Bacterial compositions for prophylaxis and treatment of degenerative disease

Abstract

The disclosure provides an oral composition for reducing serum cholesterol, serum lipids, body fat, or atherogenic index or for prophylaxis or treatment of atherosclerosis, cardiovascular or cerebrovascular diseases, comprising a highly bsh active bacteria, isolate or supernatant thereof; wherein the highly bsh active bacteria degrades >50 mol glycodeoxycholic acid (GDCA)/gram/hour and >2 mol taurodeoxycholic acid (TDCA)/gram/hour when measured over 1 hour and 5 hours, respectively, or degrades >65 mol GDCA/g/hr and >7 mol TDCA/g/hr when measured over 30 minutes.

Claims

1. A bile salt hydrolase (BSH) active bacteria, comprising a first BSH activity that results from growth in an optimized plurality of growth medium components, wherein said first BSH activity is between 6.1 and 113.6 fold higher than a second BSH activity that results from the growth of said BSH active bacteria in de Man, Rogosa, Sharpe (MRS) medium.

2. The BSH active bacteria of claim 1, wherein said first BSH activity is between 8.9 and 113.6 fold higher than said second BSH activity.

3. The BSH active bacteria of claim 2, wherein said first BSH activity is between 39.7 and 113.6 fold higher than said second BSH activity.

4. The highly BSH active bacteria of claim 3, wherein said first BSH activity is between 84.8 and 113.6 fold higher than said second BSH activity.

5. An oral composition, comprising the BSH active bacteria of claim 2; wherein said first BSH activity degrades >2253 mol glycodeoxycholic acid (GDCA)/gram wet bacterial pellet/hr when measured over 30 minutes, wherein said high BSH activity is stable so that at least about 69.2% of said BSH activity is retained when said highly BSH active bacteria are stored for a time period of at least 3 weeks.

6. The oral composition of claim 5, wherein said first BSH activity degrades >15000 mol GDCA/g/hr when measured over 30 minutes.

7. The BSH active bacteria of claim 1, wherein the BSH active bacteria is Lactobacillus, Bifidobacteria, Pediococcus, Streptococcus, Enterococcus, or Leuconostoc.

8. The BSH active bacteria of claim 7, wherein the bacteria is Lactobacillus.

9. The BSH active bacteria of claim 8, wherein the Lactobacillus is Lactobacillus reuteri.

10. The BSH active bacteria of claim 9, wherein the Lactobacillus reuteri is Lactobacillus reuteri (NCIMB 701359), Lactobacillus reuteri (NCIMB 701089), Lactobacillus reuteri (ATCC 55148), Lactobacillus reuteri (ATCC 23272), Lactobacillus reuteri (NCIMB 702655), Lactobacillus reuteri (LMG 18238), Lactobacillus reuteri (CCUG 32271), Lactobacillus reuteri (CCUG 32305), Lactobacillus reuteri (CCUG 37470), Lactobacillus reuteri (CCUG 44001) or Lactobacillus reuteri (CCUG 44144).

11. The BSH active bacteria of claim 10, wherein the Lactobacillus reuteri is Lactobacillus reuteri (NCIMB 701359).

12. The oral composition of claim 6, wherein the bacteria is Lactobacillus.

13. The oral composition of claim 12, wherein the Lactobacillus is Lactobacillus reuteri.

14. The oral composition of claim 13, wherein the Lactobacillus reuteri is Lactobacillus reuteri (NCIMB 701359).

15. The BSH active bacteria of claim 1, wherein said optimized plurality of growth medium components comprises: a. a carbon source comprising maltose or a combination of inulin and glucose; and b. a nitrogen source comprising yeast extract, malt extract, and peptone No. 3; wherein said growth medium components are in a growth medium having a pH of 5-7.

16. The BSH active bacteria of claim 15, wherein the optimized plurality of growth medium components further comprises a reducing agent.

17. The oral composition of claim 16, wherein the reducing agent is cysteine.

18. The BSH active bacteria of claim 1, wherein the bacteria are immobilized in a polymer or are encapsulated in polymeric semi permeable microcapsules or nanocapsules.

19. The oral composition of claim 3, wherein said first BSH activity has been stabilized by lyophilizing, heat drying, spray drying, or flash freezing said BSH active bacteria following said growth in said plurality of growth medium components.

20. The oral composition of claim 19, wherein said BSH active bacteria are lyophilized with lyoprotectants comprising (a) 0.2 to 10% maltodextrin and 0.05 to 0.33% yeast extract, (b) 0.05 to 10% inulin and 0.05 to 0.33% yeast extract, (c) 0.05 to 10% inulin, (d) 1M Trehalose, or (e) 1M trehalose and 0.33% yeast extract.

21. The oral composition of claim 3, wherein said first BSH activity has been stabilized by flash freezing said BSH active bacteria in a cryoprotectant solution comprising a final concentration of (a) 0.2 to 10% maltodextrin and 0.05 to 0.33% yeast extract, (b) 0.05 to 10% inulin, (c) 0.5M Trehalose, (d) 0.5M sucrose, (e) 0.5M lactose, (f) 0.5M maltose, or (g) 50-99.99% spent media.

22. The oral composition of claim 5, wherein the oral composition further comprises a triglyceride lowering agent, an agent for increasing HDL or limiting HDL decrease, a cholesterol lowering agent, an agent for preserving BSH activity, an agent for modulating adipokines or hormones of obesity, a hypoglycemic agent, a therapeutic for reducing the pro-inflammatory cytokines IL-la/B, IL-2, IL-15, IL-3, IL-6, IL-8, IL-12, IL-17, IFN-gamma, TNF-alpha, or for increasing the level of the anti-inflammatory cytokines IL-1ra, IL-9, IL-10, IL-11, vitamin B12, conjugated linoleic acid (CLA), reuterin, or reutericyclin.

Description

BRIEF DESCRIPTION OF THE DRAWINGS

(1) Embodiments of the disclosure will now be described in relation to the drawings in which:

(2) FIG. 1 shows deconjugation of TDCA by free Lactobacillus reuteri strains (ATCC 53608, ATCC 53609, ATCC 55148, ATCC 55739, and NCIMB 701359) over time. The experiment was performed in triplicate and error bars represent one standard deviation from the mean.

(3) FIG. 2 shows deconjugation of GDCA by free Lactobacillus reuteri strains (ATCC 53608, ATCC 53609, ATCC 55148, ATCC 55739, and NCIMB 701359) over time. The experiment was performed in triplicate and error bars represent one standard deviation from the mean.

(4) FIG. 3 shows deconjugation of TDCA by free Lactobacillus reuteri and Lactobacillus fermentum strains over time. The experiment was performed in triplicate and error bars represent one standard deviation from the mean.

(5) FIG. 4 shows deconjugation of GDCA by free Lactobacillus reuteri strains (LabMet, NCIMB 701359) and Lactobacillus fermentum (ATCC 11976) over time. The experiment was performed in triplicate and error bars represent one standard deviation from the mean.

(6) FIG. 5 shows deconjugation of TDCA by free Lactobacillus reuteri strains (LMG 9213, NCIMB 11951, ATCC 23272, NCIMB 702656, NCIMB 701359, and NCIMB 701089) over time. The experiment was performed in triplicate and error bars represent one standard deviation from the mean.

(7) FIG. 6 shows deconjugation of GDCA by free Lactobacillus reuteri strains (LMG 9213, NCIMB 11951, ATCC 23272, NCIMB 702656, NCIMB 701359, and NCIMB 701089) over time. The experiment was performed in triplicate and error bars represent one standard deviation from the mean.

(8) FIG. 7 shows the size of precipitation zone of 3 bsh active Lactobacillus reuteri: Lr010: Lactobacillus reuteri (LabMet), Lr052: Lactobacillus reuteri (NCIMB 701089), and Lr050: Lactobacillus reuteri (NCIMB 701359).

(9) FIG. 8 shows deconjugation of TDCA by free Lactobacillus reuteri strains (ATCC 55148, ATCC 55739, NCIMB 701359, NCIMB 701089, NCIMB 702655, LMG 18238, LMG 22877, LMG 22878, LMG 22879, CCUG 32305, CCUG 37470, CCUG 44001, CCUG 44144, CCUG 47824) over time. The experiment was performed in triplicate and error bars represent one standard deviation from the mean.

(10) FIG. 9 shows deconjugation of GDCA by free Lactobacillus reuteri strains (ATCC 55148, ATCC 55739, NCIMB 701359, NCIMB 701089, NCIMB 702655, LMG 18238, LMG 22877, LMG 22878, LMG 22879, CCUG 32305, CCUG 37470, CCUG 44001, CCUG 44144, CCUG 47824) over time. The experiment was performed in triplicate and error bars represent one standard deviation from the mean.

(11) FIG. 10 shows a representative set of microcapsule morphology photomicrographs using different lyoprotectant conditions at 7:3 microcapsule to lyoprotectant for saline, 1M trehalose, and 10% skim milk used for lyophilisation and rehydration of microencapsulated Lactobacillus.

(12) FIG. 11 shows BSH activity of L. reuteri NCIMB 701359 after fermentation in optimized media with and without cysteine supplementation (0.01%).

(13) FIG. 12 shows BSH activity of L. reuteri NCIMB 701359 after flash freezing in optimized media with and without cryoprotectant supplementation of 7.5% maltodextrin and 0.05% cysteine.

(14) FIG. 13 shows BSH activity of microencapsulated L. reuteri NCIMB 701359 (frozen and thawed) after flash freezing in cryoprotectant solutions with and without cysteine supplementation (0.025%).

DETAILED DESCRIPTION

(15) The present inventors have shown that highly bsh active bacteria provide an improved oral composition for reducing serum cholesterol, serum lipids, body fat, and atherogenic index and for prophylaxis and treatment of atherosclerosis, cardiovascular and cerebrovascular diseases.

(16) Compositions

(17) Accordingly, there is provided an oral composition for reducing serum cholesterol, serum lipids, body fat, or atherogenic index or for prophylaxis or treatment of atherosclerosis, cardiovascular or cerebrovascular diseases, the composition comprising a highly bsh active bacteria, isolate or supernatant thereof; wherein the highly bsh active bacteria degrades >50 mol glycodeoxycholic acid (GDCA)/gram/hour and >2 mol taurodeoxycholic acid (TDCA)/gram/hour when measured over 1 hour and 5 hours, respectively; or degrades >65 mol GDCA/g/hr and >7 mol TDCA/g/hr when measured over 30 minutes. In one embodiment, the highly bsh active bacteria degrades >300 mol GDCA/g/hr and >40 mol TDCA/g/hr when measured over 30 minutes. In another embodiment, the highly bsh active bacteria degrades >2000 mol GDCA/g/hr and >500 mol TDCA/g/hr when measured over 30 minutes. In yet another embodiment, the highly bsh active bacteria degrades >15000 mol GDCA/g/hr and >2000 mol TDCA/g/hr when measured over 30 minutes.

(18) In one embodiment, the composition further comprises a carrier.

(19) Highly bsh active bacteria as used herein refers to bacteria that degrade >50 mol GDCA/gram/hour and >2 mol TDCA/gram/hour when measured over 1 hour and 5 hours, respectively; or degrade >65 mol GDCA/g/hr and >7 mol TDCA/g/hr when measured over 30 minutes, optionally >300 mol GDCA/g/hr and >40 mol TDCA/g/hr when measured over 30 minutes, or >2000 mol GDCA/g/hr and >500 mol TDCA/g/hr when measured over 30 minutes or >15000 mol GDCA/g/hr and >2000 mol TDCA/g/hr when measured over 30 minutes and are readily identified by a person skilled in the art based on the methods described in the Examples. In one embodiment, the GDCA and TDCA degradation is measured by HPLC. Determination of bile salts by HPLC is described in Scalia 1988 and Jones et al. 2003.

(20) The term isolate as used herein refers to a separated, isolated, or fractionated portion of the cell culture or fermentation product which may be more pure or more active than the crude sample. The term supernatant as used herein refers to the liquid overlying the material deposited by settling, precipitating or centrifuging.

(21) In an embodiment, the highly bsh active bacteria are live bacteria. The term live bacteria as used herein refers to a biomass of nutrient metabolizing and waste excreting bacteria. In one embodiment, the live bacteria are probiotic bacteria. The term probiotic bacteria as used herein refers to live microorganisms which when delivered in adequate amounts confer a health benefit to the host.

(22) The highly bsh active bacteria is optionally Lactobacillus, Bifidobacteria, Pediococcus, Streptococcus, Enterococcus, or Leuconostoc.

(23) In one embodiment, the Lactobacillus is Lactobacillus reuteri, optionally, Lactobacillus reuteri (NCIMB 701359), Lactobacillus reuteri (NCIMB 701089), Lactobacillus reuteri (ATCC 55148), Lactobacillus reuteri (ATCC 23272), Lactobacillus reuteri (NCIMB 702655), Lactobacillus reuteri (LMG 18238), Lactobacillus reuteri (CCUG 32271), Lactobacillus reuteri (CCUG 32305), Lactobacillus reuteri (CCUG 37470), Lactobacillus reuteri (CCUG 44001) or Lactobacillus reuteri (CCUG 44144).

(24) In another embodiment, the Lactobacillus reuteri adheres to the gastrointestinal epithelial cells, competes for adhesion, or inhibits the binding of other bacteria due to cell surface proteins.

(25) In an embodiment, the concentration of bacteria in the oral compositions described herein is 10.sup.6-10.sup.12 colony forming units (CFU)/gram, optionally 10.sup.8-10.sup.12 CFU/gram. In another embodiment, the composition provided herein comprises 10.sup.6-10.sup.14 CFU, optionally 10.sup.8-10.sup.13 CFU.

(26) The term bsh or bile salt hydrolase as used herein refers to an enzyme capable of hydrolyzing bile salts produced by the bacteria.

(27) The highly bsh active bacteria can be grown under fermentation conditions that improve biomass production and bsh activity. In one embodiment, the fermentation conditions comprise inoculation in medium comprising a carbon source, and a nitrogen source and having a pH of 4 to 7 and a harvest time of 6 to 24 hours. In a particular embodiment, the pH of the fermentation conditions is 5. In yet another embodiment, the harvest time is 8 to 16 hours.

(28) In one embodiment, the carbon source comprises maltose, sucrose, dextrin, a combination of sorbitol and glucose or a combination of inulin and glucose. In a particular embodiment, the carbon source is maltose. In one embodiment, the carbon sources are added to a final concentration of 2%, for example, if inulin and glucose are used, 1% of each are added to a final concentration of 2%.

(29) In another embodiment, the nitrogen source comprises (i) yeast extract and malt extract, yeast extract and beef extract, or casein hydrolysate and malt extract; and (ii) peptone or tryptone. In yet another embodiment, the nitrogen source comprises cysteine. The peptone may be any peptone, including without limitation, peptone no. 3, fish peptone, soy peptone, proteose peptone and casein peptone. In a particular embodiment, the peptone is peptone no. 3. In one embodiment, the nitrogen source is added to a total of 2.5%, for example, if a peptone, yeast and malt extract source is used, 1% peptone, 0.5% yeast extract and 1% malt extract are added to a final concentration of 2.5%. In another embodiment, beef extract substitutes for malt extract and casein substitutes for either the peptone or yeast extract. In an embodiment, the fermentation conditions further comprise a reducing agent, such as cysteine. In one embodiment 0.01 to 0.1% cysteine is added, optionally 0.01% or 0.025% or 0.05%. Cysteine acts as both a nitrogen source and a reducing agent. As a reducing agent, cysteine helps lower the redox potential of the environment and provides improved anaerobic conditions for the bacteria and enzyme. As an amino acid, cysteine is also an essential nitrogen source for certain bacteria. In the optimal media, due to its low concentration in the media and several other complex nitrogen sources being present, its role is more likely as a reducing agent. However, it is also a source of nitrogen for the bacteria. In terms of the reducing capability of cysteine, the thiol group is of most importance. Other thiol based reducing agents useful in fermentation, lyoprotection and cryoprotection include, without limitation, sodium thioglycolate, glutathione, sodium sulfide, and DTT (dithiothreitol).

(30) In one embodiment, the highly bsh active bacteria are free bacteria. The term free bacteria as used herein refers to bacteria that are not immobilized in a polymer or encapsulated by artificial cell microencapsulation.

(31) In another embodiment, the highly bsh active bacteria are contained or immobilized in a polymer, optionally a natural polymer. Natural polymers include, without limitation, alginate, chitosan, agarose, pectin, agaropectin, genipin, and cellulose. In an embodiment, the highly bsh active bacteria are immobilized on a film.

(32) In yet another embodiment, the highly bsh active bacteria are encapsulated. Encapsulation is a term used to include the methods of macroencapsulation, microencapsulation and nanoencapsulation. The terms microencapsulation and nanoencapsulation refer to a subclass of encapsulation, where small, micro- or nano-encapsulated capsules are produced. Encapsulation and microencapsulation techniques are known in the art. Microcapsules are small spherical containers or coated tissues in the 1-999 m range and nanocapsules range from 1-999 nm, whereas macrocapsules are larger flat-sheet or hollow-fiber membraned vessels. Macro-, micro- and nano-capsules must contain a cellular environment that is able to support cellular metabolism and proliferation, as the cells they accommodate provide the capsule functionality.

(33) Artificial cell microencapsulation or nanoencapsulation is a technique used to encapsulate biologically active materials in specialized ultra thin semi-permeable polymer membranes (see e.g., Chang and Prakash, 1997; Chang, 1964). Methods for preparing artificial cells have been well documented in the pertinent art. Artificial cell membranes are optionally selected or designed for each specific therapeutic device by one of skill in the art, because one may engineer several different membranes for artificial cell preparations with required membrane properties for a desired application. The use of different membranes allows for variation in permeability, mass transfer, mechanical stability, buffering capability, biocompatibility, and other characteristics. A balance has to be maintained among the physical properties of capsule membranes so as to support the entrapped cell's survival.

(34) Microcapsules can be prepared for the bacteria of the invention using techniques as in US Publication No. 2007-0116671 to Prakash and Jones, which is incorporated herein by reference.

(35) The mass transport properties of a membrane are critical since the influx rate of molecules, essential for cell survival, and the outflow rate of metabolic waste ultimately determines the viability of entrapped cells. Any barriers can be potentially applied to enzyme applications. Ordinarily the desired capsule permeability is determined by the molecular weight cut-off (MWCO), and is application dependent. The MWCO is the maximum molecular weight of a molecule that is allowed passage through the pores of the capsule membrane (Uludag et al. (2000) Adv. Drug Deliv. Rev. 42:29-64). For transplantation, the MWCO must be high enough to allow passage of nutrients, but low enough to reject antibodies and other immune system molecules. The MWCO range is optionally 3000 D to 950,000 D (Chang and Prakash, 1998). The MWCO of orally delivered microcapsules must allow for the passage of unwanted metabolites from the plasma into the microcapsule, and then must either facilitate the subsequent removal of the altered molecule or provide for its storage (Uludag et al., 2000). For cells of the present disclosure that are to be administered orally, one optionally uses a retainer that allows passage of nutrients, but blocks antibodies and other immune molecules, for example a semi-permeable membrane having a MWCO 3000 D to 950,000 D (Chang and Prakash, 1998). Alternatively, the lower end of the range may be about: 2000 D, 4000 D, 5000 D or 10,000 D and the higher end of the range may be about: 900,000 D, 750,000 D or 500,000 D.

(36) The most common type of membrane used for cell therapy is the single alginate based polymer membrane; however, several other substances may be used such as various proteins, polyhemoglobin, and lipids (Uludag et al., 2000; Prakash and Jones, 2002). Yet another approach for membrane composition is to use a biodegradable synthetic polymer such as polylactide, polyglycolic acid, and polyanhydride. Commonly used membranes include hollow fiber Membranes, alginate-polylysine-alginate (APA) membrane, cellulose nitrate, polyamide, lipid-complexed polymer, and lipid vesicles. Established and promising polymers for live cell encapsulation and enzyme encapsulation include alginate-polylysine-alginate (APA), alginate-polymethylene-co-guanidine-alginate (A-PMCG-A), hydroxymethylacrylate-methyl methacrylate (HEMA-MMA), Multilayered HEMA-MMA-MAA, polyacrylonitrilevinylchloride (PAN-PVC), acrylonitirle/sodium methallylsuflonate (AN-69), polyethylene glycol/poly pentamethylcyclopentasiloxane/polydimethylsiloxane (PEG/PD.sub.5/PDMS), poly N,N-dimethyl acrylamide (PDMAAm), Siliceous encapsulates, and cellulose sulphate/sodium alginate/polymethylene-co-guanidine (CS/A/PMCG). Other materials that are useful include, without limitation, cellulose acetate phthalate, calcium alginate and k-carrageenan-Locust bean gum gel beads, gellan-xanthan beads, poly(lactide-co-glycolides), carageenan, starch polyanhydrides, starch polymethacrylates, polyamino acids, enteric coating polymers.

(37) The design of a membrane, intended for use in oral live cell therapy, must take into consideration several primary factors so as to minimize microbial death and maximize therapeutic effectiveness. To assure their efficacy, artificially encapsulated cells intended for oral administration must be designed to protect their living cargo against both the acidic environment of the stomach and immunoglobulin released by the intestinal immune response.

(38) A useful composition is the encapsulation of calcium alginate beads with poly-L-lysine (PLL) forming alginate-poly-L-lysine-alginate (APA) microcapsules. In the APA membrane microcapsule, alginate forms the core and matrix for the cell and PLL binds to the alginate core. Binding of PLL to alginate is the result of numerous long-chain alkyl-amino groups within PLL that extend from the polyamide backbone in a number of directions and interact with various alginate molecules, through electrostatic interactions. The resulting cross-linkage produces a stable complex membrane that reduces the porosity of the alginate membrane and forms an immunoprotective barrier.

(39) Alternatively, Alginate/Poly-l-lysine/Pectin/Poly-l-lysine/Alginate (APPPA), Alginate/Poly-l-lysine/Pectin/Poly-l-lysine/Pectin (APPPP), and Alginate/Poly-L-lysine/Chitosan/Poly-l-lysine/Alginate (APCPA) membranes are used for encapsulation. These multi-layer membrane compositions perform well in GI stability tests, providing for increased resistance to complete dissolution in water, dilute acids and base, as well as in the presence of ion chelators, while allowing for more precise control over membrane permeability.

(40) There are various methods available for preparing artificial cells containing live cells for therapy. For example, for preparation of the classic alginate-polylysine-alginate (APA) membrane, the live cells, such as bacterial cells, are suspended in a matrix of the natural polymer alginate (1.5%). The viscous polymer-bacterial suspension is passed through a 23-gauge needle using a syringe pump. Sterile compressed air, passed through a 16-gauge coaxial needle, is then used to shear the droplets coming out of the tip of the 23-gauge needle. The droplets are allowed to gel for 15 minutes in a gently stirred ice-cold solution of solidifying chemicals, such as CaCl.sub.2 (1.4%). After gelation in the CaCl.sub.2, the beads are then washed with HEPES (0.05% in HEPES, pH 7.20), coated with polylysine (0.1% for 10 min) and washed again in HEPES (0.05% in HEPES, pH 7.20). The resultant capsules are then coated by reaction with alginate (0.1% for 10 min) and washed with appropriate chemicals to dissolve their inner core content. For this step a 3.00% citrate bath (3.00% in 1:1 HEPES-buffer saline, pH 7.20) is often used. The microcapsules formed can then be stored at 4 C. in minimal solution (10% cell nutrient to 90% water).

(41) Accordingly, in one embodiment, the highly bsh active bacteria are encapsulated in polymeric semi permeable microcapsules (1-999 m) or nanocapsules (1-999 nm). In one embodiment, polymeric semi permeable microcapsules or nanocapsule comprise Alginate/Poly-l-lysine/Alginate (APA), Alginate/Chitosan/Alginate (ACA) or Alginate/Genipin/Alginate (AGA) membranes. In another embodiment, the microcapsule or nanocapsule comprises Alginate/Poly-l-lysine/Pectin/Poly-l-lysine/Alginate (APPPA), Alginate/Poly-l-lysine/Pectin/Poly-l-lysine/Pectin (APPPP), Alginate/Poly-L-lysine/Chitosan/Poly-l-lysine/Alginate (APCPA), alginate-polymethylene-co-guanidine-alginate (A-PMCG-A), hydroxymethylacrylate-methyl methacrylate (HEMA-MMA), Multilayered HEMA-MMA-MAA, polyacrylonitrilevinylchloride (PAN-PVC), acrylonitirle/sodium methallylsuflonate (AN-69), polyethylene glycol/poly pentamethylcyclopentasiloxane/polydimethylsiloxane (PEG/PD5/PDMS) or poly N,N-dimethyl acrylamide (PDMAAm) membranes. In yet another embodiment, the microcapsule or nanocapsule comprises hollow fiber, cellulose nitrate, polyamide, lipid-complexed polymer, a lipid vesicle a siliceous encapsulate, cellulose sulphate/sodium alginate/polymethylene-co-guanidine (CS/NPMCG), cellulose acetate phthalate, calcium alginate, k-carrageenan-Locust bean gum gel beads, gellan-xanthan beads, poly(lactide-co-glycolides), carageenan, starch polyanhydrides, starch polymethacrylates, polyamino acids or enteric coating polymers.

(42) In a further embodiment, the polymeric microcapsules or nanocapsules are resistant to gastro-intestinal conditions, such as pH 1-8 and/or bile [1-30 mmol]).

(43) The oral compositions disclosed herein are optionally lyophilized, heat dried, or spray dried. Alternatively, the oral compositions are optionally prepared wet.

(44) In an embodiment, the oral compositions described herein are lyophilized with lyoprotectants to ensure viability and improved bsh activity over time. Typical lyoprotectants include, without limitation, a final concentration of 0.2% to 10% maltodextrin and 0.05% to 0.33% yeast extract or 0.05-10%, optionally 0.05-2.5% inulin and 0.05 to 0.33% yeast extract. In one embodiment, the lyoprotectants comprise a final concentration of 2-4% maltodextrin and 0.1% yeast extract, 0.3% inulin and 0.1% yeast extract, or 0.05-10%, optionally 0.3% inulin. In another embodiment, the lyoprotectants comprise 0.2% to 10%, optionally 2-4%, maltodextrin and 0.01% to 0.1%, optionally 0.025 to 0.05%, cysteine. In yet another embodiment, the lyoprotectants comprise 0.2% to 10% maltodextrin, 0.01 to 0.1% cysteine and 0.05% to 0.33% yeast extract. In yet a further embodiment, the lyoprotectants comprise 0.05% to 10% inulin and 0.01 to 0.1% cysteine.

(45) In another embodiment, the oral compositions described herein are stored in liquid to ensure viability and improved bsh activity. Typical liquid storage conditions include, without limitation, a final concentration of preservative solution comprising 2.5-10% growth media (as described herein), 50-99.99% yogurt or other fermented milk, 50-99.99% culture supernatant or 5% MRS solution.

(46) In yet another embodiment, the oral compositions described herein are flash frozen to ensure viability and improved bsh activity. Typical flash freezing conditions include, without limitation, a final concentration of cryoprotectant solution comprising 0.2-10% maltodextrin, optionally 1-3%, maltodextrin and 0.05 to 0.33% yeast extract, optionally 0.1-0.2% yeast extract, 0.05 to 10% inulin, optionally at least 0.2% inulin, 0.5M Trehalose, 0.5M sucrose or fructose, 0.5M lactose, 0.5M maltose or 50-99.99%, optionally 50% spent media. In another embodiment, the oral composition is flash frozen in a final cryoprotectant solution comprising 0.2 to 10%, optionally 2-4% maltodextrin, 0.01 to 0.1%, optionally 0.025 to 0.05%, cysteine and optionally, 0.05 to 0.33% yeast extract. In yet a further embodiment, the oral composition is flash frozen in a final cryoprotectant solution comprising 0.05% to 10% inulin and 0.01 to 0.1% cysteine.

(47) The term carrier as used herein refers to an acceptable carrier that facilitates administration to the subject. For example, an acceptable carrier that facilitates oral administration includes, without limitation, a supplement, food product, beverage, functional food or nutraceutical, or excipient. Nutraceutical means a product isolated or purified from foods (or sources used to make food, such as plants, animals or other organisms) that is thought to have a health benefit, such as a medicinal, physiological or prophylactic effect. Functional Food Product means it is food, is consumed as part of a diet and has health benefits, such as medicinal, physiological or prophylactic benefits beyond basic nutritional function of supplying nutrients.

(48) In another embodiment, the carrier comprises a capsule, pill, gel capsule, liquid, or dissolvable film.

(49) The oral compositions disclosed herein for reducing serum cholesterol, serum lipids, body fat, or atherogenic index or for prophylaxis or treatment of atherosclerosis, cardiovascular or cerebrovascular diseases optionally further comprise other agents or therapeutics for such indications. Accordingly, in one embodiment, the oral composition further comprises a triglyceride lowering agent, optionally, squalene synthase inhibitors, microsomal triglyceride transfer protein inhibitors, statins, bile acid sequestrants, cholesterol absorption inhibitors, fibrates and other PPAR alpha agonists, dual PPAR agonists, lipase inhibitors, protein tyrosine phosphatase 1B inhibitors, pancreatic peptide YY.sub.3-36, recombinant and other cannabinoid receptor antagonists or 5-HT2c agonists, such as lorcaserin. In another embodiment, the composition further comprises an agent for increasing HDL or limiting HDL decrease, optionally, statins, bile acid sequestrants, cholesterol absorption inhibitors, fibrates and other PPAR alpha agonists, dual PPAR agonists, lipase inhibitors, protein tyrosine phosphatase 1B inhibitors, pancreatic peptide YY.sub.3-36, recombinant and other cannabinoid receptor antagonists, or 5-HT2c agonists, such as lorcaserin. In yet another embodiment, the oral composition further comprises a cholesterol lowering agent, optionally, a bile acid sequestrant (BAS), a statin, ezetimibe, alpha-Linoleitic acid, omega-3,6,9, eicosapentaenoic acid (EPA), docosahexaenoic acid (DHA), fibrates, soluble fibre, polyphenol, gama-oryzanol hesperetin metabolite, phytochemical, other probiotic, psyllium, phytosterol, phytostanol, vitamin, antioxidant or antibiotic. The statin may be selected from the group consisting of Lovastatin, Pravastatin, Zocor, Fluvastatin, Mevastatin, Pitavastatin, Cerivastatin, Simvastatin, Rosuvastatin and Atorvastatin. The BAS may be colestyramine, colestipol or colesevelam. The fibrate may be clofibrate, bezafibrate, gemfibrozil or fenofibrate. In a further embodiment, the oral composition further comprises an agent for preserving bsh activity, optionally, inulin, trealose, maltodextran, yeast extract, polyethylene glycol, glycerol, lipid, emulsified fat, a dairy product, glucose, fructose, sucrose, a poly sugar, anhydrobiosis, a polycosanol, polyethlylene glycol (PEG), a plant sterol, a plant stanol, or an omega fatty acid. The polycosanol may be octacosanol, triacontanol, behenyl alcohol, lignoceryl alcohol, ceryl alcohol, 1-heptacosanol, 1-nonacosanol, 1-dotriacontanol, or geddyl alcohol. In yet a further embodiment, the oral composition further comprises an agent for modulating adipokines or hormones of obesity, optionally, leptin, ghrelin, resistin, adiponectin, chemerin, Il-6, visfatin, retinol binding protein 4 or plasminogen activator inhibitor-1. In yet another further embodiment, the oral composition further comprises a hypoglycemic agent, optionally, Metformin, Rosiglitazone, Pioglitazone, Glyburide, Gliclazide, Glimepiride, Glipizidebile Glibenclamide, Acarbose, Miglitol, Voglibose, Sitagliptin, Nateglinide, Repaglinide, Mitiglinide, Alogliptin, Saxagliptin, Vildagliptin and Dapagliflozin. In an even further embodiment, the oral composition further comprises a therapeutic for reducing the pro-inflammatory cytokines IL-1/, IL-2, IL-15, IL-3, IL-6, IL-8, IL-12, IL-17, IFN-gamma, TNF-alpha, or for increasing the level of the anti-inflammatory cytokines IL-1ra, IL-9, IL-10, IL-11.

(50) In yet another embodiment, the oral composition further comprises vitamin B12. In a further embodiment, the oral composition further comprises conjugated linoleic acid (CLA). In yet a further embodiment, the oral composition further comprises reuterin and/or reutericyclin.

(51) Methods and Uses

(52) The disclosure includes methods and uses of the oral compositions disclosed herein. In one embodiment, there is provided a method of therapy comprising administration of an oral composition disclosed herein to an animal in need thereof. Also provided is a use of an oral composition disclosed herein for therapy of an animal. Further provided is a use of an oral composition disclosed herein in the preparation of a medicament for therapy. Also provided is the oral composition disclosed herein for use in therapy.

(53) The compositions described herein are useful for lowering serum cholesterol of an animal in need thereof. Accordingly, in one aspect, the present disclosure provides a method of lowering serum cholesterol in an animal in need thereof comprising administering an oral composition disclosed herein. There is also provided a use of an oral composition disclosed herein for lowering serum cholesterol in an animal in need thereof. Also provided is a use of an oral composition disclosed herein in the preparation of a medicament for lowering serum cholesterol in an animal in need thereof. Further provided is an oral composition disclosed herein for use in lowering serum cholesterol in an animal in need thereof. In one embodiment, a bile acid lowering amount of the oral composition is used.

(54) In one embodiment, the animal in need thereof has a disease or disorder characterized by increased cholesterol accumulation in serum and/or tissue causing pathology or having excessive cholesterol as a risk factor. Cholesterol disorders include familial hypercholesterolemia or inherited cholesterol disorder (ICD), defects in the gene products of cholesterol metabolism e.g. 7-alpha-hydroxylase, and various forms of xanthomas. Increased levels of serum cholesterol may indicate atherosclerosis, biliary cirrhosis, familial hyperlipidemias, high-cholesterol diet, hypothyroidism, myocardial infarction, nephritic syndrome and uncontrolled diabetes. Excessive cholesterol means outside the typical (normal) cholesterol range. Typical cholesterol level is less than 200 mg/dL. Borderline High is 200-239 mg/dL and anything over 240 mg/dL is high. The National Cholesterol Education Program NCEP III report on cholesterol includes Full Report and a Drug Therapy section. This provides a review of examples of cholesterol management by statins, bile acid sequestrants, diet, etc. and it relates to cholesterol levels and risk factors (eg. see Tables IV.1-1 VI.1-1; VI.1-2, VI.1-3). The compositions described herein are similar to bile acid sequestrants in that they reduce bile levels. The NCEP report provides guidance on use of pharmaceutical therapy in relation to the presence of other risk factors. There are two types of cholesterol, HDL cholesterol (sometimes called good cholesterol) and LDL cholesterol (sometimes called bad cholesterol). Excessive cholesterol may also be determined with respect to LDL. For example, drug therapy is optionally considered for individuals with multiple risk factors (2 or more) when LDL cholesterol is: >100 mg/dL (eg. with a goal to reduce LDL cholesterol to <100 mg/dL), at least 130 mg/dL (eg. with a goal to reduce LDL cholesterol to less than 130 mg/dL), at least 160 mg/dL (eg. with a goal to reduce LDL cholesterol to less than 130 mg/dL). Furthermore, drug therapy is also optionally considered for individuals with 0-1 risk factors when LDL cholesterol is at least 190 mg/dL (eg. with a goal to reduce LDL cholesterol to less than 160 mg/dL). Normal values tend to increase with age, and premenopausal women have somewhat lower levels than men of the same age.

(55) In another embodiment, the present disclosure provides a method for increasing or limiting the reduction of serum high density lipoproteins (HDL-C) of an animal comprising administering an oral composition disclosed herein. Also provided is use of an oral composition disclosed herein for increasing or limiting the reduction of serum HDL-C in an animal in need thereof. Further provided is use of an oral composition disclosed herein in the preparation of a medicament for increasing or limiting the reduction of serum HDL-C in an animal in need thereof. Also provided is an oral composition disclosed herein for use in increasing or limiting the reduction of serum HDL-C in an animal in need thereof.

(56) In a further embodiment, the methods the present disclosure provides a method for decreasing serum triglycerides of an animal comprising administering an oral composition disclosed herein. Also provided is use of an oral composition disclosed herein for decreasing serum triglycerides in an animal in need thereof. Further provided is use of an oral composition disclosed herein in the preparation of a medicament for decreasing serum triglycerides in an animal in need thereof. Also provided is an oral composition disclosed herein for decreasing serum triglycerides in an animal in need thereof.

(57) In yet a further embodiment, the present disclosure provides a method for reducing atherosclerotic risk factors of an animal comprising administering an oral composition disclosed herein. Also provided is use of an oral composition disclosed herein for reducing atherosclerotic risk factors in an animal in need thereof. Further provided is use of an oral composition disclosed herein in the preparation of a medicament for reducing atherosclerotic risk factors in an animal in need thereof. Also provided is an oral composition disclosed herein for reducing atherosclerotic risk factors in an animal in need thereof. Atherosclerotic risk factors, include, without limitation serum homocystine, fibrinogen, C-reactive protein, lipoprotein(a), uric acid, matrix metallopeptidase 9 (MMP-9), plasminogen activator inhibitor-1 (PAI-1) or its antigen, tissue plasminogen activator (tPA), TNF alpha, IL-6, P-selectin, monocyte chemotactic protein-1 (MCP-1), soluble CD40 ligand (sCD40L), inter-cellular adhesion molecule 1 (ICAM-1), myeloperoxidase (MPO), adiponectin, leptin, lipoprotein-associated phospholipase A and insulin.

(58) In yet another embodiment, the present disclosure provides a method for producing and delivering vitamin B12 to an animal comprising administering an oral composition disclosed herein. Also provided is use of an oral composition disclosed herein for producing and delivering vitamin B12 in an animal in need thereof. Further provided is use of an oral composition disclosed herein in the preparation of a medicament for producing and delivering vitamin B12 in an animal in need thereof. Also provided is an oral composition disclosed herein for producing and delivering vitamin B12 in an animal in need thereof.

(59) In a further embodiment, the present disclosure provides a method for producing and delivering conjugated linoleic acid (CLA) to an animal comprising administering an oral composition disclosed herein. Also provided is use of an oral composition disclosed herein for producing and delivering conjugated linoleic acid (CLA) in an animal in need thereof. Further provided is use of an oral composition disclosed herein in the preparation of a medicament for producing and delivering conjugated linoleic acid (CLA) in an animal in need thereof. Also provided is an oral composition disclosed herein for producing and delivering conjugated linoleic acid (CLA) in an animal in need thereof.

(60) In yet a further embodiment, the present disclosure provides a method of producing and delivering reuterin and reutericyclin to an animal comprising administering an oral composition disclosed herein. Also provided is use of an oral composition disclosed herein for producing and delivering reuterin and reutericyclin in an animal in need thereof. Further provided is use of an oral composition disclosed herein in the preparation of a medicament for producing and delivering reuterin and reutericyclin in an animal in need thereof. Also provided is an oral composition disclosed herein for producing and delivering reuterin and reutericyclin in an animal in need thereof.

(61) The oral compositions described herein are also useful for decreasing serum triglycerides in an animal in need thereof. Accordingly, in one aspect, the present disclosure provides a method of decreasing serum triglycerides in an animal in need thereof comprising administering an oral composition disclosed herein. There is also provided a use of an oral composition disclosed herein for decreasing serum triglycerides in an animal in need thereof. Also provided is a use of an oral composition disclosed herein in the preparation of a medicament for decreasing serum triglycerides in an animal in need thereof. Further provided is an oral composition disclosed herein for use in decreasing serum triglycerides in an animal in need thereof. In one embodiment, a bile acid lowering amount of the oral composition is used.

(62) In another aspect, the present disclosure provides a method for reducing the atherogenic index of an animal, comprising administering to the animal an oral composition of the disclosure. Also provided is a use of a composition of the disclosure for reducing the atherogenic index of an animal. Also provided is a use of an oral composition of the disclosure in the preparation of a medicament for reducing the atherogenic index of an animal. Further provided is an oral composition of the disclosure for use in reducing the atherogenic index of an animal. Atherogenic index is calculated using at least one of the equations shown in Table 1. In one embodiment, a bile acid lowering amount of the oral composition is used.

(63) In yet another aspect, the disclosure provides a method for prophylaxis or treatment of atherosclerosis or a degenerative disorder caused by atherosclerosis in an animal comprising administering to the animal an oral composition of the disclosure. Also provided is a use of an oral composition of the disclosure for prophylaxis or treatment of atherosclerosis or a degenerative disorder caused by atherosclerosis. Also provided is a use of an oral composition of the disclosure in the preparation of a medicament for prophylaxis or treatment of atherosclerosis or a degenerative disorder caused by atherosclerosis. Further provided is an oral composition of the disclosure for use in the prophylaxis or treatment of atherosclerosis or a degenerative disorder caused by atherosclerosis. Degenerative disorders include, without limitation cerebrovascular disease, stroke, vascular disease, coronary artery disease, myocardial infarction, thrombosis, angina, unstable angina, intermittent claudication, transient ischemic attack, or renal failure. In one embodiment, a bile acid lowering amount of the oral composition is used.

(64) The term prophylaxis or treatment of refers to decreasing the likelihood of a condition or ameliorating a condition.

(65) In a further aspect, the disclosure provides a method for lowering total body fat or treating obesity or pre-obesity in an animal, comprising administering to the animal an oral composition of the disclosure. Also provided is a use of an oral composition of the disclosure for lowering total body fat or treating obesity or pre-obesity in an animal. Also provided is a use of an oral composition of the disclosure in the preparation of a medicament for lowering total body fat or treating obesity or pre-obesity in an animal. Further provided is an oral composition of the disclosure for use in lowering total body fat or treating obesity or pre-obesity in an animal. The term obesity as used herein refers to a disease, medical condition or disorder and is defined as a body mass index (BMI)>30. A BMI of 25-30 is pre-obese. In one embodiment, a bile acid lowering amount of the oral composition is used.

(66) In yet a further aspect, the disclosure provides a method for prophylaxis or treatment of a metabolic disease or disorder in an animal comprising administering to the animal an oral composition of the disclosure. Also provided is a use of an oral composition of the disclosure for prophylaxis or treatment of a metabolic disease or disorder in an animal. Also provided is a use of an oral composition of the disclosure in the preparation of a medicament for prophylaxis or treatment of a metabolic disease or disorder in an animal. Further provided is an oral composition of the disclosure for use in the prophylaxis or treatment of a metabolic disease or disorder in an animal. Metabolic diseases and disorders include, without limitation, hyperlipidemia, hyperglycemia, hyperlipoproteinemia, impaired glucose tolerance (IGT), insulin resistance, pre-diabetes, type I diabetes, type II diabetes, and metabolic syndrome. In one embodiment, a bile acid lowering amount of the oral composition is used.

(67) In another aspect, the disclosure provides a method for prophylaxis or treatment of a liver disease or disorder associated with high serum or hepatic lipid and triglyceride concentrations, hepatic inflammation, non-alcoholic fatty liver disease (NAFLD), alcoholic fatty liver disease (AFLD), non-alcoholic steatohepatitis (NASH), liver cirrhosis, liver steatosis, liver fibrosis, abnormally high serum ALT, AST, GGT, or Alk-P levels, Epstein-Barr virus, hepatitis, autoimmune hepatitis, hepatic granulomatus disease, cholangitis, hepatocellular cancer, cholangiocarcinoma, metabolic liver disease in an animal, comprising administering to the animal an oral composition of the disclosure. Also provided is a use of an oral composition of the disclosure for prophylaxis or treatment of a liver disease or disorder associated with high serum or hepatic lipid and triglyceride concentrations, hepatic inflammation, non-alcoholic fatty liver disease (NAFLD), alcoholic fatty liver disease (AFLD), non-alcoholic steatohepatitis (NASH), liver cirrhosis, liver steatosis, liver fibrosis, abnormally high serum ALT, AST, GGT, or Alk-P levels, Epstein-Barr virus, hepatitis, autoimmune hepatitis, hepatic granulomatus disease, cholangitis, hepatocellular cancer, cholangiocarcinoma, metabolic liver disease in an animal. Also provided is a use of an oral composition of the disclosure in the preparation of a medicament for prophylaxis or treatment of a liver disease or disorder associated with high serum or hepatic lipid and triglyceride concentrations, hepatic inflammation, non-alcoholic fatty liver disease (NAFLD), alcoholic fatty liver disease (AFLD), non-alcoholic steatohepatitis (NASH), liver cirrhosis, liver steatosis, liver fibrosis, abnormally high serum ALT, AST, GGT, or Alk-P levels, Epstein-Barr virus, hepatitis, autoimmune hepatitis, hepatic granulomatus disease, cholangitis, hepatocellular cancer, cholangiocarcinoma, metabolic liver disease in an animal. Further provided is an oral composition of the disclosure for use in the prophylaxis or treatment of a liver disease or disorder associated with high serum or hepatic lipid and triglyceride concentrations, hepatic inflammation, non-alcoholic fatty liver disease (NAFLD), alcoholic fatty liver disease (AFLD), non-alcoholic steatohepatitis (NASH), liver cirrhosis, liver steatosis, liver fibrosis, abnormally high serum ALT, AST, GGT, or Alk-P levels, Epstein-Barr virus, hepatitis, autoimmune hepatitis, hepatic granulomatus disease, cholangitis, hepatocellular cancer, cholangiocarcinoma, metabolic liver disease in an animal. In one embodiment, a bile acid lowering amount of the oral composition is used.

(68) Other agents or therapeutics can be coadministered or used in combination with the oral compositions disclosed herein. Accordingly, in an embodiment, the methods and uses disclosed herein further comprise administering a triglyceride lowering agent, optionally, squalene synthase inhibitors, microsomal triglyceride transfer protein inhibitors, statins, bile acid sequestrants, cholesterol absorption inhibitors, fibrates and other PPAR alpha agonists, dual PPAR agonists, lipase inhibitors, protein tyrosine phosphatase 1B inhibitors, pancreatic peptide YY.sub.3-36, recombinant and other cannabinoid receptor antagonists or 5-HT2c agonists, such as lorcaserin. In another embodiment, the methods and uses disclosed herein further comprise administering an agent for increasing HDL or limiting HDL decrease, optionally, statins, bile acid sequestrants, cholesterol absorption inhibitors, fibrates and other PPAR alpha agonists, dual PPAR agonists, lipase inhibitors, protein tyrosine phosphatase 1B inhibitors, pancreatic peptide YY.sub.3-36, recombinant and other cannabinoid receptor antagonists, or 5-HT2c agonists, such as lorcaserin. In yet another embodiment, the methods and uses disclosed herein further comprise administering a cholesterol lowering agent, optionally, a bile acid sequestrant (BAS), a statin, ezetimibe, alpha-Linoleitic acid, omega-3,6,9, eicosapentaenoic acid (EPA), docosahexaenoic acid (DHA), fibrates, soluble fibre, polyphenol, gama-oryzanol hesperetin metabolite, phytochemical, other probiotic, psyllium, phytosterol, phytostanol, vitamin, antioxidant or antibiotic. The statins, include, without limitation, Lovastatin, Pravastatin, Zocor, Fluvastatin, Mevastatin, Pitavastatin, Cerivastatin, Simvastatin, Rosuvastatin and Atorvastatin. The BAS include, without limitation colestyramine, colestipol and colesevelam. The fibrates include, without limitation, clofibrate, bezafibrate, gemfibrozil and fenofibrate. In yet another embodiment, the methods and uses disclosed herein further comprise administering an agent for preserving bsh activity, optionally, inulin, trealose, maltodextran, yeast extract, polyethylene glycol, glycerol, lipid, emulsified fat, a dairy product, glucose, fructose, sucrose, a poly sugar, anhydrobiosis, a polycosanol, polyethlylene glycol (PEG), a plant sterol, a plant stanol, or an omega fatty acid. The polycosanol includes, without limitation, octacosanol, triacontanol, behenyl alcohol, lignoceryl alcohol, ceryl alcohol, 1-heptacosanol, 1-nonacosanol, 1-dotriacontanol, and geddyl alcohol. In a further embodiment, the methods and uses disclosed herein further comprise administering an agent for modulating adipokines or hormones of obesity, optionally, leptin, ghrelin, resistin, adiponectin, chemerin, Il-6, visfatin, retinol binding protein 4 or plasminogen activator inhibitor-1. In yet a further embodiment, the methods and uses disclosed herein further comprise administering a hypoglycemic agent, optionally, Metformin, Rosiglitazone, Pioglitazone, Glyburide, Gliclazide, Glimepiride, Glipizidebile Glibenclamide, Acarbose, Miglitol, Voglibose, Sitagliptin, Nateglinide, Repaglinide, Mitiglinide, Alogliptin, Saxagliptin, Vildagliptin and Dapagliflozin. In another embodiment, the methods and uses disclosed herein further comprise administering a therapeutic for reducing the pro-inflammatory cytokines IL-1/, IL-2, IL-15, IL-3, IL-6, IL-8, IL-12, IL-17, IFN-gamma, TNF-alpha, or for increasing the level of the anti-inflammatory cytokines IL-1ra, IL-9, IL-10, IL-11.

(69) The term animal as used herein refers to any member of the animal kingdom, optionally, a mammal, such as a human.

(70) Administration of an effective amount or bile acid lowering amount of the agents described herein is defined as an amount effective at dosages and for periods of time necessary to achieve the desired result. The effective amount of the highly bsh active bacterial composition is optionally adjusted according to factors such as the disease state, age, sex, and weight of the animal. Dosage regimens are readily adjusted to provide the optimum therapeutic response. For example, several divided doses may be administered daily or the dose may be proportionally reduced as indicated by the exigencies of the therapeutic situation. In one embodiment, the compositions may be administered or used 1 to 4 times per day.

(71) The compositions can be prepared by known methods for the preparation of pharmaceutically acceptable compositions which can be administered to patients, and such that an effective quantity of the cell is combined in a mixture with a pharmaceutically acceptable vehicle. Suitable vehicles are described, for example in Remington's Pharmaceutical Sciences (Remington's Pharmaceutical Sciences, Mack Publishing Company, Easton, Pa., USA 200320.sup.th Edition) and in The United States Pharmacopeia: The National Formulary (USP 24 NF19) published in 1999).

(72) Processes for Growing and Preparing Bacteria

(73) Also provided herein are processes for preparing a highly bsh active bacteria comprising growing bsh-producing bacteria under fermentation conditions that support development of high bsh activity. Suitable fermentation conditions have been described in the compositions section above. For example, the fermentation conditions optionally comprise a carbon source, a nitrogen source, a pH of 4 to 7 and a harvest time of 6 to 24 hours, optionally 8-16 hours. In one embodiment, the carbon source is a sugar that optionally comprises maltose, sucrose, dextrin, a combination of sorbitol and glucose or a combination of inulin and glucose. In a particular embodiment, the carbon source is maltose. In another embodiment, the nitrogen source comprises (i) yeast extract and malt extract, yeast extract and beef extract, or casein hydrolysate and malt extract; and (ii) peptone or tryptone. In a particular embodiment, the peptone is peptone no. 3. Typical concentrations of carbon and nitrogen sources are as described in the compositions section above. In another embodiment, the fermentation conditions further comprise a reducing agent, such as cysteine.

(74) In a further embodiment, the process further comprises lyophilizing the free or microencapsulated bacterial compositions with lyoprotectants as described herein. In one embodiment, the lyoprotectants comprise a final concentration of 0.2% to 10% maltodextrin and 0.05% to 0.33% yeast extract or 0.05-10%, optionally 0.05 to 2.5% inulin and 0.05 to 0.33% yeast extract. In one embodiment, the lyoprotectants comprise a final concentration of 2-4% maltodextrin and 0.1% yeast extract, 0.3% inulin and 0.1% yeast extract, or 0.05-10%, optionally 0.3%, inulin. In another embodiment, the lyoprotectants comprise a final concentration of 0.2% to 10% maltodextrin and 0.01% to 0.1% cysteine. In yet another embodiment, the lyoprotectants comprise 0.2% to 10% maltodextrin, 0.01 to 0.1% cysteine and 0.05% to 0.33% yeast extract. In yet another embodiment, the lyoprotectants comprise 0.05% to 10% inulin and 0.01 to 0.1% cysteine. Maltodextrin concentrations are higher when lyophilizing free cells (about 7.5%) compared to microcapsules (about 1-2%). Cysteine concentrations are also higher when lyophilizing free cells as compared to microcapsules, due to the higher concentration of bacterial cells.

(75) In an alternate embodiment, the process further comprises storing the highly bsh active free or microencapsulated bacterial composition under liquid storage conditions. In one embodiment, the liquid storage conditions comprise a final preservative solution comprising 2.5-10% growth media, 50-99.99% yogurt or other fermented milk, 50-99.99% culture supernatant or 5% MRS solution.

(76) In yet another embodiment, the process further comprises flash freezing the free or microencapsulated composition in cryoprotectant solution as described herein. In one embodiment, the cryoprotectant solution comprises a final concentration of 0.2-10% maltodextrin, optionally 1-3%, maltodextrin and 0.05 to 0.33% yeast extract, optionally 0.1-0.2% yeast extract, 0.05 to 10% inulin, optionally at least 0.2% inulin, 0.5M Trehalose, 0.5M sucrose or fructose, 0.5M lactose, 0.5M maltose or 50-99.99%, optionally 50% spent media. In another embodiment, the cryoprotectant solution comprises a final concentration of 0.2 to 10% maltodextrin, 0.01 to 0.1% cysteine and optionally, 0.05 to 0.33% yeast extract. In yet a further embodiment, the cryoprotectant solution comprises a final concentration of 0.05% to 10% inulin and 0.01 to 0.1% cysteine. Flash freezing as used herein refers to subjecting the composition to temperatures below 80 degrees Celsius, for example, by subjecting the free or microencapsulated composition to liquid nitrogen such as at a temperature of 196 degrees Celsius, or freezing the composition at ultra low temperatures, such as 130 degrees Celsius, or using dry ice.

(77) The above disclosure generally describes the present disclosure. A more complete understanding can be obtained by reference to the following specific examples. These examples are described solely for the purpose of illustration and are not intended to limit the scope of the disclosure. Changes in form and substitution of equivalents are contemplated as circumstances might suggest or render expedient.

(78) The following non-limiting examples are illustrative of the present disclosure:

EXAMPLES

(79) Deconjugation of TDCA and GDCA by Free Lactobacillus reuteri Strains (FIGS. 1 and 2)

(80) Results

(81) FIGS. 1 and 2 show the deconjugation of taurodeoxycholic acid and glycodeoxycholic acid, as measured by HPLC, in an in-vitro assay using 0.4 grams of free Lactobacillus reuteri (ATCC 53608, ATCC 53609, ATCC 55148, ATCC 55739, and NCIMB 701359) over time. The NCIMB 701359 and ATCC 55739 Lactobacillus reuteri strains have the highest bsh activity as measured by HPLC. One should take into consideration the limitations to the assay resolution (using 0.4 grams and sampling over 2.5 hours); however, these strains were still shown to be considerably more bsh active than the others tested in this experiment and as the level of GDCA is not measurable at 2.5 hours there is an even greater difference in bsh activity, as the substrate became limiting.

(82) Materials and Methods

(83) Bacteria and Culture Conditions

(84) Four Lactobacillus reuteri strains obtained from ATCC (53609, 53608, 55148 and 55739) and NCIMB 701359 were cultivated in sterile de Man, Rogosa, Sharpe (MRS) broth at 37 C. for 20 hours. Grown cultures were isolated by centrifugation and collected bacteria cells were used in the following BSH assay.

(85) Measurement of BSH Activity

(86) To measure the BSH activity, collected bacteria were added into 100% MRS supplemented with a combination of sodium glycodeoxycholate and sodium taurodeoxycholate both at 5 mM (0.4 g bacteria cells/20 ml MRS supplemented with GDCA and TDCA). Bacteria were then incubated in the reaction broth anaerobically at 37 C. with minimal shaking (100 rpm), and supernatant was sampled at intervals of 2.5 hours and processed to determine the conjugated bile salt concentrations. Briefly, 500 l samples were acidified with 5 ul of 6N HCl after removing bacteria cells by centrifugation at 10000 g for 3 min. The supernatants were then supplemented with 500 l of Methanol containing 4 mM GCA (glycocholic acid) as internal standard. The samples were vortexed for 10 min and centrifuged at 1000 g for 15 min. The samples were filtered through 0.22 M filter before being analyzed by HPLC. HPLC analysis of bile salts followed the procedure described by Jones et al. 2003.

(87) Bile Salt HPLC Analysis

(88) HPLC analysis of bile salts followed the procedure described by Jones et al. 2003. The analysis was performed on a reverse-phase C-18 column: LiChrosorb RP-18, 5 m, 2504.6 mm. The HPLC system comprised of two ProStar 210 solvent delivery modules, a ProStar 320 UV-VIS detector, a ProStar 410 autosampler and Galaxie Chromatography Data system (version 1.9.3.2). A mixture of methanol and 50 mM sodium acetate buffer adjusted to pH4.3 with o-phosphoric acid (70:30, v/v) was applied as mobile phase with a flow rate of 1.0 ml/min. The detector was set at 210 nm and all the measurements were performed at room temperature.

(89) Deconjugation of TDCA and GDCA by Free Lactobacillus reuteri and Lactobacillus fermentum (FIGS. 3 and 4)

(90) Results

(91) FIGS. 3 and 4 show the deconjugation of taurodeoxycholic acid and glycodeoxycholic acid as measured by HPLC in an in-vitro assay of free Lactobacillus reuteri (Lab Met, NCIMB 701359) and Lactobacillus fermentum (ATCC 11976) over time. Lactobacillus reuteri (NCIMB 701359) has a much greater bsh activity than Lactobacillus reuteri (LabMet) or Lactobacillus fermentum (ATCC 11976) and even a fraction (th) of the quantity of Lactobacillus reuteri (NCIMB 701359) cells outperform Lactobacillus reuteri (LabMet) in-vitro.

(92) Materials and Methods

(93) Bacteria and Culture Conditions

(94) The bacterial strains used in this study are L. reuteri (LabMet, NCIMB 701359) and L. fermentum (ATCC 11976). The bacteria were cultivated in sterile de Man, Rogosa, Sharpe (MRS) broth at 37 C. for 20 hours. Grown cultures were isolated by centrifugation and collected bacteria cells were used in the following BSH assay.

(95) Measurement of BSH Activity

(96) To measure the BSH activity, collected bacteria were added into 100% MRS supplemented with a combination of sodium glycocholate and sodium taurocholate at 5 mM (0.4 g or 0.05 g bacteria/20 ml MRS supplemented with GDCA and TDCA). Bacteria were then incubated anaerobically at 37 C., and supernatant was sampled at intervals of 3 hours and processed to determine the conjugated bile salt concentrations in the reaction tubes. Briefly, 500 l samples were acidified with 5 l of 6N HCl after removing bacteria cells by centrifugation at 10000 g for 3 min. The supernatants were then supplemented with 500 l of Methanol containing 4 mM GCA (glycocholic acid) as internal standard. The samples were vortexed for 10 min and centrifuged at 1000 g for 15 min. The samples were filtered through 0.22 M filter before being analyzed by HPLC. HPLC analysis of bile salts followed the procedure described by Jones et. al.

(97) Bile Salt HPLC Analysis

(98) HPLC analysis of bile salts followed the procedure described by Jones et al. 2003. The analysis was performed on a reverse-phase C-18 column: LiChrosorb RP-18, 5 m, 2504.6 mm. The HPLC system comprised of two ProStar 210 solvent delivery modules, a ProStar 320 UV-VIS detector, a ProStar 410 autosampler and Galaxie Chromatography Data system (version 1.9.3.2). A mixture of methanol and 50 mM sodium acetate buffer adjusted to pH4.3 with o-phosphoric acid (70:30, v/v) was applied as mobile phase with a flow rate of 1.0 ml/min. The detector was set at 210 nm and all the measurements were performed at room temperature.

(99) Deconjugation of TDCA and GDCA by Free Lactobacillus reuteri Strains (FIGS. 5 and 6)

(100) Results

(101) FIGS. 5 and 6 show the deconjugation of taurodeoxycholic acid and glycodeoxycholic acid as measured by HPLC in in-vitro assay using 0.2 grams of free Lactobacillus reuteri (NCIMB 701359, NCIMB 701089, NCIMB 702656, NCIMB 11951, ATCC 23272 and LMG 9213) over time. NCIMB 701359, NCIMB 701089 and ATCC 23272 strains have the greatest degree of bsh activity as measured by HPLC, again limited by the resolution of the study.

(102) Materials and Methods

(103) Bacteria and Culture Conditions

(104) The bacterial strains used in this study are L. reuteri NCIMB 701359, L. reuteri NCIMB 701089, L. reuteri NCIMB 702656, L. reuteri NCIMB 11951, L. reuteri ATCC 23272, and L. reuteri LMG 9213. The bacteria were inoculated from single colony and passaged for twice with 1% inoculums. The bacteria were cultivated in sterile de Man, Rogosa, Sharpe (MRS, Difco) broth at 37 C. for 20 hours every time. Grown cultures were isolated by centrifugation and collected bacteria cells were used in the following BSH assay.

(105) Measurement of BSH Activity

(106) To measure the BSH activity, 0.2 g of collected bacteria were added into 100% MRS supplemented with a combination of sodium glycocholate and sodium taurocholate at 5 mM (0.2 g of bacteria/20 ml MRS supplemented with 5 mM GDCA and 5 mM TDCA). Bacteria were then incubated anaerobically at 37 C., and supernatant was sampled after 1, 3, 5, and 7 hours to determine the conjugated bile salt concentrations in the reaction tubes. Briefly, 500 l samples were acidified with 5 l of 6N HCl after removing bacteria cells by centrifugation at 10000 g for 3 min. The supernatants were then supplemented with 500 l of Methanol containing 4 mM GCA (glycocholic acid) as internal standard. The samples were vortexed for 10 min and centrifuged at 1000 g for 15 min. The samples were filtered through 0.45 M filter before being analyzed by HPLC. HPLC analysis of bile salts followed the procedure described by Jones et. al.

(107) Highly bsh Active L. reuteri and Reduction of Cholesterol

(108) Materials and Methods

(109) The bsh activity of Lactobacilli strains was calculated by the standard HPLC assay for TDCA and GDCA described in materials and methods sections above. Rates of xDCA removal were calculated by taking the concentration of GDCA or TDCA removed from simulated intestinal contents at the endpoint and subtracting the baseline value. The amount of DCA produced, or xDCA removed, was divided by the mass of microcapsules used and multiplied by the volume of simulated intestinal contents used and divided by the time elapsed, in hours, from baseline to endpoint. This was done by the equation: xDCA reduced=mol DCA produced or xDCA reduced/g microcapsule/h.

(110) Results

(111) Table 2 shows the bsh activity of Lactobacillus reuteri strains tested preclinically or clinically and expressed as a rate (mol DCA/g/hr) measured over 5 hours and over 30 minutes. Although, Lactobacillus reuteri (LabMet) was shown to lower cholesterol preclinically, high doses of L. reuteri and high frequency dosing was required. The more bsh active Lactobacillus reuteri (NCIMB 701359) which lowered cholesterol in preclinical studies was confirmed to reduce cholesterol significantly in human clinical trials. The higher rate of bsh activity was presumed to be responsible for the activity and there is considerable evidence supporting the claim that a threshold level of bsh activity is required for free cells delivered at high daily doses. It appears that organisms that degrade >50 mol GDCA/gram/hour and >2 mol TDCA/gram/hour measured over 1 hour and 5 hours, respectively and that are delivered in the quantity of 10.sup.6-10.sup.12 organisms are sufficient for cholesterol lowering. For this reason, the even more bsh active Lactobacillus reuteri (NCIMB 701089) are predicted to reduce cholesterol and perform well in preclinical and clinical studies. In addition, bsh activity was measured with the same HPLC assay for TDCA and GDCA; however, the average rate was calculated over a 30 minute period. This provides an accurate determination of the true enzymatic rate, as the xDCA deconjugation curve is more linear between 0 and 30 minutes and the reaction is not limited by the low availability of substrate seen at later time points.

(112) Materials and Methods are the same as for the HPLC assay section described above.

(113) Efficacy and Safety of Highly bsh Active Microencapsulated Lactobacillus reuteri (NCIMB 701359) in Syrian Golden F1B Hamsters (Table 3)

(114) Results

(115) Table 3 shows the lipid endpoint percent change from control values for F1B hamsters induced to be hypercholesterolemic and then treated by gavages with either microencapsulated or free Lactobacillus reuteri (NCIMB 701359). While there are similar reductions of total cholesterol between groups, there is increased LDL-C reduction, less HDL-C reduction, and improved triglyceride removal with the free organism in this model. This results in a dramatic difference in overall atherogenic index (AI) and shows that while there are advantages to microencapsulation in terms of improved delivery and survival, there are also advantages to delivering highly bsh active free organism in that an improved lipid profile may be obtained.

(116) Materials and Methods

(117) A total of 38, 7-8 week old Bio F1B Syrian golden hamsters were purchased from Biobreeders, USA. Upon delivery the animals were given a week of acclimatization. Animals were housed one per cage in a temperature and humidity controlled room with a twelve hour inverted light-dark cycle with food and water available ad libidum. After acclimatization the animals were weighed and blood was collected to assess baseline lipids as described below.

(118) Hypercholesterolemia was induced by five weeks of feeding with Test diet containing 0.05% cholesterol. Food consumption and weight gain was monitored weekly. Blood was collected after four and five weeks of induction and analyzed for lipid levels. Additionally, safety markers were assessed prior to initiation of treatment (five weeks of induction). Fecal samples were collected on the final day of the induction period and assessed for bile acid content.

(119) Any animals that did not show hypercholesterolemia after five weeks of feeding with the hypercholesterolemia inducing diet were excluded (5 animals). The remaining animals were then assigned to one of three treatment groups by block randomization based on serum LDL levels and adjusted to equalize the average weight of each group (n=11 for each group). After randomization, animals were administered treatment by gavage for six weeks.

(120) During the treatment period feeding with the hypercholesterolemic test diet continued. Food intake and weight was monitored on a weekly basis and blood lipid levels were measured on a biweekly basis. After six weeks of treatment endpoint fecal samples were collected and the animals were sacrificed by carbon dioxide. Blood was collected by cardiac puncture for analysis of endpoint lipids, safety markers and hematology. During necropsy, livers from representative animals of each group were collected for histological analysis.

(121) Efficacy and Safety of less bsh Active Microencapsulated Lactobacillus reuteri (LabMet) Containing Yogurt in Lowering Lipids (Table 4)

(122) Results

(123) Table 4 shows the percent change in fasting lipids of mildly hypercholesterolemic subjects in response to consumption of microencapsulated Lactobacillus reuteri (LabMet) over a 6-week treatment period. The result shows some change in serum cholesterol over control with reduced levels of serum triglycerides.

(124) Materials and Methods

(125) This study examined the efficacy of the less bsh active microencapsulated Lactobacillus reuteri (LabMet) containing probiotic yogurt compositions on health parameters related to degenerative disease in humans.

(126) It was anticipated that consumption of the probiotic product would induce favourable shifts in risk markers for several debilitating diseases of increasing age and that probiotic consumption would favourably alter lipids versus conventional treatments in hyperlipidemic individuals.

(127) The study design was a multi phase/washout, randomized, double blinded, controlled trial in which subjects received control yogurts or test yogurts over a 6 week period followed by a 6 week washout prior to following phases.

(128) A total of 30 healthy males and females, aged 18-60 yr, were randomized with plasma LDL-C 130-260 mg/dl, TG levels below 400 mg/dl, and a body mass index (BMI) of 22-32 kg/m.sup.2.

(129) Metabolic diets of precisely known composition were provided to subjects under strict supervision at a clinical research facility. Diets were nutritionally adequate and provided 100% of energy requirements. In addition, the subjects received one test yogurt per day for the treatment period.

(130) Twelve-hour fasting blood samples were collected at the beginning and end of each of the phases of the trial. Blood samples obtained on day 1 and 2 were used to measure baseline values for different study measurements, whereas blood samples obtained on the last days were used to measure final values for serum lipid levels.

(131) Efficacy and Safety of Highly bsh Active Microencapsulated Lactobacillus reuteri (NCIMB 701359) Containing Yogurt in Lowering Lipids (Tables 5 and 6)

(132) Results

(133) Tables 5 and 6 show the percent change in fasting lipids in hypercholesterolemic subjects in response to consumption of the more highly bsh active Lactobacillus reuteri (NCIMB 701359) over a 6-week treatment period. The result shows significant decreases in total and LDL cholesterol as well as in ApoB as would be predicted from the bsh activity values (26.4 mol GDCA/gram/hour and 182.6 mol TDCA/gram/hour). This randomized, double blinded, parallel arm study was well powered and well controlled; thus, any cholesterol lowering was due to the probiotic ingredient.

(134) Materials and Methods

(135) This study examined the efficacy of the highly bsh active microencapsulated Lactobacillus reuteri (NCIMB 701359) containing probiotic yogurt formulations on health parameters related to degenerative disease in humans.

(136) The objective was to evaluate the effects of consumption of a yogurt formulation containing alginate poly-L-lysine alginate (APA) microencapsulated highly bile salt hydrolase (bsh)-active Lactobacillus reuteri (NCIMB 701359) on plasma lipids levels in hypercholesterolemic adults and access the relative changes of plasma LDL-cholesterol concentration in hypercholesterolemic adults after 6 weeks of product consumption versus control product.

(137) The experiment involved a multi-centric (5 centers) double-blinded randomized parallel-arm placebo controlled trial. Subjects were instructed to follow Health Canada dietary recommendations, which are intended to help reduce risks of obesity and heart disease. The study duration was 10 weeks including 2-week wash-out, 2-week run-in periods and a 6-week treatment period. During the wash-out period, subjects followed dietary instructions only. During the run-in period, placebo was taken. The treatment or placebo product was taken during the whole treatment period.

(138) A total of 120 healthy males and females between the ages 18-74, with LDL-Cholesterol >3.4 mmol/L, and TG levels <4.0 mmol/L, and a BMI range 22-32 kg/m.sup.2 were randomized and 109 subjects were evaluated as-per-protocol.

(139) Twelve-hour fasting blood samples were collected at the beginning and end of the treatment period. Blood samples obtained on day 1 and 2 were used to measure baseline values for different study measurements, whereas blood samples obtained on the last days were used to measure final values for serum lipid levels.

(140) Identifying Highly bsh Active Bacteria (FIG. 7 and Table 7)

(141) Results

(142) The MRS-TDCA-plate precipitation zone screening assay show that, as a method for determining bsh activity TDCA, plating is crude and may not be sufficient for identifying highly bsh active candidate cholesterol lowering probiotics. As can be seen, the more bsh active cultures have larger zones of precipitation; however, in cases in which the DCA precipitate is more densely concentrated, screening with TDCA plates alone does not identify the most highly bsh active organisms as potential candidates. For this reason an assay with more resolution, such as an HPLC assay, which quantifies the bsh activity for glyco- and tauro-conjugates may be required.

(143) FIG. 7 shows three bsh active Lactobacillus reuteri grown anaerobically on an MRS-TDCA plate for 24 hours. The size of precipitation zone and density of precipitation are clearly different for each organism.

(144) Table 7 shows the diameter of precipitation (mm) of deoxycholic acid (DCA) as measured on MRS-TDCA plates after 24 hours of anaerobic growth by filter discs impregnated with culture. The values are averages of triplicate measurements on 3 MRS-TDCA agar plates. Comparison of the results from Table 7 with those from Table 2 shows that the zone of precipitation assay does not always differentiate highly bsh active bacteria as it is clear that LR050 has a larger precipitation zone than LR052 but HPLC shows that in fact LR052 is more highly bsh active.

(145) Materials and Methods

(146) Lactobacillus cultures were grown overnight in MRS media at 37 C. 500 l of each culture was centrifuged in a pre-weighed Eppendorf. The supernatant was removed and the pellets were weighed. The pellets were resuspended with MRS to get same 1:10 w/v ratio and 10 l of each culture was added to filter disks in duplicate on different MRS-TDCA agar plates. The plates were incubated anaerobically at 37 C. and measurements were made.

(147) Deconjugation of TDCA and GDCA by Free Lactobacillus reuteri Strains (FIGS. 8 and 9)

(148) Results

(149) FIGS. 8 and 9 show the deconjugation of taurodeoxycholic acid and glycodeoxycholic acid, as measured by HPLC, in an in-vitro assay using 0.2 grams of free Lactobacillus reuteri (ATCC 55148, ATCC 55739, NCIMB 701359, NCIMB 701089, NCIMB 702655, LMG 18238, LMG 22877, LMG 22878, LMG 22879, CCUG 32271, CCUG 32305, CCUG 37470, CCUG 44001, CCUG 44144, CCUG 47824) over time. The results show that strains ATCC 55148, NCIMB 701359, NCIMB 701089, NCIMB 702655, LMG 18238, CCUG 32271, CCUG 32305, CCUG 37470, CCUG 44001 and CCUG 44144 have particularly high bsh activity as measured by HPLC.

(150) Materials and Methods

(151) Bacteria and Culture Conditions

(152) The Lactobacillus reuteri strains were cultivated in sterile de Man, Rogosa, Sharpe (MRS) broth at 37 C. for 20 hours. Grown cultures were isolated by centrifugation and collected bacteria cells were used in the following BSH assay.

(153) Measurement of BSH Activity

(154) To measure the BSH activity, collected bacteria were added into 100% MRS supplemented with a combination of sodium glycodeoxycholate and sodium taurodeoxycholate both at 5 mM (0.2 g bacteria cells/20 ml MRS supplemented with GDCA and TDCA). Bacteria were then incubated in the reaction broth anaerobically at 37 C. with minimal shaking (100 rpm), and supernatant was sampled at intervals of 2.5 hours and processed to determine the conjugated bile salt concentrations. Briefly, 500 l samples were acidified with 5 ul of 6N HCl after removing bacteria cells by centrifugation at 10000 g for 3 min. The supernatants were then supplemented with 500 l of Methanol containing 4 mM GCA (glycocholic acid) as internal standard. The samples were vortexed for 10 min and centrifuged at 1000 g for 15 min. The samples were filtered through 0.22 M filter before being analyzed by HPLC. HPLC analysis of bile salts followed the procedure described by Jones et al. 2003.

(155) Bile Salt HPLC Analysis

(156) HPLC analysis of bile salts followed the procedure described by Jones et al. 2003. The analysis was performed on a reverse-phase C-18 column: LiChrosorb RP-18, 5 m, 2504.6 mm. The HPLC system comprised of two ProStar 210 solvent delivery modules, a ProStar 320 UV-VIS detector, a ProStar 410 autosampler and Galaxie Chromatography Data system (version 1.9.3.2). A mixture of methanol and 50 mM sodium acetate buffer adjusted to pH4.3 with o-phosphoric acid (70:30, v/v) was applied as mobile phase with a flow rate of 1.0 ml/min. The detector was set at 210 nm and all the measurements were performed at room temperature.

Example 2High BSH Activity

(157) General Materials and Methods

(158) Bacterial seeding and growth: the surfaces of frozen glycerol bacterial stocks were scratched with a sterile wooden stick to streak MRS agar plates. After an overnight incubation at 37 C. under anaerobic conditions, a single colony of L. reuteri NCIMB 701359 was picked with a metallic loop under sterile conditions and transferred into a tube containing 10 mL of MRS. The cultures were incubated overnight at 37 C. for experimental use.

(159) Microencapsulation of L. reuteri NCIMB 701359: microcapsules were prepared with an 8% cell load and a 1.75% alginate concentration using a 200 m sized nozzle. The coating process was the following: first, alginate beads were drained of CaCl.sub.2; second, alginate beads were washed in 0.85% (w/v) NaCl for 10 minutes; third, alginate beads were coated in 0.1% (w/v) -PLL for 20 minutes; fourth, alginate-PLL microcapsules were washed with 0.85% (w/v) NaCl for 10 minutes; fifth, alginate-PLL microcapsules were coated with 0.1% (w/v) alginate for 20 minutes; and finally the alginate-PLL-alginate microcapsules were washed with 0.85% (w/v) NaCl for 10 minutes.

(160) BSH assay for frozen and lyophilized free cells: frozen free cells were thawed, centrifuged, and washed and were added (0.05 g) to 20 ml of MRS containing 5 mM TDCA and 5 mM GDCA. Lyophilized free cells were added (0.15 g) to 20 ml of MRS containing 5 mM TDCA and 5 mM GDCA. Samples were taken out after 30 min and were analyzed with HPLC. Controls were the medium alone and freshly prepared microcapsules grown in MRS.

(161) BSH assay for microcapsules: thawed and washed microcapsules (sample between 0.3 g and 2.5 g, depending on relative activity) were added to 20 ml of MRS containing 5 mM TDCA and 5 mM GDCA. Samples were taken out after 30 min and were analyzed with HPLC. Controls were the medium alone and freshly prepared microcapsules grown in MRS. 0.3 g of microcapsules contained 0.03 g pellet of free cells.

(162) HPLC assay for BSH activity: analyses were performed on a reverse-phase C-18 column (LiChrosorb RP-18 250 nm4.6 mm, 5 m) at a flow rate of 1.0 ml/min. The mobile phase was a mixture of methanol and 50 mM sodium acetate buffer (pH 4.3 adjusted with o-phosphoric acid) in 70:30 ratio and detection was measured at 210 nm. The bsh activity was evaluated by the amount of deconjugated GDCA and TDCA in samples per hour per gram microcapsules.

(163) A. Improved bsh Activity Through Fermentation (Tables 8-10)

(164) Materials and Methods

(165) Increase of bsh activity based on carbon and nitrogen sources: Lactobacillus reuteri NCIMB 701359 cells were grown by the general method described above. 1% of L. reuteri NCIMB 701359 was inoculated into modified MRS medium with different sources of carbon and nitrogen. Inoculated cultures were incubated at 37 C. for 24 h. Following incubation time, 0.05 g or 0.1 g of cell pellet was added to 20 ml of MRS containing 5 mM TDCA and 5 mM GDCA. Samples were removed after 0.5 h and 1.5 h, and were analyzed with HPLC. MRS was used as the control growth media. Analyses were performed by HPLC as described in the general methods above.

(166) Increase of BSH activity based on pH and harvest time: Lactobacillus reuteri NCIMB 701359 cells were grown by the general method described above. 1% of L. reuteri NCIMB 701359 was inoculated into growth medium with carbon and nitrogen sources and pH adjusted to pH 5, 6 and 6.8 by adding NaOH or HCl. Inoculated cultures at different pH conditions were incubated at 37 C. for harvest times of 12 h to 48 h. Following incubation time, 0.05 g or 0.1 g of cell pellet was added to 20 ml of MRS containing 5 mM TDCA and 5 mM GDCA. Samples were removed after 0.5 h and 1.5 h, and were analyzed with HPLC as described in the general methods above. Controls were grown in non-modified MRS medium.

(167) Results

(168) The most favourable results from a carbon source for Lactobacillus reuteri NCIMB 701359 fermented in modified MRS, increasing bsh activity and yield, was maltose. GDCA and TDCA were deconjugated at rates of 2,253 (mol/g/h) and 173 (mol/g/h) respectively and a yield of 0.015 g/ml was maintained (Table 8). The most favourable results from nitrogen sources for Lactobacillus reuteri NCIMB 701359 fermented with this carbon source (maltose) and looking for increased GDCA (mol/g/h) deconjugation, TDCA (mol/g/h) deconjugation (HPLC), and yield (g/ml) was a combination of peptone No. 3, yeast extract, malt extract, and cysteine. GDCA and TDCA were deconjugated at rates of 21,185 (mol/g/h) and 2,323 (mol/g/h) respectively and a yield of 0.013 g/ml was maintained (Table 9). The most favourable results for harvest time and initial pH for Lactobacillus reuteri NCIMB 701359 fermented in either the above-noted media (maltose+peptone No. 3+yeast extract+malt extract+cysteine) or MRS, looking for increases for GDCA (mol/g/h) deconjugation, TDCA (mol/g/h) deconjugation (HPLC), and yield (g/ml) was a pH of 5 at a harvest time of 12-20 hours (Table 10).

(169) These results show that conditions including carbon and nitrogen sources, pH, and harvest time achieve high bsh activity and cell yield with Lactobacillus reuteri NCIMB 701359; these conditions produce a highly active product, which maintains high bsh levels over a shelf life in supplement or functional food format, and is cost effective to produce commercially. This data shows that probiotic cells with bsh producing machinery are readily fermented with defined media and conditions to achieve therapeutic levels of enzymatic activity and commercially viable levels of biomass. This process is useful to make bsh active probiotics commercially viable for lipid lowering and other applications.

(170) B. Improved bsh Activity by Lyophilization (Table 11 and FIG. 10)

(171) Materials and Methods

(172) Lyophilization storage conditions for high BSH activity: Microcapsules containing Lactobacillus reuteri NCIMB 701359 were prepared by the general method described above. Microcapsules were stored in a 7:3 ratio of microcapsules to lyoprotectant solution as follows: 1M trehalose, 10% maltodextrin, 1% inulin, 10% maltodextrin and 0.33% yeast extract, 1M trehalose and 0.33% yeast extract, 1% inulin and 0.33% yeast extract, 10% maltodextrin and 1% casein hydrolysate, and 10% skim milk. Slurries containing microcapsules and lyoprotectant solution were lyophilized and stored at 4 C. for 0, 1, 2, 3, 4, 5 and 6 weeks in individual aliquots. At each timepoint, duplicate samples of lyophilized microcapsules containing each lyoprotectant were rehydrated with saline. The bsh assay for microcapsules described above was used to prepare samples for HPLC analysis by the general method above.

(173) Free Lactobacillus reuteri NCIMB 701359 was prepared by the general method described above. Lyoprotectants were added to the free cell slurry at a final concentration of: 10% maltodextrin and 0.33% yeast extract. Slurries were lyophilized and stored at 4 C. or RT for 0, 1, 2, and 3 months in individual aliquots. At each time point, duplicate samples of lyophilized cells containing each lyoprotectant were rehydrated with saline. The bsh assay for lyophilized material described above was used to prepare samples for HPLC analysis by the general method above.

(174) Results

(175) The most favourable results from a lyoprotectant for Lactobacillus reuteri NCIMB 701359, increasing bsh activity were 10% maltodextrin and 0.33% yeast extract, 1% inulin and 0.33% yeast extract, and 1% inulin (Table 11).

(176) These results show that lyoprotectants maintain high bsh activity for Lactobacillus reuteri NCIMB 701359; the lyoprotectant maintains microcapsule morphology upon rehydration (FIG. 10), maintains high bsh levels over a shelf life in supplement or functional food format, and is cost effective to produce commercially. This data shows that free or microencapsulated probiotic cells with bsh producing machinery are readily lyophilized with lyoprotectants to maintain therapeutic levels of enzymatic activity. This process is useful to make lyophilized bsh active probiotics commercially viable for lipid lowering and other applications.

(177) C. Improved bsh Activity by Liquid Storage (Table 12)

(178) Materials and Methods

(179) Liquid storage conditions for BSH activity: Microcapsules containing Lactobacillus reuteri NCIMB 701359 were prepared by the general method described above. Microcapsules were stored in a 1:1 ratio of microcapsules to preservative solutions as follows: 5% growth media, 10% growth media, 20% growth media, 10% MRS media, yogurt, culture supernatant, 1% maltose, 0.85% saline, 1% malt extract, 1% inulin, 10% sorbitol, 0.33% yeast extract, 1% inulin and 0.33% yeast extract and 1M fructose. The resulting microcapsules were stored in preservative solutions at 4 degrees for short-term storage of 4 days in individual aliquots. Duplicate samples of microcapsules containing each liquid preservative solution were removed from storage medium and washed with saline. The bsh assay for microcapsules described above was used to prepare samples for HPLC analysis by the general method above.

(180) Results

(181) The most favourable results from a liquid storage condition for Lactobacillus reuteri NCIMB 701359, considering bsh activity after 4 days liquid storage, were yogurt (1:1), 5% growth media (1:1), 10% growth media, 20% growth media (1:1), culture supernatant (1:1), and 10% MRS (1:1) (Table 12).

(182) These results show liquid storage conditions maintain high bsh activity with Lactobacillus reuteri NCIMB 701359; these conditions result in production of a highly active product, which maintains high bsh levels during temporary liquid storage, and which is cost effective to use in the commercial process. This data shows that specific storage conditions are beneficial for storage in liquid media to achieve therapeutic levels of enzymatic activity. This process is useful in maintaining bsh activity during short term storage and makes the production process commercially viable for producing bsh active probiotics for lipid lowering and other metabolic disease therapeutic applications.

(183) D. Improved Bsh Activity Through Flash Freezing (Table 13)

(184) Materials and Methods

(185) Flash freezing storage conditions for bsh activity: Microcapsules containing Lactobacillus reuteri NCIMB 701359 were prepared by the general method above. Microcapsules were stored in a 1:1 ratio of microcapsules to cryoprotectant solution as follows: 1M trehalose, 1M fructose, 1% inulin, 1M maltose, 1M lactose, 1M sucrose, 10% PEG 8000, 0.85% saline, 10% skim milk, 10% starch or 10% fructooligosaccharides. Slurries containing microcapsules and cryoprotectant solution were slowly passed through a sterile syringe to form spherical droplets which were suspended in liquid nitrogen. The resulting flash frozen pellets were isolated from liquid nitrogen and stored at 80 C. in individual aliquots. Immediately and after 3 weeks storage, duplicate samples of pelleted microcapsules containing each cryoprotectant solution were removed from storage medium and washed with saline. The bsh assay for microcapsules described above was used to prepare samples for HPLC analysis described in the general methods above.

(186) Free Lactobacillus reuteri NCIMB 701359 were prepared by the general method above. Free cell pellet was re-suspended in spent media at a 1:1 ratio of cells to spent media. The resulting cell slurry was slowly passed through a sterile syringe to form spherical droplets which were suspended in liquid nitrogen. The resulting flash frozen pellets were isolated from the liquid nitrogen and stored at 80 C. Duplicate samples of pelleted cells containing spent media cryoprotectant solution were removed from storage medium. The bsh assay for free cells described above was used to prepare samples for HPLC analysis described in the general methods above.

(187) Results

(188) The most favourable results from cryopreservative media for Lactobacillus reuteri NCIMB 701359, flash frozen in liquid nitrogen, when considering capsule morphology and/or % remaining bsh activity immediately post flash freezing and at 3 weeks, included 1:1 free or microencapsulated bacteria to cryopreservative solution with maltodextrin and yeast extract, inulin, trehalose, fructose, sucrose, lactose, maltose and spent media at indicated concentrations (Table 13).

(189) These results show that cryopreservation conditions when flash freezing in liquid nitrogen for frozen storage achieve high bsh activity and good microcapsule morphology with encapsulated Lactobacillus reuteri NCIMB 701359; allowing production of a product with high bsh levels over an extended shelf life in supplement or functional food format, and which is cost effective for commercial production. This data shows that free or microencapsulated probiotic cells with high bsh activity are readily prepared under several cryopreservative conditions and flash frozen in liquid nitrogen achieves therapeutic levels of enzymatic activity and excellent microcapsule morphology. This process is useful to make bsh active probiotics commercially viable for lipid lowering and other applications.

(190) High BSH Activity: Benefits of Earlier Fermentation Harvest Times (i.e. 6-12 Hours) to Produce Stable Highly BSH Active Probiotics

(191) Materials and Methods

(192) A 1% inoculum of L. reuteri NCIMB 701359 was used in MRS medium, adjusted to pH 5 and with optimized sources of carbon (maltose), nitrogen (peptone No. 3, yeast extract, malt extract) and supplemented cysteine. Inoculated cultures were incubated at 37 C. and samples were taken at 2, 4, 6, 8, 9, 10, 11, 12, 14 and 16 h. At each time point, cultures were analyzed for cell yield and BSH activity. In order to assess BSH activity, 0.005 g of cell pellet was added to 20 ml of MRS containing 5 mM TDCA and 5 mM GDCA. Samples were removed after 0.5 h, and were analyzed by HPLC. Analyses were performed on a reverse-phase C-18 column (LiChrosorb RP-18 250 nm4.6 mm, 5 m) at a flow rate of 1.0 ml/min. The mobile phase was a mixture of methanol and 50 mM sodium acetate buffer (pH 4.3 adjusted with o-phosphoric acid) in 70:30 ratio and detection was measured at 210 nm. The BSH activity was evaluated by the amount of deconjugated GDCA produced per ml of culture or per gram of cell pellet per hour.

(193) To assess stability, concentrated samples of L. reuteri NCIMB 701359, taken from each time point after the BSH activity plateau was reached (9-16 h), are lyophilized. Shelf-life stability of the resulting powders are measured in real-time (room temperature) and accelerated (37 C., 60% relative humidity conditions.

(194) Results

(195) Using non-optimized media and conditions for L. reuteri NCIMB 701359, BSH activity reaches a maximum in the late stationary phase of growth (i.e. after 48 hours). As shown in Table 14, by employing optimized media and growth conditions for L. reuteri NCIMB 701359, it was shown that both BSH activity and cell yield reached a plateau during log phase of growth, after 9 hours of incubation time (19,071 U/g cell pellet/h and 0.017 g/mL respectively). Even after only 8 hours of incubation, high BSH activity and cell yield was seen (10,085 U/g cell pellet/h 0.015 g/mL respectively), and although BSH activity was not measurable at 6 hours, gene expression was certainly turned on and high levels of BSH enzyme produced at a time point between 6 and 8 hours. Finally, for some strains of probiotic bacteria, early harvest times can result in cells which are less stressed, with a higher nutrient and lower metabolic waste environment, as compared to cells isolated in late stationary phase. This added vigour can be especially beneficial for some strains when the cells are exposed to potentially stressful cryo-freezing or lyophilisation, as shown by increased stability in final format.

(196) Without wishing to be bound by theory, by harvesting early, for example 6-12 hours, there is a healthier biomass and, in combination with appropriate lyoprotectants, would result in improved stability. By harvesting later, for example, 13-24 hours, the cells build up a stress response and are therefore more responsive and stable when lyophilized. Depending on the strain, process, and other factors, the choice of optimal harvest time can be determined.

(197) The present results demonstrate that an earlier harvest time (i.e. 6-12 hours) is readily exploited to link high BSH activity and optimal cell yield with a final product that is stable and a process that is cost-effective commercially. Probiotic cells with BSH producing machinery are readily fermented with optimized media and conditions to achieve therapeutic levels of enzymatic activity and commercially viable levels of biomass at the late log phase of growth. An added advantage of early harvest optimization is the potential for lesser macronutrient requirements, specifically carbon and nitrogen sources, when fermented at a commercial scale, resulting in a more cost-effective overall process.

(198) Again, the specific harvest time for probiotic isolation is strain dependent and based on a defined media that can meet the desired specifications before entry into stationary phase. This process is readily exploited to make the majority of BSH active probiotics commercially viable for lipid lowering and other applications.

(199) High BSH Activity: Cysteine Supplementation in Growth Media, as a Cryoprotectant or as a lyoprotectant for improving enzymatic activity, Cell Viability and Shelf-Life Stability of BSH Active Probiotics

(200) Materials and Methods

(201) Cysteine supplementation in growth media: 1% of L. reuteri NCIMB 701359 was inoculated into modified MRS medium, adjusted to pH 5 and with optimized sources of carbon (maltose) and nitrogen (peptone No. 3, yeast extract, malt extract) and supplemented with or without cysteine at 0.01%. Inoculated cultures were incubated at 37 C. for 16 hours and were analyzed for BSH activity as previously described.

(202) Cysteine supplementation as a cryoprotectant: L. reuteri NCIMB 701359 was fermented, concentrated and flash frozen in liquid nitrogen. Bacterial concentrate was supplemented with 7.5% maltodextrin and 0.05% cysteine or without cryoprotectants (spent media alone).

(203) Bacterial pellet (frozen with no cryoprotectants) was thawed and microencapsulated into alginate-poly-L-lysine-alginate microcapsules (according to general methods). Microcapsules containing L. reuteri NCIMB 701359 were then supplemented with a variety of cryoprotectants including maltodextrin, inulin, yeast extract and cysteine simulating a twice overall freezing process for the bacterial strain.

(204) Results

(205) Cysteine supplementation to a defined optimal media, at a concentration of 0.01%, was shown to significantly improve BSH activity of L. reuteri NCIMB 701359 by 5-10 times greater than the base defined optimal media (FIG. 11). In addition, cysteine is further beneficial when supplemented as a cryoprotectant or lyoprotectant.

(206) Cysteine supplementation at 0.05%, in combination with 7.5% maltodextrin, was shown to protect L. reuteri NCIMB 701359 from oxidative stress during the cryo-freezing process and increase the BSH activity by 4-fold in comparison to spent media alone (FIG. 12). Furthermore, in protecting microencapsulated L. reuteri NCIMB 701359, cysteine was shown to be the key cryoprotectant for the maintenance of BSH activity. Maltodextrin and cysteine was shown to significantly outperform maltodextrin alone or maltodextrin and yeast extract, despite a lower concentration (FIG. 13).

(207) Cysteine supplementation in media or as a protectant is readily used for most probiotics in order to achieve therapeutic targets of BSH activity, notably oxygen sensitive strains, that would not be commercially viable otherwise.

(208) Cysteine is useful as an anti-oxidant and reducing agent, protecting the probiotic from oxidative stress during the cryo-freezing process, such as flash-freezing in liquid nitrogen, or the lyophilisation process. Cysteine can be used to protect thiol-containing proteins from irreversible oxidation during the freezing process. The BSH enzyme can be classified as an N-terminal hydrolase with Cysteine as the N-terminal amino acid. Protection of the free thiol group is useful for catalytic activity.

(209) While the present disclosure has been described with reference to what are presently considered to be the preferred examples, it is to be understood that the disclosure is not limited to the disclosed examples. To the contrary, the disclosure is intended to cover various modifications and equivalent arrangements included within the spirit and scope of the appended claims.

(210) All publications, patents and patent applications are herein incorporated by reference in their entirety to the same extent as if each individual publication, patent or patent application was specifically and individually indicated to be incorporated by reference in its entirety.

(211) TABLE-US-00001 TABLE 1 Two commonly used equations for determining atherogenic index (AI) representing atherogenic risk and used as prognostic indicators patients at risk of developing atherosclerosis Atherogenic Index (AI) = Log(Triglycerides/HDL-Cholesterol) Atherogenic Index (AI) = (TC-HDL-Cholesterol)/(HDL-Cholesterol)

(212) TABLE-US-00002 TABLE 2 BSH activity of free Lactobacillus reuteri as measured by HPLC is shown in mol DCA per gram per hour (mol DCA/g/hr). Taurodeoxycholic acid = TDCA, Glycodeoxycholic acid = GDCA, Deoxycholic acid = DCA. TDCA (mol DCA/g/hr) GDCA (mol DCA/g/hr) TDCA (mol DCA/g/hr) GDCA (mol DCA/g/hr) Average rate Average rate Average rate Average rate (0-5 h) (0-1 h) (0-0.5 h) (0-0.5 h) Free 1.5 47.8 7.2 65.3 L. reuteri (LabMet) Free 26.4 182.6 44.0 372.0 L. reuteri (NCIMB 701359) Free 77.5 424.0 93.0 805.0 L. reuteri (NCIMB 701089)

(213) TABLE-US-00003 TABLE 3 Lipid endpoint values (% change from control) are shown for F1B hamsters induced to be hypercholesterolemic (0.5% dietary cholesterol) (5 weeks) and then treated (6 weeks) by gavages with either microencapsulated or free Lactobacillus reuteri (NCIMB 701359) (n = 33). Total LDL-C Cholesterol HDL-C TG AI (%) (%) (%) (%) (%) Microencapsulated 23.60 16.83 11.11 5.05 11.27 L. reuteri (NCIMB 701359) Free 27.43 16.94 6.26 11.63 18.53 L. reuteri (NCIMB 701359)

(214) TABLE-US-00004 TABLE 4 Percent change in fasting lipid levels (over control) in mildly hypercholesterolemic human subjects in response to consumption of the less bsh active APA microencapsulated Lactobacillus reuteri (LabMet) over a 6 week treatment period (n = 30, as-per-protocol). Total LDL-C Cholesterol HDL-C TG (%) (%) (%) (%) Microencapsulated 0.07 3.63 2.37 12.51 L. reuteri (LabMet)

(215) TABLE-US-00005 TABLE 5 Fasting lipid levels are given, as percent difference from palcebo, in mildly hypercholesterolemic human subjects in response to consumption of highly bsh active microencapsulated Lactobacillus reuteri (NCIMB 701359) over a 6 week treatment period (n = 109, as-per-protocol). Microencapsulated L. reuteri (NCIMB 701359) Lipid % Change % Change Parameter (3 wks) P-Value (6 wks) P-Value TC 2.89 0.2321 4.86 0.0501 LDL-C 3.83 0.1660 9.23 0.0061 HDL-C +0.14 0.9697 +0.49 0.9101 TG 23.69 0.0275 +21.05 0.0869 ApoB-100 3.84 0.2056 6.66 0.0405

(216) TABLE-US-00006 TABLE 6 Fasting lipid levels are given, as a percent change from placebo, in hypercholesterolemic human subjects, at high risk and very high risk, in response to consumption of the highly bsh active APA microencapsulated Lactobacillus reuteri (NCIMB 701359) over a 6 week treatment period (n = 65). Microencapsulated L. reuteri (NCIMB 701359) Lipid Parameter % Change (6 wks) P-Value TC 5.53 0.101 LDL-C 10.22 0.024 HDL-C 0.19 0.97 TG +11.09 0.54 ApoB-100 10.69 0.0082

(217) TABLE-US-00007 TABLE 7 Diameter of precipitation (mm) of deoxycholic acid (DCA) as measured on MRS-TDCA plates after 24 hours of anaerobic growth by filter discs impregnated with culture. The values are averages of triplicate measurements on 3 MRS-TDCA agar plates. Lr010 Lr050 Lr052 2 days 12.6 17.3 17 3 days 13 20 18 4 days 13.2 20.3 18.2

(218) TABLE-US-00008 TABLE 8 Experimental results for determining the carbon source for increasing GDCA (mol/g/h) deconjugation, TDCA (mol/g/h) deconjugation (HPLC), and yield (g/ml) for Lactobacillus reuteri NCIMB 701359 fermented in modified MRS (yeast extract + beef extract + peptone No. 3) while varying the carbon source. Yeast extract + Beef extract + Peptone No. 3 GDCA TDCA Yield (mol/g/h) (mol/g/h) (g/ml) Sucrose 950 117 0.012 Xylose 225 75 0.008 Inulin + Glucose 2050 825 0.008 Lactose 145 18 0.011 Dextrin 1640 180 0.01 Sorbitol + Glucose 1889 689 0.009 Glucose (MRS) 957 57 0.014 Maltose 2253 173 0.015

(219) TABLE-US-00009 TABLE 9 Experimental results for determining the nitrogen sources increasing for GDCA (mol/g/h) deconjugation, TDCA (mol/g/h) deconjugation (HPLC), and yield (g/ml) for Lactobacillus reuteri NCIMB 701359 fermented in the carbon source (maltose) while varying sources of nitrogen. Yeast extract + Casein acid hydrolysate + Yeast extract + Malltose Beef extract Malt extract Malt extract (Carbon GDCA TDCA Yield GDCA TDCA Yield GDCA TDCA Yield source) + (mol/g/h) (mol/g/h) (g/ml) (mol/g/h) (mol/g/h) (g/ml) (mol/g/h) (mol/g/h) (g/ml) Peptone 2253 173 0.015 2156 167 0.018 3322 933 0.018 No. 3 Tryptone 843 514 0.014 1013 67 0.015 Fish 680 80 0.005 1067 107 0.015 peptone Soy 367 67 0.012 689 78 0.018 peptone Peptone 21185 2323 0.013 No. 3 + Cysteine Tryptone + 6271 1271 0.014 Cysteine Proteose 2786 671 0.014 peptone + Cysteine Casein 6271 1414 0.014 peptone + Cysteine Fish 8415 1446 0.013 peptone + Cysteine Soy 1779 179 0.019 peptone + Cysteine

(220) TABLE-US-00010 TABLE 10 Experimental results for determining the harvest time and initial pH increasing for GDCA (mol/g/h) deconjugation, TDCA (mol/g/h) deconjugation (HPLC), and yield (g/ml) for Lactobacillus reuteri NCIMB 701359 fermented with either growth media (maltose + peptone No. 3 + yeast extract + malt extract + cysteine) or MRS media at various initial pH values and harvest times. Growth media pH 5 Growth media pH 6 Growth media pH 6.8 MRS media pH 6.8 GDCA TDCA OD GDCA TDCA OD GDCA TDCA OD GDCA TDCA OD (mol/g/h) (mol/g/h) (600 nm) (mol/g/h) (mol/g/h) (600 nm) (mol/g/h) (mol/g/h) (600 nm) (mol/g/h) (mol/g/h) (600 nm) 12 h 19350 3475 3.12 15775 3063 3.09 18752 2288 2.69 201 0 1.20 16 h 19078 3772 3.18 16163 3547 3.06 18173 2448 2.60 168 0 1.62 20 h 17750 3463 3.21 18013 3001 3.02 15765 2175 2.72 186 0 1.57 24 h 19187 3711 3.10 18860 3048 2.99 16362 2362 2.66 483 33 1.63 36 h 961 80 1.82 48 h 1704 339 1.77

(221) TABLE-US-00011 TABLE 11 Experimental results for lyoprotectants, at a 7:3 microcapsule to lyoprotectant solution ratio, and % of original bsh activity for Lactobacillus reuteri NCIMB 701359 at averaged values for 2 and 3 as well as 5 and 6 weeks. % of Original activity after Lyoprotectant solutions shown to retain microcapsule lyophilization and storage at 4 C. morphology after lyophilization and rehydration Weeks 2 and 3 Weeks 5 and 6 Free cells:(final concentration: 10% maltodextrin + 0.33% yeast 100% (1, 2, 3 extract) months at 4 C. and RT) Microcapsules:1M Trehalose (7:3) (final conc. 0.3M) 70.4% 67.4% Microcapsules:10% Maltodextrin (7:3) (final conc. 3%) <25% <25% Microcapsules:1% Inulin (7:3) (final conc. 0.3%) 83.1% 85.3% Microcapsules:10% Maltodextrin + 0.33% Yeast extract (7:3) 100% 100% (final conc. 3% + 0.1%) Microcapsules:1M Trehalose + 0.33% Yeast extract (7:3) (final 69.2% 65.2% conc. 0.3M + 0.1%) Microcapsules:1% Inulin + 0.33% Yeast extract (7:3) (final conc. 75.2% 80.5% 0.3% + 0.1%) Microcapsules:10% Maltodextrin + 1% Casein hydrolysate (7:3) <25% <25% (final conc. 3% + 0.3%)

(222) TABLE-US-00012 TABLE 12 Experimental results for liquid storage conditions based on bsh activity (% original) at 4 days. % of original bsh activity after short term storage Storage condition (4 days) at 4 C. Microcapsules:Yogurt (3:97) 87.1% (1 wks) Microcapsules:Yogurt (3:97) 54.6% (4 wks) Microcapsules:Yogurt (3:97) 53.5% (6 wks) Microcapsules:Yogurt (1:1) 96.0% Microcapsules:5% Growth media (1:1) (final 92.6% conc. 2.5%) Microcapsules:10% Growth media (1:1) (final 92.4% conc. 5%) Microcapsules:20% Growth media (1:1) (final 88.2% conc. 10%) Microcapsules:100% Culture supernatant 87.0% (1:1) (final conc. 50%) Microcapsules:10% MRS (1:1) (final conc. 81.5% 5%) Microcapsules:1% Maltose (1:1) (final conc. 22.0% 0.5%) Microcapsules:1% Malt extract (1:1) (final <15% conc. 0.5%) Microcapsules:1% Inulin (1:1) (final conc. <15% 0.5%) Microcapsules:10% Sorbitol (1:1) (final conc. <15% 5%) Microcapsules:0.33% Yeast extract (1:1) <15% (final conc. 0.165%) Microcapsules:1% Inulin + 0.33% Yeast <15% extract (1:1) (final conc. 0.5% + 0.165%) Microcapsules:1M Fructose (1:1) (final conc. <15% 0.5M) Microcapsules:No liquid <15% Microcapsules:0.85% Saline (1:1) (final conc. <15% 0.425%)

(223) TABLE-US-00013 TABLE 13 Experimental results for cryopreservative solution, when flash freezing and storing at 80 C., for Lactobacillus reuteri NCIMB 701359 microcapsules determined by microscopy for microcapsule morphology (% original quality) and HPLC for bsh activity (% original activity) data immediately after flash freezing in liquid nitrogen and after 3 weeks storage at 80 C. % of Original Quality % of Original BSH activity Microcapsule Post-Flash freeze Post-Flash freeze + Cryopreservation Conditions Morphology and thaw process storage (3 weeks) Free cells:cells + 100% spent media (1:1) (final 100% conc. 50%) Microcapsules:1% maltodextrin + 0.23% yeast 77.8% extract (1:1) (final conc. 0.5% + 0.115%) Microcapsules:2% maltodextrin + 0.23% yeast 100% extract (1:1) (final conc. 1% + 0.115%) Microcapsules:10% maltodextrin + 0.33% yeast 100% extract (1:1) (final conc. 5% + 0.165%) Microcapsules:1% Inulin (1:1) (final conc. 0.5%) 100% 98.5% 90.3% Microcapsules:1M Trehalose (1:1) (final conc. 98.3% 100% 88.3% 0.5M) Microcapsules:1M Fructose (1:1) (final conc. 98.2% <50% <50% 0.5M) Microcapsules:1M Sucrose (1:1) (final conc. 97.1% 97.7% 93.3% 0.5M) Microcapsules:1M Lactose (1:1) (final conc. 95.0% 100% 92.3% 0.5M) Microcapsules:1M Maltose (1:1) (final conc. 90.0% 94.2% 92.1% 0.5M) Microcapsules:10% FOS (1:1) (final conc. 5%) 70.0% Not tested due to morphology Microcapsules:10% PEG8000 (1:1) (final conc. 28.1% Not tested due to morphology 5%) Microcapsules:10% Skim milk (1:1) (final conc. 25.5% Not tested due to morphology 5%) Microcapsules:10% Starch (1:1) (final conc. 24.4% Not tested due to morphology 5%) Microcapsules:0.85% Saline (1:1) (final conc. 12.0% Not tested due to morphology 0.425%)

(224) TABLE-US-00014 TABLE 14 BSH activity, cell yield and stability of L. reuteri NCIMB 701359 grown in optimized media and harvested at different time points Harvest BSH activity BSH activity time (U/mL (U/g cell Cell yield Stability in final (h) culture/h) pellet/h) (g/mL) formulation 0 0 0 0.000 NA 2 0 0 0.002 NA 4 0 0 0.005 NA 6 0 0 0.011 NA 8 153 10085 0.015 Superior shelf life 9 319 19071 0.017 10 312 20559 0.015 11 312 18746 0.017 12 323 17364 0.019 14 343 22644 0.015 16 348 17618 0.020 Inferior shelf life

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