Method for Constructing Antibody Complementarity Determining Region Library

Abstract

Disclosed are a method and a device for constructing an antibody complementarity determining region (CDR) library. Also disclosed are a method, a device and a computer program product for determining the occurrence frequency of member sequences of an antibody CDR library, by means of which an antibody CDR library with a specific amino acid distribution at one or more positions can be obtained.

Claims

1. A method for generating a primary CDR amino acid sequence library, comprising the steps of: (1) determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences; (2) determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in the primary CDR amino acid sequence library according to a predetermined capacity of the primary CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence; and (3) randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library and cycling same, until the cumulative number of CDR amino acid sequences added to the primary CDR amino acid sequence library reaches the predetermined capacity of the primary CDR amino acid sequence library, thereby generating the primary CDR amino acid sequence library, wherein (3.1) when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein (3.1.1) when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, or (3.1.2) when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or (3.2) when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences.

2. The method of claim 1, further comprising generating a CDR nucleotide sequence library from the primary CDR amino acid sequence library by: reverse-translating all the CDR amino acid sequences in the primary CDR amino acid sequence library into CDR nucleotide sequences, thereby generating the CDR nucleotide sequence library.

3. (canceled)

4. The method of claim 2, further comprising generating a CDR peptide library from the CDR nucleotide sequence library by: (5) synthesizing CDR nucleic acids according to all the CDR nucleotide sequences in the CDR nucleotide sequence library, thereby generating a CDR nucleic acid library; and (6) expressing all the CDR nucleic acids in the CDR nucleic acid library in an expression system, thereby generating the CDR peptide library.

5. The method of claim 1, further comprising generating a CDR peptide library from the CDR amino acid sequence library by: (4) synthesizing CDR peptides according to all the CDR amino acid sequences in the CDR amino acid sequence library, thereby generating the CDR peptide library.

6. (canceled)

7. The method of claim 1, further comprising generating a large CDR amino acid sequence library from a primary CDR amino acid sequence library, comprising the steps of: (4) determining an occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library; and (5) according to the occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library, randomly selecting a sequence from the initial set of alternative CDR amino acid sequences and adding the selected sequence to a secondary CDR amino acid sequence library, until the cumulative number of CDR amino acid sequences added to the secondary CDR amino acid sequence library reaches the predetermined capacity of the secondary CDR amino acid sequence library, thereby generating the secondary CDR amino acid sequence library, and thereby generating the large CDR amino acid sequence library.

8-11. (canceled)

12. The method of claim 1, wherein the predetermined capacity of the primary CDR amino acid sequence library is 1,000 to 10,000 amino acid sequences.

13. The method of claim 7, wherein the predetermined capacity of the secondary CDR amino acid sequence library is 10 to 1000 times the predetermined capacity of the primary CDR amino acid sequence library.

14. The method of claim 1, wherein the length of the CDR amino acid sequence is 3 to 10 amino acid residues, and wherein the CDR amino acid sequence comprises 3 to 10 variable positions.

15. (canceled)

16. The method of claim 1, wherein the initial set of alternative CDR amino acid sequences comprises 10 to 1000 allowable CDR amino acid sequences.

17. (canceled)

18. A device for generating a CDR nucleotide sequence library comprising the following apparatuses: an input apparatus, which is configured for inputting a predetermined length of a CDR amino acid sequence, a predetermined type of an allowable amino acid residue and a predetermined occurrence frequency of each amino acid residue at each position of the CDR amino acid sequence, and/or a predetermined capacity of the CDR amino acid sequence library; a processing apparatus, which is configured to be used for performing the operations of: (1) determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences; (2) determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in a primary CDR amino acid sequence library according to a predetermined capacity of the primary CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence; (3) randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library and cycling same, until the cumulative number of CDR amino acid sequences added to the primary CDR amino acid sequence library reaches the predetermined capacity of the primary CDR amino acid sequence library, thereby generating the primary CDR amino acid sequence library, wherein (3.1) when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein (3.1.1) when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, or (3.1.2) when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or (3.2) when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences; and (4) reverse-translate all the CDR amino acid sequences in the primary CDR amino acid sequence library into CDR nucleotide sequences, thereby generating the CDR nucleotide sequence library; and an output apparatus, which is configured for outputting the CDR nucleotide sequence library.

19. (canceled)

20. The device of claim 18, wherein the device is further configured for generating a CDR peptide library from the CDR nucleotide sequence library, wherein the device further comprising the following apparatus: a nucleic acid synthesis apparatus, which is configured for synthesizing CDR nucleic acids according to all the CDR nucleotide sequences in the CDR nucleotide sequence library, thereby generating a CDR nucleic acid library; and a peptide expression apparatus, which is configured for expressing all the CDR nucleic acids in the CDR nucleic acid library in an expression system, thereby generating the CDR peptide library.

21. The device of claim 18, wherein the device is further configured for generating a CDR peptide library from the primary CDR amino acid sequence library, wherein the device further comprises the following apparatus: a peptide synthesis apparatus, which is configured for synthesizing CDR peptides according to all the CDR amino acid sequences in the primary CDR amino acid sequence library, thereby generating the CDR peptide library.

22. (canceled)

23. The device of claim 18, wherein the device is further configured for generating a large CDR amino acid sequence library from the primary CDR amino acid sequence library by: an input apparatus, which is configured for inputting a predetermined length of a CDR amino acid sequence, a predetermined type of an allowable amino acid residue and a predetermined occurrence frequency of each amino acid residue at each position of the CDR amino acid sequence, a predetermined capacity of the primary CDR amino acid sequence library, and/or a predetermined capacity of a secondary CDR amino acid sequence library; the processing apparatus, which is further configured to (4) determine an occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library; and (5) according to the occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library, randomly select a sequence from the initial set of alternative CDR amino acid sequences and add the selected sequence to a secondary CDR amino acid sequence library, until the cumulative number of CDR amino acid sequences added to the secondary CDR amino acid sequence library reaches the predetermined capacity of the secondary CDR amino acid sequence library, thereby generating the secondary CDR amino acid sequence library, and thereby generating the large CDR amino acid sequence library; and the output apparatus, which is further configured for outputting the large CDR amino acid sequence library.

24-27. (canceled)

28. The device of claim 18, wherein the predetermined capacity of the primary CDR amino acid sequence library is 1,000 to 10,000 amino acid sequences.

29. The device of claim 23, wherein the predetermined capacity of the secondary CDR amino acid sequence library is 10 to 1000 times the predetermined capacity of the primary CDR amino acid sequence library.

30. The device of claim 18, wherein the length of the CDR amino acid sequence is 3 to 10 amino acid residues, and wherein the CDR amino acid sequence comprises 3 to 10 variable positions.

31. (canceled)

32. The device of claim 18, wherein the initial set of alternative CDR amino acid sequences comprises 10 to 1000 allowable CDR amino acid sequences.

33. The device of claim 18, further comprising a storage apparatus, which is configured to store an algorithm for performing the operations.

34. A computer program product, comprising a computer program instruction for operating the device of claim 18.

35. A storage apparatus for storing the computer program product of claim 34.

Description

DETAILED DESCRIPTION OF EMBODIMENTS

[0014] In a first aspect, the present invention relates to a method for generating a CDR amino acid sequence library, comprising the steps of:

[0015] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0016] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in the CDR amino acid sequence library according to a predetermined capacity of the CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence; and

[0017] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the CDR amino acid sequence library and cycling same, until the cumulative number of CDR amino acid sequences added to the CDR amino acid sequence library reaches the predetermined capacity of the CDR amino acid sequence library, thereby generating the CDR amino acid sequence library, wherein [0018] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0019] 3.1.1 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the CDR amino acid sequence library, or [0020] 3.1.2 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0021] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences.

[0022] In a second aspect, the present invention relates to a method for generating a CDR nucleotide sequence library, comprising the steps of:

[0023] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0024] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in the CDR amino acid sequence library according to a predetermined capacity of the CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0025] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the CDR amino acid sequence library and cycling same, until the cumulative number of CDR amino acid sequences added to the CDR amino acid sequence library reaches the predetermined capacity of the CDR amino acid sequence library, thereby generating the CDR amino acid sequence library, wherein [0026] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0027] 3.1.1 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the CDR amino acid sequence library, or [0028] 3.1.2 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0029] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences; and

[0030] 4. reverse-translating all the CDR amino acid sequences in the CDR amino acid sequence library into CDR nucleotide sequences, thereby generating the CDR nucleotide sequence library.

[0031] In a third aspect, the present invention relates to a method for generating a CDR nucleic acid library, comprising the steps of:

[0032] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0033] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in the CDR amino acid sequence library according to a predetermined capacity of the CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0034] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the CDR amino acid sequence library and cycling same, until the cumulative number of CDR amino acid sequences added to the CDR amino acid sequence library reaches the predetermined capacity of the CDR amino acid sequence library, thereby generating the CDR amino acid sequence library, wherein [0035] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0036] 3.1.1 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the CDR amino acid sequence library, or [0037] 3.1.2 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0038] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences;

[0039] 4. reverse-translating all the CDR amino acid sequences in the CDR amino acid sequence library into CDR nucleotide sequences, thereby generating the CDR nucleotide sequence library; and

[0040] 5. synthesizing CDR nucleic acids according to all the CDR nucleotide sequences in the CDR nucleotide sequence library, thereby generating the CDR nucleic acid library.

[0041] In a fourth aspect, the present invention relates to a method for generating a CDR peptide library, comprising the steps of:

[0042] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0043] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in the CDR amino acid sequence library according to a predetermined capacity of the CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0044] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the CDR amino acid sequence library and cycling same, until the cumulative number of CDR amino acid sequences added to the CDR amino acid sequence library reaches the predetermined capacity of the CDR amino acid sequence library, thereby generating the CDR amino acid sequence library, wherein [0045] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0046] 3.1.1 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the CDR amino acid sequence library, or [0047] 3.1.2 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0048] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences;

[0049] 4. reverse-translating all the CDR amino acid sequences in the CDR amino acid sequence library into CDR nucleotide sequences, thereby generating the CDR nucleotide sequence library;

[0050] 5. synthesizing CDR nucleic acids according to all the CDR nucleotide sequences in the CDR nucleotide sequence library, thereby generating the CDR nucleic acid library; and

[0051] 6. expressing all the CDR nucleic acids in the CDR nucleic acid library in an expression system, thereby generating the CDR peptide library.

[0052] In a fifth aspect, the present invention relates to a method for generating a CDR peptide library, comprising the steps of:

[0053] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0054] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in the CDR amino acid sequence library according to a predetermined capacity of the CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0055] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the CDR amino acid sequence library and cycling same, until the cumulative number of CDR amino acid sequences added to the CDR amino acid sequence library reaches the predetermined capacity of the CDR amino acid sequence library, thereby generating the CDR amino acid sequence library, wherein [0056] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0057] 3.1.1 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the CDR amino acid sequence library, or [0058] 3.1.2 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0059] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences; and

[0060] 4. synthesizing CDR peptides according to all the CDR amino acid sequences in the CDR amino acid sequence library, thereby generating the CDR peptide library.

[0061] In a sixth aspect, the present invention relates to a device for generating a CDR amino acid sequence library, comprising the following apparatus: [0062] an input apparatus, which is configured for inputting a predetermined length of a CDR amino acid sequence, a predetermined type of an allowable amino acid residue and a predetermined occurrence frequency of each amino acid residue at each position of the CDR amino acid sequence, and/or a predetermined capacity of the CDR amino acid sequence library; [0063] a processing apparatus, which is configured to be used for performing the operations of:

[0064] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0065] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in the CDR amino acid sequence library according to a predetermined capacity of the CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0066] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the CDR amino acid sequence library and cycling same, until the cumulative number of CDR amino acid sequences added to the CDR amino acid sequence library reaches the predetermined capacity of the CDR amino acid sequence library, thereby generating the CDR amino acid sequence library, wherein [0067] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0068] 3.1.1 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the CDR amino acid sequence library, or [0069] 3.1.2 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0070] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences; and [0071] an output apparatus, which is configured for outputting the CDR amino acid sequence library.

[0072] In a seventh aspect, the present invention relates to a device for generating a CDR nucleotide sequence library, comprising the following apparatus: [0073] an input apparatus, which is configured for inputting a predetermined length of a CDR amino acid sequence, a predetermined type of an allowable amino acid residue and a predetermined occurrence frequency of each amino acid residue at each position of the CDR amino acid sequence, and/or a predetermined capacity of the CDR amino acid sequence library; [0074] a processing apparatus, which is configured to be used for performing the operations of:

[0075] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0076] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in the CDR amino acid sequence library according to a predetermined capacity of the CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0077] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the CDR amino acid sequence library and cycling same, until the cumulative number of CDR amino acid sequences added to the CDR amino acid sequence library reaches the predetermined capacity of the CDR amino acid sequence library, thereby generating the CDR amino acid sequence library, wherein [0078] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0079] 3.1.1 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the CDR amino acid sequence library, or [0080] 3.1.2 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0081] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences; and

[0082] 4. reverse-translating all the CDR amino acid sequences in the CDR amino acid sequence library into CDR nucleotide sequences, thereby generating the CDR nucleotide sequence library; and [0083] an output apparatus, which is configured for outputting the CDR nucleotide sequence library.

[0084] In an eighth aspect, the present invention relates to a device for generating a CDR nucleic acid library, comprising the following apparatus: [0085] an input apparatus, which is configured for inputting a predetermined length of a CDR amino acid sequence, a predetermined type of an allowable amino acid residue and a predetermined occurrence frequency of each amino acid residue at each position of the CDR amino acid sequence, and/or a predetermined capacity of the CDR amino acid sequence library; [0086] a processing apparatus, which is configured to be used for performing the operations of:

[0087] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0088] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in the CDR amino acid sequence library according to a predetermined capacity of the CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0089] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the CDR amino acid sequence library and cycling same, until the cumulative number of CDR amino acid sequences added to the CDR amino acid sequence library reaches the predetermined capacity of the CDR amino acid sequence library, thereby generating the CDR amino acid sequence library, wherein [0090] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0091] 3.1.1 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the CDR amino acid sequence library, or [0092] 3.1.2 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0093] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences; and

[0094] 4. reverse-translating all the CDR amino acid sequences in the CDR amino acid sequence library into CDR nucleotide sequences, thereby generating the CDR nucleotide sequence library; [0095] an output apparatus, which is configured for outputting the CDR nucleotide sequence library; and [0096] a nucleic acid synthesis apparatus, which is configured for synthesizing CDR nucleic acids according to all the CDR nucleotide sequences in the CDR nucleotide sequence library, thereby generating the CDR nucleic acid library.

[0097] In a ninth aspect, the present invention relates to a device for generating a CDR peptide library, comprising the following apparatus: [0098] an input apparatus, which is configured for inputting a predetermined length of a CDR amino acid sequence, a predetermined type of an allowable amino acid residue and a predetermined occurrence frequency of each amino acid residue at each position of the CDR amino acid sequence, and/or a predetermined capacity of the CDR amino acid sequence library; [0099] a processing apparatus, which is configured to be used for performing the operations of:

[0100] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0101] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in the CDR amino acid sequence library according to a predetermined capacity of the CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0102] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the CDR amino acid sequence library and cycling same, until the cumulative number of CDR amino acid sequences added to the CDR amino acid sequence library reaches the predetermined capacity of the CDR amino acid sequence library, thereby generating the CDR amino acid sequence library, wherein [0103] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0104] 3.1.1 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the CDR amino acid sequence library, or [0105] 3.1.2 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0106] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences; and

[0107] 4. reverse-translating all the CDR amino acid sequences in the CDR amino acid sequence library into CDR nucleotide sequences, thereby generating the CDR nucleotide sequence library; [0108] an output apparatus, which is configured for outputting the CDR nucleotide sequence library; [0109] a nucleic acid synthesis apparatus, which is configured for synthesizing CDR nucleic acids according to all the CDR nucleotide sequences in the CDR nucleotide sequence library, thereby generating the CDR nucleic acid library; and [0110] a peptide expression apparatus, which is configured for expressing all the CDR nucleic acids in the CDR nucleic acid library in an expression system, thereby generating the CDR peptide library.

[0111] In a tenth aspect, the present invention relates to a device for generating a CDR peptide library, comprising the following apparatus: [0112] an input apparatus, which is configured for inputting a predetermined length of a CDR amino acid sequence, a predetermined type of an allowable amino acid residue and a predetermined occurrence frequency of each amino acid residue at each position of the CDR amino acid sequence, and/or a predetermined capacity of the CDR amino acid sequence library; [0113] a processing apparatus, which is configured to be used for performing the operations of:

[0114] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0115] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in the CDR amino acid sequence library according to a predetermined capacity of the CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence; and

[0116] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the CDR amino acid sequence library and cycling same, until the cumulative number of CDR amino acid sequences added to the CDR amino acid sequence library reaches the predetermined capacity of the CDR amino acid sequence library, thereby generating the CDR amino acid sequence library, wherein [0117] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0118] 3.1.1 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the CDR amino acid sequence library, or [0119] 3.1.2 when adding the selected CDR amino acid sequence to the CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0120] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences; [0121] an output apparatus, which is configured for outputting the CDR amino acid sequence library; and [0122] a peptide synthesis apparatus, which is configured for synthesizing CDR peptides according to all the CDR amino acid sequences in the CDR amino acid sequence library, thereby generating the CDR peptide library.

[0123] In one embodiment, the predetermined capacity of the CDR amino acid sequence library is 1,000 to 100,000 amino acid sequences, for example 1,000 to 90,000, 1,000 to 80,000, 1,000 to 75,000, 1,000 to 70,000, 1,000 to 60,000, 1,000 to 50,000, 1,000 to 40,000, 1,000 to 30,000, 1,000 to 25,000, 1,000 to 20,000, 1,000 to 10,000, 2,000 to 100,000, 2,500 to 100,000, 3,000 to 100,000, 4,000 to 100,000, 5,000 to 100,000, 6,000 to 100,000, 7,000 to 100,000, 7,500 to 100,000, 8,000 to 100,000, 9,000 to 100,000, or 10,000 to 100,000 amino acid sequences, for example 1,000, 2,000, 2,500, 3,000, 4,000, 5,000, 6,000, 7,000, 7,500, 8,000, 9,000, 10,000, 20,000, 25,000, 30,000, 40,000, 50,000, 60,000, 70,000, 75,000, 80,000, 90,000, 100,000 amino acid sequences.

[0124] In an eleventh aspect, the present invention relates to a method for generating a large CDR amino acid sequence library, comprising the steps of:

[0125] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0126] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in a primary CDR amino acid sequence library according to a predetermined capacity of the primary CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0127] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, and cycling same until the cumulative number of CDR amino acid sequences added to the primary CDR amino acid sequence library reaches the predetermined capacity of the primary CDR amino acid sequence library, thereby generating the primary CDR amino acid sequence library, wherein [0128] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0129] 3.1.1 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, or [0130] 3.1.2 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0131] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences;

[0132] 4. determining an occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library; and

[0133] 5. according to the occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library, randomly selecting a sequence from the initial set of alternative CDR amino acid sequences and adding the selected sequence to a secondary CDR amino acid sequence library, until the cumulative number of CDR amino acid sequences added to the secondary CDR amino acid sequence library reaches the predetermined capacity of the secondary CDR amino acid sequence library, thereby generating the secondary CDR amino acid sequence library, and thereby generating the large CDR amino acid sequence library.

[0134] In a twelfth aspect, the present invention relates to a method for generating a large CDR nucleotide sequence library, comprising the steps of:

[0135] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0136] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in a primary CDR amino acid sequence library according to a predetermined capacity of the primary CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0137] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, and cycling same until the cumulative number of CDR amino acid sequences added to the primary CDR amino acid sequence library reaches the predetermined capacity of the primary CDR amino acid sequence library, thereby generating the primary CDR amino acid sequence library, wherein [0138] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0139] 3.1.1 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, or [0140] 3.1.2 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0141] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences;

[0142] 4. determining an occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library;

[0143] 5. according to the occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library, randomly selecting a sequence from the initial set of alternative CDR amino acid sequences and adding the selected sequence to a secondary CDR amino acid sequence library, until the cumulative number of CDR amino acid sequences added to the secondary CDR amino acid sequence library reaches the predetermined capacity of the secondary CDR amino acid sequence library, thereby generating the secondary CDR amino acid sequence library; and

[0144] 6. reverse-translating all the CDR amino acid sequences in the secondary CDR amino acid sequence library into CDR nucleotide sequences, thereby generating the large CDR nucleotide sequence library.

[0145] In a thirteenth aspect, the present invention relates to a method for generating a large CDR nucleic acid library, comprising the steps of:

[0146] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0147] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in a primary CDR amino acid sequence library according to a predetermined capacity of the primary CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0148] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, and cycling same until the cumulative number of CDR amino acid sequences added to the primary CDR amino acid sequence library reaches the predetermined capacity of the primary CDR amino acid sequence library, thereby generating the primary CDR amino acid sequence library, wherein [0149] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0150] 3.1.1 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, or [0151] 3.1.2 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0152] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences;

[0153] 4. determining an occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library;

[0154] 5. according to the occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library, randomly selecting a sequence from the initial set of alternative CDR amino acid sequences and adding the selected sequence to a secondary CDR amino acid sequence library, until the cumulative number of CDR amino acid sequences added to the secondary CDR amino acid sequence library reaches the predetermined capacity of the secondary CDR amino acid sequence library, thereby generating the secondary CDR amino acid sequence library;

[0155] 6. reverse-translating all the CDR amino acid sequences in the secondary CDR amino acid sequence library into CDR nucleotide sequences, thereby generating the CDR nucleotide sequence library; and

[0156] 7. synthesizing CDR nucleic acids according to all the CDR nucleotide sequences in the CDR nucleotide sequence library, thereby generating the large CDR nucleic acid library.

[0157] In a fourteenth aspect, the present invention relates to a method for generating a large CDR peptide library, comprising the steps of:

[0158] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0159] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in a primary CDR amino acid sequence library according to a predetermined capacity of the primary CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0160] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, and cycling same until the cumulative number of CDR amino acid sequences added to the primary CDR amino acid sequence library reaches the predetermined capacity of the primary CDR amino acid sequence library, thereby generating the primary CDR amino acid sequence library, wherein [0161] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0162] 3.1.1 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, or [0163] 3.1.2 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0164] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences;

[0165] 4. determining an occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library;

[0166] 5. according to the occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library, randomly selecting a sequence from the initial set of alternative CDR amino acid sequences and adding the selected sequence to a secondary CDR amino acid sequence library, until the cumulative number of CDR amino acid sequences added to the secondary CDR amino acid sequence library reaches the predetermined capacity of the secondary CDR amino acid sequence library, thereby generating the secondary CDR amino acid sequence library;

[0167] 6. reverse-translating all the CDR amino acid sequences in the secondary CDR amino acid sequence library into CDR nucleotide sequences, thereby generating the CDR nucleotide sequence library;

[0168] 7. synthesizing CDR nucleic acids according to all the CDR nucleotide sequences in the CDR nucleotide sequence library, thereby generating the CDR nucleic acid library; and

[0169] 8. expressing all the CDR nucleic acids in the CDR nucleic acid library in an expression system, thereby generating the large CDR peptide library.

[0170] In a fifteenth aspect, the present invention relates to a method for generating a large CDR peptide library, comprising the steps of:

[0171] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0172] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in a primary CDR amino acid sequence library according to a predetermined capacity of the primary CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0173] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, and cycling same until the cumulative number of CDR amino acid sequences added to the primary CDR amino acid sequence library reaches the predetermined capacity of the primary CDR amino acid sequence library, thereby generating the primary CDR amino acid sequence library, wherein [0174] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0175] 3.1.1 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, or [0176] 3.1.2 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0177] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences;

[0178] 4. determining an occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library;

[0179] 5. according to the occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library, randomly selecting a sequence from the initial set of alternative CDR amino acid sequences and adding the selected sequence to a secondary CDR amino acid sequence library, until the cumulative number of CDR amino acid sequences added to the secondary CDR amino acid sequence library reaches the predetermined capacity of the secondary CDR amino acid sequence library, thereby generating the secondary CDR amino acid sequence library; and

[0180] 6. synthesizing CDR peptides according to all the CDR amino acid sequences in the CDR amino acid sequence library, thereby generating the large CDR peptide library.

[0181] In a sixteenth aspect, the present invention relates to a device for generating a large CDR amino acid sequence library, comprising the following apparatus: [0182] an input apparatus, which is configured for inputting a predetermined length of a CDR amino acid sequence, a predetermined type of an allowable amino acid residue and a predetermined occurrence frequency of each amino acid residue at each position of the CDR amino acid sequence, a predetermined capacity of a primary CDR amino acid sequence library, and/or a predetermined capacity of a secondary CDR amino acid sequence library; [0183] a processing apparatus, which is configured to be used for performing the operations of:

[0184] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0185] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in a primary CDR amino acid sequence library according to a predetermined capacity of the primary CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0186] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, and cycling same until the cumulative number of CDR amino acid sequences added to the primary CDR amino acid sequence library reaches the predetermined capacity of the primary CDR amino acid sequence library, thereby generating the primary CDR amino acid sequence library, wherein [0187] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0188] 3.1.1 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, or [0189] 3.1.2 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0190] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences;

[0191] 4. determining an occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library; and

[0192] 5. according to the occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library, randomly selecting a sequence from the initial set of alternative CDR amino acid sequences and adding the selected sequence to a secondary CDR amino acid sequence library, until the cumulative number of CDR amino acid sequences added to the secondary CDR amino acid sequence library reaches the predetermined capacity of the secondary CDR amino acid sequence library, thereby generating the secondary CDR amino acid sequence library, and thereby generating the large CDR amino acid sequence library; and [0193] an output apparatus, which is configured for outputting the large CDR amino acid sequence library.

[0194] n a seventeenth aspect, the present invention relates to a device for generating a large CDR nucleotide sequence library, comprising the following apparatus: [0195] an input apparatus, which is configured for inputting a predetermined length of a CDR amino acid sequence, a predetermined type of an allowable amino acid residue and a predetermined occurrence frequency of each amino acid residue at each position of the CDR amino acid sequence, a predetermined capacity of a primary CDR amino acid sequence library, and/or a predetermined capacity of a secondary CDR amino acid sequence library; [0196] a processing apparatus, which is configured to be used for performing the operations of:

[0197] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0198] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in a primary CDR amino acid sequence library according to a predetermined capacity of the primary CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0199] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, and cycling same until the cumulative number of CDR amino acid sequences added to the primary CDR amino acid sequence library reaches the predetermined capacity of the primary CDR amino acid sequence library, thereby generating the primary CDR amino acid sequence library, wherein [0200] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0201] 3.1.1 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, or [0202] 3.1.2 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0203] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences;

[0204] 4. determining an occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library;

[0205] 5. according to the occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library, randomly selecting a sequence from the initial set of alternative CDR amino acid sequences and adding the selected sequence to a secondary CDR amino acid sequence library, until the cumulative number of CDR amino acid sequences added to the secondary CDR amino acid sequence library reaches the predetermined capacity of the secondary CDR amino acid sequence library, thereby generating the secondary CDR amino acid sequence library; and

[0206] 6. reverse-translating all the CDR amino acid sequences in the secondary CDR amino acid sequence library into CDR nucleotide sequences, thereby generating the large CDR nucleotide sequence library; and [0207] an output apparatus, which is configured for outputting the large CDR nucleotide sequence library.

[0208] In an eighteenth aspect, the present invention relates to a device for generating a large CDR nucleic acid library, comprising the following apparatus: [0209] an input apparatus, which is configured for inputting a predetermined length of a CDR amino acid sequence, a predetermined type of an allowable amino acid residue and a predetermined occurrence frequency of each amino acid residue at each position of the CDR amino acid sequence, a predetermined capacity of a primary CDR amino acid sequence library, and/or a predetermined capacity of a secondary CDR amino acid sequence library; [0210] a processing apparatus, which is configured to be used for performing the operations of:

[0211] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0212] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in a primary CDR amino acid sequence library according to a predetermined capacity of the primary CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0213] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, and cycling same until the cumulative number of CDR amino acid sequences added to the primary CDR amino acid sequence library reaches the predetermined capacity of the primary CDR amino acid sequence library, thereby generating the primary CDR amino acid sequence library, wherein [0214] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0215] 3.1.1 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, or [0216] 3.1.2 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0217] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences;

[0218] 4. determining an occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library;

[0219] 5. according to the occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library, randomly selecting a sequence from the initial set of alternative CDR amino acid sequences and adding the selected sequence to a secondary CDR amino acid sequence library, until the cumulative number of CDR amino acid sequences added to the secondary CDR amino acid sequence library reaches the predetermined capacity of the secondary CDR amino acid sequence library, thereby generating the secondary CDR amino acid sequence library; and

[0220] 6. reverse-translating all the CDR amino acid sequences in the secondary CDR amino acid sequence library into CDR nucleotide sequences, thereby generating the CDR nucleotide sequence library; [0221] an output apparatus, which is configured for outputting the CDR nucleotide sequence library; and [0222] a nucleic acid synthesis apparatus, which is configured for synthesizing CDR nucleic acids according to all the CDR nucleotide sequences in the CDR nucleotide sequence library, thereby generating the large CDR nucleic acid library.

[0223] In a nineteenth aspect, the present invention relates to a device for generating a large CDR peptide library, comprising the following apparatus: [0224] an input apparatus, which is configured for inputting a predetermined length of a CDR amino acid sequence, a predetermined type of an allowable amino acid residue and a predetermined occurrence frequency of each amino acid residue at each position of the CDR amino acid sequence, a predetermined capacity of a primary CDR amino acid sequence library, and/or a predetermined capacity of a secondary CDR amino acid sequence library; [0225] a processing apparatus, which is configured to be used for performing the operations of:

[0226] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0227] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in a primary CDR amino acid sequence library according to a predetermined capacity of the primary CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0228] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, and cycling same until the cumulative number of CDR amino acid sequences added to the primary CDR amino acid sequence library reaches the predetermined capacity of the primary CDR amino acid sequence library, thereby generating the primary CDR amino acid sequence library, wherein [0229] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0230] 3.1.1 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, or [0231] 3.1.2 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0232] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences;

[0233] 4. determining an occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library;

[0234] 5. according to the occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library, randomly selecting a sequence from the initial set of alternative CDR amino acid sequences and adding the selected sequence to a secondary CDR amino acid sequence library, until the cumulative number of CDR amino acid sequences added to the secondary CDR amino acid sequence library reaches the predetermined capacity of the secondary CDR amino acid sequence library, thereby generating the secondary CDR amino acid sequence library; and

[0235] 6. reverse-translating all the CDR amino acid sequences in the secondary CDR amino acid sequence library into CDR nucleotide sequences, thereby generating the CDR nucleotide sequence library; [0236] an output apparatus, which is configured for outputting the CDR nucleotide sequence library; [0237] a nucleic acid synthesis apparatus, which is configured for synthesizing CDR nucleic acids according to all the CDR nucleotide sequences in the CDR nucleotide sequence library, thereby generating the CDR nucleic acid library; and [0238] a peptide expression apparatus, which is configured for expressing all the CDR nucleic acids in the CDR nucleic acid library in an expression system, thereby generating the large CDR peptide library.

[0239] In a twentieth aspect, the present invention relates to a device for generating a large CDR peptide library, comprising the following apparatus: [0240] an input apparatus, which is configured for inputting a predetermined length of a CDR amino acid sequence, a predetermined type of an allowable amino acid residue and a predetermined occurrence frequency of each amino acid residue at each position of the CDR amino acid sequence, a predetermined capacity of a primary CDR amino acid sequence library, and/or a predetermined capacity of a secondary CDR amino acid sequence library; [0241] a processing apparatus, which is configured to be used for performing the operations of:

[0242] 1. determining all allowable CDR amino acid sequences according to a predetermined type of an allowable amino acid residue at each position of a CDR amino acid sequence, and optionally according to a specified excluded sequence, to produce a set of alternative CDR amino acid sequences;

[0243] 2. determining an allowable number for each amino acid residue at each position of the CDR amino acid sequence in a primary CDR amino acid sequence library according to a predetermined capacity of the primary CDR amino acid sequence library and a predetermined occurrence frequency of each allowable amino acid residue at each position of the CDR amino acid sequence;

[0244] 3. randomly selecting a CDR amino acid sequence from the set of alternative CDR amino acid sequences and adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, and cycling same until the cumulative number of CDR amino acid sequences added to the primary CDR amino acid sequence library reaches the predetermined capacity of the primary CDR amino acid sequence library, thereby generating the primary CDR amino acid sequence library, wherein [0245] 3.1 when the set of alternative CDR amino acid sequences has not been emptied, a CDR amino acid sequence is randomly selected from the set of alternative CDR amino acid sequences, wherein [0246] 3.1.1 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library does not result in that the cumulative number of corresponding amino acid residues at any position exceeds the allowable number of the corresponding amino acid residues at the position, adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library, or [0247] 3.1.2 when adding the selected CDR amino acid sequence to the primary CDR amino acid sequence library results in that the cumulative number of corresponding amino acid residues at at least one position exceeds the allowable number of the corresponding amino acid residues at the position, removing the selected CDR amino acid sequence from the set of alternative CDR amino acid sequences, or [0248] 3.2 when the set of alternative CDR amino acid sequences has been emptied, a CDR amino acid sequence is randomly selected from the initial set of alternative CDR amino acid sequences;

[0249] 4. determining an occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library; and

[0250] 5. according to the occurrence frequency of each CDR amino acid sequence in the primary CDR amino acid sequence library, randomly selecting a sequence from the initial set of alternative CDR amino acid sequences and adding the selected sequence to a secondary CDR amino acid sequence library, until the cumulative number of CDR amino acid sequences added to the secondary CDR amino acid sequence library reaches the predetermined capacity of the secondary CDR amino acid sequence library, thereby generating the secondary CDR amino acid sequence library; [0251] an output apparatus, which is configured for outputting the secondary CDR amino acid sequence library; and [0252] a peptide expression apparatus, which is configured for synthesizing CDR peptides according to all the CDR amino acid sequences in the secondary CDR amino acid sequence library, thereby generating the large CDR peptide library.

[0253] In one embodiment, the predetermined capacity of the primary CDR amino acid sequence library is about 1,000 to 100,000 amino acid sequences, for example about 1,000 to 90,000, 1,000 to 80,000, 1,000 to 75,000, 1,000 to 70,000, 1,000 to 60,000, 1,000 to 50,000, 1,000 to 40,000, 1,000 to 30,000, 1,000 to 25,000, 1,000 to 20,000, 1,000 to 10,000, 2,000 to 100,000, 2,500 to 100,000, 3,000 to 100,000, 4,000 to 100,000, 5,000 to 100,000, 6,000 to 100,000, 7,000 to 100,000, 7,500 to 100,000, 8,000 to 100,000, 9,000 to 100,000, or 10,000 to 100,000 amino acid sequences, for example about 1,000, 2,000, 2,500, 3,000, 4,000, 5,000, 6,000, 7,000, 7,500, 8,000, 9,000, 10,000, 20,000, 25,000, 30,000, 40,000, 50,000, 60,000, 70,000, 75,000, 80,000, 90,000, 100,000 amino acid sequences.

[0254] In one embodiment, the predetermined capacity of the secondary CDR amino acid sequence library is about 1 to 10000 times or even more, for example, about 10 to 1000 times, 10 to 900 times, 10 to 800 times, 10 to 700 times, 10 to 600 times, 10 to 500 times, 10 to 400 times, 10 to 300 times, 10 to 200 times, 10 to 100 times, 10 to 90 times, 10 to 80 times, 10 to 70 times, 10 to 60 times, 10 to 50 times, 10 to 40 times, 10 to 30 times, 10 to 20 times, 20 to 1000 times, 30 to 1000 times, 40 to 1000 times, 50 to 1000 times, 60 to 1000 times, 70 to 1000 times, 80 to 1000 times, 90 to 1000 times, 100 to 1000 times, 200 to 1000 times, 300 to 1000 times, 400 to 1000 times, 500 to 1000 times, 600 to 1000 times, 700 to 1000 times, 800 to 1000 times, or 900 to 1000 times, for example, about 10, 20, 25, 30, 40, 50, 60, 70, 75, 80, 90, 100, 200, 250, 300, 400, 500, 600, 700, 750, 800, 900, or 1000 times the predetermined capacity of the primary CDR amino acid sequence library.

[0255] The device of the present invention can further comprise a storage apparatus, which is configured to store an algorithm for performing the operations.

[0256] In a twenty-first aspect, the present invention relates to a computer program product, comprising a computer program instruction, wherein when the instruction is executed by a computer, the above-mentioned method is implemented and/or the above-mentioned device is operated.

[0257] In a twenty-second aspect, the present invention relates to a storage apparatus, which stores the above-mentioned computer program product.

[0258] In one embodiment, the CDR is antibody heavy chain CDR1, CDR2 and/or CDR3, and/or light chain CDR1, CDR2 and/or CDR3. In one embodiment, the antibody is a mammalian antibody, e.g., a rodent antibody (e.g., a mouse, rat or rabbit antibody) or a primate antibody (e.g., a cynomolgus or human antibody). In one embodiment, the antibody is a human antibody, a humanized antibody, or a chimeric antibody.

[0259] The present invention can be used in, but not limited to an antibody CDR. In fact, the present invention can be used for any peptide (alternatively referred to as oligopeptide, polypeptide, protein, amino acid polymer, etc.) of interest in diversity. For example, the present invention can be used for the diversity of acting site of one or both of two molecules that interact (e.g., recognize, bind, modify, cleave, etc.), e.g., antibody-antigen, receptor-ligand and enzyme-substrate. Moreover, the present invention can also be used for other polymer molecules of interest in diversity, such as polysaccharide or nucleic acid, especially functional, non-coding nucleic acid, such as functional RNA.

[0260] In one embodiment, the predetermined length of the CDR amino acid sequence is about 3 to 20 or more amino acid residues, for example about 3 to 15, 3 to 10, 3 to 5, 5 to 20, 5 to 15, 5 to 10, 5 to 7, 10 to 20, 10 to 15, or 15 to 20 amino acid residues, for example about 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 amino acid residues. The length of CDR amino acid sequences in a CDR library are generally the same. However, the length of CDR amino acid sequences in a CDR library can be different, and in this case, “deletion” is provided as an option for amino acids at one or more positions.

[0261] As mentioned above, the present invention can be used in, but not limited to CDR, or even to peptide. Therefore, the above content is also suitable for other sequences, such as nucleotide sequences. Furthermore, the present invention can also be used in, but not limited to the above-mentioned sequence length. A person skilled in the art would appreciate that the sequence length has a small effect on the implementation of the present invention, and the sequence complexity (i.e., the number of variable positions and the number of types of alternative amino acid/nucleotide residues at each variable position) has a great effect on the implementation of the present invention. In other words, the sequence of the present invention can comprise 3 to 20 or more, for example about 3 to 15, 3 to 10, 3 to 5, 5 to 20, 5 to 15, 5 to 10, 5 to 7, 10 to 20, 10 to 15, or 15 to 20, for example 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 variable positions. In this case, the full length of the sequence can be longer. The full length of a sequence is mainly affected by the efficiency of a synthesizer to synthesize the sequence. Variable positions can be completely contiguous (i.e., all variable positions are connected into one segment), completely discontinuous (i.e., any two variable positions are not connected), or neither (i.e., some but not all variable positions are connected into one or more segments, and there may also be one or more isolated variable positions).

[0262] In one embodiment, each position allows selection of about 1 to 20 common amino acid residues, e.g., about 2 to 10, 3 to 10, or 5 to 10 common amino acid residues, e.g., about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 common amino acid residues. In one embodiment, the number of types of amino acid residues allowed to be selected at each position is identical. In one embodiment, the number of types of amino acid residues allowed to be selected at each position is different. In one embodiment, the number of types of amino acid residues allowed to be selected at some positions is identical. In one embodiment, the number of types of amino acid residues allowed to be selected at some positions is different. In one embodiment, the number of types of amino acid residues allowed to be selected at all positions is identical. In one embodiment, the number of types of amino acid residues allowed to be selected at all positions is different. The present invention can be used in, but not limited to the 20 common amino acids, and can also be used in all known amino acids, especially in chemically synthesized peptide libraries.

[0263] As mentioned above, the present invention can be used in, but not limited to peptide, but can also be used in other polymer molecules. Therefore, the above content is also suitable for other building blocks such as nucleotide and monosaccharide.

[0264] In one embodiment, the (initial) set of alternative CDR amino acid sequences comprises about 10 to 1000 allowable CDR amino acid sequences, for example about 10 to 900, 10 to 800, 10 to 750, 10 to 700, 10 to 600, 10 to 500, 10 to 400, 10 to 300, 10 to 250, 10 to 200, 10 to 100, 10 to 90, 10 to 80, 10 to 75, 10 to 70, 10 to 60, 10 to 50, 10 to 40, 10 to 30, 10 to 25, 10 to 20, 20 to 1000, 25 to 1000, 30 to 1000, 40 to 1000, 50 to 1000, 60 to 1000, 70 to 1000, 75 to 1000, 80 to 1000, 90 to 1000, 100 to 1000, 200 to 1000, 250 to 1000, 300 to 1000, 400 to 1000, 500 to 1000, 600 to 1000, 700 to 1000, 750 to 1000, 800 to 1000, or 900 to 1000, for example about 10, 20, 25, 30, 40, 50, 60, 70, 75, 80, 90, 100, 200, 250, 300, 400, 500, 600, 700, 750, 800, 900, or 1000 allowable CDR amino acid sequences.

[0265] Generally, an amino acid sequence in a library is encoded by a nucleotide sequence (DNA sequence (in the case of expression using intracellular translation) or RNA sequence (in the case of expression using extracellular translation)). In this case, reverse translation is usually performed using codons that are unique or preferred (or most frequently occurring in nature) by the host cell or expression system. Alternatively, an amino acid sequence in a library can be encoded by multiple nucleotide sequences (e.g., due to codon redundancy). In this case, the capacity of the nucleotide sequence library may be larger than the capacity of the amino acid sequence library.

[0266] The methods for randomly selecting a sequence from an alternative sequence set are well known in the art. For example, the interval [0, 1] can be divided into n intervals in equal proportions according to the number n of the sequences in the alternative sequence set, and each interval corresponds to a sequence. A random number generator is then used to generate the number x {x∈R|0≤x≤1} according to the average distribution. The corresponding sequence is selected according to the subinterval to which x belongs. For another example, the choice function in random submodule of numpy module of the python software can be used, wherein parameter a is set as the set of alternative sequences.

[0267] The methods for randomly selecting a sequence from an (initial) set of alternative sequences in proportion (e.g., according to the occurrence frequency of each sequence in a primary library) are also well known in the art. For example, the interval [0, 1] can be divided into n intervals according to the number n of the sequences in the alternative sequence set, and each interval corresponds to a sequence. The size of each interval is proportional to its corresponding selection probability (i.e., the above-mentioned occurrence frequency). A random number generator is then used to generate the number x {x∈R|0≤x≤1} according to the average distribution. The corresponding sequence is selected according to the subinterval to which x belongs. For another example, the choice function in random submodule of numpy module of the python software can be used, wherein the parameter a is set as the set of alternative sequences, and parameter p is set as the selection probability of each sequence in the alternative sequence set (e.g., the occurrence frequency of each sequence in the primary library).

[0268] Methods, reagents and apparatus for the synthesis (including high-throughput synthesis) of a nucleic acid are well known in the art, such as the phosphoramidite method and B3 Synthesizer from CustomArray. Methods, reagents and apparatus for the synthesis (including high-throughput synthesis) of a peptide are well known in the art, such as the carbodiimide method and SOPHAS of Zinsser Analytic. Methods, reagents and apparatus for the expression (including high-throughput expression) of a peptide are well known in the art. The expression system may be a cell expression system or a cell-free expression system (e.g., a ribosomal expression system). The cell can be a prokaryotic or a eukaryotic cell, and can be a bacterial, fungal, plant or animal (especially mammalian) cell.

[0269] In one embodiment, the predetermined length of a CDR amino acid sequence, the predetermined type of an allowable amino acid residue and the predetermined occurrence frequency of each amino acid residue at each position of the CDR amino acid sequence, the predetermined capacity of a primary CDR amino acid sequence library, and/or the predetermined capacity of a secondary CDR amino acid sequence library can be input based on an input file (e.g., an EXCEL file). In one embodiment, a CDR amino acid sequence library, a primary and/or secondary CDR amino acid sequence library, and/or a CDR nucleotide sequence library can be output based on an output file (e.g., an EXCEL file). In one embodiment, the output file is transmitted to a nucleic acid synthesis apparatus and/or a peptide expression apparatus to generate a corresponding nucleic acid and/or peptide library.

[0270] In this context, “about” means the error range well-recognized in the art, or ±10%, 5%, 3% or 1% of the indicated value.

EXAMPLES

Example 1

[0271] In the example, a (small, simple) antibody heavy chain CDR1 library was generated, with requirements as follows: the final library comprises 10000 amino acid sequences, the length of each sequence is 5 amino acid residues, and the allowable types of amino acids at each position and the ratio thereof are as shown in Table 1.

TABLE-US-00001 TABLE 1 Amino acid distribution set in heavy chain CDR1 library H31 H32 H33 H34 H35 Ala (A) 45% Asn (N) 25% Gly (G) 55% His (H) 40% Ile (I) 60% Met (M) 40% Ser (S) 100% 35% Tyr (Y) 100%

[0272] Step 1. All possible amino acid sequences were listed as an alternative sequence set. In this example, other than the amino acid distribution shown in Table 1, there are no additional limitations. The alternative sequence set consists of 12 sequences, as shown in Table 2.

TABLE-US-00002 TABLE 2 Alternative sequence set of   heavy chain CDR1 library No. Sequence  1 SYAIN  2 SYAIH  3 SYAIS  4 SYAMN  5 SYAMH  6 SYAMS  7 SYGIN  8 SYGIH  9 SYGIS 10 SYGMN 11 SYGMH 12 SYGMS

[0273] Step 2. For the library comprising 10000 sequences and having the amino acid distribution shown in Table 1, the given number of various amino acids at each position thereof was calculated, as shown in Table 3.

TABLE-US-00003 TABLE 3 Given number for each amino acid at each position in heavy chain CDR1 library H31 H32 H33 H34 H35 Ala (A) 4500 Asn (N) 2500 Gly (G) 5500 His (H) 4000 Ile (I) 6000 Met (M) 4000 Ser (S) 10000 3500 Tyr (Y) 10000

[0274] Step 3. A sequence was randomly selected from an alternative sequence set for judging whether the addition of the sequence to a library will cause the number of certain amino acids at a certain position to exceed the given number of the amino acids at the position shown in Table 3, wherein if the number of certain amino acids at a certain position does not exceed the given number, then the sequence is added to the library, whereas if the number of certain amino acids at a certain position exceeds the given number, then the sequence is not added to the library and removed from the alternative sequence set.

[0275] The total number of sequences in the library was checked, wherein if the total number reached 10000, then the selection and storage tasks were completed, whereas if the total number did not reach 10000, then the selection and storage tasks were continued.

[0276] Step 4. After the above-mentioned operations, the actual number of various sequences in the generated library is as shown in Table 4. The library size of the example is 10000 sequences, and no expansion operation is required.

TABLE-US-00004 TABLE 4 Actual number for each sequence  in heavy chain CDR1 library No. Sequence Number  1 SYAIN  610  2 SYAIH  943  3 SYAIS  962  4 SYAMN  607  5 SYAMH  708  6 SYAMS  670  7 SYGIN  661  8 SYGIH 1658  9 SYGIS 1166 10 SYGMN  622 11 SYGMH  691 12 SYGMS  702

[0277] By statistics, the distribution ratio of various amino acids at each position in the generated library is as shown in Table 5 and is exactly identical to the expected amino acid distribution in Table 1.

TABLE-US-00005 TABLE 5 Actual amino acid distribution in heavy chain CDR1 library H31 H32 H33 H34 H35 Ala (A) 45.0% Asn (N) 25.0% Gly (G) 55.0% His (H) 40.0% Ile (I) 60.0% Met (M) 40.0% Ser (S) 100.0% 35.0% Tyr (Y) 100.0%

[0278] Step 5. The amino acid sequences in the library were reverse-translated into DNA sequences.

[0279] Step 6. A high-throughput gene synthesis was performed with chips.

Example 2

[0280] In the example, a (large, simple) antibody heavy chain CDR1 library was generated, with requirements as follows: the final library comprises 1 000 000 amino acid sequences, the length of each sequence is 5 amino acid residues, and the allowable types of amino acids at each position and the ratio thereof are as shown in Table 6. In this example, the sequence distribution in a primary library of 10000 sequences was determined and then expanded to a secondary library of 1,000,000 sequences.

TABLE-US-00006 TABLE 6 Amino acid distribution set in heavy chain CDR1 library H31 H32 H33 H34 H35 Ala (A) 45% Asn (N) 25% Gly (G) 55% His (H) 40% Ile (I) 60% Met (M) 40% Ser (S) 100% 35% Tyr (Y) 100%

[0281] Step 1. All possible amino acid sequences were listed as an alternative sequence set. In this example, other than the amino acid distribution shown in Table 6, there are no additional limitations. The alternative sequence set consists of 12 sequences, as shown in Table 7.

TABLE-US-00007 TABLE 7 Alternative sequence set of  heavy chain CDR1 library No. Sequence  1 SYAIN  2 SYAIH  3 SYAIS  4 SYAMN  5 SYAMH  6 SYAMS  7 SYGIN  8 SYGIH  9 SYGIS 10 SYGMN 11 SYGMH 12 SYGMS

[0282] Step 2. For the primary library comprising 10000 sequences and having the amino acid distribution shown in Table 6, the given number of various amino acids at each position thereof was calculated, and the results are as shown in Table 8.

TABLE-US-00008 TABLE 8 Given number for each amino acid at each position in primary library H31 H32 H33 H34 H35 Ala (A) 4500 Asn (N) 2500 Gly (G) 5500 His (H) 4000 Ile (I) 6000 Met (M) 4000 Ser (S) 10000 3500 Tyr (Y) 10000

[0283] Step 3. A sequence was randomly selected from an alternative sequence set for judging whether the addition of the sequence to a primary library will cause the number of certain amino acids at a certain position to exceed the given number of the amino acids at the position shown in Table 8, wherein if the number of certain amino acids at a certain position does not exceed the given number, then the sequence is added to the primary library, whereas if the number of certain amino acids at a certain position exceeds the given number, then the sequence is not added to the primary library and removed from the alternative sequence set.

[0284] The total number of sequences in the primary library was checked, wherein if the total number reached 10000, then the selection and storage tasks were completed, whereas if the total number did not reach 10000, then the selection and storage tasks were continued.

[0285] Step 4. After the above-mentioned operations, the actual number and proportion of various sequences in the generated primary library are as shown in Table 9. The library size of the example is 1000000 sequences, and expansion operation is required. The actual proportion of various sequences in the primary library was used as the sampling probability of the secondary library.

Table 9: Actual number and proportion of each sequence in primary library

[0286] The proportion shown in Table 9 was used as the probability distribution, and 1000000 sequences were re-selected from the alternative sequence set to generate a secondary library. The actual number of various sequences in the secondary generated library is as shown in Table 10.

TABLE-US-00009 TABLE 10 Actual number for each sequence in  heavy chain CDR1 library No. Sequence Number  1 SYAIN  61407  2 SYAIH  94304  3 SYAIS  96356  4 SYAMN  60931  5 SYAMH  70800  6 SYAMS  67183  7 SYGIN  65934  8 SYGIH 164791  9 SYGIS 116449 10 SYGMN  62122 11 SYGMH  68925 12 SYGMS  70798

[0287] By statistics, the distribution ratio of various amino acids at each position in the generated secondary library is as shown in Table 11 and is basically identical to the expected amino acid distribution in Table 6.

TABLE-US-00010 TABLE 11 Actual amino acid distribution in heavy chain CDR1 library H31 H32 H33 H34 H35 Ala (A) 45.10% Asn (N) 25.04% Gly (G) 54.90% His (H) 39.88% Ile (I) 59.92% Met (M) 40.08% Ser (S) 100.00% 35.08% Tyr (Y) 100.00%

[0288] Step 5. The amino acid sequences in the secondary library were reverse-translated into DNA sequences.

[0289] Step 6. A high-throughput gene synthesis was performed with chips.

[0290] The square of the coefficient of determination, i.e., R.sup.2 was used to calculate the degree of agreement between the actual amino acid distribution of multiple selection positions H33, H34 and H35 and the expected amino acid distribution thereof. The calculated R.sup.2 values for the positions are respectively: 0.9996 for H33; 0.9999 for H34; and 0.9998 for H35.

Example 3

[0291] In the example, a (small, complex) antibody heavy chain CDR1 library was generated, with requirements as follows: the final library comprises 10000 amino acid sequences, the length of each sequence is 5 amino acid residues, and the allowable types of amino acids at each position and the ratio thereof are as shown in Table 12.

TABLE-US-00011 TABLE 12 Amino acid distribution set in heavy chain CDR1 library H31 H32 H33 H34 H35 Ala (A) 5.5% 45.0% Asn (N) 6.5% 25.0% Asp (D) 7.5% Gly (G) 8.5% 55.0% His (H) 9.5% 40.0% Ile (I) 10.5% 60.0% Leu (L) 11.5% Met (M) 12.5% 40.0% Ser (S) 100.0% 13.5% 35.0% Tyr (Y) 14.5%

[0292] Step 1. All the possible amino acid sequences were listed as alternative sequences. In this example, other than the amino acid distribution shown in Table 12, there are no additional limitations. The alternative sequence set consists of 120 sequences, as shown in Table 13.

TABLE-US-00012 TABLE 13 Alternative sequence set of  heavy chain CDR1 library No. Sequence   1 SAAIS   2 SAAIN   3 SAAIH   4 SAAMS   5 SAAMN   6 SAAMH   7 SAGIS   8 SAGIN   9 SAGIH  10 SAGMS  11 SAGMN  12 SAGMH  13 SNAIS  14 SNAIN  15 SNAIH  16 SNAMS  17 SNAMN  18 SNAMH  19 SNGIS  20 SNGIN  21 SNGIH  22 SNGMS  23 SNGMN  24 SNGMH  25 SDAIS  26 SDAIN  27 SDAIH  28 SDAMS  29 SDAMN  30 SDAMH  31 SDGIS  32 SDGIN  33 SDGIH  34 SDGMS  35 SDGMN  36 SDGMH  37 SGAIS  38 SGAIN  39 SGAIH  40 SGAMS  41 SGAMN  42 SGAMH  43 SGGIS  44 SGGIN  45 SGGIH  46 SGGMS  47 SGGMN  48 SGGMH  49 SHAIS  50 SHAIN  51 SHAIH  52 SHAMS  53 SHAMN  54 SHAMH  55 SHGIS  56 SHGIN  57 SHGIH  58 SHGMS  59 SHGMN  60 SHGMH  61 SIAIS  62 SIAIN  63 SIAIH  64 SIAMS  65 SIAMN  66 SIAMH  67 SIGIS  68 SIGIN  69 SIGIH  70 SIGMS  71 SIGMN  72 SIGMH  73 SLAIS  74 SLAIN  75 SLAIH  76 SLAMS  77 SLAMN  78 SLAMH  79 SLGIS  80 SLGIN  81 SLGIH  82 SLGMS  83 SLGMN  84 SLGMH  85 SMAIS  86 SMAIN  87 SMAIH  88 SMAMS  89 SMAMN  90 SMAMH  91 SMGIS  92 SMGIN  93 SMGIH  94 SMGMS  95 SMGMN  96 SMGMH  97 SSAIS  98 SSAIN  99 SSAIH 100 SSAMS 101 SSAMN 102 SSAMH 103 SSGIS 104 SSGIN 105 SSGIH 106 SSGMS 107 SSGMN 108 SSGMH 109 SYAIS 110 SYAIN 111 SYAIH 112 SYAMS 113 SYAMN 114 SYAMH 115 SYGIS 116 SYGIN 117 SYGIH 118 SYGMS 119 SYGMN 120 SYGMH

[0293] Step 2. For the library comprising 10000 sequences and having the amino acid distribution shown in Table 13, the given number of various amino acids at each position thereof was calculated, and the results are as shown in Table 14.

TABLE-US-00013 TABLE 14 Given number for each amino acid at each position in heavy chain CDR1 library H31 H32 H33 H34 H35 Ala (A) 550 4500 Asn (N) 650 2500 Asp (D) 750 Gly (G) 850 5500 His (H) 950 4000 Ile (I) 1050 6000 Leu (L) 1150 Met (M) 1250 4000 Ser (S) 10000 1350 3500 Tyr (Y) 1450

[0294] Step 3. A sequence was randomly selected from an alternative sequence set for judging whether the addition of the sequence to a library will cause the number of certain amino acids at a certain position to exceed the given number of the amino acids at the position shown in Table 14, wherein if the number of certain amino acids at a certain position does not exceed the given number, then the sequence is added to the library, whereas if the number of certain amino acids at a certain position exceeds the given number, then the sequence is not added to the library and removed from the alternative sequence set.

[0295] The total number of sequences in the library was checked, wherein if the total number reached 10000, then the selection and storage tasks were completed, whereas if the total number did not reach 10000, then the selection and storage tasks were continued.

[0296] Step 4. After the above-mentioned operations, the actual number of various sequences in the generated library is shown in Table 15. The library size of the example is 10000 sequences, and no expansion operation is required.

TABLE-US-00014 TABLE 15 Actual number for each sequence  in heavy chain CDR1 library No. Sequence Number   1 SAAIS  38   2 SAAIN  45   3 SAAIH  45   4 SAAMS  54   5 SAAMN  65   6 SAAMH  45   7 SAGIS  41   8 SAGIN  52   9 SAGIH  49  10 SAGMS  35  11 SAGMN  43  12 SAGMH  38  13 SNAIS  48  14 SNAIN  49  15 SNAIH  70  16 SNAMS  57  17 SNAMN  53  18 SNAMH  48  19 SNGIS  56  20 SNGIN  42  21 SNGIH  59  22 SNGMS  63  23 SNGMN  56  24 SNGMH  49  25 SDAIS  61  26 SDAIN  61  27 SDAIH  70  28 SDAMS  72  29 SDAMN  58  30 SDAMH  60  31 SDGIS  66  32 SDGIN  61  33 SDGIH  72  34 SDGMS  58  35 SDGMN  56  36 SDGMH  55  37 SGAIS  90  38 SGAIN  74  39 SGAIH  76  40 SGAMS  72  41 SGAMN  86  42 SGAMH  77  43 SGGIS  69  44 SGGIN  58  45 SGGIH  61  46 SGGMS  70  47 SGGMN  51  48 SGGMH  67  49 SHAIS 102  50 SHAIN  70  51 SHAIH  92  52 SHAMS  97  53 SHAMN  64  54 SHAMH  81  55 SHGIS  90  56 SHGIN  63  57 SHGIH  79  58 SHGMS  76  59 SHGMN  58  60 SHGMH  78  61 SIAIS 100  62 SIAIN  75  63 SIAIH  91  64 SIAMS  87  65 SIAMN  65  66 SIAMH  73  67 SIGIS 141  68 SIGIN  67  69 SIGIH 155  70 SIGMS  73  71 SIGMN  54  72 SIGMH  69  73 SLAIS 107  74 SLAIN  70  75 SLAIH 127  76 SLAMS  56  77 SLAMN  59  78 SLAMH  83  79 SLGIS 186  80 SLGIN  61  81 SLGIH 164  82 SLGMS  76  83 SLGMN  65  84 SLGMH  96  85 SMAIS 128  86 SMAIN  54  87 SMAIH 104  88 SMAMS  88  89 SMAMN  70  90 SMAMH  62  91 SMGIS 205  92 SMGIN  56  93 SMGIH 277  94 SMGMS  64  95 SMGMN  67  96 SMGMH  75  97 SSAIS 115  98 SSAIN  80  99 SSAIH 105 100 SSAMS  77 101 SSAMN  69 102 SSAMH  71 103 SSGIS 173 104 SSGIN  76 105 SSGIH 374 106 SSGMS  81 107 SSGMN  71 108 SSGMH  58 109 SYAIS 103 110 SYAIN  72 111 SYAIH 113 112 SYAMS  72 113 SYAMN  77 114 SYAMH  67 115 SYGIS 180 116 SYGIN  51 117 SYGIH 481 118 SYGMS  73 119 SYGMN  76 120 SYGMH  84

[0297] By statistics, the distribution ratio of various amino acids at each position in the generated library is as shown in Table 16 and is almost identical to the expected amino acid distribution in Table 12.

TABLE-US-00015 TABLE 16 Actual amino acid distribution in heavy chain CDR1 library H31 H32 H33 H34 H35 Ala (A) 5.50% 45.00% Asn (N) 6.50% 25.00% Asp (D) 7.50% Gly (G) 8.51% 55.00% His (H) 9.50% 40.00% Ile (I) 10.50% 60.00% Leu (L) 11.50% Met (M) 12.50% 40.00% Ser (S) 100.00% 13.50% 35.00% Tyr (Y) 14.49%

[0298] The above results demonstrate that in the case that there are many optional sequences and the amino acid distribution is relatively complex, the method of the present invention can also obtain good results.

[0299] Step 5. The amino acid sequences in the library were reverse-translated into DNA sequences.

[0300] Step 6. A high-throughput gene synthesis was performed with chips.

[0301] The square of the coefficient of determination, i.e., R.sup.2, was used to calculate the degree of agreement between the actual amino acid distribution of multiple selection positions H32, H33, H34 and H35 and the expected amino acid distribution thereof. The calculated R.sup.2 values for the positions are respectively: 0.999998 for H32; 1.000000 for H33; 1.000000 for H34; and 1.000000 for H35.