COMPOSITIONS AND METHODS FOR PREPARING CD34NEG STEM CELLS FOR TRANSPLANT
20200199533 ยท 2020-06-25
Inventors
Cpc classification
A61K35/28
HUMAN NECESSITIES
C12N5/0647
CHEMISTRY; METALLURGY
International classification
Abstract
It has been discovered that CD34.sup.neg cells, for example HSPCs, can be modified to increase their ability to migrate and to engraft in bone marrow. One embodiment provides a method for modifying CD34.sup.neg cells by using glycosyltransferase-programmed stereosubstitution (GPS) to create relevant selectin-binding glycan determinants on the cell surface. For example, the CD34.sup.neg cells can be treated with a fucosyltransferase, such as an (1,3)-linkage-specific fucosyltransferase. Representative enzymes that can be used include, but are not limited to fucosyltransferase VI (FTVI or FucT-6) or fucosyltransferase VII (FTVII of FucT-7). These enzymes specifically places a fucose onto a terminal type 2-lactosamine unit; if that lactosamine is capped with an (2,3)-linked sialic acid, sLe.sup.x is created.
Claims
1. A CD34.sup.neg stem or hematopoietic progenitor cell comprising glycoproteins, glycolipids, or a combination thereof, modified to have sLe.sup.x structures.
2. The stem cell of claim 1, wherein the stem cell is a hematopoietic stem cell.
3. The cell of claim 1, wherein the cell is a CD34.sup.neg hematopoietic progenitor cell comprising glycoproteins, glycolipids, or a combination thereof, wherein the cell is modified to have sLe.sup.x structures.
4. The cell of claim 1, wherein the cell is treated with an -(1,3)-fucosyltransferase to form the sLe.sup.x structures.
5. The cell of claim 4, wherein the -(1,3)-fucosyltransferase is FT-VI or FT-VII.
6. A pharmaceutical composition comprising the CD34.sup.neg cell of claim 1.
7. A method for improving engraftment of CD34.sup.neg cells comprising: contacting the CD34.sup.neg cells with an effective amount of a glycosyltransferase to form sLe.sup.x structures on glycoproteins, glycolipids, or a combination thereof, of the CD34.sup.neg cells.
8. The method of claim 5, wherein the stem cells are hematopoietic stem cells or hematopoietic precursor cells.
9. The method of claim 7, wherein the glycosyltransferase is an -(1,3)-fucosyltransferase.
10. The method of claim 9, wherein the -(1,3)-fucosyltransferase is FT-VI or FT-VII.
11. A method for increasing hematopoietic cell production in a subject in need thereof, comprising administering the cells of claim 1.
12. The method of claim 11, wherein the subject has undergone chemotherapy or radiation therapy.
13. The method of claim 11, wherein the subject has cancer.
14. The method of claim 13, wherein the cancer is a hematological cancer.
15. The method of claim 11, wherein the subject has a chronic infection.
16. A method for detecting acute myeloid leukemia (AML) cells comprising assaying a sample of hematopoietic cells to detect the presence or absence of a non-EseIL reactive form of CD34, wherein the presence of a non-EseIL reactive form of CD34 is indicative of the presence of AML cells.
17. The method of claim 16 wherein the hematopoietic cells do not contain CD34.sup.neg cells.
18. The method of claim 16, wherein the hematopoietic cells are from a bone marrow sample.
19. The cells of claim 1, wherein the cells are autologous.
20. A method for increasing hematopoietic cell production in a subject in need thereof, comprising administering the composition of claim 6.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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[0019]
[0020]
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[0022]
DETAILED DESCRIPTION OF THE INVENTION
I. Definitions
[0023] The term HPSCs refers to hematopoietic stem/progenitor cells, preferably human cells.
[0024] The term HSC refers to hematopoietic stem cell. HSC are self-renewing and produce HPCs.
[0025] The term HPC refers to hematopoietic progenitor cell. HPCs can differentiate into every type of mature blood cell within a well-defined hierarchy.
II. Modified HSPC Cells
[0026] One embodiment provides CD34.sup.neg cells, for example HSPCs, modified to have one or more sLe.sup.x features to promote engraftment of the cells into bone marrow. CD34.sup.neg cells can be modified to have one or more sLe.sup.x features by using glycosyltransferase-programmed stereosubstitution (GPS) to create relevant selectin-binding glycan determinants on the cell surface. For example, the CD34.sup.neg cells can be treated with a fucosyltransferase, such as an (1,3)-linkage-specific fucosyltransferase. Representative enzymes that can be used include, but are not limited to fucosyltransferase VI (FTVI or FucT-6) or fucosyltransferase VII (FTVII of FucT-7). These enzymes specifically place a fucose onto a terminal type 2-lactosamine unit; if that lactosamine is capped with an (2,3)-linked sialic acid, sLe.sup.x is created. The sLe.sup.x features can be on a polysaccharide, glycoprotein, glycolipid, or a combination thereof. The CD34.sup.neg cell can be hematopoietic stem cell, a hematopoietic progenitor cell, or a combination thereof.
[0027] A. CD34
[0028] For almost 30 years, the cell-surface sialomucin CD34 has been used as a marker to identify and enrich HSPCs in preparation for bone marrow transplantation, Berenson R, Andrews R, Bensinger W, et al. Antigen CD34+ marrow cells engraft lethally irradiated baboons. Journal of Clinical Investigation. 1988; 81(3):951. However, recent studies have revealed that the CD34.sup.neg fraction of normal human bone marrow is capable of differentiating into CD34.sup.pos subsets that possess a more activated phenotype than was expected, Gotze K S, Schiemann M, Marz S, et al. CD133-enriched CD34() (CD33/CD38/CD71)() cord blood cells acquire CD34 prior to cell division and hematopoietic activity is exclusively associated with CD34 expression. Exp Hematol. 2007; 35(9):1408-1414; Dooley D C, Oppenlander B K, Xiao M. Analysis of primitive CD34- and CD34+ hematopoietic cells from adults: gain and loss of CD34 antigen by undifferentiated cells are closely linked to proliferative status in culture. Stem Cells. 2004; 22(4):556-569; and Nakamura Y, Ando K, Chargui J, et al. Ex vivo generation of CD34(+) cells from CD34() hematopoietic cells. Blood. 1999; 94(12):4053-4059. For example, one major difference that surfaced between these subsets is that the CD34.sup.neg fraction suffers from a profound impairment in migration after intravenous transplantation compared to the CD34.sup.pos fraction, Dooley D C, Oppenlander B K, Xiao M. Analysis of primitive CD34- and CD34+hematopoietic cells from adults: gain and loss of CD34 antigen by undifferentiated cells are closely linked to proliferative status in culture. Stem Cells. 2004; 22(4):556-569; Sato T, Laver J H, Ogawa M. Reversible expression of CD34 by murine hematopoietic stem cells. Blood. 1999; 94(8):2548-2554; Dao M A, Arevalo J, Nolta J A. Reversibility of CD34 expression on human hematopoietic stem cells that retain the capacity for secondary reconstitution. Blood. 2003; 101(1):112-118; Nielsen J S, McNagny K M. Influence of host irradiation on long-term engraftment by CD34-deficient hematopoietic stem cells. Blood. 2007; 110(3):1076-1077; Sonoda Y. Immunophenotype and functional characteristics of human primitive CD34-negative hematopoietic stem cells: the significance of the intra-bone marrow injection. J Autoimmun. 2008; 30(3):136-144; Lemoli R M, Bertolini F, Petrucci M T, et al. Functional and kinetic characterization of granulocyte colony-stimulating factor-primed CD34-human stem cells. Br J Haematol. 2003; 123(4):720-729; Gao Z, Fackler M J, Leung W, et al. Human CD34+ cell preparations contain over 100-fold greater NOD/SCID mouse engrafting capacity than do CD34-cell preparations. Exp Hematol. 2001; 29(7):910-921; and Verfaillie C M, Almeida-Porada G, Wissink S, Zanjani E D. Kinetics of engraftment of CD34() and CD34(+) cells from mobilized blood differs from that of CD34() and CD34(+) cells from bone marrow. Exp Hematol. 2000; 28(9):1071-1079. The flow cytometric and Western blot data revealed a more pronounced E-selL activity on the CD34.sup.pos subset of the Lin.sup.neg CD38.sup.neg fraction than on the CD34.sup.neg subset. In agreement with these results, a previous study illustrated that bone marrow and fetal liver derived CD34.sup.pos subsets rolled over immobilized E-selectin with higher efficiency than CD34.sup.neg. Greenberg A W, Kerr W G, Hammer D A. Relationship between selectin-mediated rolling of hematopoietic stem and progenitor cells and progression in hematopoietic development. Blood. 2000; 95(2):478-486. Furthermore, microarray data analysis of CD34.sup.pos versus CD34.sup.neg subsets revealed exclusive expression of PSGL-1 and CD43 in the positive subset, suggesting that these ligands may be responsible for mediating interactions with E-selectin in this subset. Manfredini R, Zini R, Salati S, et al. The kinetic status of hematopoietic stem cell subpopulations underlies a differential expression of genes involved in self-renewal, commitment, and engraftment. Stem Cells. 2005; 23(4):496-506. Note that the lack of the HCELL glycoform found here indicates that the higher expression of CD44 in the CD34.sup.neg subset does not confer E-selectin binding activity, similar to that suggested previously. Dimitroff C J, Lee J Y, Rafii S, Fuhlbrigge R C, Sackstein R. CD44 is a major E-selectin ligand on human hematopoietic progenitor cells. J Cell Biol. 2001; 153(6):1277-1286.
[0029] Among several E-selL candidates suggested by MS analysis, CD34 surfaced as a novel and attractive ligand. CD34 is a heavily sialyated O-glycosylated type 1 transmembrane glycoprotein that is negatively charged and is speculated to behave in an anti-adhesive manner, much like its relative mucin CD43. Drew E, Merzaban J S, Seo W, Ziltener H J, McNagny K M. CD34 and CD43 inhibit mast cell adhesion and are required for optimal mast cell reconstitution. Immunity. 2005; 22(1):43-57; Ardman B, Sikorski M A, Staunton D E. CD43 interferes with T-lymphocyte adhesion. Proc Natl Acad Sci USA. 1992; 89(11):5001-5005; and Ohnishi H, Sasaki H, Nakamura Y, et al. Regulation of cell shape and adhesion by CD34. Cell Adh Migr. 2013; 7(5):426-433. Using a number of biochemical and functional assays, for the first time, evidence was provide that both vascular selectins (E- and P-selectin) bind CD34, similar to the other well-described E-selLs, CD44 (i.e. HCELL) and PSGL-1. However, unlike CD34, CD43 has been shown to contribute only modestly to the E-selectin interaction. Merzaban J S, Burdick M M, Gadhoum S Z, et al. Analysis of glycoprotein E-selectin ligands on human and mouse marrow cells enriched for hematopoietic stem/progenitor cells. Blood. 2011; 118(7):1774-1783.
[0030] B. Ligand Binding Affinities Expressed on Human HSPCs
[0031] The Examples document individual E-selL (CD34, CD44 and PSGL-1) binding affinities expressed on human HSPCs in its native form and show that all ligands display similar dissociation binding constants (K.sub.D) with slow on- and off-rate kinetics, with the exception of CD43. A blot-rolling assay confirmed that CD43 has a weaker binding K.sub.D by 1.8- to 2.0-fold due to the higher rate by which CD43 dissociates from E-Ig. Furthermore, CD34 was found to play a crucial role in slowing down the velocity of rolling cells at shear stresses 3 dyne/cm.sup.2. These data agree with previous studies that show expression of human CD34 in transgenic mouse thymocytes induces specific binding to human bone marrow endothelial cells compared to control thymocytes that do not express CD34. Healy L, May G, Gale K, Grosveld F, Greaves M, Enver T. The stem cell antigen CD34 functions as a regulator of hemopoietic cell adhesion. Proc Natl Acad Sci USA. 1995; 92(26):12240-12244.
[0032] C. Role of CD34 in Guiding HSPCs
[0033] The data in the Examples also show that CD34 ligation by E-selectin caused KG1a cell aggregation and CD34 clustering toward lipid rafts, as indicated by an enhanced CTB staining pattern and intensity following E-selectin treatment. A number of studies have suggested that prior to activation, CD34 is homogeneously distributed over the entire cell surface of HSPCs. However, following activation of these cells (via fibronectin or ligation using anti-CD34 antibodies), CD34 redistributes to lipid rafts and in some cases is even polarized toward the uropod, suggesting a role in enhanced homotypic adhesion. Wagner W, Saffrich R, Wirkner U, et al. Hematopoietic progenitor cells and cellular microenvironment: behavioral and molecular changes upon interaction. Stem Cells. 2005; 23(8):1180-1191; Hu M C, Chien S L. The cytoplasmic domain of stem cell antigen CD34 is essential for cytoadhesion signaling but not sufficient for proliferation signaling. Blood. 1998; 91(4):1152-1162; Altrock E, Muth C A, Klein G, Spatz J P, Lee-Thedieck C. The significance of integrin ligand nanopatterning on lipid raft clustering in hematopoietic stem cells. Biomaterials. 2012; 33(11):3107-3118; and Giebel B, Corbeil D, Beckmann J, et al. Segregation of lipid raft markers including CD133 in polarized human hematopoietic stem and progenitor cells. Blood. 2004; 104(8):2332-2338. In fact, studies comparing full-length CD34, a truncated form of CD34 (where most of the cytoplasmic domain is removed), and a chimeric molecule where the cytoplasmic domain of CD34 is fused with the extracellular domain of a cytokine receptor that is not believed to have a role in adhesion, implicate the cytoplasmic domain in the mediation of signaling events causing increased adhesion. Gotze K S, Schiemann M, Marz S, et al. CD133-enriched CD34() (CD33/CD38/CD71)() cord blood cells acquire CD34 prior to cell division and hematopoietic activity is exclusively associated with CD34 expression. Exp Hematol. 2007; 35(9):1408-1414; and Hu M C, Chien S L. The cytoplasmic domain of stem cell antigen CD34 is essential for cytoadhesion signaling but not sufficient for proliferation signaling. Blood. 1998; 91(4):1152-1162. This role of CD34 in homotypic cell adhesion is significantly abrogated through the tyrosine kinase inhibitor and integrin mAb blockers for LFA-1 and ICAM-1, suggesting a concomitant activation of the LFA-1/ICAM-1 pathway. Hu M C, Chien S L. The cytoplasmic domain of stem cell antigen CD34 is essential for cytoadhesion signaling but not sufficient for proliferation signaling. Blood. 1998; 91(4):1152-1162. These data accompanied with the highly negative structure of CD34 suggest that triggering CD34 signaling events via E-selectin (or anti-CD34 antibodies) contribute to the clustering of CD34 into lipid rafts of hematopoietic cells. This clustering could thereby aid in enhancing adhesion, downstream of selectin binding by activating LFA-1/ICAM-1 integrins and/or Porecha N K, English K, Hangoc G, Broxmeyer H E, Christopherson K W, 2nd. Enhanced functional response to CXCL12/SDF-1 through retroviral overexpression of CXCR4 on M07e cells: implications for hematopoietic stem cell transplantation. Stem Cells Dev. 2006; 15(3):325-333, unmasking adhesiveness of integrins to one another or toward the endothelium. Nielsen J S, McNagny K M. Influence of host irradiation on long-term engraftment by CD34-deficient hematopoietic stem cells. Blood. 2007; 110(3):1076-1077; Drew E, Merzaban J S, Seo W, Ziltener H J, McNagny K M. CD34 and CD43 inhibit mast cell adhesion and are required for optimal mast cell reconstitution. Immunity. 2005; 22(1):43-57; Hu M C, Chien S L. The cytoplasmic domain of stem cell antigen CD34 is essential for cytoadhesion signaling but not sufficient for proliferation signaling. Blood. 1998; 91(4):1152-1162; Majdic O, Stockl J, Pickl W F, et al. Signaling and induction of enhanced cytoadhesiveness via the hematopoietic progenitor cell surface molecule CD34. Blood. 1994; 83(5):1226-1234; and Nielsen J S, McNagny K M. CD34 is a key regulator of hematopoietic stem cell trafficking to bone marrow and mast cell progenitor trafficking in the periphery. Microcirculation. 2009; 16(6):487-496. Here, it was observed that a significant increase in the homotypic aggregation of cells when CD34 was silenced in KG1a cells or when followed by the incubation of the cells with E-Ig or with anti-CD34 mAbs. These results strongly suggest that CD34 has a multifaceted role in guiding HSPCs to E-selectin expressing cells.
[0034] D. Selectins
[0035] Both vascular selectins are required for human CD34.sup.pos cell rolling and homing on bone marrow microvessels, whereby defective rolling is only observed in E-/P-selectin double knockout non-obese/severe combined immunodeficiency mice. Hidalgo A, Weiss L A, Frenette P S. Functional selectin ligands mediating human CD34(+) cell interactions with bone marrow endothelium are enhanced postnatally. J Clin Invest. 2002; 110(4):559-569. Indeed, P-selectin was found to significantly purify committed human HSPCs (CD34.sup.posCD38.sup.neg cells) from total bone marrow MNCs. Zannettino A C, Berndt M C, Butcher C, Butcher E C, Vadas M A, Simmons P J. Primitive human hematopoietic progenitors adhere to P-selectin (CD62P). Blood. 1995; 85(12):3466-3477; Wojciechowski J C, Narasipura S D, Charles N, et al. Capture and enrichment of CD34-positive haematopoietic stem and progenitor cells from blood circulation using P-selectin in an implantable device. Br J Haematol. 2008; 140(6):673-681; and Narasipura S D, Wojciechowski J C, Charles N, Liesveld J L, King M R. P-Selectin coated microtube for enrichment of CD34+ hematopoietic stem and progenitor cells from human bone marrow. Clin Chem. 2008; 54(1):77-85. The data herein show that CD34 on HSPCs can function as an alternative P-selectin ligand. Analysis of the glycan requirements of CD34 binding to P-selectin underscore similar characteristic modifications of PSGL-1 binding to P-selectin with one key difference: Wilkins P P, Moore K L, McEver R P, Cummings R D. Tyrosine sulfation of P-selectin glycoprotein ligand-1 is required for high affinity binding to P-selectin. J Biol Chem. 1995; 270(39):22677-22680; and Sako D, Comess K M, Barone K M, Camphausen R T, Cumming D A, Shaw G D. A sulfated peptide segment at the amino terminus of PSGL-1 is critical for P-selectin binding. Cell. 1995; 83(2):323-331, both CD34 and PSGL-1 depend on O-glycosylation and tyrosine sulfation but only PSGL-1 requires sialylation to mediate binding. Moore K L, Stults N L, Diaz S, et al. Identification of a specific glycoprotein ligand for P-selectin (CD62) on myeloid cells. J Cell Biol. 1992; 118(2):445-456. However, the specific glycosylation profile needed for P-selectin recognition remains unknown. For example, P-selectin may bind to sialylated and nonsialylated forms of Le.sup.x/a structures. Nelson R M, Dolich S, Aruffo A, Cecconi O, Bevilacqua M P. Higher-affinity oligosaccharide ligands for E-selectin. J Clin Invest. 1993; 91(3):1157-1166. Also, binding of TIM-1 (T-cell immunoglobulin and mucin domain 1), a major P-selectin ligand that controls the rolling of activated T-cells, requires al-3 fucosylation and tyrosine sulfation for efficient binding but not sialylation. Angiari S, Donnarumma T, Rossi B, et al. TIM-1 glycoprotein binds the adhesion receptor P-selectin and mediates T cell trafficking during inflammation and autoimmunity. Immunity. 2014; 40(4):542-553. On a similar note, CD24, a sialoglycoprotein highly expressed in neutrophils as well as at early stages of B-cell development, does not display the sLe.sup.x epitope but does carry a HNK-1 sulfate-containing epitope and the O-glycans that are required for such binding. Angiari S, Donnarumma T, Rossi B, et al. TIM-1 glycoprotein binds the adhesion receptor P-selectin and mediates T cell trafficking during inflammation and autoimmunity. Immunity. 2014; 40(4):542-553; Pirruccello S J, LeBien T W. The human B cell-associated antigen CD24 is a single chain sialoglycoprotein. J Immunol. 1986; 136(10):3779-3784; Aigner S, Sthoeger Z M, Fogel M, et al. CD24, a mucin-type glycoprotein, is a ligand for P-selectin on human tumor cells. Blood. 1997; 89(9):3385-3395; and Sammar M, Aigner S, Altevogt P. Heat-stable antigen (mouse CD24) in the brain: dual but distinct interaction with P-selectin and L1. Biochim Biophys Acta. 1997; 1337(2):287-294. In addition to the modifications for P-selectin binding discussed above, CD34 also stained positive for the HNK-1 epitope, suggesting that it may also be important in mediating the binding of CD34 to P-selectin (data not shown). The dissociation binding constants measured here for PSGL-1 and CD34 were 3725 and 6214 nM, respectively, which are in accordance with previous studies, which found this value at 32020 nM (with a k.sub.off=1.40.1 s.sup.1 and k.sub.on=4.410.sup.6M.sup.1 s.sup.1) for monomeric P-selectin binding to PSGL-1 (isolated from human neutrophils); the injection of membrane-derived P-selectin resulted in slow on and off rates. Mehta P, Cummings R D, McEver R P. Affinity and kinetic analysis of P-selectin binding to P-selectin glycoprotein ligand-1. J Biol Chem. 1998; 273(49):32506-32513. The data has a characteristically similar dissociation binding constant with a slow apparent dissociation rate constant (k.sub.off-apparent10,000-fold increase) and a smaller apparent association rate constant (k.sub.on-apparent100-fold reduction). It is suspected that this is primarily due to the use of recombinant P-selectin, which is dimeric in nonionic detergents and therefore binds to PSGL-1 with higher avidity and slower on and off rates than monomeric forms of P-selectin.
[0036] E-selL activity depends on a specific posttranslational sLe.sup.x glycan decoration, which is detected by HECA-452, of the core protein. For example, PSGL-1 requires core 2 O-linked glycans that are sialylated and fucosylated to bind P- and E-selectins whereas tyrosine sulfate residues are not required for E-selectin binding. Martinez M, Joffraud M, Giraud S, et al. Regulation of PSGL-1 interactions with L-selectin, P-selectin, and E-selectin: role of human fucosyltransferase-IV and -VII. J Biol Chem. 2005; 280(7):5378-5390; Goetz D J, Greif D M, Ding H, et al. Isolated P-selectin glycoprotein ligand-1 dynamic adhesion to P- and E-selectin. J Cell Biol. 1997; 137(2):509-519; and Li F, Wilkins P P, Crawley S, Weinstein J, Cummings R D, McEver R P. Post-translational modifications of recombinant P-selectin glycoprotein ligand-1 required for binding to P- and E-selectin. J Biol Chem. 1996; 271(6):3255-3264. The E-selL activity of CD44 (i.e. HCELL) is conferred by the expression of sialylated, fucosylated binding determinants on both N- and O-glycans Dimitroff C J, Lee J Y, Rafii S, Fuhlbrigge R C, Sackstein R. CD44 is a major E-selectin ligand on human hematopoietic progenitor cells. J Cell Biol. 2001; 153(6):1277-1286; and AbuSamra D B, Al-Kilani A, Hamdan S M, Sakashita K, Gadhoum S Z, Merzaban J S. Quantitative Characterization of E-selectin Interaction with Native C D44 and P-selectin Glycoprotein Ligand-1 (PSGL-1) Using a Real Time Immunoprecipitation-based Binding Assay. J Biol Chem. 2015; 290(35):21213-21230, while critical sialofucosylated modifications are displayed mainly on O-glycans for CD43. Merzaban J S, Burdick M M, Gadhoum S Z, et al. Analysis of glycoprotein E-selectin ligands on human and mouse marrow cells enriched for hematopoietic stem/progenitor cells. Blood. 2011; 118(7):1774-1783. Work outlined here suggests that sialylated O-glycans rather than N-glycans are the key contributors to CD34 binding to E-selectin.
[0037] E. HSC Niches
[0038] At least two HSC niches have been described in the bone marrow: an endosteal or osteoblastic niche (quiescence) and a perivascular niche (activated niche). Each is anatomically distinct in the types of regulators that control HSPC proliferation. In the endosteal niche, E-selectin is significantly enriched in the endothelium of the vasculature near the interface with the endosteal region, whereas in the perivascular niche, E-selectin tends to concentrate around the central sinusoidal vasculature. A recent study confirmed slower HSC cycling in mice lacking E-selectin (Sele.sup./) compared to wild-type mice; this increased HSC quiescence and selfrenewal potential was further induced by an E-selectin antagonist, GMI-1070, in wild-type mice. Winkler I G, Barbier V, Nowlan B, et al. Vascular niche E-selectin regulates hematopoietic stem cell dormancy, self renewal and chemoresistance. Nat Med. 2012; 18(11):1651-1657. Thus expression of E-selectin in the perivascular niche accelerates HSC proliferation. In support of these previous results, CD34 expression correlates with the active proliferative phase of HSPCs while the negative population represents a more quiescent precursor population in the HSPC hierarchy. Dooley D C, Oppenlander B K, Xiao M. Analysis of primitive CD34- and CD34+ hematopoietic cells from adults: gain and loss of CD34 antigen by undifferentiated cells are closely linked to proliferative status in culture. Stem Cells. 2004; 22(4):556-569; and Ando K, Nakamura Y, Chargui J, et al. Extensive generation of human cord blood CD34(+) stem cells from Lin()CD34() cells in a long-term in vitro system. Exp Hematol. 2000; 28(6):690-699. The data imply that functional E-selLs are found in the more active CD34.sup.pos population, suggesting that these cells prefer to reside in the perivasculature niche where they may act as a control switch for the proliferation/differentiation of HSPCs.
III. Pharmaceutical Compositions
[0039] Still another embodiment provides a pharmaceutical composition containing one more CD34.sup.neg cells that are modified to contain one or more sLe.sup.x structures. The modified cells can be provided in a container in combination with pharmaceutically acceptable excipient, for example sterile, pH buffered saline or cell culture medium. In certain embodiments, the modified CD34.sup.neg cells are cryopreserved.
IV. Biomarker for AML
[0040] The data show that differentially decorated forms of CD34 exist and could be used as a unique marker of leukemic stem cells (LSCs). Following the removal of the E-selectin binding form of CD34 isolated from bone marrow CD34.sup.pos AML cells and KG1a cells (but not normal CD34.sup.pos cells), a CD34 glycoform lacking sLe.sup.x expression was identified. This non-EseIL reactive form of CD34, uniquely expressed on AML cells, could be considered a novel marker for this disease. Future studies using this glycoform of the protein as a target for the generation of mAbs may help to identify and target LSCs in the treatment of leukemia where LSCs are thought to be a major cause of disease relapse. This form of CD34 could provide a means to avoid cell death, as has been implicated by a previous study, suggesting that CD34 expression could be correlated with higher levels of anti-apoptotic proteins contributing to increased resistance of CD34 expressing AML cells to treatments over ones that do not. van Stijn A, van der Pol M A, Kok A, et al. Differences between the CD34+ and CD34-blast compartments in apoptosis resistance in acute myeloid leukemia. Haematologica. 2003; 88(5):497-508.
V. Methods of Use
[0041] One embodiment provides a method for improving engraftment of CD34.sup.neg cells into bone marrow by contacting the CD34.sup.neg cells with an effective amount of a fucosyltransferase to form sLe.sup.x structures on glycoproteins, glycolipids, or a combination thereof, of the CD34.sup.neg cells. In a preferred embodiment, the CD34.sup.neg cells are hematopoietic stem cells or hematopoietic precursor cells. The cells are also preferably autologous. The fucosyltransferase can be FT-VI or FT-VII.
[0042] Typically, CD34neg hematopoietic stem cells, hematopoietic progenitor cells or a combination thereof are isolated from a subject, preferably from a human subjectgra. The CD34.sup.neg cells are then treated ex vivo with fucosyltransferase to form sLe.sup.x structures on the CD34.sup.neg cells. The modified cells can optionally be expanded in cell culture and administered back to the subject. The modified CD34neg cells engraft into the bone marrow of the subject and produce hematopoietic cells.
[0043] Another embodiment provides a method for increasing hematopoietic cell production in a subject in need thereof, by administering CD34.sup.neg cells modified to have one or more sLe.sup.x structures. Preferably, the CD34.sup.neg cells are HSPCs. In one aspect, the subject has undergone chemotherapy or radiation therapy. In another aspect, the subject has cancer. Preferred cancers are hematological cancers such as AML. In still another aspect, the subject has a chronic infection.
[0044] The modified cells can be administered together with other anti-cancer drugs and imunothapies. Chemotherapeutic agents are well known in the art as well and therapeutics including antibodies to PD-1, PD-L1, and HER2.
[0045] One embodiment provides a method for detecting acute myeloid leukemia (AML) cells by assaying a sample of hematopoietic cells to detect the presence or absence of a non-EseIL reactive form of CD34, wherein the presence of a non-EseIL reactive form of CD34 is indicative of the presence of AML cells. In one aspect, the hematopoietic cells do not contain CD34neg cells. In another aspect, the hematopoietic cells are from a bone marrow sample.
EXAMPLES
Methods
Mass Spectrometry Analysis of Cognate E-Selectin Ligands Expressed on Human HSPCs:
[0046] E-selectin chimera (E-Ig) immunoprecipitated samples, performed as described in the online Supplemental Methods, were separated on 4-20% SDS-PAGE gels and protein bands were visualized by Simply Blue Safe Stain (Invitrogen). These bands were then reduced, alkylated, and digested in the gel with sequencing grade modified trypsin (Promega); the resultant peptides were extracted using buffer A: 5% acetonitrile (VWR), 95% water, and 0.1% formic acid (Sigma-Aldrich). Following extraction, peptides were dried to approximately 1 l sample volumes using a speed vacuum, fractionated by nanoflow liquid chromatography, and analyzed using a LTQ Orbitrap mass spectrometer (all acquired from Thermo Scientific). Raw data was converted to Mascot generic format files and searched using the online Mascot database.
Parallel Plate Rolling Assay of CD34 Knockdown Cells:
[0047] CD34 siRNA was predesigned by Ambion silencer select (Applied Bioscience). For each nucleofection, 110.sup.7 cells were pretreated with bromelain (500 g/ml, 20 min at 37 C.), washed with PBS, gently resuspended in SE buffer mix (Amaxa) containing 500 nM of CD34-targeting (CD34-KD) or nontargeting control (scrambled), and then pulsed with the program EO-100 using a 4D-Nucleofector system (Amaxa). CD34 expression in CD34-siRNA and scrambled nucleofected cells were monitored routinely after 48-72 h to be eligible for experimental use. For the cell binding assay, 110.sup.6CD34-KD or scrambled cells were suspended in HBSS with 10 mM HEPES and 2 mM CaCl.sub.2 and then perfused over an 80% confluent CHO-E cell monolayer at 0.3 dyne/cm.sup.2 for 60 s followed by stepwise increases every 15 s to a maximum of 4.2 dynes/cm.sup.2, as previously described in Wiese G, Barthel S R, Dimitroff C J. Analysis of physiologic E-selectin-mediated leukocyte rolling on microvascular endothelium. J Vis Exp. 2009 (24).
Example 1: CD34.SUP. Cells Express CD44 but not PSGL-1 or CD43
[0048] The CD34-fraction of the lineage depleted CD38-bone marrow cells, do express CD44, a cell surface adhesion molecule important for migration, but do not express other molecules important for this process such as PSGL-1 or CD43 (
[0049] Fucosyltransferase-6 (FucT-6), can be used to help create the sLex structure on glycoproteins such as CD44. Ex vivo treatment of stem cells with fucosyltransferases, particularly FucT-6 and FucT-7, increases cell surface sLe.sup.x determinants, boosts binding to E-selectin, and enhances homing and engraftment in various mouse models, Merzaban, J. S., J. Imitola, S. C. Starossom, B. Zhu, Y. Wang, J. Lee, A. J. Ali, M. Olah, A. F. Abuelela, S. J. Khoury, and R. Sackstein. 2015. Cell surface glycan engineering of neural stem cells augments neurotropism and improves recovery in a murine model of multiple sclerosis. Glycobiology. 25:1392-1409; Sackstein, R., J. S. Merzaban, D. W. Cain, N. M. Dagia, J. A. Spencer, C. P. Lin, and R. Wohlgemuth. 2008. Ex vivo glycan engineering of CD44 programs human multipotent mesenchymal stromal cell trafficking to bone. Nature medicine. 14:181-187; and Xia, L., J. M. McDaniel, T. Yago, A. Doeden, and R. P. McEver. 2004. Surface fucosylation of human cord blood cells augments binding to P-selectin and E-selectin and enhances engraftment in bone marrow. Blood. 104:3091-3096.
[0050] Using recombinant glycosyltransferases on CD34-HSPCs can enhance the migration capacity of these cells through improving their ability to bind E-selectin (
[0051]
Example 2: CD34.SUP.pos .HSPCs Express More E-Selectin Ligands than CD34.SUP.neg .HSPCs
[0052] Given the requisite expression of E-selectin on bone marrow endothelial cells for HSPC migration and trafficking, Sipkins D A, Wei X, Wu J W, et al. In vivo imaging of specialized bone marrow endothelial microdomains for tumour engraftment. Nature. 2005; 435(7044):969-973, the ability of E-selectin to bind CD34.sup.pos versus CD34.sup.neg cell populations isolated from HSPCs isolated from human bone marrow (BM-HSPCs) that were depleted of lineage committed cells including those cells expressing CD38 (Lin.sup.neg CD38.sup.neg) was compared. As expected, more CD34.sup.neg than CD34.sup.pos cells were found, (15% vs. 1%, respectively), which is in accordance with previous studies, Dooley D C, Oppenlander B K, Xiao M. Analysis of primitive CD34- and CD34+ hematopoietic cells from adults: gain and loss of CD34 antigen by undifferentiated cells are closely linked to proliferative status in culture. Stem Cells. 2004; 22(4):556-569; and Hao Q L, Shah A J, Thiemann F T, Smogorzewska E M, Crooks G M. A functional comparison of CD34+CD38-cells in cord blood and bone marrow. Blood. 1995; 86(10):3745-3753 (
Example 3: E-Selectin Binds CD34 Expressed on Human HSPCs
[0053] To fully elucidate all noncanonical E-selLs expressed on CD34.sup.pos HSPCs from the bone marrow (
[0054] Further, MS data analysis identified the previously unrecognized E-selL, CD34 as a potential ligand on HSPCs. To validate the binding activity of CD34 to E-selectin, CD34 immunoprecipitates were prepared from lysates of CD34.sup.pos fractions from normal UCB (CD34.sup.pos-UCB and bone marrow (CD34.sup.pos-BM) as well as from acute myeloid leukemic (AML) cells (KG1a cell line and bone marrow from AML patient [CD34.sup.pos-AML]), all of which had been normalized for protein concentration. Western blots of these immunoprecipitates probed with recombinant E-selectin human immunoglobulin chimeric protein (E-Ig; 1 g/ml, n=3) revealed a 120 kDa band in all samples tested, confirming that CD34 isolated from HSPCs bound E-selectin (
TABLE-US-00001 TABLE1 SummaryofpotentialE-selLsexpressedonCD34.sup.pos-BMcells identifiedbyMS. %Coverage ofpeptide Description Probability sequence PeptideSequence CD34 1 9.6 LGILDFTEQDVASHQSYSQK,TSSC[160]AEFKK,LGILDFTEQ DVASHQSYSQK,TSSC[160]AEFK,DRGEGLAR (SEQIDNO.:1) Galectin-9B 0.9997 7.3 FEDGGYVVC[160]NTRSIILSGTVLPSAQR (SEQIDNO.:2) Galectin-9 0.9998 7 FEDGGYVVC[160]NTR (SEQIDNO.:3) CD44/HCELL 1 5.8 LVINSGNGAVEDRSQEM[147]VHLVNKNLQNVDM[147]K (SEQIDNO.:4) Galectin-3 1 5.6 ASHEEVEGLVEKLADGGATNQGR AVDTWSWGER(SEQIDNO.5) CD43 0.9996 4.5 TGALVLSR(SEQIDNO.:6) Integrinbeta-2 1 3.9 TTEGC[160]LNPRYNGQVC[160]GGPGRSSQELEGSC[160]R (SEQIDNO.:7) PSGL-1 0.9907 2.2 SPGLTPEPR(SEQIDNO.:8) FLcytokine 0.9977 1.6 EMDLGLLSPQAQVEDS(SEQIDNO.:9) receptor Integrinalpha-L 0.9337 0.9 HGGLSPQPSQR (SEQIDNO.:10)
Example 4: CD34 is an E-selL Under Flow Conditions
[0055] To examine whether native CD34 on human HSPCs displays functional E-selL activity under flow conditions, we employed three approaches: the surface plasmon resonance (SPR)-based binding assay developed in our lab, AbuSamra D B, Al-Kilani A, Hamdan S M, Sakashita K, Gadhoum S Z, Merzaban J S. Quantitative Characterization of E-selectin Interaction with Native C D44 and P-selectin Glycoprotein Ligand-1 (PSGL-1) Using a Real Time Immunoprecipitation-based Binding Assay. J Biol Chem. 2015; 290(35):21213-21230; the Stamper-Woodruff assay, Stamper H B, Jr., Woodruff J J. Lymphocyte homing into lymph nodes: in vitro demonstration of the selective affinity of recirculating lymphocytes for high-endothelial venules. J Exp Med. 1976; 144(3):828-833, and the blot-rolling assay, Fuhlbrigge R C, King S L, Dimitroff C J, Kupper T S, Sackstein R. Direct real-time observation of E- and P-selectin-mediated rolling on cutaneous lymphocyte-associated antigen immobilized on Western blots. J Immunol. 2002; 168(11):5645-5651; and Sackstein R, Fuhlbrigge R. Western blot analysis of adhesive interactions under fluid shear conditions: the blot rolling assay. Methods Mol Biol. 2009; 536:343-354. CD34 binding was compared to the well-established E-selL, CD44 (i.e., HCELL). Dimitroff C J, Lee J Y, Rafii S, Fuhlbrigge R C, Sackstein R. CD44 is a major E-selectin ligand on human hematopoietic progenitor cells. J Cell Biol. 2001; 153(6):1277-1286; and Sackstein R. Fulfilling Koch's postulates in glycoscience: HCELL, GPS and translational glycobiology. Glycobiology. 2016; 26(6):560-570.
[0056] The real-time binding feature of our SPR assay enabled the isolation of endogenously expressed CD34 and CD44 from human HSPC lysate and to measure their direct binding to recombinant E-Ig. Ligand-specific mAbs (4H11 for CD34 and Hermes-3 for CD44) or isotype controls (MsIgG) were first immobilized on a CM-5 sensor chip. An increase in response units (RU) was detected when CD34 and CD44 protein from the HSPC lysate bound to the immobilized antibodies while only residual RU were detected in the control flow cells that were either left blank (no mAb) or were immobilized with isotype control (MsIgG) (
[0057] Immunoprecipitations of CD34 from both CD34.sup.pos-BM cells and KG1a cells also supported the presence of adhesive interactions observed with CHO-E cells in Stamper-Woodruff assays displaying 142 bound cells to CD34 isolated from CD34.sup.pos-BM and 262 bound cells to CD34 isolated from KG1a; no binding was observed in the presence of EDTA (
Example 5: The Equilibrium Binding Constants of E-Selectin to CD44, CD34, and PSGL-1 were Relatively Similar but Varied in their Binding Stoichiometry
[0058] Next, the binding affinities of E-selLs (CD44, CD34, CD43, and PSGL-1) expressed on KG1a cells were directly compared by consecutive E-Ig injection at a physiological NaCl concentration (150 mM) using the SPR-based immunoprecipitation assay. During 5 min of washing at 20 l/min, captured CD34 and CD43 continuously dissociated from their mAbs such that the amount of protein collected decreased by 20-25% (
[0059] Assuming 1:1 stoichiometry, E-Ig binding to E-selLs derived from the binding isotherm of the interaction (
TABLE-US-00002 TABLE 2 Summary of affinity and kinetic values for E-Ig binding to E-selLs: CD34, CD44, CD43 and PSGL-1 using a SPR-based assay. CD34 CD44 1.sup.st 2.sup.nd 3.sup.rd Mean SEM 1.sup.st 2.sup.nd 3.sup.rd Mean SEM K.sub.D nM 145 268 297 236.7 38 234 252 214 233 9 K.sub.off-apparent S.sup.1 2.90E04 1.60E04 3.31E04 2.6E4 0.4E4 1.10E04 2.00E04 2.73E04 1.9E4 0.4E4 K.sub.on-apparent M.sup.1S.sup.1 2030 597 1054 1230 346 641 794 1280 903 156 CD43 PSGL-1 1.sup.st 2.sup.nd Mean SEM 1.sup.st 2.sup.nd 3.sup.rd Mean SEM K.sub.D nM 508.7 376 442 47 342.5 207 229 259 34 K.sub.off-apparent S.sup.1 4.80E04 4.20E04 4.5E4 0.2E5 1.50E04 1.65E04 2.62E04 1.9E4 0.3E4 K.sub.on-apparent M.sup.1S.sup.1 944 1063.8 1004 43 438 797 1144 793 166
Example 6: CD34 Silencing Resulted in Markedly Faster Rolling Velocities at Higher Shear Stress
[0060] A parallel plate-rolling assay was used to directly measure the relative contribution of CD34 to the overall rolling behavior of HSPCs. Using a knockdown approach, the ability of cells lacking CD34 (CD34-KD) and control cells (scrambled) to tether and roll over E-selectin-expressing cells were compared. Changes in the phenotype and loss of the sLe.sup.x epitope that are associated with native HSPCs knockdown cells, Merzaban J S, Burdick M M, Gadhoum S Z, et al. Analysis of glycoprotein E-selectin ligands on human and mouse marrow cells enriched for hematopoietic stem/progenitor cells. Blood. 2011; 118(7):1774-1783, made it favorable to use the HSPC-like cell line KG1a. As measured by flow cytometry, siRNA nucleofection of KG1a cells resulted in a 50% reduction in the surface expression of CD34 relative to scrambled cells (geometric mean fluorescent intensity) (
Example 7: CD34 Binding to E-Selectin is Dependent on Sialofucosylated O-Glycans
[0061] L-selectin is well known to bind sulfated sLe.sup.x (6-sulfo-sLe) capped O- and N-glycans of the CD34 core protein. Hernandez Mir G, Helin J, Skarp K P, et al. Glycoforms of human endothelial CD34 that bind L-selectin carry sulfated sialyl Lewis x capped O- and N-glycans. Blood. 2009; 114(3):733-741. Both a SPR-based immunoprecipitation assay and a Western blot analysis were performed to determine the glycan modifications necessary for CD34 to bind E-selectin following treatment with the glycosidases, OSGE, which removes O-glycans or PNGaseF, which removes N-glycans, or with neuraminidase, which removes sialic acid. To perform a quantitative comparative analysis, we normalized the amount of mAb-captured ligands prior to E-Ig injection. Sensorgrams of E-Ig (354 nM) binding to antibody captured CD34 (CD344H11-mAb) from either neuraminidase-treated or control lysates showed that binding is eliminated following sialic acid digestion (
Example 8: P-Selectin Binds CD34 on Sulfated O-Glycans Expressed on Human HSPCs
[0062] E- and P-selectin are expressed on human bone marrow endothelial cells. Lehr J E, Pienta K J. Preferential adhesion of prostate cancer cells to a human bone marrow endothelial cell line. J Natl Cancer Inst. 1998; 90(2):118-123; and Schweitzer K M, Drager A M, van der Valk P, et al. Constitutive expression of E-selectin and vascular cell adhesion molecule-1 on endothelial cells of hematopoietic tissues. Am J Pathol. 1996; 148(1):165-175. To date, the only ligand known to bind all three selectins (E-/P- and L-selectin) is PSGL-1. Katayama Y, Hidalgo A, Furie B C, Vestweber D, Furie B, Frenette P S. PSGL-1 participates in E-selectin-mediated progenitor homing to bone marrow: evidence for cooperation between E-selectin ligands and alpha4 integrin. Blood. 2003; 102(6):2060-2067; Spertini O, Cordey A S, Monai N, Giuffre L, Schapira M. P-selectin glycoprotein ligand 1 is a ligand for L-selectin on neutrophils, monocytes, and CD34+ hematopoietic progenitor cells. J Cell Biol. 1996; 135(2):523-531; and Levesque J P, Zannettino A C, Pudney M, et al. PSGL-1-mediated adhesion of human hematopoietic progenitors to P-selectin results in suppression of hematopoiesis. Immunity. 1999; 11(3):369-378.
[0063] Recombinant P-selectin human immunoglobulin chimeric protein (P-Ig) was used to immunoprecipitate P-selectin ligands from KG1a or CD34.sup.pos-BM lysates, and subsequently were blotted for CD34 (EP373Y and QBend-10-mAb) or for PSGL-1 (KPL-1-mAb). CD34 and PSGL-1 were pulled out using P-Ig and no PSGL-1 was found within the CD34 immunoprecipitate (
[0064] Finally, the binding kinetics of CD34 in comparison to PSGL-1 were investigated using our SPR-based immunoprecipitation assay. Due to high background binding of P-Ig to the flow cell when these experiments were run under similar conditions to those mentioned above for E-Ig, optimization of the running buffer used on control flow cells was required (see online Supplemental Methods). As shown in