METHOD AND DEVICE FOR IMAGING A PLANT, AND METHOD FOR DETERMINING A CHARACTERISTIC OF A PLANT
20200162668 ยท 2020-05-21
Assignee
Inventors
Cpc classification
H04N23/54
ELECTRICITY
G01B11/245
PHYSICS
H04N23/55
ELECTRICITY
H04N23/695
ELECTRICITY
H04N23/90
ELECTRICITY
International classification
G01B11/245
PHYSICS
Abstract
The invention provides a device (10) for acquiring images of a plant, which device comprises:
i) a first structure (60) defining a cavity (33) for receiving a portion to be imaged of the plant, the cavity presenting a longitudinal axis (13) and an opening (65) at one of its ends, the cavity being defined by at least one transparent wall forming a window (12) for observing the portion to be imaged;
ii) a second structure (61) extending around the window (12) and mounted to move in translation along the longitudinal axis (13) relative to the first structure, and comprising: hollow reflective optics (11, 19) extending around the window and including a reflecting surface (19) directed towards the longitudinal axis; and a plurality of image sensors (18) regularly distributed around the window (12), the field of view (77) of each sensor including at least a portion of the reflective optics so as to capture images of the portion of the plant that is surrounded by the window, which images are reflected by the reflective optics; and. iii) an actuator (64) for driving the second structure to move relative to the first structure along the longitudinal axis.
Claims
1. A device for acquiring images of a plant, the device comprising: i) a first structure defining a cavity for receiving a portion to be imaged of the plant, the cavity being elongate along a longitudinal axis and presenting an opening at one of its two longitudinal ends, the cavity being defined by at least one transparent wall forming a window for observing the portion of the plant to be imaged; ii) a second structure extending around the window and mounted to move in translation along the longitudinal axis relative to the first structure, the second structure comprising: reflective optics extending around the window and including at least one reflecting surface directed towards the longitudinal axis; and a plurality of image sensors arranged in a substantially regular distribution around the window, each sensor having a field of view including at least a portion of the reflective optics so as to capture images of a sector of the portion of the plant that is surrounded by the window, which images are reflected by the reflective optics; and iii) an actuator arranged to drive the second structure to move relative to the first structure along the longitudinal axis.
2. A device according to claim 1, including guide members secured to the first structure and arranged to guide the second structure while it is moving.
3. A device according to claim 1, including a processor unit for processing image data or signals delivered by the image sensors, the processor unit being secured to the first structure, and the device including wired or wireless transmission means for transmitting data or signals from the sensors to the processor unit.
4. A device according to claim 1, wherein the reflective optics include a respective reflecting surface associated with each image sensor, which reflecting surface is convex.
5. A device according to claim 1 wherein the reflective optics include a respective reflecting surface associated with each image sensor, and wherein the intersection between the optical axis of a sensor and the associated reflecting surface coincides substantially with the center of that surface.
6. A device according to claim 1 wherein the or each reflecting surface is inclined relative to the longitudinal axis at an angle of inclination that lies in the range approximately 35 degrees to approximately 40 degrees.
7. A device according to claim 1 wherein the or each reflecting surface is inclined relative to the longitudinal axis at an angle of inclination that lies in the range approximately 50 degrees to approximately 55 degrees.
8. A device according to claim 1 including a first screen extending around the reflective optics so as to form a background for the image sensors.
9. A device according to claim 1 including a second screener extending around the window, from the image sensors that extend around the screen, and along the window over a length that is less than the distance between a sensor and the reflecting surface associated with the sensor, the second screen being secured to the second structure, so as to reduce interfering light that propagates towards the image sensors.
10. A device according to claim 1 including at least one light source associated with each image sensor, which light source is secured to the second structure and is arranged to produce light flux directed towards a reflecting surface associated with the sensor, the light flux propagating substantially parallel to the optical axis of the image sensor and/or substantially parallel to the longitudinal axis.
11. A method of taking images of a plant, comprising: surrounding a portion to be imaged of the plant with at least one transparent wall forming a window presenting a longitudinal axis and enabling the portion of the plant to be observed through the window; arranging around the window at least one reflecting surface directed towards the longitudinal axis, and also at least one sensor of images of the plant as reflected by the reflecting surface(s); capturing a first image of a first peripheral section of the plant as reflected by the reflecting surface(s); moving the reflecting surface(s) and the image sensor(s) relative to the window along the longitudinal axis; capturing a second image of a second peripheral section of the plant as reflected by the reflecting surface(s), the first and second peripheral sections overlapping partially; and forming an image of a peripheral portion of the plant from the first image and from the second image.
12. A method according to claim 11, wherein the number of images taken in succession by the or each image sensor during a complete movement stroke of the reflecting surface(s) and of the image sensor(s) along the window is of the order of one or more tens, the images taken corresponding to the same number of neighboring portions or zones of the outside surface of the plant, these neighboring zones or portions overlapping partially in pairs.
13. A method according to claim 11, wherein the first and second images are captured while the reflecting surface(s) and the image sensor(s) are moving, i.e. without interrupting the movement, and wherein the reflecting surface(s) and the image sensor(s) are caused to move at a speed that is substantially constant.
14. A method according to claim 11 wherein during at least a portion of the time first and second images are being taken, the plant is illuminated by a light pulse produced by at least one light source, a ratio of the duration between two successive light pulses to a duration of each light pulse being greater than one, and wherein image acquisition is controlled synchronously with the movement of the reflecting surface(s) and of the image sensor(s) along the window.
15-32. (canceled)
33. A method according to claim 11, for determining a characteristic (Ng) of the plant, wherein initial images (1i) are acquired of neighboring zones of the outside surface of the plant, which images are respectively acquired from a plurality of viewpoints by a plurality of sensors of an imaging device including an optical device associated with each sensor, the neighboring zones overlapping partially in pairs; the method comprising the following operations: a) segmenting the initial images in order to conserve a zone of interest from each initial image, so as to obtain a segmented image (Is) from each initial image; b) for each segmented image: b1) for each pixel of at least a subset of the pixels of the segmented image, calculating the coordinates (Co) of the point of a three-dimensional model (Mv) of the plant made up of developable surfaces, which point is the image of the pixel taken by the optical device; b2) flattening the segmented image as a function of the coordinates calculated for each pixel of the segmented image so as to obtain a developed image (Id); c) assembling the developed images so as to obtain an assembled image (Ia); and d) determining the characteristic (Ng) from the assembled image or from the developed images.
34. A method according to claim 33, wherein assembling together developed images includes blending together the developed images.
35. A method according to claim 34, wherein for each segmented image, and for each pixel of the segmented image, a quality indicator for the pixel is calculated, which indicator varies as a function of the viewing angle at which the point of the model of the plant that is the image of the pixel is seen by the optical device, and wherein the quality indicator is used for blending together the developed images.
36. A method according to claim 35, wherein the quality indicator corresponds substantially to the angle of inclination relative to the normal to the surface of the model of the image point of the pixel under consideration for the ray coming from the image point of the pixel under consideration and terminating at the pixel under consideration.
37. A method according to claim 33 wherein determining the characteristic (Ng) includes segmenting the assembled image or the developed images so as to obtain closed outlines.
38. A method according to claim 35 wherein closed outlines are selected from the closed outlines obtained by segmentation, the outlines that are selected having at least one morphological parameter such as the elongation of the outline, the convexity of the outline, or the area defined by the outline, that satisfies a determined selection criterion,.
39. A method according to claim 37, wherein the center of gravity of each of the selected closed outlines is calculated.
40. A device according to claim 3, wherein the processor unit is programmed to perform a method according to claim 33.
Description
BRIEF DESCRIPTION OF THE FIGURES
[0092]
[0093]
[0094]
[0095]
[0096]
[0097]
[0098]
[0099]
[0100]
[0101]
[0102]
[0103]
[0104]
[0105]
[0106]
[0107]
[0108]
DETAILED DESCRIPTION OF THE INVENTION
[0109] Unless specified explicitly or implicitly to the contrary, elements or members that are structurally or functionally identical or similar are given identical references in the various figures.
[0110] When improving plants and producing seeds, the phenotype characteristics associated with the ear or with the kernel need simultaneously to be taken at a high rate in order to address a large number of plants compatible with such programs, and to comprise data of high quality.
[0111] When selecting varieties, complex characteristics such as yield can be broken down into yield components. With reference to an ear, these components are the number of kernels per ear, the dimensions of the kernels in terms of length, width, and volume, the overall volume of the ear, the number of rows, and the number of kernels per row. Analyzing these components on an ear of maize can make it possible to select ears when performing variety selection. Nevertheless, these elements can be counted only manually and mainly on ears that have been harvested and shelled, which requires a large amount of manipulation.
[0112] Analyzing these elements is also important for early evaluation of transgenic plants.
[0113] Analyzing an ear by imaging plants serves also to see the portions of the ear that have been pollinated and those that have not been pollinated, which characteristic is of particular importance, e.g. if it is desired to evaluate the tolerance of a plant to an abiotic stress such as drought, where kernel abortion is a major marker for such stress. Taking images of ears in the field can also be a tool for tracking disease and for characterizing the tolerance of the material to abiotic stresses (Fusarium verticiloides, Fusarium monoliforme, etc.).
[0114] In nonexhaustive manner, once a component of the ear or of the kernel has been measured, the resulting information can be used in numerous applications. These applications may be identifying characteristics of interest in genetic resources, making use of these characteristics in a selection program, whether on a line or on a hybrid, viewing the effectiveness of a program for multiplying seeds, etc.
[0115] Finally, when producing seeds or kernels, the pollination value serves to forecast production, and for example to assist in predicting harvesting dates and expected volumes. Earlier observation of this criterion can make it possible to forecast the harvest and to plan harvesting: volumes, harvesting dates, variation in drying requirements.
[0116] When producing maize kernels, early evaluation of kernel values such as the number of kernels, the color, and the size of the kernels, serves to evaluate the quality of the harvest, which value is important not only in producing maize kernels, but also in producing maize forage, where this value is likewise an indicator of the value of the crop, and enables a nutritional value to be evaluated, and for example to set the harvest price. Measuring maize ear characteristics is of agronomic interest, in particular if measurements are taken in situ, before harvest. The device described by the invention enables such measurements to be taken on standing plants after removing or folding back the husk or shuck covering the ear, and may advantageously be coupled with a geo-referencing system to enable the operator to have data about ears including knowledge of their exact positions, in particular when measurements are taken on plants that are selected at random over a parcel, and also enables results from the plant under evaluation to be reconciled directly in the context of a specific experimental design.
[0117] When looking for particular characteristics, such as the presence of symptoms associated with a disease, in particular on the shuck, the device may also be used on an ear without folding back the shuck.
[0118] With reference to
[0119] The optical system 11 is surrounded by an external window 15.
[0120] The windows 12 and 15 may be made of a transparent material such as glass or some lighter material. Alternatively, the external window 15 may be opaque.
[0121] The windows 12 and 15 are generally tubular in shape, in particular they are in the form of cylinders of circular section, about an axis 13 forming the longitudinal axis and the general axis of symmetry of the device 10.
[0122] The windows 12 and 15 form portions of the first structure 60 of the device, which structure 60 also has a wall 62 that is secured to the windows, extending from, and shutting, the top ends of the windows, and supporting an actuator 64 such as a stepper motor.
[0123] The window 12 and the wall 62 thus define a (tubular) cylindrical cavity 33 that is open at its bottom end 65, presenting a shape that is elongate along a longitudinal axis 13, with a height (as measured along the axis 13) and a cross-section that are matched to the plant portion to be imaged, since it is to be inserted into this cavity for that purpose.
[0124] Thus, the walls 12, 62 of the device 10 are designed to cover and surround an entire ear of a standing plant, with the stalk that supports the ear passing through the opening 65 and under the device.
[0125] The optics 11 are made up of eight identical mirrors having their respective reflecting surfaces 19 sloping relative to the axis 13 at an acute angle 20 that is common to all of the surfaces 19, and substantially equal to 50 degrees, for example, and they face upwards (cf.
[0126] The optics 11 form part of the second structure 61 of the device, extending around the window 12 and mounted to be movable in translation along the longitudinal axis 13 relative to the first structure 60.
[0127] The structure 61 also has eight identical imagers, each including an image sensor 18 and a lens (reference 14,
[0128] The image sensors 18, which may be matrix sensors made of complementary metal oxide semiconductor (CMOS) technology, are fastened to an annular wall 72 and, like the surfaces 19, they are arranged in regularly distributed manner around the window 12 and the axis 13.
[0129] The reflective optics thus include a respective reflecting surface 19 associated with each image sensor.
[0130] As shown in
[0131] As shown in
[0132] As shown in
[0133] The positioning of the device 10 around the ear for imaging is performed in such a manner that the ear extends substantially along the axis of symmetry 13 of the optics 11 and of the cavity 33, so that the various portions of the peripheral surface of the ear are situated at substantially the same distance from the window 12, and consequently from the surfaces 19 of the optics 11.
[0134] For this purpose, it is possible, inside the cavity 33, to provide a guide 69 for the free end of the ear, i.e. its top end, as shown in
[0135] The guide 69 is mounted to slide in the cavity 33 along the axis 13, and its top portion bears against a spring 70 secured to the wall 62,
[0136] The bottom face of the guide 69, against which the end of the ear can bear, includes a central depression 71 serving to center the top end of the ear in the cavity 33.
[0137] The ear is also positioned in the bottom portion of the cavity 33 so as to extend above the recess 21 of the optics 11 when the optics 11 and the second structure 61 are in the low end-of-stroke position, substantially as shown in
[0138] The first structure also has guides 68 serving to guide the second structure as it moves, which guides are secured to the wall 62 and to a transverse annular wall 75 connecting together the respective bottom ends of the walls 12 and 15.
[0139] The guides 68 extend parallel to the axis 13 and they pass through respective openings 74 provided in the two walls 72, 73 forming parts of the second structure, each wall being annular in shape.
[0140] The actuator 64 is fastened to the first structure 60 and is arranged to drive the second structure 61 in (reciprocating) translation along the axis 13 relative to the first structure by means of a motion transmission member 76, such as a cog belt.
[0141] The first structure includes a processor unit 67 for processing image data delivered by the image sensors 18, and the device includes ribbon cables 78 connecting the sensors to the unit 67 for the purpose of transmitting data from the sensors to the processor unit.
[0142] The data processor unit may be connected to a display interface, which may be integrated in the portable device 10, so that an operator carrying the device can view the results of measuring and processing images by looking at the interface. If a geolocation system is associated with the device, the geographical position of the measurement is also available.
[0143] As shown in
[0144] The movable structure 61 includes a respective light source 29 associated with each sensor 18, each of which light sources is fastened to the support 72 that is common to the sensors 18 and is arranged so as to produce a light beam that is directed towards the reflecting surface associated with the sensor, propagating parallel to the optical axis of the image sensor and parallel to the longitudinal axis 13, so as to illuminate a portion to be imaged of a part of the surface of the ear, by the light beam being reflected on the surface 19.
[0145] The light beam produced by the light source(s) may present a light spectrum that is white or yellow.
[0146] The portable device 10 may also include a data storage unit connected to the processor unit 67 and arranged to store data delivered by the processor unit, together with a battery arranged to power the actuator 64, the sensors 18, the sources 29, the unit 67, and the data storage unit.
[0147] In
[0148] After the device has been positioned around an ear, as described above, with the movable structure 61 in its low end-of-stroke position as shown in
[0149] the actuator is operated to move the structure 61 upwards at a constant speed 92, which may be in the range 1 centimeter per second (cm/s) to 100 cm/s, for example, in order to perform a go stroke 93, until the movable structure 61 reaches the high end-of-stroke position shown in
[0150] during this stroke, the unit 67 causes operation of the sources 29 and capture of images of the ear as reflected by the surfaces 19 during operation of the sources, with this being done on three occasions in the example shown in
[0151] the speed 92 is selected in such a manner that, for each sensor 18, the three images that are taken in succession are images of three respective neighboring zones (referred to as slices or sections) of the outside surface of the ear that overlap partially in pairs; and
[0152] movement of the structure 61 is stopped at the high end-of-stroke position, and then the actuator 64 is controlled so as to cause the structure 61 to move in the opposite direction along a return stroke 94 until it returns to its starting position.
[0153] In other manners of proceeding, image acquisitions may be performed while the movable structure is moving up and/or down.
[0154] With reference to
[0155] a) segmenting 101 the initial images Ii (see
[0156] for each initial image taken by each sensor, this operation may include detecting the left and right edges of the ear or of the slice of ear, and where appropriate modelling those edges with straight-line segments;
[0157] b) projecting each segmented (cut-out) image onto a three-dimensional digital (geometrical) model Mv of the ear, which model is made up of developable surfaces and is linked to the imaging device 10; with projecting comprising the following two operations in succession: [0158] b1) for each pixel 110 of at least a subset of the pixels of the segmented image Is, calculating 106 the coordinates Co of the point 111 of the model Mv that is the image of the pixel taken by the optical device; to do this, and as shown in
[0160] c) assembling together (103) the developed images Id so as to obtain an assembled image Ia, e.g, the image shown in
[0161] d) then determining the number of kernels Ng from the assembled image Ia or from the developed images Id.
[0162] The developed images of the ear or of a slice of the ear may be assembled together laterally after selecting a projection plane and a common angular origin for the various images; for protecting flat, the Cartesian coordinates associated with the pixels may be transformed into cylindrical coordinates
[0163] For each segmented image, and for each pixel of the image, it is possible to calculate a quality indicator for the pixel, which indicator varies as a function of the viewing angle of the point of the model of the plant that is the image of the pixel as seen by the optical device comprising the lens 14 and the mirror 19, and this quality indicator may be used to blend together the overlapping portions of the developed images while they are being assembled together: the values of pixels in image portions that correspond to overlap zones may be weighted by a factor that is proportional to the indicator.
[0164] This quality indicator may correspond to the angle of inclination 112 relative to the normal 113 to the surface 115 of the model Mv at the image point 111 of the pixel 110 under consideration, for the ray 114 connecting the image point 111 of the pixel under consideration to the pixel under consideration.
[0165] It is thus possible, for each pixel of the developed image, to store the quality indicator together with the red, green, and blue (R, G, and B) magnitudes and the coordinates of the point of the model that is associated with the pixel.
[0166] The number of kernels Ng of the ear may be determined from the assembled image Ia for each image of a lateral strip of the ear as obtained by assembling together images taken by one of the sensors, in particular while moving the movable structure of the device.
[0167] Alternatively, the number of kernels Ng may be determined from the image that results from all of the images of the ear.
[0168] When an image of a complete (longitudinal) lateral strip of the ear can be obtained by taking a single image, the number of kernels Ng can be determined by segmenting the developed images corresponding to the images acquired by the various sensors.
[0169] Segmentation of the assembled image or of the developed images is performed in such a manner as to obtain closed outlines, which are the outlines of candidate kernels.
[0170] Segmentation of the image may include converting the assembled image into black and white, with a local thresholding operation.
[0171] In order to determine the number of kernels, it is possible to select from the closed outlines of candidate kernels obtained by segmentation, those that have at least one morphological parameter such as the elongation of the outline, the convexity of the outline, or the area defined by the outline, that satisfies a determined selection criterion, in particular those for which elongation is less than a determined value.
[0172] It is then possible to calculate the center of gravity (CG) of each of the selected closed outlines so as subsequently to be capable of eliminating duplicates, i.e. outlines for which the distances between their respective CGs are small enough to indicate that those outlines have been selected twice over, so as to obtain a more accurate estimate of the number of kernels.
[0173] The selected closed outlines and the corresponding CGs may be included in the possibly-assembled projected images Id, Ia as shown in
[0174] After assembling the developed surfaces together so as to obtain an image of the entire outside surface of the ear, it is possible to identify un-pollinated or aborted zones of the outside surface of the ear, i.e. those zones that do not include any closed outlines (of kernels) and that have at least one geometrical or morphological parameter that satisfies some determined criterion, and to calculate the areas of these zones.
[0175] Calculating CGs can also serve to determine the number of rows of kernels in the imaged ear.
[0176] In the embodiment corresponding to
[0177] For this purpose, it is possible to cross-reference outline information in the segmented images resulting from initial images acquired by all of the sensors.
[0178] For this purpose, for each angular sector of the ear as observed by one of the sensors, and for each pixel of a straight line segment resulting from modelling an edge of the ear, it is possible to determine the point of intersection with a horizontal plane (i.e. a plane perpendicular to the axis 13) of a ray reflected by the mirror associated with the sensor and transmitted through the lens of the sensor, terminating at the pixel under consideration; thereafter, the center and the radius are determined of the largest circle in the horizontal plane under consideration that can be inscribed in the cloud of points of intersection as obtained in this way for the images of all of the angular sectors (as acquired by all of the sensors).
[0179] In each horizontal plane under consideration, it is then possible to associate an elementary developable surface (in particular a cylindrical surface or a conical surface) with each circle, the coordinates of the center and the radius of this surface corresponding respectively to the coordinates of the center and the radius of the circle.
[0180] For horizontal planes that are spaced apart along the axis 13, e.g. for one or more tens of horizontal planes that are substantially regularly spaced apart along this axis, it is thus possible to obtain respective elementary developable surfaces that are adjacent in pairs and that together make up the surface of the model Mv.
[0181] This model may be used in particular for calculating the volume of the ear and also the area of the outside surface of the ear.
[0182] EXAMPLE of an application of the invention to estimating the number of kernels and the number of rows on ears of maize.
[0183] The claimed device was used to take images of 435 mature ears. After being harvested, the number of kernels per ear was measured by using two different methods:
[0184] The number Ng1 plotted up the ordinate axis in
[0185] The number Ng2 plotted up the ordinate axis in
[0186] the number Ng_DRELLO of kernels (plotted along the abscissa axis in
[0187] The correlations between the numbers obtained using each of the two methods and the number of kernels obtained using the DRELLO counter can be seen in
[0188] The ellipses drawn in
[0189] The correlation between the number of rows counted by the described apparatus and method, and the number of rows counted manually, is also significant,
[0190] EXAMPLE of an application of the invention to estimating the width (diameter) and the length of ears of maize.
[0191] On the same population of ears, diameter and length were measured manually using a caliper, and they were compared with the values obtained by the claimed methods and devices.
[0192] The ellipses drawn in
[0193]
[0194]