delays initiation of a certain cell process (such as cell differentiation) until the organ chip is ready to use, and/or to protect submerged live cell layers from shear-induced damage during transport and handling.

[0138] By way of example, the biocompatible polymer gel is optionally selected from polymers that offer one or more of the following characteristics: (1) biocompatibility such that the biocompatible polymer gel does not interfere with culture, growth, and potentially differentiation of seeded cells; (2) the polymer gel does not readily leak into or block a cell-containing microchannel; and (3) the first microchannel is polymerized and de-polymerized using one or more stimuli that have minimal or no cytotoxicity or significant biological effects. For example, in reference to minimal biological effects, a change in temperature at an approximate range of 4-37 C. is typically well-tolerated by many cells, but a large change in pH can have detrimental impact on the cells and cause cytotoxicity or cellular stress.

[0139] According to yet another aspect, the biocompatible polymer gel is non-biodegradable. For example, the biocompatible polymer gel does not include any extracellular matrix proteins that degrade by cells or that affect cell growth and/or functions.

[0140] According to yet another aspect, based on the polymer gel being of non-rigid form, a device is used for mechanical actuation or stimulation of the tissue without affecting the blocking polymer gel. Optionally, cell-compatible reversal and polymer removal processes avoid harsh chemical, ultraviolet (UV), and/or thermal treatments. The methods described herein are simple, fast, and sterile process-compatible methods. Optionally, yet, in addition to or instead of restricting cell position for a desirable period of time, biocompatible polymers can also be utilized to stabilize cell cultures in culture devices. For example, biocompatible polymers protect cells against movement-induced fluid shear forces and/or minimize the total amount of medium requirements. The protection and/or minimization features are beneficial for shipping or storage of tissues, organs, or cells in a microfluidic cell culture device (e.g., an organ chip) in a way that optimizes the respective structure and function.

[0141] According to yet another aspect, the biocompatible polymer transitions between liquid and gel states at about 25 C. for 25% w/v solutions. This biocompatible polymer enables removal at a cell-compatible temperature, such as 4 C. The biocompatible polymer is also optically clear and is non-autofluorescent, allowing the biocompatible polymer to be used without interfering with imaging applications. The biocompatible polymer does not prevent or negatively influence cell attachment and growth in a culture. For example, a monolayer becomes evident on day two of post seeding in a gel-free microchannel. The cell layer morphology is comparable to the morphology in chips that are seeded without polymer in the opposite microchannel. Importantly, no cell escape occurs to the unseeded microchannel.

[0142] In alternative embodiments, the biocompatible polymer undergoes polymerization-de-polymerization via a method other than one having a temperature change, as long as the method does not affect cell viability. Optionally or alternatively, any human and non-human (eukaryotic and prokaryotic) cell types, including but not limited to any human organ endothelial cells, epithelial cells, neurons, and/or immune cells, are used in reference to the microfluidic devices and methods described above.

[0143] In yet other alternative embodiments, the methods described herein are applied to cell patterning in general, using a polymer as a sacrificial barrier for a number of other applications, including 3D printing of tissues, cell co-culture, etc. Patterning, for example, is performed by filling microchannels, voids, or other geometric features, using stamping, printing, injection, spraying, or other methods for depositing materials in defined regions or patterns. In some applications, a reverse thermal gel polymer for controlling cell patterning. At least one microchannel of a cell culture microfluidic device is robustly blocked with an inert, stable, and biocompatible polymer.

[0144] In yet other alternative embodiments, the methods and devices described herein employ a biocompatible polymer that is modified with cell repulsing factors (which are not limited to semaphorins), cell anti-adhesion or adhesion moieties, growth factors, peptides, or any other molecule or multiple molecules. Optionally or alternatively, biocompatible polymer gels formed in a cell-unseeded microchannel contain agents and/or molecules, such as drugs, growth factors, and proteins for a controlled release. In further optional or alternative embodiments, a polymer-filled microchannel is washed and cellularized.

[0145] In yet other alternative embodiments, the methods and devices described herein are used for immune cell migration assays through an endothelial monolayer. For example, the endothelial monolayer is a bone marrow on a chip, a blood bone marrow barrier on a chip, or a lymph node on a chip. Optionally or alternatively, the methods described herein are automated or performed manually and/or are used with automated or manual OOC devices.

[0146] In yet other applications, a method is directed to visualizing cells at different locations of a cell culture device. For example, a biocompatible polymer gel is used to potentially change a refractive index to more easily visualize different cell layers in bi-, tri-, multi-cell co-culture systems. In another example, addition of a polymer gel to a top microchannel of a microfluidic culture allows imaging of a lower microchannel cell layer due to refractive index matching of the polymer and top cell layer.

[0147] Each of these embodiments and obvious variations thereof is contemplated as falling within the spirit and scope of the claimed invention, which is set forth in the following claims. Moreover, the present concepts expressly include any and all combinations and subcombinations of the preceding elements and aspects.