A SYSTEM AND METHOD FOR GENERATION AND USE OF RADIATION OUTCOME PREDICTION SCORE IN PATIENTS UNDERGOING RADIOTHERAPY

Abstract

A system and method for generation and use of radiation outcome prediction (response & side effects) score for patients undergoing radiotherapy for various medical conditions wherein the score is a personalized score, provided by analyzing multiple parameters 5 including the tumor specific, patient specific, gene specific and treatment planning specific parameter(s), during and post therapy.

Claims

1. A system for generating real-time, dynamic, comprehensive radiation outcome prediction score for patients undergoing radiation therapy for various medical conditions comprising: a processor; one or more rule based algorithms supported by big data analytics and machine learning coupled to the processor, further comprising: a interface module configured to receive raw data from multiple sources; a harmonization module configured to convert and combine the raw data transmitted from the interface module into uniform, unambiguous, standardized usable record structure for further processing; a storage module for storing the standardized data into records; a machine learning module comprising of one or more machine learning models trained by utilizing the stored standardized data and configured for performing the analytics to gaining insights on most appropriate treatment for a patient based on their clinical and medical characteristics; a clinical decision module configured to provide knowledge represented through machine learning module to aid physicians suggesting optimal specification of treatment parameters for a patient; an output layer configured to present the disease recurrence score, time to recurrence score, recovery probability score and/or adverse reaction score for a specific treatment; and a treatment assessment module configured to ratify the radiotherapy dosage parameters; wherein the score is a personalized score, provided by analyzing multiple parameters including the tumor specific, patient specific, gene specific and treatment planning specific parameter(s), during and post therapy.

2. The system as claimed in claim 1, wherein the clinical decision module comprises of adjuvant radiotherapy progression free survival model, adjuvant radiotherapy overall survival model, neoadjuvant radiotherapy RECIST criteria-based probability of tumor regression model, neoadjuvant radiotherapy progression free survival model, neoadjuvant radiotherapy symptom improvement model, radical radiotherapy overall survival model, radical radiotherapy RECIST criteria-based probability of tumor regression model, radical radiotherapy progression free survival model, radical radiotherapy symptom improvement model, palliative radiotherapy symptom improvement model, palliative radiotherapy RECIST criteria-based probability of tumor regression model, palliative radiotherapy progression free survival model, palliative radiotherapy overall survival model, radiotherapy areas of recurrence model, radiotherapy side effects grade model, radiotherapy side effects time to resolution and radiotherapy non-resolving side effects model.

3. The system as claimed in claim 1, wherein the system is capable of learning from the feedback provided in terms of tumor response and toxicity, and upgrade and autocorrect futuristically.

4. The system as claimed in claim 1, wherein the system also re-calibrates the scores for tumor response and toxicity, based on some or all of the parameters detailed (tumor regression, oxygen concentration, patient side effects) advising timely medical intervention based on the summary of overall risk level for all aspects of a patient's health (side effects vs tumor response) and accordingly help to update the radiation planning.

5. The system as claimed in claim 1, wherein the System takes into account the interplay of multiple factors that potentially influence the response of a given tumor by virtue of its cellular/tissue and organ level makeup and interaction of the same with surrounding normal tissues.

6. The system as claimed in claim 1, wherein the system is configured to consider parameters related to patient, tumor, genetic, physics, metabolic, radiation and allied medical information at physiological and pathological (like age/ethnicity/genetic makeup/temperature/hydration/oxygenation/beam strength/dose fractionations/pH/etc).

7. The system as claimed in claim 1, wherein the system is configured to provide more specific predictability of the tumor response to therapy as well as toxicity to the normal tissue.

8. The system as claimed in claim 1, wherein a change in any of parameter/s—individual or in combination with others—affects the remaining and thus helping to understand this interplay, by using a rule based system that upgrades itself on feedback mechanism and facilitates to generate a score that the clinician/radiation oncologist shall use to understand the probability of response vs toxicity to normal tissues and help to plan in a better way.

9. A method for generating real-time, dynamic, comprehensive radiation outcome prediction score for patients undergoing radiation therapy for various medical conditions by analyzing multiple parameters including the tumor specific, patient specific, gene specific and treatment planning specific parameter(s) to have a personalized score during and post therapy comprising: a. collection of raw data; b. pre-processing and standardisation of the collected data; c. storage of the standardised data; d. calculating the risk probabilities for survival, adverse events, and treatment response; e. computing patient-specific risk scores related to survival, adverse events, and treatment response by the clinical decision module; and f. updating the risk scores by incorporating current treatment information and disease response to the treatment through a feed back system.

10. The method as claimed in claim 9, wherein the method summarizes the overall risk level for all aspects of a patient's health including a. Probable tumor regression; b. Probable length of time for recurrence; c. Probable areas of recurrence; d. Probable side effects (long term and short term) to normal tissues; e. Probable regression time for side effects; f. Probable residual/non resolving side effects; g. Probable benefits of addition to chemotherapy or other adjuvant modalities; and facilitates in generating detailed interpretative information for each specific patient that is dynamic in nature, throughout the course of treatment and follow up.

Description

BRIEF DESCRIPTION OF THE DRAWINGS

[0044] FIG. 1 shows the detailed schematic representation of the device.

[0045] FIG. 2 illustrates the system workflow of data processing and analysis

[0046] FIG. 3 illustrates the architecture of the solution

[0047] FIG. 4 illustrates the overall process of data analysis comprising the input layer, analytical and output layer.

DETAILED DESCRIPTION OF THE INVENTION

[0048] The illustrative embodiments of the system include Artificial Intelligence based software system(s) for determining and analyzing radiotherapy treatment using tumor parameters. According to one embodiment, the tumor parameters shall be considered, that are known or postulated to affect the response rates of the cancer treatment using radio therapy. The system provides a method for computing scores that can be used to asses a cancer treatment specification for a given set of patient and tumor characteristics. Subsequently, the system aids physician in determining optimal dose of radiation required to combat the tumors.

[0049] In one embodiment, the system receives data about patient characteristics pertaining to clinical, medical, genomics, metabolomics and tumor information collected from his clinical reports, laboratory tests, Computed tomography (CT) scan and Magnetic resonance imaging (MRI). Data about the tumors is not limited to size, organ of origin, tissue of origin (histopathology), Immuno-histo-chemical behavior, grade of tumor, other known variables like lympho-vascular involvement, margins and other known factors as per availability. The System considers all the above data or only such data as may be relevant, on a case to case basis.

[0050] According to one embodiment, the system considers Patient clinical data related parameters that includes but not limited to Age, smoking history, alcohol use, ethnicity, weight, height, volume of organ proportionate to tumor, co-morbidity (for example, diabetes, collagen vascular disease, hypertension, inflammatory bowel disease), genetic makeup, body fat, food habits etc. shall be evaluated

[0051] According to one embodiment, the system considers Patient genomic data related parameters that includes but not limited an array of Known and proposed gene variations—irs1 (XRCC2), irs2 (XRCC8), irs3 (RAD51C), irs20 (PRKDC), IRS1-SF (XRCC3), xrs5 (XRCC5) and XR-1 (XRCC4) and all those that offer sensitivity or resistance will be taken into account.

[0052] According to one embodiment, the system considers Patient metabolomic data related parameters that includes but not limited to Metabolic variables like Lipid content/Bone density/Muscle mass, hypoxic tissue, estimated pH, hydration status, possibility of pre-existing free-radical insult at cellular level shall be considered

[0053] According to one embodiment, the system considers the Anatomical variables like Distance of organ traversed in RT field, Vessel wall thickness, hydration status of tissue, Percent of necrosis, stromal effect, tissues surrounding the tumor, proximity to critical structures.

[0054] According to one embodiment, the system considers Physics variables like Temp of organ vs Room, Beam features, dose fractions.

[0055] According to one embodiment, the system considers the Physiological variables like Blood flow/Local pH/Oxygenation.

[0056] According to one embodiment, the system takes into account the principles of radiation physics like Total radiation dose, dose per fraction, overall treatment time, planned doses to critical normal tissues.

[0057] According to one embodiment, the system considers, periodically, the physician and patient reported toxicity parameters.

The entire data, change from baseline and over a period of time shall be fed into the AI/Machine learning algorithm

[0058] The system generates the scores for assessment of a treatment using radiation therapy as illustrated in FIG. 2 by leveraging a set of software modules. These modules are interface module, harmonization module, storage module, machine learning module, clinical decision module and treatment assessment module.

[0059] The interface module 206 receives raw data about the patient characteristics and a suggested radio therapy treatment to that patient from the physicians. The data about the patient characteristic 202 and treatment characteristics 204 can be collected from devices or manually entered by physicians or caretakers. This raw data from interface module is transmitted to harmonization module 208, to combine the raw data captured from multiple sources into uniform, unambiguous, standardized usable record structure for further processing. The data from harmonization module is diffused to storage module 210 for storage of standardized patient's data and treatment information into records. These records are to be utilized for training the machine learning models and for performing analytics to gaining insight most appropriate treatment for a patient based on their clinical and medical characteristics. The Machine Learning Module 124 consumes data that has been preprocessed and utilizes techniques such as deep learning and artificial neural networks including but not limited to Recurrent Neural Networks (RNN), Long Short Term Memory (LSTM), Convolution Neural Networks (CNN), traditional machine learning techniques including but not limited to linear models (logistic regression, linear regression, support vector machines), Classification and Regression Trees (CART), boosting, bagging, random forests and other statistical techniques and rule based algorithms. The Machine Learning Module 124 produces output including—the probability of Progression Free Survival at time point t after Adjuvant Radiotherapy, the probability of Overall Survival at time point t after Adjuvant Radiotherapy, the probability of tumor regression after Neoadjuvant Radiotherapy, probability of Progression Free Survival at time t after Neoadjuvant radiotherapy, probability of symptom improvement after Neoadjuvant radiotherapy, probability of Overall Survival at time point t after Radical radiotherapy, probability of tumor regression after Radical radiotherapy, probability of Progression Free Survival at time t after Radical Radiotherapy, probability of symptom improvement after Radical Radiotherapy, probability of symptom improvement after Palliative Radiotherapy, probability of tumor regression after Palliative Radiotherapy, probability of Progression Free Survival at time t after Palliative Radiotherapy, probability of Overall Survival at time t after Palliative Radiotherapy, probability of tumor recurrence in organs or tissues after radiotherapy, probability of a particular grade of side effect occurring after radiotherapy, probability of resolution of side effect at time t after radiotherapy and probability of resolution of side effects after radiotherapy. Clinical decision module 212 provide knowledge represented through machine learning models to aid the physicians suggesting optimal specification of treatment parameters for a patient. These models are trained on the data stored in storage module until they attain power to predict scores related to a specific radiotherapy treatment. When the trained models are presented with a patient's characteristics and treatment specification, they will generate raw scores.

[0060] Output layer 214, presents the disease recurrence score, time to recurrence score and adverse reaction score for a specific treatment. Theses scores provides a platform for assessment of the treatments by the physicians. Treatment assessment 216 module is used to ratify the radiotherapy dosage parameters. Whether a specific dosage of the give patient characteristics will be appropriate as per the knowledge the model gained form past patient-treatments data. The final output of the whole process is the precise specifications of the parameters of the treatment 218 are presented to physicians for further clinical actions.

[0061] The Clinical decision module 212 has a set of models built to acquire insights about the assessment of radio therapy treatment from multiple aspects using scores. In one embodiment, the Clinical decision module has these models: [0062] Adjuvant Radiotherapy Progression Free Survival (Time to recurrence) Model [0063] Adjuvant Radiotherapy Overall Survival (Time to recurrence) Model [0064] Neoadjuvant Radiotherapy RECIST criteria-based Probability of tumor regression Model [0065] Neoadjuvant Radiotherapy Progression Free Survival (Time to recurrence) Model: [0066] Neoadjuvant Radiotherapy Symptom Improvement Model: [0067] Radical Radiotherapy Overall Survival (Time to recurrence) Model [0068] Radical Radiotherapy RECIST criteria-based Probability of tumor regression Model: [0069] Radical Radiotherapy Progression Free Survival (Time to recurrence) Model: [0070] Radical Radiotherapy Symptom Improvement Model [0071] Palliative Radiotherapy Symptom Improvement Model [0072] Palliative Radiotherapy RECIST criteria-based Probability of tumor regression Model [0073] Palliative Radiotherapy Progression Free Survival (Time to recurrence) Model [0074] Palliative Radiotherapy Overall Survival (Time to recurrence) Model [0075] Radiotherapy Areas of Recurrence Model [0076] Radiotherapy Side effects Grade Model [0077] Radiotherapy Side effects Time to Resolution [0078] Radiotherapy Non-resolving Side Effects Model

[0079] Each model has an objective/event for the give set of input characteristics and the generated outcome provides an information in terms of probability about the occurrence of the event with respect to time. Each models objective and its characteristics are discussed below: [0080] 1. Adjuvant Radiotherapy Progression Free Survival (Time to recurrence) Model:

[0081] Progression Free Survival serves as the primary indicator for success of adjuvant radiotherapy.

[0082] A model was built to determine Progression free survival after adjuvant radiotherapy. [0083] a. Dependent Variables: Including but not limited to the list of characteristics presented in Table 1.

TABLE-US-00002 TABLE 1 List of variables considered for modelling the Adjuvant Radiotherapy Progression Free Survival Age Smoking history Alcohol use Ethnicity Weight Height Volume of organ/tissue Diabetes e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory bowel Body fat disease disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor pathology Tumor volume Tumor vascular density Tumor oxygenation (estimated by imaging) Tumor hydration Tumor marker (ER) Tumor marker (PR) Tumor marker (HER 2) status Tumor marker Ki-67 index Genetic variations irs1 Genetic variation irs2 (other) (XRCC2) (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance of organ Vessel wall thickness hydration status of tissue traversed in RT field Percent of necrosis stromal effect tissues surrounding the proximity to critical tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ vs Room Beam features existing free-radical insult at cellular level Total radiation dose dose per fraction overall treatment time planned doses to critical normal tissues site-specific Physician-reported use of chemotherapy use of hormone therapy patient-reported toxicity toxicity use of surgery concurrent medications [0084] b. Independent Variable: Time to progression of disease [0085] c. Type of Model: Survival (Time to event) Model [0086] d. Output of Model: Probability of Progression free survival at time point t (t is a time point like 1 month after adjuvant radiotherapy). [0087] 2. Adjuvant Radiotherapy Overall Survival (Time to recurrence) Model: Overall Survival serves as the secondary indicator for success of adjuvant radiotherapy.

[0088] A model was built to determine Overall survival after adjuvant radiotherapy. [0089] a. Dependent Variables: Including but not limited to the list of characteristics presented in Table 2.

TABLE-US-00003 TABLE 2 List of variables considered for modelling the Adjuvant Radiotherapy Overall Survival Age Smoking history Alcohol use Ethnicity Weight Height Volume of organ/tissue Diabetes e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory bowel Body fat disease disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor pathology Tumor volume Tumor vascular density Tumor oxygenation (estimated by imaging) Tumor hydration Tumor marker (ER) Tumor marker (PR) Tumor marker (HER 2) status Tumor marker Ki-67 index Genetic variations irs1 Genetic variation irs2 (other) (XRCC2) (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance of organ Vessel wall thickness hydration status of tissue traversed in RT field Percent of necrosis stromal effect tissues surrounding the proximity to critical tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ vs Room Beam features existing free-radical insult at cellular level Total radiation dose dose per fraction overall treatment time planned doses to critical normal tissues site-specific Physician-reported use of chemotherapy use of hormone therapy patient-reported toxicity toxicity use of surgery concurrent medications [0090] b. Independent Variable: Time to overall survival [0091] c. Type of Model: Survival (Time to event) Model [0092] d. Output of Model: Probability of overall survival at time point t (t is a time point like 1 month after adjuvant radiotherapy) [0093] 3. Neoadjuvant Radiotherapy RECIST criteria-based Probability of tumor regression Model:

[0094] RECIST criteria-based Probability of tumor regression serves as the primary indicator for success of neoadjuvant radiotherapy.

[0095] A model was built to determine Probability of tumor regression after neoadjuvant radiotherapy. [0096] a. Dependent Variables: Including but not limited to the list of characteristics presented in Table 3.

TABLE-US-00004 TABLE 3 List of variables considered for modelling Neoadjuvant Radiotherapy RECIST criteria-based Probability Age Smoking history Alcohol use Ethnicity Weight Height Volume of organ/tissue Diabetes e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory bowel Body fat disease disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor pathology Tumor volume Tumor vascular density Tumor oxygenation (estimated by imaging) Tumor hydration Tumor marker (ER) Tumor marker (PR) Tumor marker (HER 2) status Tumor marker Ki-67 index Genetic variations irs1 Genetic variation irs2 (other) (XRCC2) (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance of organ Vessel wall thickness hydration status of tissue traversed in RT field Percent of necrosis stromal effect tissues surrounding the proximity to critical tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ vs Room Beam features existing free-radical insult at cellular level Total radiation dose dose per fraction overall treatment time planned doses to critical normal tissues site-specific Physician-reported use of chemotherapy use of hormone therapy patient-reported toxicity toxicity use of surgery concurrent medications [0097] b. Independent Variable: Whether tumor regression occurred?

[0098] The mapping from RECIST criteria to whether tumor regression occurred was as follows:

[0099] Data points with Complete Response and Partial Response were together considered as tumor regression occurred

[0100] Data Points with Stable Disease and Progressive Disease were together considered as absence of tumor regression. [0101] c. Type of Model: Binary Classification Model [0102] d. Output of Model: Probability of tumor regression post neoadjuvant radiotherapy [0103] 4. Neoadjuvant Radiotherapy Progression Free Survival (Time to recurrence) Model:

[0104] Progression Free Survival serves as the secondary indicator for success of neoadjuvant radiotherapy.

[0105] A model was built to determine Progression free survival after neoadjuvant radiotherapy. [0106] a. Dependent Variables: Including but not limited to the list of characteristics presented in Table 4.

TABLE-US-00005 TABLE 4 List of variables considered for modelling Neoadjuvant Radiotherapy Progression Free Survival Age Smoking history Alcohol use Ethnicity Weight Height Volume of organ/tissue Diabetes e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory bowel Body fat disease disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor pathology Tumor volume Tumor vascular density Tumor oxygenation (estimated by imaging) Tumor hydration Tumor marker (ER) Tumor marker (PR) Tumor marker (HER 2) status Tumor marker Ki-67 index Genetic variations irsl Genetic variation irs2 (other) (XRCC2) (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance of organ Vessel wall thickness hydration status of tissue traversed in RT field Percent of necrosis stromal effect tissues surrounding the proximity to critical tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ vs Room Beam features existing free-radical insult at cellular level Total radiation dose dose per fraction overall treatment time planned doses to critical normal tissues site-specific Physician-reported use of chemotherapy use of hormone therapy patient-reported toxicity toxicity use of surgery concurrent medications [0107] b. Independent Variable: Time to progression of disease [0108] c. Type of Model: Survival (Time to event) Model [0109] d. Output of Model: Probability of Progression free survival at time point t (t is a time point like 1 month after neoadjuvant radiotherapy) [0110] 5. Neoadjuvant Radiotherapy Symptom Improvement Model:

[0111] Probability of Symptom Improvement serves as the tertiary indicator for success of neoadjuvant radiotherapy.

[0112] A model was built to determine Probability of Symptom Improvement after neoadjuvant radiotherapy. [0113] a. Dependent Variables: Including but not limited to the list of characteristics presented in Table 5.

TABLE-US-00006 TABLE 5 List of variables considered for modelling Neoadjuvant Radiotherapy Symptom Improvement Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory bowel Body fat disease disease Nutrition Tumor type Tumor stage Tumor grade (TNM) Tumor pathology Tumor volume Tumor vascular Tumor density oxygenation (estimated by imaging) Tumor hydration Tumor marker Tumor marker Tumor marker status (ER) (PR) (HER 2) Tumor marker Ki-67 index Genetic Genetic (other) variations variation irs1 (XRCC2) irs2 (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF xrs5 (XRCC5) (XRCC3) XR-1 (XRCC4) Distance of organ Vessel wall hydration traversed in RT thickness status of field tissue Percent of stromal effect tissues proximity necrosis surrounding to critical the tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ Beam features existing free- vs Room radical insult at cellular level Total radiation dose per fraction overall planned doses to dose treatment critical normal time tissues site-specific Physician-reported use of use of hormone patient- toxicity chemotherapy therapy reported toxicity use of surgery concurrent medications [0114] b. Dependent Variable: Whether Symptom Improvement occurred? [0115] c. Type of Model: Binary Classification Model [0116] d. Output of Model: Probability of symptom improvement post neoadjuvant radiotherapy [0117] 6. Radical Radiotherapy Overall Survival (Time to recurrence) Model: Overall Survival serves as the primary indicator for success of Radical radiotherapy.

[0118] A model was built to determine Overall survival after Radical radiotherapy. [0119] a. Dependent Variables: Including but not limited to the list of characteristics presented in Table 6.

TABLE-US-00007 TABLE 6 List of variables for modelling Radical Radiotherapy Overall Survival Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory Body fat disease bowel disease Nutrition Tumor type Tumor stage Tumor grade (TNM) Tumor Tumor volume Tumor vascular Tumor pathology density oxygenation (estimated by imaging) Tumor Tumor marker Tumor marker Tumor marker hydration (ER) (PR) (HER 2) status Tumor marker Ki-67 index Genetic variations Genetic variation (other) irs1 (XRCC2) irs2 (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 Distance of organ Vessel wall hydration status (XRCC4) traversed in thickness of tissue RT field Percent of stromal effect tissues proximity necrosis surrounding to critical the tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ vs Beam features existing Room free-radical insult at cellular level Total radiation dose per fraction overall treatment planned doses to dose time critical normal tissues site-specific Physician- use of use of hormone patient-reported reported chemotherapy therapy toxicity toxicity use of surgery concurrent medications [0120] b. Independent Variable: Time to overall survival [0121] c. Type of Model: Survival (Time to event) Model [0122] d. Output of Model: Probability of overall survival at time point t (t is a time point like 1 month after Radical radiotherapy) [0123] 7. Radical Radiotherapy RECIST criteria-based Probability of tumor regression Model:

[0124] RECIST criteria-based Probability of tumor regression serves as the secondary indicator for success of Radical radiotherapy.

[0125] A model was built to determine Probability of tumor regression after Radical radiotherapy. [0126] a. Dependent Variables: Including but not limited to—

TABLE-US-00008 TABLE 7 List of variables considered for modelling Radical Radiotherapy RECIST criteria-based Probability Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory Body fat disease bowel disease Nutrition Tumor type Tumor stage Tumor grade (TNM) Tumor pathology Tumor volume Tumor vascular Tumor density oxygenation (estimated by imaging) Tumor hydration Tumor marker Tumor marker Tumor marker status (ER) (PR) (HER 2) Tumor marker Ki-67 index Genetic Genetic (other) variations variation irs1 (XRCC2) irs2 (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF xrs5 (XRCC5) (XRCC3) XR-1 (XRCC4) Distance of organ Vessel wall hydration traversed in RT thickness status of field tissue Percent of stromal effect tissues proximity necrosis surrounding to critical the tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ Beam features existing free- vs Room radical insult at cellular level Total radiation dose per fraction overall planned doses to dose treatment critical normal time tissues site-specific Physician- use of use of hormone patient- reported chemotherapy therapy reported toxicity toxicity use of surgery concurrent medications [0127] b. Independent Variable: Whether tumor regression occurred?

[0128] The mapping from RECIST criteria to whether tumor regression occurred was as follows:

[0129] Data points with Complete Response and Partial Response were together considered as tumor regression occurred

[0130] Data Points with Stable Disease and Progressive Disease were together considered as absence of tumor regression. [0131] c. Type of Model: Binary Classification Model [0132] to d. Output of Model: Probability of tumor regression post Radical radiotherapy [0133] 8. Radical Radiotherapy Progression Free Survival (Time to recurrence) Model:

[0134] Progression Free Survival serves as the tertiary indicator for success of Radical radiotherapy.

[0135] A model was built to determine Progression free survival after Radical radiotherapy. [0136] a. Dependent Variables: Including but not limited to the list of characteristics that

TABLE-US-00009 TABLE 8 List of variables considered for modelling Radical Radiotherapy Progression Free Survival Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g breast volume in case of breast cancer Hypertension Collagen Inflammatory Body fat vascular bowel disease disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor pathology Tumor volume Tumor vascular Tumor density oxygenation (estimated by imaging) Tumor hydration Tumor marker Tumor marker Tumor marker status (ER) (PR) (HER 2) Tumor marker Ki-67 index Genetic Genetic (other) variations variation irs1 (XRCC2) irs2 (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance of organ Vessel wall hydration traversed in RT thickness status of field tissue Percent of stromal effect tissues proximity necrosis surrounding to critical the tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ Beam features existing free-radical vs Room insult at cellular level Total radiation dose per fraction overall planned dose treatment doses to time critical normal tissues site-specific Physician- use of use of patient- reported chemotherapy hormone reported toxicity toxicity therapy use of surgery concurrent medications [0137] b. Independent Variable: Time to progression of disease [0138] c. Type of Model: Survival (Time to event) Model [0139] d. Output of Model: Probability of Progression free survival at time point t (t is a time point like 1 month after Radical radiotherapy) [0140] 9. Radical Radiotherapy Symptom Improvement Model:

[0141] Probability of Symptom Improvement serves as the quaternary indicator for success of Radical radiotherapy.

[0142] A model was built to determine Probability of Symptom Improvement after Radical radiotherapy. [0143] a. Dependent Variables: Including but not limited to—

TABLE-US-00010 Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory bowel Body fat disease disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor Tumor volume Tumor Tumor pathology vascular oxygenation density (estimated by imaging) Tumor hydration Tumor marker Tumor marker Tumor marker status (ER) (PR) (HER 2) Tumor marker Ki-67 index Genetic variations Genetic variation (other) irs1 (XRCC2) irs2 (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance Vessel wall hydration of organ thickness status of traversed in RT tissue field Percent of stromal effect tissues proximity necrosis surrounding to critical the tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ Beam features existing free- vs Room radical insult at cellular level Total radiation dose per overall planned doses to dose fraction treatment critical normal time tissues site-specific Physician- use of use of hormone patient- reported chemotherapy therapy reported toxicity toxicity use of surgery concurrent medications [0144] b. Independent Variable: Whether Symptom Improvement occurred? [0145] c. Type of Model: Binary Classification Model [0146] d. Output of Model: Probability of symptom improvement post Radical radiotherapy [0147] 10. Palliative Radiotherapy Symptom Improvement Model:

[0148] Probability of Symptom Improvement serves as the primary indicator for success of palliative radiotherapy.

[0149] A model was built to determine Probability of Symptom Improvement after Palliative radiotherapy. [0150] a. Dependent Variables: Including but not limited to list of characteristics presented in Table 10.

TABLE-US-00011 TABLE 10 List of variables considered for modelling Palliative Radiotherapy Symptom Improvement Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory bowel Body fat disease disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor pathology Tumor volume Tumor Tumor vascular oxygenation density (estimated by imaging) Tumor hydration Tumor marker Tumor marker Tumor marker status (ER) (PR) (HER 2) Tumor marker Ki-67 index Genetic Genetic (other) variations variation irs1 (XRCC2) irs2 (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance Vessel wall hydration of organ thickness status of traversed in RT tissue field Percent of necrosis stromal effect tissues surrounding proximity to critical the tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ Beam features existing free-radical vs Room insult at cellular level Total radiation dose dose per fraction overall treatment planned doses to time critical normal tissues site-specific Physician- use of use of hormone patient- reported chemotherapy therapy reported toxicity toxicity use of surgery concurrent medications [0151] b. Independent Variable: Whether Symptom Improvement occurred? [0152] c. Type of Model: Binary Classification Model [0153] d. Output of Model: Probability of symptom improvement post Palliative radiotherapy [0154] 11. Palliative Radiotherapy RECIST criteria-based Probability of tumor regression Model:

[0155] RECIST criteria-based Probability of tumor regression serves as the secondary indicator for success of Palliative radiotherapy.

[0156] A model was built to determine Probability of tumor regression after Palliative radiotherapy. [0157] a. Dependent Variables: Including but not limited to the list of characteristics as presented in Table 11.

TABLE-US-00012 TABLE 11 List of variables considered for modelling for Palliative Radiotherapy RECIST criteria-based Probability of tumor regression Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory Body fat disease bowel disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor Tumor volume Tumor vascular Tumor pathology density oxygenation (estimated by imaging) Tumor Tumor marker Tumor marker Tumor marker hydration (ER) (PR) (HER 2) status Tumor marker Ki-67 index Genetic Genetic variations variation (other) irs1 (XRCC2) irs2 (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance of organ Vessel wall hydration traversed thickness status in RT field of tissue Percent of stromal effect tissues proximity to necrosis surrounding critical the tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ Beam features existing vs Room free-radical insult at cellular level Total radiation dose per fraction overall treatment planned doses to dose time critical normal tissues site-specific Physician-reported use of use of hormone patient- toxicity chemotherapy therapy reported toxicity use of surgery concurrent medications [0158] b. Independent Variable: Whether tumor regression occurred?

[0159] The mapping from RECIST criteria to whether tumor regression occurred was as follows:

[0160] Data points with Complete Response and Partial Response were together considered as tumor regression occurred

[0161] Data Points with Stable Disease and Progressive Disease were together considered as absence of tumor regression. [0162] c. Type of Model: Binary Classification Model [0163] d. Output of Model: Probability of tumor regression post Palliative radiotherapy [0164] 12. Palliative Radiotherapy Progression Free Survival (Time to recurrence) Model:

[0165] Progression Free Survival serves as the tertiary indicator for success of Palliative radiotherapy.

[0166] A model was built to determine Progression free survival after Palliative radiotherapy. [0167] a. Dependent Variables: Including but not limited to the list of characteristics presented in Table 12.

TABLE-US-00013 TABLE 12 List of variables considered for modelling Palliative Radiotherapy Progression Free Survival Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory Body fat disease bowel disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor pathology Tumor volume Tumor vascular Tumor density oxygenation (estimated by imaging) Tumor hydration Tumor marker Tumor marker Tumor marker status (ER) (PR) (HER 2) Tumor marker Ki-67 index Genetic variations Genetic variation (other) irs1 (XRCC2) irs2 (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance of organ Vessel wall hydration status traversed in RT thickness of tissue field Percent of stromal effect tissues proximity necrosis surrounding to critical the tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ Beam features existing vs Room free-radical insult at cellular level Total radiation dose per fraction overall treatment planned doses to dose time critical normal tissues site-specific Physician- use of use of hormone patient- reported chemotherapy therapy reported toxicity toxicity use of surgery concurrent medications [0168] b. Independent Variable: Time to progression of disease [0169] c. Type of Model: Survival (Time to event) Model [0170] d. Output of Model: Probability of Progression free survival at time point t (t is a time point like 1 month after Palliative radiotherapy)

[0171] 13. Palliative Radiotherapy Overall Survival (Time to recurrence) Model:

[0172] Overall Survival serves as the quaternary indicator for success of Palliative radiotherapy.

[0173] A model was built to determine Overall survival after Palliative radiotherapy. [0174] a. Dependent Variables: Including but not limited to the list of characteristics presented in Table 13.

TABLE-US-00014 TABLE 13 List of variables considered for modelling Palliative Radiotherapy Overall Survival Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory Body fat disease bowel disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor Tumor volume Tumor vascular Tumor pathology density oxygenation (estimated by imaging) Tumor hydration Tumor marker Tumor marker Tumor marker status (ER) (PR) (HER 2) Tumor marker Ki-67 index Genetic variations Genetic variation (other) irs1 (XRCC2) irs2 (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance of organ Vessel wall hydration status traversed in RT thickness of tissue field Percent of stromal effect tissues proximity necrosis surrounding to critical the tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ vs Beam features existing Room free-radical insult at cellular level Total radiation dose per fraction overall treatment planned doses to dose time critical normal tissues site-specific Physician- use of use of hormone patient-reported reported chemotherapy therapy toxicity toxicity use of surgery concurrent medications [0175] b. Independent Variable: Time to overall survival [0176] C. Type of Model: Survival (Time to event) Model [0177] d. Output of Model: Probability of overall survival at time point t (t is a time point like 1 month after Palliative radiotherapy) [0178] 14. Radiotherapy Areas of Recurrence Model:

[0179] A model was built to predict areas of recurrence following radiotherapy. [0180] a. Dependent Variables: Including but not limited to the list of characteristics presented in Table 14.

TABLE-US-00015 TABLE 14 List of the variables considered for modelling as Radiotherapy Areas of Recurrence Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory Body fat disease bowel disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor pathology Tumor volume Tumor vascular Tumor density oxygenation (estimated by imaging) Tumor hydration Tumor marker Tumor marker Tumor marker status (ER) (PR) (HER 2) Tumor marker Ki-67 index Genetic variations Genetic variation (other) irs1 (XRCC2) irs2 (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance of organ Vessel wall hydration traversed in RT thickness status of field tissue Percent of necrosis stromal effect tissues surrounding proximity to critical the tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of Temp of organ Beam features pre-existing vs Room free-radical insult at cellular level Total radiation dose per fraction overall treatment planned doses to dose time critical normal tissues site-specific Physician- use of use of hormone patient- reported chemotherapy therapy reported toxicity toxicity use of surgery concurrent medications [0181] b. Independent Variable: Organ/tissues where tumor recurrence occurred [0182] c. Type of Model: Multi-label Classification Model [0183] d. Output of Model: Probability of tumor recurrence in each organ/tissue post radiotherapy [0184] 15. Radiotherapy Side effects Grade Model:

[0185] A model was built to predict grade of each side effect following radiotherapy. [0186] a. Dependent Variables: Including but not limited to the list of characteristics presented in Table 15.

TABLE-US-00016 TABLE 15 List of variables considered for modelling Radiotherapy Side effects Grade Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory Body fat disease bowel disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor Tumor volume Tumor vascular Tumor pathology oxygenation density (estimated by imaging) Tumor hydration Tumor marker Tumor marker Tumor marker status (ER) (PR) (HER 2) Tumor marker Ki-67 index Genetic variations Genetic variation (other) irs1 (XRCC2) irs2 (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance of organ Vessel wall hydration status traversed in RT thickness of tissue field Percent of stromal effect tissues proximity necrosis surrounding to critical the tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of Temp of organ vs Beam features pre-existing Room free-radical insult at cellular level Total radiation dose per fraction overall treatment planned doses to dose time critical normal tissues site-specific Physician- use of use of hormone patient- reported chemotherapy therapy reported toxicity toxicity use of surgery concurrent medications [0187] b. Independent Variable: Grade of Side effect [0188] c. Type of Model: Multioutput—Multi-class Classification Model [0189] d. Output of Model: Probability of a particular grade of side effect occurring post radiotherapy [0190] 16. Radiotherapy Side effects Time to Resolution:

[0191] A model was built to determine time to resolution of a particular side effect post radiotherapy.

[0192] This model upon training was used to predict time to resolution for those side effects that were predicted to occur by the ‘Radiotherapy Side effects Model. [0193] a. Dependent Variables: Including but not limited to the list of characteristics presented in Table 16.

TABLE-US-00017 TABLE 16 List of variables considered for modelling Radiotherapy Side effects Time to Resolution Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g. breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory Body fat disease bowel disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor Tumor volume Tumor vascular Tumor pathology density oxygenation (estimated by imaging) Tumor Tumor marker Tumor marker Tumor marker hydration (ER) (PR) (HER 2) status Tumor Ki-67 index Genetic variations Genetic variation marker irs1 (XRCC2) irs2 (XRCC8) (other) irs3 irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) (RAD51C) XR-1 Distance of organ Vessel wall hydration status (XRCC4) traversed in RT thickness of tissue field Percent of stromal effect tissues proximity necrosis surrounding to critical the tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ vs Beam features existing free- Room radical insult at cellular level Total dose per fraction overall treatment planned doses to radiation time critical normal dose tissues site-specific Physician-reported use of use of hormone patient- toxicity chemotherapy therapy reported toxicity use of concurrent surgery medications [0194] b. Independent Variable: Time to resolution of side effect [0195] c. Type of Model: Survival (Time to event) Model [0196] d. Output of Model: Probability of resolution of side effect at time point t (t is a time point like 1 month after radiotherapy) [0197] 17. Radiotherapy Non-resolving Side Effects Model:

[0198] A model was built to predict side effects that will not resolve following radiotherapy. [0199] a. Dependent Variables: Including but not limited to the list of characteristics presented in Table 17.

TABLE-US-00018 TABLE 17 List of variables considered for modelling Radiotherapy Non- resolving Side Effects Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory Body fat disease bowel disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor Tumor volume Tumor vascular Tumor pathology density oxygenation (estimated by imaging) Tumor Tumor marker Tumor marker Tumor marker hydration (ER) (PR) (HER 2) status Tumor marker Ki-67 index Genetic variations Genetic variation (other) irs1 (XRCC2) irs2 (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance of organ Vessel wall hydration status traversed in RT field thickness of tissue Percent of stromal effect tissues proximity necrosis surrounding to critical the tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ vs Beam features existing Room free-radical insult at cellular level Total radiation dose per fraction overall treatment planned doses to dose time critical normal tissues site-specific Physician- use of use of hormone patient- reported chemotherapy therapy reported toxicity toxicity use of surgery concurrent medications [0200] b. Independent Variable: Resolution of Side effect [0201] c. Type of Model: Multilabel Classification Model [0202] d. Output of Model: Probability of resolution of side effects occurring post radiotherapy

EXAMPLES

A] Exemplary System of Determining Tumor Regression, Survival Time and Symptom Improvement Following Radiotherapy

[0203] The System receives as input in various embodiments of the claimed invention data including but not limited to the demographic, clinical, social, genomic, omics data and treatment data about the patient as presented in Table 18.

TABLE-US-00019 TABLE 18 List of variables considered for determining tumor regression, survival time and symptom improvement following radiotherapy Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory Body fat disease bowel disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor Tumor volume Tumor vascular Tumor pathology density oxygenation (estimated by imaging) Tumor hydration Tumor marker Tumor marker Tumor marker status (ER) (PR) (HER 2) Tumor marker Ki-67 index Genetic variations Genetic variation (other) irs1 (XRCC2) irs2 (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance of organ Vessel wall hydration status traversed in RT thickness of tissue field Percent of stromal effect tissues proximity necrosis surrounding to critical the tumor structures Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ Beam features existing free- vs Room radical insult at cellular level Total radiation dose per fraction overall treatment planned doses to dose time critical normal tissues site-specific Physician-reported use of use of hormone patient-reported toxicity chemotherapy therapy toxicity use of surgery concurrent medications

Example 1: Survival Prediction Following Radiotherapy 1—Adjuvant Radiotherapy

[0204] The system consumes the input data and use advanced machine learning and statistical techniques to output a survival score (a value between 0 and 1) which represents the survival likelihood at time t (for example 1 month) following adjuvant radiotherapy.

[0205] Using the score, clinicians can intervene and alter the modifiable treatment, patient and clinical characteristics so as to obtain longest survival time (as per progression free survival and overall survival times).

Example 2: Survival Prediction Following Radiotherapy 2—Neoadjuvant Radiotherapy

[0206] The system consumes the input data and use advanced machine learning and statistical techniques to output a survival score (a value between 0 and 1) which represents the survival likelihood, tumor regression likelihood and symptom improvement likelihood at time t (for example 1 month) following neoadjuvant radiotherapy.

[0207] Using the score, clinicians can intervene and alter the modifiable treatment, patient and clinical characteristics so as to obtain maximum tumor regression (as per RECIST criteria), longest survival time (as per progression free survival time) and maximum symptom improvement.

Example 3: Survival Prediction Following Radiotherapy 3—Radical Radiotherapy

[0208] The system consumes the input data and use advanced machine learning and statistical techniques to output a survival score (a value between 0 and 1) which represents the survival likelihood, tumor regression likelihood and symptom improvement likelihood at time t (for example 1 month) following radical radiotherapy.

[0209] Using the score, clinicians can intervene and alter the modifiable treatment, patient and clinical characteristics so as to obtain maximum tumor regression (as per RECIST criteria), longest survival time (as per progression free survival and overall survival times) and maximum symptom improvement.

Example 4: Survival Prediction Following Radiotherapy 4—Palliative Radiotherapy

[0210] The system consumes the input data and use advanced machine learning and statistical techniques to output a survival score (a value between 0 and 1) which represents the survival likelihood, tumor regression likelihood and symptom improvement likelihood at time t (for example 1 month) following palliative radiotherapy.

[0211] Using the score, clinicians can intervene and alter the modifiable treatment, patient and clinical characteristics so as to obtain maximum tumor regression (as per RECIST criteria), longest survival time (as per progression free survival and overall survival times) and maximum symptom improvement.

B] Exemplary System of Determining Side Effects Following Radiotherapy

[0212] The System receives as input in various embodiments of the claimed invention data including but not limited to the demographic, clinical, social, genomic, omics data and treatment data about the patient as presented as Table 19.

TABLE-US-00020 TABLE 19 List of variables considered for determining side effects following radiotherapy Age Smoking history Alcohol use Ethnicity Weight Height Volume of Diabetes organ/tissue e.g breast volume in case of breast cancer Hypertension Collagen vascular Inflammatory Body fat disease bowel disease Nutrition Tumor type Tumor stage (TNM) Tumor grade Tumor Tumor volume Tumor vascular Tumor pathology density oxygenation (estimated by imaging) Tumor Tumor marker Tumor marker Tumor marker hydration status (ER) (PR) (HER 2) Tumor marker Ki-67 index Genetic variations Genetic variation (other) irs1 (XRCC2) irs2 (XRCC8) irs3 (RAD51C) irs20 (PRKDC) IRS1-SF (XRCC3) xrs5 (XRCC5) XR-1 (XRCC4) Distance of organ Vessel wall hydration status traversed in RT thickness of tissue field Percent of stromal effect tissues proximity to necrosis surrounding critical structures the tumor Lipid content Bone density Muscle mass hypoxic tissue estimated pH possibility of pre- Temp of organ Beam features existing free-radical vs Room insult at cellular level Total radiation dose per fraction overall treatment planned doses to dose time critical normal tissues site-specific Physician-reported use of use of hormone patient-reported toxicity chemotherapy therapy toxicity use of surgery concurrent medications

Example 5: Adverse Event Prediction Following Radiotherapy

[0213] The system consumes the input data and use advanced machine learning and statistical techniques to output an adverse event score (a value between 0 and 1) which represents the adverse events predicted, grade of adverse events predicted, the number of adverse events predicted, the time to resolution of adverse events (for example 1 month) following radiotherapy and non-resolving adverse events.

[0214] Using the score, clinicians can intervene and alter the modifiable treatment, patient and clinical characteristics so as to obtain minimum adverse events in terms of number, grade, fastest time to resolution and minimum non-resolving adverse events.

Algorithms:

Survival Scores:

1. Adjuvant Radiotherapy Survival Score:

Survival Score

[0215] Raw Survival Score: Probability of survival at time t
Survival Score=normalize raw survival score to range 0.00 to 1.00.

Example

[0216] If Probability of survival at 2 year=0.800
Raw Survival score at time 2 years=0.800
If Highest raw score in training data of probability of survival at time 2 years=0.90
If Lowest raw score in training data of probability of survival at time 2 years=0.15
Survival Score at 2 years=(0.80−0.15)/(0.90−0.15)=0.65/0.75=0.87
Determine Survival Scores for Progression free survival Survival Score(PFS) (primary indicator for success of Adjuvant radiotherapy) and Overall Survival Survival Score(OS) (secondary indicator for success of Adjuvant radiotherapy).
The output of the Radiotherapy Areas of Recurrence Model is the probability of recurrence of the tumor in different organs.
If none of the areas/organs have a probability of recurrence>0.50 then Survival Score(Rec)=0.10
If 1 area/organ have a probability of recurrence>0.50 then Survival Score(Rec)=0.05
If 2 or more areas/organs have a probability of recurrence>0.50 then Survival Score(Rec)=0.0
Survival Score (Adjuvant radiotherapy)=(0.60)(Survival Score(PFS)+(0.30)(Survival Score(OS)+Survival Score(Rec)
Survival Score Interpretation: The higher the patient's survival score, the better the prognosis.
2. Neoadjuvant radiotherapy Survival Score:

Survival Score

[0217] The output of Neoadjuvant Radiotherapy RECIST criteria-based Probability of tumor regression Model is the probability of tumor regression post neoadjuvant radiotherapy.
Survival Score (RECIST)=normalize raw survival score to range between 0.00 to 1.00

Example

[0218] If Survival probability (RECIST)=0.800
Raw Survival score (RECIST)=0.800
If Highest raw score in training data of probability of tumor regression=0.90
If Lowest raw score in training data of probability of tumor regression=0.15 Survival Score (RECIST)=(0.80−0.15)/(0.90−0.15)=0.65/0.75=0.87
Raw Survival Score (Progression free survival): Probability of survival at time t
Survival Score=normalize raw survival score to range 0.00 to 1.00.

Example

[0219] If Probability of survival at 2 year=0.800
Raw Survival score at time 2 years=0.800
If Highest raw score in training data of probability of survival at time 2 years=0.90
If Lowest raw score in training data of probability of survival at time 2 years=0.15
Survival Score at 2 years=(0.80−0.15)/(0.90−0.15)=0.65/0.75=0.87
Determine Survival Scores for Progression free survival Survival Score (PFS) (secondary indicator for success of Neoadjuvant radiotherapy) The output of Neoadjuvant Radiotherapy Symptom Improvement Model is the probability of symptom improvement post neoadjuvant radiotherapy. Survival Score (SI)=normalize raw survival score to range between 0.00 to 1.00

Example

[0220] If Survival probability (SI)=0.800
Raw Survival score (SI)=0.800
If Highest raw score in training data of probability of symptom improvement=0.90
If Lowest raw score in training data of probability of symptom improvement=0.15

Survival Score (SI)=(0.80−0.15)/(0.90−0.15)=0.65/0.75=0.87

[0221] The output of the Radiotherapy Areas of Recurrence Model is the probability of recurrence of the tumor in different organs.
If none of the areas/organs have a probability of recurrence>0.50 then Survival Score(Rec)=0.10
If 1 area/organ have a probability of recurrence>0.50 then Survival Score(Rec)=0.05
If 2 or more areas/organs have a probability of recurrence>0.50 then Survival Score(Rec)=0.0
Survival Score (Neoadjuvant radiotherapy)=(0.50)(Survival Score (RECIST))+(0.25)(Survival Score(PFS)+(0.15)(Survival Score (SI)+Survival Score (Rec)
Survival Score Interpretation: The higher the patient's survival score, the better the prognosis.
3. Radical radiotherapy Survival Score:
Survival Score Raw Survival Score: Probability of survival at time t
Survival Score=normalize raw survival score to range 0.00 to 1.00.

Example

[0222] If Probability of survival at 2 year=0.800
Raw Survival score at time 2 years=0.800
If Highest raw score in training data of probability of survival at time 2 years=0.90
If Lowest raw score in training data of probability of survival at time 2 years=0.15
Survival Score at 2 years=(0.80−0.15)/(0.90−0.15)=0.65/0.75=0.87
Determine Survival Scores for Progression free Survival Score(PFS) and Overall Survival Score(OS).
The output of Radical Radiotherapy RECIST criteria-based Probability of tumor regression Model is the probability of tumor regression post radical radiotherapy.
Survival Score (RECIST)=normalize raw survival score to range between 0.00 to 1.00

Example

[0223] If Survival probability (RECIST)=0.800
Raw Survival score (RECIST)=0.800
If Highest raw score in training data of probability of tumor regression=0.90
If Lowest raw score in training data of probability of tumor regression=0.15

Survival Score (RECIST)=(0.80−0.15)/(0.90−0.15)=0.65/0.75=0.87

[0224] The output of Radical Radiotherapy Symptom Improvement Model is the probability of symptom improvement post neoadjuvant radiotherapy.
Survival Score (SI)=normalize raw survival score to range between 0.00 to 1.00

Example

[0225] If Survival probability (SI)=0.800
Raw Survival score (SI)=0.800
If Highest raw score in training data of probability of symptom improvement=0.90
If Lowest raw score in training data of probability of symptom improvement=0.15

Survival Score (SI)=(0.80−0.15)/(0.90−0.15)=0.65/0.75=0.87

[0226] The output of the Radiotherapy Areas of Recurrence Model is the probability of recurrence of the tumor in different organs.
If none of the areas/organs have a probability of recurrence>0.50 then Survival Score(Rec)=0.10
If 1 area/organ have a probability of recurrence>0.50 then Survival Score(Rec)=0.05
If 2 or more areas/organs have a probability of recurrence>0.50 then Survival Score(Rec)=0.0
Survival Score (Radical radiotherapy)=(0.50)(Survival Score (OS)+(0.20)Survival Score (RECIST)+(0.125)(Survival Score (PFS))+(0.075)(Survival Score (SI)+Survival Score (Rec)
Survival Score Interpretation: The higher the patient's survival score, the better the prognosis.

4. Palliative Radiotherapy Survival Score:

[0227] The output of Palliative Radiotherapy Symptom Improvement Model is the probability of symptom improvement post Palliative radiotherapy.
Survival Score (SI)=normalize raw survival score to range between 0.00 to 1.00

Example

[0228] If Survival probability (SI)=0.800
Raw Survival score (SI)=0.800
If Highest raw score in training data of probability of symptom improvement=0.90
If Lowest raw score in training data of probability of symptom improvement=0.15

Survival Score (SI)=(0.80−0.15)/(0.90−0.15)=0.65/0.75=0.87

[0229] The output of Palliative Radiotherapy RECIST criteria-based Probability of tumor regression Model is the probability of tumor regression post palliative radiotherapy.
Survival Score (RECIST)=normalize raw survival score to range between 0.00 to 1.00

Example

[0230] If Survival probability (RECIST)=0.800
Raw Survival score (RECIST)=0.800
If Highest raw score in training data of probability of tumor regression=0.90
If Lowest raw score in training data of probability of tumor regression=0.15

Survival Score (RECIST)=(0.80−0.15)/(0.90−0.15)=0.65/0.75=0.87

Survival Score

[0231] Raw Survival Score: Probability of survival at time t
Survival Score=normalize raw survival score to range 0.00 to 1.00.

Example

[0232] If Probability of survival at 2 year=0.800
Raw Survival score at time 2 years=0.800
If Highest raw score in training data of probability of survival at time 2 years=0.90
If Lowest raw score in training data of probability of survival at time 2 years=0.15
Survival Score at 2 years=(0.80−0.15)/(0.90−0.15)=0.65/0.75=0.87
Determine Survival Scores for Progression free survival Survival Score(PFS) and Overall Survival Survival Score(OS).
The output of the Radiotherapy Areas of Recurrence Model is the probability of recurrence of the tumor in different organs.
If none of the areas/organs have a probability of recurrence>0.50 then Survival Score(Rec)=0.10
If 1 area/organ have a probability of recurrence>0.50 then Survival Score(Rec)=0.05
If 2 or more areas/organs have a probability of recurrence>0.50 then Survival Score(Rec)=0.0

Survival Score (Palliative Radiotherapy)=(0.50)(Survival Score(SI)+(0.20)(Survival Score(RECIST)+(0.125)(Survival Score (PFS))+(0.075)(Survival Score(OS))+Survival Score (Rec)

[0233] Survival Score Interpretation: The higher the patient's survival score, the better the prognosis.

Adverse Event Score:

[0234] The output of the Radiotherapy side effects grade model is the probability of different side affects and the grade of each
If highest AE grade is Grade 5 (death)->then AE Score=1.0
If highest AE grade is Grade 4 (Life threatening)->then AE score=0.8
Else Algorithm to calculate AE score is as follows:
Take grades of 5 predicted adverse events with highest grade
Multiply probability of each adverse event with 0.15 if it is grade 3, 0.1 if grade 2 and 0.05 if grade 1.
AE(Grade)=Sum of 5 products described above

Example

[0235] Nausea Grade 3 with probability 0.8=0.15×0.8=0.12
Constipation Grade 2 with probability 0.5=0.1×0.5=0.05
Cough Grade 1 with probability 0.9=0.05×0.9=0.045
No other side effects

AE(Grade)=0.12+0.05+0.045+0+0=0.215

[0236] The output of Radiotherapy Side effects time to resolution model is the probability of a side effect resolving at time t
Raw Score: Probability of AE resolution at time t
AE resolution Score=normalize raw score to range 0.00 to 1.00.

Example

[0237] If Probability of AE resolution at 1 month=0.800
Raw AE resolution score at time 1 month=0.800
If Highest raw score in training data of probability of AE resolution at time 1 month=0.90
If Lowest raw score in training data of probability of AE resolution at time 1 month=0.15
Raw AE resolution Score at 1 month=(0.80−0.15)/(0.90−0.15)=0.65/0.75=0.87
AE(Res)=1— (the average of 5 highest AE resolution scores at 1 month) The output of the Radiotherapy non-resolving side effects model is probability of resolution of side effects post radiotherapy.
If all of the AE have a probability of resolution>0.50 then AE (Non Resolution)=0.00
If 1 SE has a probability of resolution<0.50 then AE (Non Resolution)=0.05
If 2 or more SE have a probability of resolution<0.50 then AE (Non Resolution)=0.10

AE Score=AE(grade)+(0.15)AE(Res)+AE (Non Resolution)

[0238] AE score interpretation: The lower the AE score, the better the Quality of Life (QoL) of the patient

[0239] Once the data is entered into the system, then the process of score generation shall initiate. The basic steps involved include the following

[0240] All the details shall be entered into the respective fields. The values are then classified and given a unique value based on the relative importance of the same. Weighted averages from literature/past experience from center and feedback loop from clinician/radiation oncologist were considered as next level of inputs, which shall be going through the ANN (artificial Neural network system).

[0241] While considering the all above parameters as mentioned in the embodiment, we assume the following [0242] a. Artificial neural network (ANN) using the clinical data including patient visit data, admission data, adverse event data, emergency department visit data, family history, medical history, survival data, treatment data and treatment response data and genomic data including gene expression and gene mutation data, radiation planning details, beam strength, contour and other shall go as inputs. The trained ANN model will predict the response rates/relapse probability and survival probability at time t for the patient. [0243] a. Survival Score [0244] b. Raw Survival Score: Probability of survival at time t [0245] c. Survival Score=normalize raw survival score to range 0.00 to 1.00. [0246] d. Similarly, the probability of response is assessed in terms of [0247] i. Magnitude of response (regression from baseline) [0248] ii. Time for maximum response [0249] iii. Score at various permutations (ex—if we increase dose—then what shall be response, if we increase oxygen concentration, if we give more fractions etc) [0250] iv. Durability of response [0251] v. Probability of response failure [0252] vi. And other desired variables
Similarly, the probability of response is assessed in terms of [0253] i. Probability of normal organ damage [0254] ii. Time for maximum toxicity/highest grade (AE) [0255] iii. Intensity of maximum toxicity (grade of AE) [0256] iv. Duration of toxicity [0257] v. Time for resolution [0258] vi. Probability of residual/long term toxicity [0259] vii. Score at various permutations (ex—if we reduce dose-then to what extent we can reduce the toxicity etc. what duration of break shall benefit the recovery of organ)

[0260] The System gives a customized survival prediction and AE prediction score to each patient taking into account lot of the clinical and genomic data of the patients including treatment data.