NOVEL RNA THERAPEUTICS AND USES THEREOF
20230022590 · 2023-01-26
Inventors
- Rebecca Ruth Miles (Pendleton, IN)
- Jibo WANG (Carmel, IN, US)
- Melissa Ann BELLINGER (Zionsville, IN, US)
- Thomas Patrick BEYER (Zionsville, IN, US)
- Christine Chih-Tao CHENG (Carmel, IN, US)
- MariJean EGGEN (Brownsburg, IN, US)
- Gregory Lawrence LACKNER (Indianapolis, IN, US)
Cpc classification
C12N15/113
CHEMISTRY; METALLURGY
C12N2320/32
CHEMISTRY; METALLURGY
A61K47/549
HUMAN NECESSITIES
International classification
C12N15/113
CHEMISTRY; METALLURGY
Abstract
The present disclosure relates to novel RNAi agents designed to decrease the expression of ANGPTL8 in the liver, where the RNAi agents comprise delivery moieties conjugated to oligonucleotides optionally via a linker. The RNAi agents are useful in the treatment of diseases involving the regulation of ANGPTL8 expression.
Claims
1. An RNA interference (RNAi) agent comprising a delivery moiety of Formula I: ##STR00008## wherein R comprises a sense strand and an antisense strand, wherein the antisense strand comprises at least 15 contiguous nucleotides of a sequence selected from the group consisting of SEQ ID NOs: 405-525, and wherein the sense strand and the antisense strand form a region of complementarity of at least 15 nucleotides, and wherein the sense strand and antisense strand are each independently 18 to 23 nucleotides in length, and optionally wherein the sense strand and antisense strand each independently comprise one or more modified nucleotides, and optionally wherein the sense strand and the antisense strand each independently comprise one or more modified internucleotide linkages, and wherein R is optionally conjugated to Formula I via a linker.
2. The RNAi agent of claim 1, wherein the antisense strand comprises at least 18 contiguous nucleotides of a sequence selected from the group consisting of SEQ ID NOs: 405-525.
3. The RNAi agent of claim 2, wherein the antisense strand comprises at least 18 contiguous nucleotides of a sequence selected from the group consisting of SEQ ID NOs: 405, 408, 412, 413, 414, 415, 418, 420, 425, 426, 428, 429, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441, 442, 443, 444, 445, 446, 448, 449, 451, 452, 454, 457, 458, 459, 463, 464, 465, 466, 467, 468, 469, 471, 472, 473, 474, 475, 476, 479, 490, 491, 492, 493, 495, 499, 500, 501,502, 503, 504, 505, 506, 507, 508, and 509.
4. The RNAi agent of claim 3, wherein the antisense strand is 23 nucleotides in length.
5. The RNAi agent of claim 4, wherein the sense strand is 21 nucleotides in length.
6. The RNAi agent of claim 5, wherein the antisense strand is selected from the group consisting of SEQ ID NOs: 231-361, or a sequence having at least 90% sequence identity thereto.
7. The RNAi agent of claim 6, wherein the sense strand is selected from the group consisting of SEQ ID NOs: 124-230, or a sequence having at least 90% sequence identity thereto.
8. The RNAi agent of claim 7, wherein, in the region of complementarity comprises 0, 1, 2, or 3 mismatches between the sense strand and the antisense strand.
9. The RNAi agent of claim 8, wherein the sense strand and the antisense strand each independently comprise one or more modified nucleotides and the one or more modified nucleotides are independently 2′ fluoro modified nucleotides or 2′-O-methyl modified nucleotides.
10. The RNAi agent of claim 9, wherein each nucleotide of the sense strand and each nucleotide of the antisense strand is a modified nucleotide.
11. The RNAi agent of claim 10, wherein the sense strand and antisense strand each independently comprise one or more modified internucleotide linkages, and wherein each modified internucleotide linkage is a phosphorothioate linkage.
12. The RNAi agent of claim 11, wherein the sense strand and antisense strand each independently comprise four phosphorothioate linkages.
13. The RNAi agent of claim 12, wherein the 5′ nucleotide of the antisense strand comprises a phosphate group or a phosphate analog.
14. The RNAi agent of claim 13, wherein the antisense strand comprises a sequence selected from the group consisting of SEQ ID NOs: 367-372 and 389-404, or a sequence having at least 90% sequence identity thereto.
15. The RNAi agent of claim 14, wherein the sense strand comprises a sequence selected from the group consisting of SEQ ID NOs: 361-366 and 373-388, or a sequence having at least 90% sequence identity thereto.
16. The RNAi agent of claim 15, wherein the sense strand and antisense strand are a pair of oligonucleotide sequences selected from the group consisting of: a. a sense strand having the sequence set forth in SEQ ID NO:361, or a sequence having at least 90% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:367, or a sequence having at least 90% sequence identity thereto; b. a sense strand having the sequence set forth in SEQ ID NO:362, or a sequence having at least 90% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:368, or a sequence having at least 90% sequence identity thereto; c. a sense strand having the sequence set forth in SEQ ID NO:363, or a sequence having at least 90% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:369, or a sequence having at least 90% sequence identity thereto; d. a sense strand having the sequence set forth in SEQ ID NO:364, or a sequence having at least 90% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:370, or a sequence having at least 90% sequence identity thereto; e. a sense strand having the sequence set forth in SEQ ID NO:365, or a sequence having at least 90% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:371, or a sequence having at least 90% sequence identity thereto; f. a sense strand having the sequence set forth in SEQ ID NO:366, or a sequence having at least 90% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:372, or a sequence having at least 90% sequence identity thereto; g. a sense strand having the sequence set forth in SEQ ID NO:373, or a sequence having at least 90% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:389, or a sequence having at least 90% sequence identity thereto; h. a sense strand having the sequence set forth in SEQ ID NO:374, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO: 390 or a sequence having at least 90% sequence identity thereto; i. a sense strand having the sequence set forth in SEQ ID NO:375, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:391, or a sequence having at least 90% sequence identity thereto; j. a sense strand having the sequence set forth in SEQ ID NO:376, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:392, or a sequence having at least 90% sequence identity thereto; k. a sense strand having the sequence set forth in SEQ ID NO:377, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:393, or a sequence having at least 90% sequence identity thereto; l. a sense strand having the sequence set forth in SEQ ID NO:378, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:394, or a sequence having at least 90% sequence identity thereto; m. a sense strand having the sequence set forth in SEQ ID NO:379, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:395, or a sequence having at least 90% sequence identity thereto; n. a sense strand having the sequence set forth in SEQ ID NO:380 or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:396, or a sequence having at least 90% sequence identity thereto; o. a sense strand having the sequence set forth in SEQ ID NO: 381, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:396, or a sequence having at least 90% sequence identity thereto; p. a sense strand having the sequence set forth in SEQ ID NO:382, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:397, or a sequence having at least 90% sequence identity thereto; q. a sense strand having the sequence set forth in SEQ ID NO:383, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:398, or a sequence having at least 90% sequence identity thereto; r. a sense strand having the sequence set forth in SEQ ID NO:384, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:399, or a sequence having at least 90% sequence identity thereto; s. a sense strand having the sequence set forth in SEQ ID NO:385, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:400, or a sequence having at least 90% sequence identity thereto; t. a sense strand having the sequence set forth in SEQ ID NO:386, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:401, or a sequence having at least 90% sequence identity thereto; u. a sense strand having the sequence set forth in SEQ ID NO:387, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:402, or a sequence having at least 90% sequence identity thereto; v. a sense strand having the sequence set forth in SEQ ID NO:388, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:403, or a sequence having at least 90% sequence identity thereto; and w. a sense strand having the sequence set forth in SEQ ID NO:389, or a sequence having at least 90% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:404, or a sequence having at least 90% sequence identity thereto.
17. The RNAi agent of claim 15, wherein the sense strand and antisense strand are a pair of oligonucleotide sequences selected from the group consisting of: a. a sense strand having the sequence set forth in SEQ ID NO:361, or a sequence having at least 95% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:367, or a sequence having at least 95% sequence identity thereto; b. a sense strand having the sequence set forth in SEQ ID NO:362, or a sequence having at least 95% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:368, or a sequence having at least 95% sequence identity thereto; c. a sense strand having the sequence set forth in SEQ ID NO:363, or a sequence having at least 95% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:369, or a sequence having at least 95% sequence identity thereto; d. a sense strand having the sequence set forth in SEQ ID NO:364, or a sequence having at least 95% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:370, or a sequence having at least 95% sequence identity thereto; e. a sense strand having the sequence set forth in SEQ ID NO:365, or a sequence having at least 95% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:371, or a sequence having at least 95% sequence identity thereto; f. a sense strand having the sequence set forth in SEQ ID NO:366, or a sequence having at least 95% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:372, or a sequence having at least 95% sequence identity thereto; g. a sense strand having the sequence set forth in SEQ ID NO:373, or a sequence having at least 95% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:389, or a sequence having at least 95% sequence identity thereto; h. a sense strand having the sequence set forth in SEQ ID NO:374, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO: 390 or a sequence having at least 95% sequence identity thereto; i. a sense strand having the sequence set forth in SEQ ID NO:375, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:391, or a sequence having at least 95% sequence identity thereto; j. a sense strand having the sequence set forth in SEQ ID NO:376, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:392, or a sequence having at least 95% sequence identity thereto; k. a sense strand having the sequence set forth in SEQ ID NO:377, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:393, or a sequence having at least 95% sequence identity thereto; l. a sense strand having the sequence set forth in SEQ ID NO:378, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:394, or a sequence having at least 95% sequence identity thereto; m. a sense strand having the sequence set forth in SEQ ID NO:379, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:395, or a sequence having at least 95% sequence identity thereto; n. a sense strand having the sequence set forth in SEQ ID NO:380 or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:396, or a sequence having at least 95% sequence identity thereto; o. a sense strand having the sequence set forth in SEQ ID NO: 381, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:396, or a sequence having at least 95% sequence identity thereto; p. a sense strand having the sequence set forth in SEQ ID NO:382, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:397, or a sequence having at least 95% sequence identity thereto; q. a sense strand having the sequence set forth in SEQ ID NO:383, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:398, or a sequence having at least 95% sequence identity thereto; r. a sense strand having the sequence set forth in SEQ ID NO:384, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:399, or a sequence having at least 95% sequence identity thereto; s. a sense strand having the sequence set forth in SEQ ID NO:385, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:400, or a sequence having at least 95% sequence identity thereto; t. a sense strand having the sequence set forth in SEQ ID NO:386, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:401, or a sequence having at least 95% sequence identity thereto; u. a sense strand having the sequence set forth in SEQ ID NO:387, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:402, or a sequence having at least 95% sequence identity thereto; v. a sense strand having the sequence set forth in SEQ ID NO:388, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:403, or a sequence having at least 95% sequence identity thereto; and w. a sense strand having the sequence set forth in SEQ ID NO:389, or a sequence having at least 95% sequence identity thereto, and an antisense strand having the sequence set forth in SEQ ID NO:404, or a sequence having at least 95% sequence identity thereto.
18. The RNAi agent of claim 16, wherein the sense strand and antisense strand are a pair of oligonucleotide sequences selected from the group consisting of: a. a sense strand having the sequence set forth in SEQ ID NO:361, or a sequence having at least 90% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:367, or a sequence having at least 90% sequence identity thereto; b. a sense strand having the sequence set forth in SEQ ID NO:362, or a sequence having at least 90% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:368, or a sequence having at least 90% sequence identity thereto; c. a sense strand having the sequence set forth in SEQ ID NO:363, or a sequence having at least 90% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:369, or a sequence having at least 90% sequence identity thereto; d. a sense strand having the sequence set forth in SEQ ID NO:364, or a sequence having at least 90% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:370, or a sequence having at least 90% sequence identity thereto; and e. a sense strand having the sequence set forth in SEQ ID NO:365, or a sequence having at least 90% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:371, or a sequence having at least 90% sequence identity thereto.
19. The RNAi agent of claim 17, wherein the sense strand and antisense strand are a pair of oligonucleotide sequences selected from the group consisting of: a. a sense strand having the sequence set forth in SEQ ID NO:361, or a sequence having at least 95% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:367, or a sequence having at least 95% sequence identity thereto; b. a sense strand having the sequence set forth in SEQ ID NO:362, or a sequence having at least 95% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:368, or a sequence having at least 95% sequence identity thereto; c. a sense strand having the sequence set forth in SEQ ID NO:363, or a sequence having at least 95% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:369, or a sequence having at least 95% sequence identity thereto; d. a sense strand having the sequence set forth in SEQ ID NO:364, or a sequence having at least 95% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:370, or a sequence having at least 95% sequence identity thereto; and e. a sense strand having the sequence set forth in SEQ ID NO:365, or a sequence having at least 95% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:371, or a sequence having at least 95% sequence identity thereto.
20. The RNAi agent of claim 18, wherein the sense strand and antisense strand are a pair of oligonucleotide sequences selected from the group consisting of: a. a sense strand having the sequence set forth in SEQ ID NO:361, or a sequence having at least 90% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:367, or a sequence having at least 90% sequence identity thereto; and b. a sense strand having the sequence set forth in SEQ ID NO:365, or a sequence having at least 90% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:371, or a sequence having at least 90% sequence identity thereto.
21. The RNAi agent of claim 19, wherein the sense strand and antisense strand are a pair of oligonucleotide sequences selected from the group consisting of: a. a sense strand having the sequence set forth in SEQ ID NO:361, or a sequence having at least 95% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:367, or a sequence having at least 95% sequence identity thereto; and b. a sense strand having the sequence set forth in SEQ ID NO:365, or a sequence having at least 95% sequence identity thereto, and the antisense strand having the sequence set forth in SEQ ID NO:371, or a sequence having at least 95% sequence identity thereto.
22. The RNAi agent of claim 21, wherein R is conjugated to Formula I via a linker.
23. The RNAi agent of claim 22, wherein R is conjugated to Formula I via a linker, and wherein linker comprises a linker of Formula II having connection points A and B or the linker comprises Formula III having connection points C and D, and wherein connection point A or connection point C is conjugated to Formula I and connection point B or connection point D is conjugated to a phosphate group which is conjugated to R; ##STR00009##
24. The RNAi agent of claim 23, wherein R is conjugated to Formula I via a linker, and wherein the linker is a linker comprising Formula III having connection points C and D, and wherein connection point C is conjugated to Formula I and connection point D is conjugated to a phosphate group which is conjugated to R; ##STR00010##
25. The RNAi agent of claim 24, wherein the sense strand and the antisense strand are a pair of oligonucleotide sequences selected from the group consisting of: a. a sense strand consisting of the sequence set forth in SEQ ID NO:361 and an antisense strand consisting of the sequence set forth in SEQ ID NO:367; and b. a sense strand consisting of the sequence set forth in SEQ ID NO:365 and an antisense strand consisting of the sequence set forth in SEQ ID NO:371.
26. The RNAi agent of claim 25, wherein the RNAi agent is capable of decreasing expression of the ANGPTL8 gene in a liver cell.
27. A method of treating dyslipidemia in a patient in need thereof, comprising administering the RNAi agent of claim 1.
Description
EXAMPLE 1
[0159]
TABLE-US-00001 TABLE 1 Target and antisense sequences for designed siRNAs SEQ Start End SEQ 18 mer ID Posi- Posi 18mer Target ID Antisense NO tion tion DNA NO RNA (DNA on on Sequence (RNA sequence SEQ) DNA DNA (5′-3′) SEQ) (5′-3′) 3 120 137 AGCTGACCCTGCTCTTCC 405 GGAAGAGCAG GGUCAGCU 4 141 158 GGACCCTGCAGCTGGGCC 406 GGCCCAGCUG CAGGGUCC 5 150 167 AGCTGGGCCAGGCCCTCA 407 UGAGGGCCUG GCCCAGCU 6 185 202 ACGGAGGGACGGCTGACA 408 UGUCAGCCGU CCCUCCGU 7 186 203 CGGAGGGACGGCTGACAA 409 UUGUCAGCCG UCCCUCCG 8 191 208 GGACGGCTGACAAAGGCC 410 GGCCUUUGUC AGCCGUCC 9 194 211 CGGCTGACAAAGGCCAGG 411 CCUGGCCUUU GUCAGCCG 10 195 212 GGCTGACAAAGGCCAGGA 412 UCCUGGCCUU UGUCAGCC 11 197 214 CTGACAAAGGCCAGGAAC 413 GUUCCUGGCC UUUGUCAG 12 210 227 GGAACAGCCTGGGTCTCT 414 AGAGACCCAG GCUGUUCC 13 211 228 GAACAGCCTGGGTCTCTA 415 UAGAGACCCA GGCUGUUC 14 215 232 AGCCTGGGTCTCTATGGC 416 GCCAUAGAGA CCCAGGCU 15 217 234 CCTGGGTCTCTATGGCCG 417 CGGCCAUAGA GACCCAGG 16 218 235 CTGGGTCTCTATGGCCGC 418 GCGGCCAUAG AGACCCAG 17 219 236 TGGGTCTCTATGGCCGCA 419 UGCGGCCAUA GAGACCCA 18 220 237 GGGTCTCTATGGCCGCAC 420 GUGCGGCCAU AGAGACCC 19 259 276 GGTCAGCCGGGGCCGGGA 421 UCCCGGCCCC GGCUGACC 20 267 284 GGGGCCGGGATGCAGCCC 422 GGGCUGCAUC CCGGCCCC 21 270 287 GCCGGGATGCAGCCCAGG 423 CCUGGGCUGC AUCCCGGC 22 271 288 CCGGGATGCAGCCCAGGA 424 UCCUGGGCUG CAUCCCGG 23 273 290 GGGATGCAGCCCAGGAAC 425 GUUCCUGGGC UGCAUCCC 24 274 291 GGATGCAGCCCAGGAACT 426 AGUUCCUGGG CUGCAUCC 25 281 298 GCCCAGGAACTTCGGGCA 427 UGCCCGAAGU UCCUGGGC 26 282 299 CCCAGGAACTTCGGGCAA 428 UUGCCCGAAG UUCCUGGG 27 283 300 CCAGGAACTTCGGGCAAG 429 CUUGCCCGAA GUUCCUGG 28 284 301 CAGGAACTTCGGGCAAGC 430 GCUUGCCCGA AGUUCCUG 29 285 302 AGGAACTTCGGGCAAGCC 431 GGCUUGCCCG AAGUUCCU 30 286 303 GGAACTTCGGGCAAGCCT 432 AGGCUUGCCC GAAGUUCC 31 287 304 GAACTTCGGGCAAGCCTG 433 CAGGCUUGCC CGAAGUUC 32 290 307 CTTCGGGCAAGCCTGTTG 434 CAACAGGCUU GCCCGAAG 33 291 308 TTCGGGCAAGCCTGTTGG 435 CCAACAGGCU UGCCCGAA 34 293 310 CGGGCAAGCCTGTTGGAG 436 CUCCAACAGG CUUGCCCG 35 297 314 CAAGCCTGTTGGAGACTC 437 GAGUCUCCAA CAGGCUUG 36 299 316 AGCCTGTTGGAGACTCAG 438 CUGAGUCUCC AACAGGCU 37 300 317 GCCTGTTGGAGACTCAGA 439 UCUGAGUCUC CAACAGGC 38 303 320 TGTTGGAGACTCAGATGG 440 CCAUCUGAGU CUCCAACA 39 304 321 GTTGGAGACTCAGATGGA 441 UCCAUCUGAG UCUCCAAC 40 309 326 AGACTCAGATGGAGGAGG 442 CCUCCUCCAU CUGAGUCU 41 310 327 GACTCAGATGGAGGAGGA 443 UCCUCCUCCA UCUGAGUC 42 311 328 ACTCAGATGGAGGAGGAT 444 AUCCUCCUCC AUCUGAGU 43 312 329 CTCAGATGGAGGAGGATA 445 UAUCCUCCUC CAUCUGAG 44 313 330 TCAGATGGAGGAGGATAT 446 AUAUCCUCCU CCAUCUGA 45 314 331 CAGATGGAGGAGGATATT 447 AAUAUCCUCC UCCAUCUG 46 315 332 AGATGGAGGAGGATATTC 448 GAAUAUCCUC CUCCAUCU 47 316 333 GATGGAGGAGGATATTCT 449 AGAAUAUCCU CCUCCAUC 48 317 334 ATGGAGGAGGATATTCTG 450 CAGAAUAUCC UCCUCCAU 49 319 336 GGAGGAGGATATTCTGCA 451 UGCAGAAUAU CCUCCUCC 50 321 338 AGGAGGATATTCTGCAGC 452 GCUGCAGAAU AUCCUCCU 51 372 389 AGGTGGCCCAGGCACAGA 453 UCUGUGCCUG GGCCACCU 52 379 396 CCAGGCACAGAAGGTGCT 454 AGCACCUUCU GUGCCUGG 53 411 428 AGCGGCTAGAAGTCCAGC 455 GCUGGACUUC UAGCCGCU 54 412 429 GCGGCTAGAAGTCCAGCT 456 AGCUGGACUU CUAGCCGC 55 413 430 CGGCTAGAAGTCCAGCTG 457 CAGCUGGACU UCUAGCCG 56 414 431 GGCTAGAAGTCCAGCTGA 458 UCAGCUGGAC UUCUAGCC 57 415 432 GCTAGAAGTCCAGCTGAG 459 CUCAGCUGGA CUUCUAGC 58 420 437 AAGTCCAGCTGAGGAGCG 460 CGCUCCUCAG CUGGACUU 59 421 438 AGTCCAGCTGAGGAGCGC 461 GCGCUCCUCA GCUGGACU 60 438 455 CCTGGCTGGGCCCTGCCT 462 AGGCAGGGCC CAGCCAGG 61 459 476 GAGAATTTGAGGTCTTAA 463 UUAAGACCUC AAAUUCUC 62 460 477 AGAATTTGAGGTCTTAAA 464 UUUAAGACCU CAAAUUCU 63 462 479 AATTTGAGGTCTTAAAGG 465 CCUUUAAGAC CUCAAAUU 64 463 480 ATTTGAGGTCTTAAAGGC 466 GCCUUUAAGA CCUCAAAU 65 464 481 TTTGAGGTCTTAAAGGCT 467 AGCCUUUAAG ACCUCAAA 66 465 482 TTGAGGTCTTAAAGGCTC 468 GAGCCUUUAA GACCUCAA 67 466 483 TGAGGTCTTAAAGGCTCA 469 UGAGCCUUUA AGACCUCA 68 467 484 GAGGTCTTAAAGGCTCAC 470 GUGAGCCUUU AAGACCUC 69 469 486 GGTCTTAAAGGCTCACGC 471 GCGUGAGCCU UUAAGACC 70 471 488 TCTTAAAGGCTCACGCTG 472 CAGCGUGAGC CUUUAAGA 71 472 489 CTTAAAGGCTCACGCTGA 473 UCAGCGUGAG CCUUUAAG 72 473 490 TTAAAGGCTCACGCTGAC 474 GUCAGCGUGA GCCUUUAA 73 474 491 TAAAGGCTCACGCTGACA 475 UGUCAGCGUG AGCCUUUA 74 475 492 AAAGGCTCACGCTGACAA 476 UUGUCAGCGU GAGCCUUU 75 476 493 AAGGCTCACGCTGACAAG 477 CUUGUCAGCG UGAGCCUU 76 477 494 AGGCTCACGCTGACAAGC 478 GCUUGUCAGC GUGAGCCU 77 479 496 GCTCACGCTGACAAGCAG 479 CUGCUUGUCA GCGUGAGC 78 480 497 CTCACGCTGACAAGCAGA 480 UCUGCUUGUC AGCGUGAG 79 481 498 TCACGCTGACAAGCAGAG 481 CUCUGCUUGU CAGCGUGA 80 482 499 CACGCTGACAAGCAGAGC 482 GCUCUGCUUG UCAGCGUG 81 483 500 ACGCTGACAAGCAGAGCC 483 GGCUCUGCUU GUCAGCGU 82 485 502 GCTGACAAGCAGAGCCAC 484 GUGGCUCUGC UUGUCAGC 83 513 530 CCCTCACAGGCCACGTGC 485 GCACGUGGCC UGUGAGGG 84 514 531 CCTCACAGGCCACGTGCA 486 UGCACGUGGC CUGUGAGG 85 520 537 AGGCCACGTGCAGCGGCA 487 UGCCGCUGCA CGUGGCCU 86 521 538 GGCCACGTGCAGCGGCAG 488 CUGCCGCUGC ACGUGGCC 87 524 541 CACGTGCAGCGGCAGAGG 489 CCUCUGCCGC UGCACGUG 88 530 547 CAGCGGCAGAGGCGGGAG 490 CUCCCGCCUC UGCCGCUG 89 534 551 GGCAGAGGCGGGAGATGG 491 CCAUCUCCCG CCUCUGCC 90 540 557 GGCGGGAGATGGTGGCAC 492 GUGCCACCAU CUCCCGCC 91 543 560 GGGAGATGGTGGCACAGC 493 GCUGUGCCAC CAUCUCCC 92 546 563 AGATGGTGGCACAGCAGC 494 GCUGCUGUGC CACCAUCU 93 553 570 GGCACAGCAGCATCGGCT 495 AGCCGAUGCU GCUGUGCC 94 555 572 CACAGCAGCATCGGCTGC 496 GCAGCCGAUG CUGCUGUG 95 557 574 CAGCAGCATCGGCTGCGA 497 UCGCAGCCGA UGCUGCUG 96 558 575 AGCAGCATCGGCTGCGAC 498 GUCGCAGCCG AUGCUGCU 97 559 576 GCAGCATCGGCTGCGACA 499 UGUCGCAGCC GAUGCUGC 98 560 577 CAGCATCGGCTGCGACAG 500 CUGUCGCAGC CGAUGCUG 99 561 578 AGCATCGGCTGCGACAGA 501 UCUGUCGCAG CCGAUGCU 100 562 579 GCATCGGCTGCGACAGAT 502 AUCUGUCGCA GCCGAUGC 101 563 580 CATCGGCTGCGACAGATC 503 GAUCUGUCGC AGCCGAUG 102 564 581 ATCGGCTGCGACAGATCC 504 GGAUCUGUCG CAGCCGAU 103 565 582 TCGGCTGCGACAGATCCA 505 UGGAUCUGUC GCAGCCGA 104 567 584 GGCTGCGACAGATCCAGG 506 CCUGGAUCUG UCGCAGCC 105 569 586 CTGCGACAGATCCAGGAG 507 CUCCUGGAUC UGUCGCAG 106 570 587 TGCGACAGATCCAGGAGA 508 UCUCCUGGAU CUGUCGCA 107 571 588 GCGACAGATCCAGGAGAG 509 CUCUCCUGGA UCUGUCGC 108 607 624 CCCAGCCTGAATCTGCCT 510 AGGCAGAUUC AGGCUGGG 109 610 627 AGCCTGAATCTGCCTGGA 511 UCCAGGCAGA UUCAGGCU 110 611 628 GCCTGAATCTGCCTGGAT 512 AUCCAGGCAG AUUCAGGC 111 619 636 CTGCCTGGATGGAACTGA 513 UCAGUUCCAU CCAGGCAG 112 644 661 TCATGOTGCAAGGAACAC 514 GUGUUCCUUG CAGCAUGA 113 652 669 CAAGGAACACTTCCACGC 515 GCGUGGAAGU GUUCCUUG 114 655 672 GGAACACTTCCACGCCCC 516 GGGGCGUGGA AGUGUUCC 115 698 715 TGCCTGTTCACTGGGATC 517 GAUCCCAGUG AACAGGCA 116 699 716 GCCTGTTCACTGGGATCA 518 UGAUCCCAGU GAACAGGC 117 701 718 CTGTTCACTGGGATCAGC 519 GCUGAUCCCA GUGAACAG 118 702 719 TGTTCACTGGGATCAGCC 520 GGCUGAUCCC AGUGAACA 119 709 726 TGGGATCAGCCAGGGCGC 521 GCGCCCUGGC UGAUCCCA 120 710 727 GGGATCAGCCAGGGCGCC 522 GGCGCCCUGG CUGAUCCC 121 847 864 CATTAAAGCAGAGTCGTG 523 CACGACUCUG CUUUAAUG 122 848 865 ATTAAAGCAGAGTCGTGG 524 CCACGACUCU GCUUUAAU 123 850 867 TAAAGCAGAGTCGTGGCA 525 UGCCACGACU CUGCUUUA
[0160] siRNAs are designed that are complementary to the 18mer regions of the ANGPTL8 transcript NM (SEQ ID NO: 1) as shown above in Table 1. The sense strand and the antisense RNA oligonucleotides strands are between 18 and 23 nucleotides in length, with optional overhangs of 1 to 5 ribonucleotides, with 1-10 fluoro additions at the 2′ position of ribose, and the remaining residues are methylated at the 2′position of ribose (creating an 2′ methoxy i.e. a 2′ O-methyl modification). Some antisense strands are phosphorylated at the 5′ position. Each siRNA is conjugated to a delivery moiety comprising 3 GalNAc group; select delivery moieties comprise Formula I while others comprise a control moiety. One or more phosphodiester bonds are present at the 5′ and 3′ ends.
[0161] Knockdown of ANGPTL8 expression by these siRNAs is assayed using the following procedure: mouse primary hepatocytes (MPH) are freshly isolated from an AAV-ANGPTL8 humanized mouse, added to Corning plates at 15k per well, and siRNA are added directly to the well. For single measurements, 1 uM (1000 nM) is used; to generate concentration/dose response curves final concentrations of 1000, 333, 111, 37, 12, 4, 1.37, 0.46, 0.15, 0.05, and 0.017 nM of GalNAc-conjugated siRNA concentration is used.
[0162] Treated cells are lysed and RNA is isolated using the Quick-RNA 96 Kit (Zymo Research) directly into the 96 well plate. The eluted RNA is used immediately or stored frozen. cDNA is synthesized using Fast Advanced RT Master Mix (Invitrogen) and using the following steps in a thermocycler: 37 C for 30 minutes, 95 C for 5 minutes, and 4 C hold. Polymerase Chain Reaction (PCR) is performed via TaqMan RT PCR (Life Technologies) using the following cycles temperatures and times: 50 C for 2 minutes, 95 C for 10 minutes, 40 cycles of 95 C for 15 seconds and 60 C for 1 minute.
[0163] The human ANGPTL8 levels are normalized to mouse Rp1p0 (Life Technologies) and represent the relative knockdown of human ANGPTL8 mRNA expression as compared to vehicle-treated control cells. IC50 values are calculated using a 4-parameter fit model using XLFit.
[0164] The ANGPTL8 target regions of siRNAs that exhibited a greater than 50% knockdown are shown below in Table 2.
TABLE-US-00002 TABLE 2 SEQ SEQ ID NO Start End 18 mer DNA ID NO Antisense RNA (DNA Position Position Sequence (RNA sequence SEQ) on DNA on DNA (5′-3′) SEQ) (5′-3′) 3 120 137 AGCTGACCCTGCTCTTCC 405 GGAAGAGCAGGGUCAGCU 6 185 202 ACGGAGGGACGGCTGACA 408 UGUCAGCCGUCCCUCCGU 10 195 212 GGCTGACAAAGGCCAGGA 412 UCCUGGCCUUUGUCAGCC 11 197 214 CTGACAAAGGCCAGGAAC 413 GUUCCUGGCCUUUGUCAG 12 210 227 GGAACAGCCTGGGTCTCT 414 AGAGACCCAGGCUGUUCC 13 211 228 GAACAGCCTGGGTCTCTA 415 UAGAGACCCAGGCUGUUC 16 218 235 CTGGGTCTCTATGGCCGC 418 GCGGCCAUAGAGACCCAG 18 220 237 GGGTCTCTATGGCCGCAC 420 GUGCGGCCAUAGAGACCC 23 273 290 GGGATGCAGCCCAGGAAC 425 GUUCCUGGGCUGCAUCCC 24 274 291 GGATGCAGCCCAGGAACT 426 AGUUCCUGGGCUGCAUCC 26 282 299 CCCAGGAACTTCGGGCAA 428 UUGCCCGAAGUUCCUGGG 27 283 300 CCAGGAACTTCGGGCAAG 429 CUUGCCCGAAGUUCCUGG 30 286 303 GGAACTTCGGGCAAGCCT 432 AGGCUUGCCCGAAGUUCC 31 287 304 GAACTTCGGGCAAGCCTG 433 CAGGCUUGCCCGAAGUUC 32 290 307 CTTCGGGCAAGCCTGTTG 434 CAACAGGCUUGCCCGAAG 33 291 308 TTCGGGCAAGCCTGTTGG 435 CCAACAGGCUUGCCCGAA 34 293 310 CGGGCAAGCCTGTTGGAG 436 CUCCAACAGGCUUGCCCG 35 297 314 CAAGCCTGTTGGAGACTC 437 GAGUCUCCAACAGGCUUG 36 299 316 AGCCTGTTGGAGACTCAG 438 CUGAGUCUCCAACAGGCU 37 300 317 GCCTGTTGGAGACTCAGA 439 UCUGAGUCUCCAACAGGC 38 303 320 TGTTGGAGACTCAGATGG 440 CCAUCUGAGUCUCCAACA 39 304 321 GTTGGAGACTCAGATGGA 441 UCCAUCUGAGUCUCCAAC 40 309 326 AGACTCAGATGGAGGAGG 442 CCUCCUCCAUCUGAGUCU 41 310 327 GACTCAGATGGAGGAGGA 443 UCCUCCUCCAUCUGAGUC 42 311 328 ACTCAGATGGAGGAGGAT 444 AUCCUCCUCCAUCUGAGU 43 312 329 CTCAGATGGAGGAGGATA 445 UAUCCUCCUCCAUCUGAG 44 313 330 TCAGATGGAGGAGGATAT 446 AUAUCCUCCUCCAUCUGA 46 315 332 AGATGGAGGAGGATATTC 448 GAAUAUCCUCCUCCAUCU 47 316 333 GATGGAGGAGGATATTCT 449 AGAAUAUCCUCCUCCAUC 49 319 336 GGAGGAGGATATTCTGCA 451 UGCAGAAUAUCCUCCUCC 50 321 338 AGGAGGATATTCTGCAGC 452 GCUGCAGAAUAUCCUCCU 52 379 396 CCAGGCACAGAAGGTGCT 454 AGCACCUUCUGUGCCUGG 55 413 430 CGGCTAGAAGTCCAGCTG 457 CAGCUGGACUUCUAGCCG 56 414 431 GGCTAGAAGTCCAGCTGA 458 UCAGCUGGACUUCUAGCC 57 415 432 GCTAGAAGTCCAGCTGAG 459 CUCAGCUGGACUUCUAGC 61 459 476 GAGAATTTGAGGTCTTAA 463 UUAAGACCUCAAAUUCUC 62 460 477 AGAATTTGAGGTCTTAAA 464 UUUAAGACCUCAAAUUCU 63 462 479 AATTTGAGGTCTTAAAGG 465 CCUUUAAGACCUCAAAUU 64 463 480 ATTTGAGGTCTTAAAGGC 466 GCCUUUAAGACCUCAAAU 65 464 481 TTTGAGGTCTTAAAGGCT 467 AGCCUUUAAGACCUCAAA 66 465 482 TTGAGGTCTTAAAGGCTC 468 GAGCCUUUAAGACCUCAA 67 466 483 TGAGGTCTTAAAGGCTCA 469 UGAGCCUUUAAGACCUCA 69 469 486 GGTCTTAAAGGCTCACGC 471 GCGUGAGCCUUUAAGACC 70 471 488 TCTTAAAGGCTCACGCTG 472 CAGCGUGAGCCUUUAAGA 71 472 489 CTTAAAGGCTCACGCTGA 473 UCAGCGUGAGCCUUUAAG 72 473 490 TTAAAGGCTCACGCTGAC 474 GUCAGCGUGAGCCUUUAA 73 474 491 TAAAGGCTCACGCTGACA 475 UGUCAGCGUGAGCCUUUA 74 475 492 AAAGGCTCACGCTGACAA 476 UUGUCAGCGUGAGCCUUU 77 479 496 GCTCACGCTGACAAGCAG 479 CUGCUUGUCAGCGUGAGC 88 530 547 CAGCGGCAGAGGCGGGAG 490 CUCCCGCCUCUGCCGCUG 89 534 551 GGCAGAGGCGGGAGATGG 491 CCAUCUCCCGCCUCUGCC 90 540 557 GGCGGGAGATGGTGGCAC 492 GUGCCACCAUCUCCCGCC 91 543 560 GGGAGATGGTGGCACAGC 493 GCUGUGCCACCAUCUCCC 93 553 570 GGCACAGCAGCATCGGCT 495 AGCCGAUGCUGCUGUGCC 97 559 576 GCAGCATCGGCTGCGACA 499 UGUCGCAGCCGAUGCUGC 98 560 577 CAGCATCGGCTGGGACAG 500 CUGUCGCAGCCGAUGCUG 99 561 578 AGCATCGGCTGCGACAGA 501 UCUGUCGCAGCCGAUGCU 100 562 579 GCATCGGCTGCGACAGAT 502 AUCUGUCGCAGCCGAUGC 101 563 580 CATCGGCTGCGACAGATC 503 GAUCUGUCGCAGCCGAUG 102 564 581 ATCGGCTGCGACAGATCC 504 GGAUCUGUCGCAGCCGAU 103 565 582 TCGGCTGCGACAGATCCA 505 UGGAUCUGUCGCAGCCGA 104 567 584 GGCTGCGACAGATCCAGG 506 CCUGGAUCUGUCGCAGCC 105 569 586 CTGCGACAGATCCAGGAG 507 CUCCUGGAUCUGUCGCAG 106 570 587 TGCGACAGATCCAGGAGA 508 UCUCCUGGAUCUGUCGCA 107 571 588 GCGACAGATCCAGGAGAG 509 CUCUCCUGGAUCUGUCGC
EXAMPLE 2
[0165] An ANGPTL8 siRNA conjugated to a control delivery moiety (cntrl-GalNAc) comprising 3 GalNAc groups is compared to the same siRNA conjugated to a delivery moiety of Formula I, and compared to an siRNA lacking a 5′ phosphate on the antisense strand and assayed as described in this Example 2. The sense and antisense strands of the three siRNAs are shown below in Table 3; the three siRNAs each have one of the following pairs of sense and antisense strands, respectively: SEQ ID NOs: 381 and 397; or 382 and 398; or 366 and 372. Modifications are noted immediately prior to the corresponding modified nucleotide. P stands for phosphorylation, m for methylation of the OH group creating a 2′ methoxy modification on the ribose; f for a 2′ fluoro modification of the ribose, * for a phosphorothioate modification of the phosphodiester bond of the backbone).
TABLE-US-00003 TABLE 3 Sense SEQ or ID Anti- Sense or Anti-Sense with Delivery NO Sense modifications (5′ to 3′) Moiety 381 Sense mC*mG*mAmGmAmAfUmUfUfGfA Control mGmGmUmCmUmUmAmA*mA*mG GalNAc 397 Anti- PmC*fU*mUmUmAfAmGmAmCmCm sense UmCmAfAmAfUmUmCmUmCmG* mG*mU 382 Sense mC*mG*mAmGmAmAfUmUfUfGfA Formula mGmGmUmCmUmUmAmA*mA*mG I 398 Anti- PmC*fU*mUmUmAfAmGmAmCmC sense mUmCmAfAmAfUmUmCmUmCmG* mG*mU 366 Sense mC*mG*mAmGmAmAfUmUfUfGf Formula AmGmGmUmCmUmUmAmA*mA*mG I 372 Anti- mC*fU*mUmUmAfAmGmAmCmC sense mUmCmAfAmAfUmUmCmUmCmG* mG*mU
[0166] Three assays are performed to analyze ANGPTL3/8 levels, triglyceride levels, and knockdown of ANGPTL8 expression as measured by mRNA levels (% KD), in order to compare the above siRNAs.
[0167] The conjugated siRNAs are tested in male transgenic mice for human cholesterol ester transfer protein (CETP) and apolipoprotein A1 (Taconic farms). Mice are dosed by retro-orbital injection with two adeno-associated virus (AAV) vectors. The first vector contains a plasmid with an albumin promoter and the coding sequence for human ANGPTL8 (NM_018687.7) SEQ ID NO:1. The second vector contains a mouse codon optimized sequence of human ANGPTL3 (NP_055310.1) SEQ ID NO:2. Animals are weighed and blood is collected from mice 3 to 5 weeks post AAV administration. This is considered the pre-study bleed. Serum is prepared from blood and triglycerides are measured utilizing a COBAS clinical chemistry analyzer (Roche) and ANGPTL3/8 protein levels are measured by ELISA (Meso Scale Diagnostics). Mice are assigned to groups with similar body weight, serum triglyceride and ANGPTL3/8 levels (n=6). Blood is collected on study day 0 and this collection is considered the baseline. Either PBS or test siRNAs, at doses of 3 and 10 mg/kg are administered subcutaneously to mice on study day 0. Blood is collected from mice 1 and 2 weeks post siRNA administration under isoflurane anesthesia. Serum is prepared from blood and triglycerides are measured utilizing a COBAS clinical chemistry analyzer (Roche). Serum ANGPTL3/8 levels are measured by an ELISA (Meso Scale Diagnostics). Triglyceride as a percent change from baseline at 1 weeks is calculated as ((triglyceride at one weeks minus triglyceride at baseline)/(triglyceride at baseline))*100. Triglyceride as a percent change from baseline at 2 weeks is calculated similarly. ANGPTL3/8 as a percent change from baseline at 1 week is calculated as ((ANGPTL3/8 at one week minus ANGPTL3/8 at baseline)/(ANGPTL3/8 at baseline))*100. ANGPTL3/8 as a percent change from baseline at 2 weeks is calculated similarly. Serum triglyceride and ANGPTL3/8 data is analyzed for a statistically significant difference from the PBS group at corresponding timepoint using ANOVA and Dunnett's method where p<0.05 was considered statistically significant (SAS Institute).
[0168] For measuring in vitro knockdown, mice are euthanized under isoflurane anesthesia two weeks post subcutaneous injection. Liver is collected from the mice and frozen in liquid nitrogen. Livers are homogenized in TriZol (Invitrogen) using Lysing Matrix D bead tubes on a FastPrep-24 (MP Bio), and RNA is purified and resuspended in nuclease free water. The RNA is quantitated on the NanoDrop (ThermoFisher). Equal amounts of RNA are reverse transcribed to cDNA using High-Capacity cDNA Reverse Transcription kit (Life Technologies) on a ProFlex Thermocycler (Thermo Fisher). Thermocycler settings are 25° C. for 10 min, 37° C. for 2 hrs, then 85° C. for 5 min. Template cDNA is combined with Taqman Universal Master Mix and Assays on Demand primer/probesets and RT-PCR is performed on QuantStudio 7 Flex Real-Time PCR system (Applied Biosystems) with the following parameters: 50° C. for 2 min, 95° C. for 10 min then 40 cycles of 95° C. for 15 sec and 60° C. for 1 min. Fold changes (FC) are calculated as follows: the CT value of mouse Rp1p0 is subtracted from CT value of human ANGPTL8 to obtain the delta CT value. The delta CT value is calculated by subtracting the average delta CT value of the untreated sample (PBS control) for each gene from the delta CT value of each test sample. Fold change is calculated by taking the log base 2 of the negative delta CT value. Percent knock down (% KD) is calculated by subtracting FC from one and multiplying by 100. Data is shown in Table 4. The two siRNAs comprising the delivery moiety of Formula I perform better than the control delivery moiety, and demonstrate lower levels of ANGPTL8, lower triglyceride levels, and a higher percent knockdown of ANGPTL8 mRNA.
TABLE-US-00004 TABLE 4 Anti- Sense Sense % KD SEQ SEQ Dose 1 week 2 week 1 week 2 week ANGPTL8 ID NO ID NO (mg/kg) ANGPTL3/8 ANGPTL3/8 TRIG TRIG mRNA 381 397 3 −57* −71* −44* −49* 84* 10 −87* −93* −73* −77* 97* 382 398 3 −70* −82* −56* −61* 97* 10 −93* −96* −74* −77* 96* 366 372 3 −81* −87* −65* −61* 96* 10 −89* −94* −71* −73* 98* *indicates p < 0.05 ANOVA with Dunnetts
EXAMPLE 3
[0169] Exemplary siRNAs that are complementary to the above 18mer regions of the ANGPTL8 transcript NM (SEQ ID NO:1) (Table 1), are designed and shown in the sequence listing below by the underlying nucleotide sequence, where each row represents an siRNA having the given sense and antisense strand. As shown, the underlying sense and antisense RNA oligonucleotides strands are between 18 and 23 nucleotides in length and with optional overhangs of 1 to 5 ribonucleotides. The underlying nucleotide sequence shown is modified, with 1-10 fluoro additions at the 2′ position of ribose, and the remaining residues are methylated at the 2′position of ribose (creating a 2′ methoxy modification). Some antisense strands are phosphorylated at the 5′ position. Each siRNA is conjugated to a delivery moiety comprising 3 GalNAc groups; select delivery moieties comprise Formula I while others comprise a control moiety. One or more phosphodiester bonds are present at the 5′ and 3′ ends. A control GalNAc is attached at the 3′ end of the sense strand. Subsets of these siRNAs are tested in an in vivo knockdown assay.
[0170] For the in vivo knockdown assay, select siRNAs are tested in male C57b1/6 mice (Taconic farms). Mice are dosed by retro-orbital injection with an adeno-associated virus (AAV) vector containing a plasmid with an albumin promoter and the coding sequence for human ANGPTL8 (SEQ ID NO:1 (NCBI Reference Sequence NM_018687.7) (Vector BioLabs). Mice are weighed two weeks post AAV administration. Mice are assigned to groups with similar body weight (n=5). Either PBS or test siRNA, at a dose of 10 mg/kg, is administered subcutaneously to mice. Seven days post subcutaneous injection mice are euthanized under isoflurane anesthesia. Liver is collected from the mice and frozen in liquid nitrogen. RNA is isolated and purified from the collected liver and used for cDNA synthesis and quantified by RT PCR.
[0171] Fold changes (FC) are calculated as follows: the CT value of mouse Rp1p0 is subtracted from CT value of human ANGPTL8 to obtain the delta CT value. Relative amount is calculated by taking the log base 2 of the negative delta delta CT value. Fold change is calculated by dividing the relative amount of each sample by the average of the control group. Percent knock down (% KD) is calculated by subtracting FC from one and multiplying by 100. Data is shown in Table 5.
TABLE-US-00005 TABLE 5 siRNA Sense Anti-Sense (Row Number SEQ ID SEQ ID from Table 11) NO NO % KD 1A 124 231 64.9 3C 126 233 63.6 5E 128 235 80.6 7G 130 237 59.2 10J 133 240 71.1 40NN 151 270 72.7 43QQ 154 273 55.7 44RR 155 274 51.1 49WW 160 279 67.6 52ZZ 163 282 75.5 62D3 167 286 73.7 64F3 169 288 72.5 91P# 177 292 50.2 98V3 183 298 75.2 116f4 193 308 53.2 118h4 195 310 71.8 150H5 200 336 57.1 161S5 217 347 81.4 162TS 218 348 69.2 165W5 221 351 72.2
[0172] The same procedures described above for the 10 mg/kg dose are performed at a dose of 3 mg/kg for measuring the in vivo knockdown of the following siRNAs in Table 6. (each siRNA has the sense and antisense strands in vertical order, where the first tested siRNA comprises the first two rows of the table, SEQ ID NOs 373 and 389, the next siRNA comprises the 3.sup.rd and 4.sup.th rows of the table, SEQ ID NOs 374 and 390, and so forth; a control GalNAc is attached at the 3′ end of the sense strand for each siRNA.) Abbreviations for modifications are the same as shown above in Example 3. Results for select RNAs are shown below in Table 7.
TABLE-US-00006 TABLE 6 Sense SEQ or ID Anti- Sense or Anti-Sense with NO Sense modifications (5′ to 3′) 373 Sense mU*mC*mAmGmAmUmGmGfAfGfGmAmGmGmAmUmAmU mUmCmU 389 Anti- PmA*fG*mAmAmUfAmUmCmCmUmCmCmUfCmCfAmU Sense mCmUmGmA*mG*mU 374 Sense mG*mC*mAmGmAmUfGmGfAfGfGmAmGmGmAmUmAmU mU*mC*mA 390 Anti- PmU*fG*mAmAmUfAmUmCmCmUmCmCmUfCmCfAmU Sense mCmUmGmC*mG*mU 375 Sense mU*mC*mAmGmAmUfGmGfAfGfGmAmGmGmAmUmAmU mUmCmU 391 Anti- PmA*fG*mAmAmUfAmUmCmCmUmCmCmUfCmCfAmU Sense mCmUmGmA*mG*mU 376 Sense mU*mC*mAmGmAmUfGmGfAfGfGmAmGmGmAmUmAmU mU*mC*mC 392 Anti- PmG*fG*mAmAmUfAmUmCmCmUmCmCmUfCmCfAmU Sense mCmUmGmA*mG*mU 377 Sense mU*mC*mAmGmAmUfGmGfAfGfGmAmGmGmAmUmAmU mUmCmU 393 Anti- PmA*fG*mAmAmUmAmUmCmCmUmCmCmUfCmCmAmU Sense mCmUmGmA*mG*mU 378 Sense mC*mA*mGmAmUmGfGmAfGfGfAmGmGmAmUmAmUmU mC*mU*mA 394 Anti- PmU*fA*mGmAmAfUmAmUmCmCmUmCmCfUmCfCmA Sense mUmCmUmG*mA*mG 379 Sense mA*mU*mGmGmAmGfGmAfGfGfAmUmAmUmUmCmUmG mC*mA*mA 395 Anti- PmU*fU*mGmCmAfGmAmAmUmAmUmCmCfUmCfCmU Sense mCmCmAmU*mC*mU 380 Sense mC*mC*mGmAmGmAfAmUfUfUfGmAmGmGmUmCmUmU mA*mA*mA 396 Anti- PmU*fU*mUmAmAfGmAmCmCmUmCmAmAfAmUfUmC Sense mUmCmGmG*mU*mA 381 Sense mC*mG*mAmGmAmAfUmUfUfGfAmGmGmUmCmUmUmA mA*mA*mG 397 Anti- PmC*fU*mUmUmAfAmGmAmCmCmUmCmAfAmAfUmU Sense mCmUmCmG*mG*mU 382 Sense mC*mG*mAmGmAmAfUmUfUfGfAmGmGmUmCmUmUmA mA*mA*mG 398 Anti- PmC*fU*mUmUmAfAmGmAmCmCmUmCmAfAmAfUmU Sense mCmUmCmG*mG*mU 383 Sense mG*mG*mAmGmAmAfUmUfUfGfAmGmGmUmCmUmUmA mA*mA*mA 399 Anti- PmU*fU*mUmUmAfAmGmAmCmCmUmCmAfAmAfUmU Sense mCmUmCmC*mG*mU 384 Sense mC*mG*mAmGmAmAfUmUfUfGfAmGmGmUmCmUmUmA mA*mA*mA 400 Anti- PmU*fU*mUmUmAfAmGmAmCmCmUmCmAfAmAfUmU Sense mCmUmCmG*mG*mU 385 Sense mC*mG*mAmGmAmAfUmUfUfGfAmGmGmUmCmUmUmA mAmAmG 401 Anti- PmC*fU*mUmUmAfAmGmAmCmCmUmCmAfAmAfUmU Sense mCmUmCmG*mG*mU 386 Sense mC*mG*mAmGmAmAmUmUfUfGfAmGmGmUmCmUmUmA mAmAmG 402 Anti- PmC*fU*mUmUmAfAmGmAmCmCmUmCmAfAmAfUmU Sense mCmUmCmG*mG*mU 387 Sense mC*mG*mAmGmAmAfUmUfUfGfAmGmGmUmCmUmUmA mAmAmG 403 Anti- PmC*fU*mUmUmAmAmGmAmCmCmUmCmAfAmAmUmU Sense mCmUmCmG*mG*mU 388 Sense mC*mG*mAmGmAmAmUmUfUfGfAmGmGmUmCmUmUmA mAmAmG 404 Anti- PmC*fU*mUmUmAmAmGmAmCmCmUmCmAfAmAmUmU Sense mCmUmCmG*mG*mU
TABLE-US-00007 TABLE 7 Sense Anti-Sense % KD SEQ ID NO SEQ ID NO ANGPTL8 mRNA 381 397 49.8 380 396 69.2 376 392 44.3 388 404 38.9 374 390 44.7 387 403 37.9 377 393 39.1 383 399 44.9 384 400 57.8 385 401 53.8 379 395 65.1 373 389 51.8 375 391 52.7 386 402 58.9 378 394 56.8
EXAMPLE 5
[0173] GalNAc-siRNAs are tested in male transgenic mice with human cholesterol ester transfer protein (CETP) and apolipoprotein A1 (Taconic fars). The siRNAs are divided and tested in 3 studies (n=2, n=2, and n=2). Mice are dosed by retro-orbital injection with two adeno-associated virus (AAV) vectors. One vector contains a plasmid with an albumin promoter and the coding sequence for human ANGPTL8 (SEQ ID NO:1). The second vector contains a mouse codon optimized sequence of human ANGPTL3 (SEQ ID NO:2)(NP_055310.1). A Baseline blood sample is collected from mice 4 to 6.5 weeks post AAV administration. Serum is prepared from blood and triglycerides are measured utilizing a COBAS clinical chemistry analyzer (Roche) and ANGPTL3/8 is measured by ELISA (Meso Scale Diagnostics). Mice are assigned to groups with similar serum triglyceride and ANGPTL3/8 levels. siRNAs are designed as shown in Table 8; each siRNA is conjugated to a delivery moiety of Formula I. Either PBS or the siRNAs, at doses of 0.3, 1, 3 and 10 mg/kg are administered subcutaneously to mice. Blood is collected from mice 3, 6, and 9 weeks post siRNA administration under isoflurane anesthesia. Serum is prepared from blood and triglycerides are measured utilizing a COBAS clinical chemistry analyzer (Roche).
[0174] Triglyceride as a percent change from baseline at 3 weeks is calculated as ((triglyceride at three weeks minus triglyceride at baseline)/(triglyceride at baseline))*100. Triglyceride as a percent change from baseline at 6 and 9 week is calculated similarly. Triglyceride Data was analyzed for a statistically significant difference from the PBS group at corresponding timepoint using ANOVA and Dunnett's method where p<0.05 was considered statistically significant (SAS Institute) Data is shown in Table 9.
[0175] The corresponding in vitro percent knockdown at 1000 nM for each of the molecules is shown in Table 10.
TABLE-US-00008 TABLE 8 Anti- Sense Sense strand Sense Antisense SEQ sequence with SEQ strand with ID modifications ID modifications NO (5′ to 3′) NO (5′ to 3′) 361 mA*mU*mGmGmAmG 367 [Phos]mU*fU*mGmCmA fGmAfGfGfAmUmA fGmAmAmUmAmUmCmCfU mUmUmCmUmGmC* mCfCmUmCmCmAmU*mC* mA*mA mU 362 mC*mC*mGmAmGmA 368 [Phos]mU*fU*mUmAmA fAmUfUfUfGmAmG fGmAmCmCmUmCmAmAfA mGmUmCmUmUmA* mUfUmCmUmCmGmG*mU* mA*mA mA 363 mA*mU*mGmGmAmG 369 mU*fU*mGmCmAfGmAmA fGmAfGfGfAmUmA mUmAmUmCmCfUmCfCmU mUmUmCmUmGmC* mCmCmAmU*mC*mU mA*mA 364 mG*mG*mUmCmUmU 370 mU*fC*mAmGmCfGmUmG fAmAfAfGfGmCmU mAmGmCmCmUfUmUfAmA mCmAmCmGmCmU* mGmAmCmC*mU*mC mG*mA 365 mA*mU*mGmGmAmG 371 mC*fU*mGmCmAfGmAmA fGmAfGfGfAmUmA mUmAmUmCmCfUmCfCmU mUmUmCmUmGmC* mCmCmAmU*mC*mU mA*mG 366 mC*mG*mAmGmAmA 372 mC*fU*mUmUmAfAmGmA fUmUfUfGfAmGmG mCmCmUmCmAfAmAfUmU mUmCmUmUmAmA* mCmUmCmG*mG*mU mA*mG
TABLE-US-00009 TABLE 9 SEQ ID SEQ ID NO of NO of Anti- Dose 3 week 6 week 9 week 12 week 15 week siRNA Sense Sense (mg/kg) % chg % chg % chg % chg % chg i 361 367 0.3 5 −4 10 −9 −13 1 −29* −21* −20* −38* −32 3 −62* −56* −45* −50* −50* 10 −86* −85* −78* −75* −74* ii 362 368 0.3 −24* −10 −14 −33* −19 1 −44* −31* −13 −27* −25 3 −53* −48* −28* −38* −30 10 −65* −64* −54* −51* −35 iii 365 371 0.3 −27 −27 −24 −41 −35 1 −48* −39 −38 −45 −41 3 −81* −72* −72* −73* −64* 10 −87* −84* −80* −83* −79* iv 366 372 0.3 −24 −33 −27 −42 −42 1 −57* −51* −46* −56* −48 3 −65* −61* −48* −52* −43 10 −76* −73* −60* −61* −55 v 363 369 0.3 −4 −8 −4 −2 −17 1 −51* −37* −27* −8 −31 3 −73* −66* −55* −60* −50* 10 −88* −86* −86* −81* −79* vi 364 370 0.3 21 9 4 −5 −19 1 −23* −18 −16 −11 −30 3 −42* −34* −23 −18 −25 10 −72* −63* −54* −42* −50*
TABLE-US-00010 TABLE 10 Sense SEQ Antisense SEQ % KD at siRNA ID NO ID NO 1000 nM i 361 367 92.1 ii 362 368 93.7 iii 363 369 92.4 iv 364 370 77.4 v 365 371 81.0 vi 366 372 93.4
TABLE-US-00011 TABLE 11 Sense Anti- SEQ Sense ID SEQ Row Sense Sequence NO Anti-Sense Sequence ID NO 1A GGAGCUGACCCUGCUCUUCCA 124 UGGAAGAGCAGGGUCAGCUCCUC 231 2B CCACGGAGGGACGGCUGACAA 125 UUGUCAGCCGUCCCUCCGUGGUC 232 3C ACGGCUGACAAAGGCCAGGAA 126 UUCCUGGCCUUUGUCAGCCGUCC 233 4D GGCUGACAAAGGCCAGGAACA 127 UGUUCCUGGCCUUUGUCAGCCGU 234 5E CAGGAACAGCCUGGGUCUCUA 128 UAGAGACCCAGGCUGUUCCUGGC 235 6F CAGGAACAGCCUGGGUCUCUC 129 GAGAGACCCAGGCUGUUCCUGGC 236 7G AGGAACAGCCUGGGUCUCUAU 130 AUAGAGACCCAGGCUGUUCCUGG 237 8H AGGAACAGCCUGGGUCUCUAA 131 UUAGAGACCCAGGCUGUUCCUGG 238 9I GCCUGGGUCUCUAUGGCCGCA 132 UGCGGCCAUAGAGACCCAGGCUG 239 10J CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGGC 240 11K CUUGGUCUCUAUGGCCGCACA 134 UGUGCGGCCAUAGAGACCAAGGC 241 12L CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGUG 242 13M CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGGC 243 14N CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGUU 244 15O CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGAG 245 16P CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGAU 246 17Q CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGGC 247 18R CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGAA 248 19S CUAGGUCUCUAUGGCCGCACA 135 UGUGCGGCCAUAGAGACCCAGGC 249 20T CUGGGUCUCUAUGGCCGCACA 133 CGCGCGGCCACAGAGACCCAGCG 250 21U CAAGGUCUCUAUGGCCGCACA 136 CGCGCGGCCACAGAGACCCCGGC 251 22V CUGGGUCUCUAUGGCCGCACA 133 CGCGCGGCCACAGAGACCCAGCA 252 23W CUGGGUCUCUAUGGCCGCACA 133 CGCGCGGCCACAGAGACCCAGAC 253 24X CUGGGUCUCUAUGGCCGCACA 133 CGCGCGGCCACAGAGACCCAGCC 254 25Y CCCGGUCUCUAUGGCCGCACA 137 CGCGCGGCCACAGAGACCGGGGC 255 26Z CUGGGUCUCUAUGGCCGCACA 133 CGCGCGGCCACAGAGACCCAGCA 256 27AA CAUGGUCUCUAUGGCCGCACA 138 CGCGCGGCCACAGAGACCACGGC 257 28BB CAGGGUCUCUAUGGCCGCACA 139 CGCGCGGCCACAGAGACCCCGGC 258 29CC CGAGGUCUCUAUGGCCGCACA 140 CGCGCGGCCACAGAGACCCCGGC 259 30DD CGGGGUCUCUAUGGCCGCACA 141 CGCGCGGCCACAGAGACCCCGGC 260 31EE CGAGGUCUCUAUGGCCGCACA 142 CGCGCGGCCACAGAGACCCCGGC 261 32FF CCGGGAUGCAGCCCAGGAACU 143 AGCCCCCGGGCCGCACCCCGGCC 262 33GG CGGGAUGCAGCCCAGGAACUU 144 AAGCCCCCGGGCCGCACCCCGGC 263 34HH AGCCCAGGAACUUCGGGCAAA 145 CCCGCCCGAAGCCCCCGGGCCGC 264 35II GCCCAGGAACUUCGGGCAAGA 146 UCUUGCCCGAAGUUCCUGGGCUG 265 36JJ CAGGAACUUCGGGCAAGCCUA 147 CAGGCCCGCCCGAAGCCCCCGGG 266 37KK AGGAACUUCGGGCAAGCCUGA 148 UCAGGCUUGCCCGAAGUUCCUGG 267 38LL AACUUCGGGCAAGCCUGUUGA 149 CCAACAGGCCCGCCCGAAGCCCC 268 39MM ACUUCGGGCAAGCCUGUUGGA 150 UCCAACAGGCUUGCCCGAAGUUC 269 40NN UUCGGGCAAGCCUGUUGGAGA 151 UCUCCAACAGGCUUGCCCGAAGU 270 41OO GGCAAGCCUGUUGGAGACUCA 152 UGAGUCUCCAACAGGCUUGCCCG 271 42PP CAAGCCUGUUGGAGACUCAGA 153 UCUGAGUCUCCAACAGGCUUGCC 272 43QQ AAGCCUGUUGGAGACUCAGAU 154 ACCCGAGCCCCCAACAGGCCCGC 273 44RR CCUGUUGGAGACUCAGAUGGA 155 UCCAUCUGAGUCUCCAACAGGCU 274 45SS CUGUUGGAGACUCAGAUGGAA 156 UUCCAUCUGAGUCUCCAACAGGC 275 46TT GGAGACUCAGAUGGAGGAGGA 157 UCCUCCUCCAUCUGAGUCUCCAA 276 47UU GAGACUCAGAUGGAGGAGGAU 158 AUCCUCCUCCAUCUGAGUCUCCA 277 48VV AGACUCAGAUGGAGGAGGAUA 159 UAUCCUCCUCCAUCUGAGUCUCC 278 49WW GACUCAGAUGGAGGAGGAUAU 160 AUAUCCUCCUCCAUCUGAGUCUC 279 50XX ACUCAGAUGGAGGAGGAUAUU 161 AAUAUCCUCCUCCAUCUGAGUCU 280 51YY ACUCAGAUGGAGGAGGAUAUA 162 UAUAUCCUCCUCCAUCUGAGUCU 281 52ZZ UCAGAUGGAGGAGGAUAUUCU 163 AGAAUAUCCUCCUCCAUCUGAGU 282 54A3 GCAGAUGGAGGAGGAUAUUCA 164 UGAAUAUCCUCCUCCAUCUGCGU 283 56B3 UCAGAUGGAGGAGGAUAUUCA 165 UGAAUAUCCUCCUCCAUCUGAGU 284 57C3 UCAGAUGGAGGAGGAUAUUCC 166 GGAAUAUCCUCCUCCAUCUGAGU 285 62D3 CAGAUGGAGGAGGAUAUUCUG 167 CAGAAUAUCCUCCUCCAUCUGAG 286 63E3 CAGAUGGAGGAGGAUAUUCUA 168 UAGAAUAUCCUCCUCCAUCUGAG 287 64F3 AUGGAGGAGGAUAUUCUGCAG 169 CUGCAGAAUAUCCUCCUCCAUCU 288 65G3 AUGGAGGAGGAUAUUCUGCAA 170 UUGCAGAAUAUCCUCCUCCAUCU 289 69H3 AUGGAGGAGGCUAUUCUGCAG 171 CUGCAGAAUAUCCUCCUCCAUCU 288 74I3 AUGGAGGAGGUUAUUCUGCAG 172 CUGCAGAAUAUCCUCCUCCAUCU 288 80J3 AUGGAGGAGGAUAUUCUGCAG 169 CUGCAGAAUAUCCUCCUCCAUCUTTT 290 81K3 AUGGAGGAGGGUAUUCUGCAG 173 CUGCAGAAUAUCCUCCUCCAUCU 288 82L3 AUGGAGGAGGAUAUUCUGCAG 169 CUGCAGAAUAUCCUCCUCCAUCUTT 291 86M3 AGAUGGAGGAGGAUAUUCUGCAG 174 CUGCAGAAUAUCCUCCUCCAUCU 288 89N3 CAGAUGGAGGAGGAUAUUCUGCAG 175 CUGCAGAAUAUCCUCCUCCAUCU 288 90O3 CCAGAUGGAGGAGGAUAUUCUGCAG 176 CUGCAGAAUAUCCUCCUCCAUCU 288 91P3 GGAGGAGGAUAUUCUGCAGCU 177 AGCUGCAGAAUAUCCUCCUCCAU 292 92Q3 GCCCAGGCACAGAAGGUGCUA 178 UAGCACCUUCUGUGCCUGGGCCA 293 93R3 AGCGGCUAGAAGUCCAGCUGA 179 UCAGCUGGACUUCUAGCCGCUGC 294 94S3 GCGGCUAGAAGUCCAGCUGAA 180 UUCAGCUGGACUUCUAGCCGCUG 295 95T3 CGGCUAGAAGUCCAGCUGAGA 181 UCUCAGCUGGACUUCUAGCCGCU 296 96U3 CCGAGAAUUUGAGGUCUUAAA 182 UUUAAGACCUCAAAUUCUCGGUA 297 98V3 CGAGAAUUUGAGGUCUUAAAG 183 CUUUAAGACCUCAAAUUCUCGGU 298 99W3 GGAGAAUUUGAGGUCUUAAAA 184 UUUUAAGACCUCAAAUUCUCCGU 299 100X3 CGAGAAUUUGAGGUCUUAAAA 185 UUUUAAGACCUCAAAUUCUCGGU 300 109Y3 AGAAUUUGAGGUCUUAAAGGA 186 UCCUUUAAGACCUCAAAUUCUCG 301 110Z3 GAAUUUGAGGUCUUAAAGGCA 187 UGCCUUUAAGACCUCAAAUUCUC 302 111a4 AAUUUGAGGUCUUAAAGGCUA 188 UAGCCUUUAAGACCUCAAAUUCU 303 112b4 AUUUGAGGUCUUAAAGGCUCA 189 UGAGCCUUUAAGACCUCAAAUUC 304 113c4 AUCUGAGGUCUUAAAGGCUCA 190 UGAGCCUUUAAGACCUCAGAUUC 305 114d4 ACCUGAGGUCUUAAAGGCUCA 191 UGAGCCUUUAAGACCUCAGGUUC 306 115e4 UUUGAGGUCUUAAAGGCUCAA 192 UUGAGCCUUUAAGACCUCAAAUU 307 116f4 GAGGUCUUAAAGGCUCACGCU 193 AGCGUGAGCCUUUAAGACCUCAA 308 117g4 GAGGUCUUAAAGGCUCACGCA 194 UGCGUGAGCCUUUAAGACCUCAA 309 118h4 GGUCUUAAAGGCUCACGCUGA 195 UCAGCGUGAGCCUUUAAGACCUC 310 124i4 UGUCUUAAAGGCUCACGCUGC 196 GCAGCGUGAGCCUUUAAGACAUC 311 126j4 GUCUUAAAGGCUCACGCUGAA 197 UUCAGCGUGAGCCUUUAAGACCU 312 127k4 UCUUAAAGGCUCACGCUGACA 198 UGUCAGCGUGAGCCUUUAAGACC 313 128l4 CCGAAAGGCUCACGCUGACAA 199 UUGUCAGCGUGAGCCUUUCGGAC 314 129m4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGAA 315 130n4 CACAAAGGCUCACGCUGACAA 201 UUGUCAGCGUGAGCCUUUGUGAC 316 131o4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGGU 317 132p4 CCUAAAGGCUCACGCUGACAA 202 UUGUCAGCGUGAGCCUUUAGGAC 318 133q4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGCA 319 134r4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGAG 320 135s4 CUGAAAGGCUCACGCUGACAA 203 UUGUCAGCGUGAGCCUUUCAGAC 321 136t4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGGG 322 137u4 CUCAAAGGCUCACGCUGACAA 204 UUGUCAGCGUGAGCCUUUGAGAC 323 138v4 CCAAAAGGCUCACGCUGACAA 205 UUGUCAGCGUGAGCCUUUUGGAC 324 139w4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGUA 325 140x4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGGG 326 141y4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGGU 327 142z4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGGA 328 143A5 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGUG 329 144B5 CAAAAAGGCUCACGCUGACAA 206 UUGUCAGCGUGAGCCUUUUUGAC 330 145C5 CGCAAAGGCUCACGCUGACAA 207 UUGUCAGCGUGAGCCUUUGCGAC 331 146D5 CGAAAAGGCUCACGCUGACAA 208 UUGUCAGCGUGAGCCUUUUGGAC 332 147E5 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGGG 333 148F5 CAGAAAGGCUCACGCUGACAA 209 UUGUCAGCGUGAGCCUUUGUGAC 334 149G5 CCCAAAGGCUCACGCUGACAA 210 UUGUCAGCGUGAGCCUUUGGGAC 335 150H5 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGAG 336 151I5 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGCC 337 152J5 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGAU 338 153K5 CGUAAAGGCUCACGCUGACAA 211 UUGUCAGCGUGAGCCUUUAGGAC 339 154L5 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGUG 340 155M5 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGUU 341 156N5 CGGAAAGGCUCACGCUGACAA 212 UUGUCAGCGUGAGCCUUUCGGAC 342 157O5 UUAAAGGCUCACGCUGACAAA 213 UUUGUCAGCGUGAGCCUUUAAGA 343 158P5 AGGCUCACGCUGACAAGCAGA 214 UCUGCUUGUCAGCGUGAGCCUUU 344 159Q5 UGCAGCGGCAGAGGCGGGAGA 215 UCUCCCGCCUCUGCCGCUGCACG 345 160R5 GCGGCAGAGGCGGGAGAUGGU 216 ACCAUCUCCCGCCUCUGCCGCUG 346 161S5 GAGGCGGGAGAUGGUGGCACA 217 UGUGCCACCAUCUCCCGCCUCUG 347 162T5 GCGGGAGAUGGUGGCACAGCA 218 UGCUGUGCCACCAUCUCCCGCCU 348 163U5 GUGGCACAGCAGCAUCGGCUA 219 UAGCCGAUGCUGCUGUGCCACCA 349 164V5 CAGCAGCAUCGGCUGCGACAA 220 UUGUCGCAGCCGAUGCUGCUGUG 350 165W5 AGCAGCAUCGGCUGCGACAGA 221 UCUGUCGCAGCCGAUGCUGCUGU 351 166X5 GCAGCAUCGGCUGCGACAGAA 222 UUCUGUCGCAGCCGAUGCUGCUG 352 167Y5 CAGCAUCGGCUGCGACAGAUA 223 UAUCUGUCGCAGCCGAUGCUGCU 353 168Z5 AGCAUCGGCUGCGACAGAUCA 224 UGAUCUGUCGCAGCCGAUGCUGC 354 169a6 GCAUCGGCUGCGACAGAUCCA 225 UGGAUCUGUCGCAGCCGAUGCUG 355 170b6 CAUCGGCUGCGACAGAUCCAA 226 UUGGAUCUGUCGCAGCCGAUGCU 356 171c6 UCGGCUGCGACAGAUCCAGGA 227 UCCUGGAUCUGUCGCAGCCGAUG 357 172d6 GGCUGCGACAGAUCCAGGAGA 228 UCUCCUGGAUCUGUCGCAGCCGA 358 173e6 GCUGCGACAGAUCCAGGAGAA 229 UUCUCCUGGAUCUGUCGCAGCCG 359 174e7 CUGCGACAGAUCCAGGAGAGA 230 UCUCUCCUGGAUCUGUCGCAGCC 360
EXAMPLE 6
[0176] To quantify levels of the Formula 1 conjugated siRNA strands in Table 13 in tissue samples, the tissue samples are homogenized in Clarity OTX cell lysis buffer (Phenomenex) to a final tissue concentration of 100 mg/ml. (For the sense strands, the OH metabolite is quantified because of rapid dephosphorylation in vivo). Plasma samples are diluted in Clarity OTX buffer 1:10 (v/v). Samples are subjected to solid phase extraction using a weak ion exchange resin (Waters, Oasis μElution SPE plate). Samples are eluted and subjected to liquid chromatography-high resolution mass spectrometry (LC-HRMS) as described in ASSAY and Drug Development Technologies, 10(3) pages 278-288 (2012)
[0177] Plasma exposure in mouse or cynomolgus monkeys is measured following subcutaneous administration through 6 hrs in and 24 hrs in monkey. Liver exposure is determined in mice at 6, 24, 72, 168, 336 and 1343 hrs. Results are subjected to non-compartmental analysis using the Phoenix software NCA package. C.sub.max, t.sub.1/2 and AUC is determined in plasma for both species, liver C.sub.max, t.sub.1/2 and AUC is determined in mouse, and liver t.sub.1/2 and AUC is determined in monkey.
[0178] Table 13 shows the liver exposure of 6 conjugated siRNAs in cynomolgus monkeys. Livers were harvested and subject to the above detection method using LC/MS about 2 and 12 weeks after treatment with subcutaneous 3 mg/kg of the listed ANGPTL8 siRNAs conjugated (at the 3′ end nucleotide of the sense strand) to the GalNac containing moiety of Formula I via Linker 2 (having Formula III).
[0179] Tables 12a and 12b show two exemplary experiments of the percent knockdown of ANGPTL8 mRNA as determined by RT-PCR of liver homogenate that is harvested from cynomolgus monkeys pre (1 monkey) and post dose (several monkeys as noted below, each 3 mg/kg) of conjugated ANGPTL8 siRNAs, where the GalNac containing moiety of Formula I is conjugated to the 3′ end nucleotide of the sense strand, via Linker 2 (having Formula III).
TABLE-US-00012 TABLE 12a Cynomolgus monkey Potency and Durability 15 Days 57 Days 85 Days ANGPTL8 ANGPTL8 ANGPTL8 mRNA mRNA mRNA (% KD ± SE (% KD from (% KD from Sense Antisense from predose predose predose siRNA SEQ ID SEQ ID biopsy) biopsy) biopsy) conjugate NO NO 3 mg/kg 3 mg/kg 3 mg/kg iii# 363 369 34 40 5 iv# 364 370 21 19 45 v* 365 371 89 79 57 vi* 366 372 69 63 12. #n = 4 *n = 5
TABLE-US-00013 TABLE 12b Cynomolgus monkey Potency and Durability 15 Days 57 Days 85 Days ANGPTL8 ANGPTL8 ANGPTL8 mRNA mRNA mRNA Sense Antisense (% KD from (% KD from (% KD from siRNA SEQ ID SEQ ID predose biopsy) predose biopsy) predose biopsy) conjugate NO NO 3 mg/kg 3 mg/kg 3 mg/kg i 361 367 88 ± 5*** 74 ± 10** 63 ± 37* ii 362 368 69 ± 31 54 ± 18 25 ± 30 n = 6 *P ≤ 0.05, **P ≤ 0.01, ***P ≤ 0.005 vs pre-dose biopsy is statistically significant by MMRM
TABLE-US-00014 TABLE 13 Cynomolgus PK Properties 2 week 12 week Sense Antisense Liver Liver Liver siRNA SEQ ID SEQ ID exposure exposure t.sub.1/2 conjugate NO NO (μg/g) (μg/g) (days) i 361 367 22.0 1.9 33 ii 362 368 4.6 <0.1 <9 iii 363 369 9.0 0.1 15 iv 364 370 5.9 0.3 29 v 365 371 11.0 0.8 25 vi 366 372 5.4 0.4 30
[0180] The following numbered paragraphs provide additional embodiments of the RNAi agents and RNAi molecules disclosed herein: [0181] 1. An RNA interference (RNAi) molecule or RNAi agent comprising Formula I:
##STR00006## [0182] and a one or more oligonucleotides comprising 15 to 40 nucleotides that bind SEQ ID NO:1 and R is conjugated to an oligonucleotide, optionally via a linker. [0183] 2. The RNAi molecule or RNAi agent of paragraph 1, wherein the one or more oligonucleotides that bind one or more of the sequences as set forth in Table 1 or Table 2. [0184] 3. The RNAi molecule or RNAi agent of paragraph 1, wherein the one or more oligonucleotides comprise a sequence as set forth in Table 2. [0185] 4. The RNAi molecule or RNAi agent of any one of paragraphs 1 to 3, wherein the one or more oligonucleotides comprises one or more modified nucleotides. [0186] 5. The RNAi molecule or RNAi agent of paragraph 4, wherein the one or more modified nucleotides are modified on the 2′ position of the sugar, or on the pyrimidine or purine ring, or both. [0187] 6. The RNAi molecule or RNAi agent of paragraph 4 or 5, wherein the one or more modified nucleotides is a modified nucleotide comprising a modified nucleotide comprising a 2′ halogenated sugar group, a modified nucleotide comprising a 2′ methylated sugar group, a modified nucleotide comprising a 2′ methoxylated sugar group, a modified nucleotide comprising a methylated purine, or a modified nucleotide comprising a methylated pyrimidine ring, or any combination thereof. [0188] 7. The RNAi molecule or RNAi agent of any one of paragraphs 4 to 6, wherein the one or more modified nucleotides are modified on the 2′ position of the sugar and the modification comprises one or more 2′ fluoro groups or one or more 2′ methoxy groups, or both. [0189] 8. The RNAi molecule or RNAi agent of any one of paragraphs 4 to 7, wherein the one or more modified nucleotides are modified on the 2′ position of the sugar, and the sugar is ribose. [0190] 9. The RNAi molecule or RNAi agent of any one of paragraphs 1 to 8, wherein the one or more oligonucleotides comprise one or more modified bonds, and wherein the one or more modified bonds is a phosphorothioate bond. [0191] 10. The RNAi molecule or RNAi agent of any one of paragraphs 1 to 9, wherein the one or more oligonucleotides comprise an siRNA, and wherein the siRNA comprises a sense strand and an antisense strand. [0192] 11. The RNAi molecule or RNAi agent of paragraph 10, wherein the sense strand and the antisense strand are each independently between 15 to 40 nucleotides in length. [0193] 12. The RNAi molecule or RNAi agent of any one of paragraphs 1 to 11, further comprising a linker. [0194] 13. The RNAi molecule or RNAi agent of paragraph 12, wherein the linker comprises one of the following:
##STR00007## [0195] 14. The RNAi molecule or RNAi agent of any one of paragraphs 1 to 13, wherein the one or more oligonucleotides comprise an siRNA. [0196] 15. The RNAi molecule or RNAi agent of paragraph 14, wherein the siRNA comprises a sense strand and an antisense strand. [0197] 16. The RNAi molecule or RNAi agent of paragraph 15, wherein the sense strand and the antisense strand are each independently between 15 to 40 nucleotides in length. [0198] 17. The RNAi molecule or RNAi agent of any one of paragraphs 14 to 16, wherein the sense strand and the antisense strand are each independently between 18 to 25 nucleotides in length. [0199] 18. The RNAi molecule or RNAi agent of paragraph 17, wherein the sense strand and the antisense strand anneal, and optionally comprise one or more 5′ or 3′ nucleotide overhangs. [0200] 19. The RNAi molecule or RNAi agent of any one of paragraphs 14 to 18, wherein the 5′ end of the antisense strand is optionally phosphorylated. [0201] 20. The RNAi molecule or RNAi agent of any one of paragraphs 1 to 19, comprising a compound of Formula I and the one or more oligonucleotides that bind to any one of the sequences having SEQ ID NO:3 to SEQ ID NO:123 as shown in Table 1. [0202] 21. The RNAi molecule or RNAi agent of any one of paragraphs 1 to 20, comprising a compound of Formula I and one or more oligonucleotides that bind to any one of the sequences shown in Table 2. [0203] 22. The RNAi molecule or RNAi agent of any of the preceding paragraphs, wherein one or more nucleotides are modified on the 2′ position of the ribose. [0204] 23. The RNAi molecule or RNAi agent of any of the preceding paragraphs, wherein the ribose of at least one nucleotide is modified with a 2′ fluoro group or a 2′ methoxy group. [0205] 24. The RNAi molecule or RNAi agent of any of the preceding paragraphs, wherein the siRNA comprises one or more modified bonds. [0206] 25. The RNAi molecule or RNAi agent of paragraph 24, wherein the one or more modified bonds is a phosphorothioate bond. [0207] 26. The RNAi molecule or RNAi agent of any one of paragraphs 1 to 25, wherein the siRNA comprises a sense strand comprising a sequence of any one of SEQ ID NO:361, SEQ ID NO:362, SEQ ID NO:363, SEQ ID NO:364, SEQ ID NO:365, or SEQ ID NO:366. [0208] 27. The RNAi molecule or RNAi agent of any one of paragraphs 1 to 25, wherein the siRNA comprises an antisense strand comprising a sequence of any one of SEQ ID NO:367, SEQ ID NO:368, SEQ ID NO:369, SEQ ID NO:370, SEQ ID NO:371, or SEQ ID NO:372. [0209] 28. The RNAi molecule or RNAi agent of any one of paragraphs 1 to 27, wherein the siRNA comprises a sense strand and an antisense strand selected from the pairs of sequences as set forth in a-f: [0210] a. SEQ ID NO: 361 and SEQ ID NO:367; [0211] b. SEQ ID NO:362 and SEQ ID NO:368; [0212] c. SEQ ID NO: 363 and SEQ ID NO:369; [0213] d. SEQ ID NO: 364 and SEQ ID NO:370; [0214] e. SEQ ID NO: 365 and SEQ ID NO:371; or [0215] f. SEQ ID NO: 366 and SEQ ID NO:372. [0216] 29. A pharmaceutical composition comprising an RNAi molecule or RNAi agent of any one of paragraphs 1 to 28 and at least one pharmaceutically acceptable excipient. [0217] 30. A method of treating dyslipidemia comprising administering an RNAi molecule or RNAi agent of any one of paragraphs 1 to 28, or a pharmaceutical composition thereof, to a patient in need thereof. [0218] 31. A method of treating a cardiovascular disease comprising administering an effective amount of the RNAi molecule or RNAi agent of any one of paragraphs 1 to 28, or a pharmaceutical composition thereof, to a patient in need thereof [0219] 32. A method of preventing a cardiovascular event comprising administering an effective amount of an RNAi molecule or RNAi agent of any one of paragraphs 1 to 28, or a pharmaceutical composition thereof, to a patient in need thereof. [0220] 33. The method of paragraph 32, wherein the cardiovascular event is myocardial infarction. [0221] 34. A method of decreasing hospitalizations related to cardiovascular disease or events comprising administering an RNAi molecule or RNAi agent of any one of paragraphs 1 to 28, or a pharmaceutical composition thereof, to a patient in need thereof [0222] 35. A method of treating non-alcoholic fatty liver disease (NAFLD) comprising administering an RNAi molecule or RNAi agent of any one of paragraphs 1 to 28, or a pharmaceutical composition thereof, to a patient in need thereof. [0223] 36. The method of paragraph 35, wherein the NAFLD is non-alcoholic steatohepatitis (NASH). [0224] 37. A method of lowering triglyceride levels, comprising administering an RNAi molecule or RNAi agent of any one of paragraphs 1 to 28, or a pharmaceutical composition thereof, to a patient in need thereof [0225] 38. A method of decreasing inhibition of lipoprotein lipase (LPL) comprising administering an RNAi molecule or RNAi agent of any one of paragraphs 1 to 28, or a pharmaceutical composition thereof, to a patient in need thereof. [0226] 39. A method of increasing catabolism of triglyceride rich lipoproteins comprising administering an RNAi molecule or RNAi agent of any one of paragraphs 1 to 28, or a pharmaceutical composition thereof, to a patient in need thereof. [0227] 40. A method of treating a liver disease in a patient that would benefit from decreasing expression levels of ANGPTL8, comprising administering an RNAi molecule or RNAi agent of any one of paragraphs 1 to 28, or a pharmaceutical composition thereof, to a patient in need thereof.
TABLE-US-00015 SEQUENCE LISTING Homo sapiens angiopoietin like 8 (ANGPTL8) NCBI Reference Sequence: NM_018687.7 SEQ ID NO: 1 ATACCTTAGA CCCTCAGTCA TGCCAGTGCC TGCTCTGTGC CTGCTCTGGG CCCTGGCAAT GGTGACCCGG CCTGCCTCAG CGGCCCCCAT GGGCGGCCCA GAACTGGCAC AGCATGAGGA GCTGACCCTG CTCTTCCATG GGACCCTGCA GCTGGGCCAG GCCCTCAACG GTGTGTACAG GACCACGGAG GGACGGCTGA CAAAGGCCAG GAACAGCCTG GGTCTCTATG GCCGCACAAT AGAACTCCTG GGGCAGGAGG TCAGCCGGGG CCGGGATGCA GCCCAGGAAC TTCGGGCAAG CCTGTTGGAG ACTCAGATGG AGGAGGATAT TCTGCAGCTG CAGGCAGAGG CCACAGCTGA GGTGCTGGGG GAGGTGGCCC AGGCACAGAA GGTGCTACGG GACAGCGTGC AGCGGCTAGA AGTCCAGCTG AGGAGCGCCT GGCTGGGCCC TGCCTACCGA GAATTTGAGG TCTTAAAGGC TCACGCTGAC AAGCAGAGCC ACATCCTATG GGCCCTCACA GGCCACGTGC AGCGGCAGAG GCGGGAGATG GTGGCACAGC AGCATCGGCT GCGACAGATC CAGGAGAGAC TCCACACAGC GGCGCTCCCA GCCTGAATCT GCCTGGATGG AACTGAGGAC CAATCATGCT GCAAGGAACA CTTCCACGCC CCGTGAGGCC CCTGTGCAGG GAGGAGCTGC CTGTTCACTG GGATCAGCCA GGGCGCCGGG CCCCACTTCT GAGCACAGAG CAGAGACAGA CGCAGGCGGG GACAAAGGCA GAGGATGTAG CCCCATTGGG GAGGGGTGGA GGAAGGACAT GTACCCTTTC ATGCCTACAC ACCCCTCATT AAAGCAGAGT CGTGGCATCT GA ANGPTL3 sequence used for expression in mice SEQ ID NO: 2 ATGTTCACCATCAAGCTGCTGCTGTTCATCGTGCCCCTCGTGATCAGCA GCAGAATCGACCAGGACAACAGCAGCTTCGACAGCCTGAGCCCCGAGCC CAAGAGCAGATTCGCCATGCTGGACGACGTGAAGATCCTGGCCAACGGC CTGCTGCAGCTGGGCCACGGCCTGAAGGATTTCGTGCACAAGACCAAGG GCCAGATCAACGACATCTTCCAGAAGCTGAACATCTTCGACCAGAGCTT CTACGACCTGAGCCTGCAGACCAGCGAGATCAAAGAGGAAGAGAAAGAG CTGCGGAGGACCACCTACAAGCTGCAAGTGAAGAACGAGGAAGTGAAAA ACATGAGCCTGGAACTGAACAGCAAGCTGGAAAGCCTGCTGGAAGAAAA GATTCTGCTGCAGCAGAAAGTGAAGTACCTGGAAGAACAGCTGACCAAC CTGATCCAGAACCAGCCCGAGACACCCGAGCACCCCGAAGTGACCAGCC TGAAAACCTTCGTGGAAAAGCAGGACAACTCCATCAAGGACCTGCTGCA GACCGTGGAAGATCAGTACAAGCAGCTGAACCAGCAGCACTCCCAGATC AAAGAAATCGAGAACCAGCTGAGGCGGACCAGCATCCAGGAACCCACCG AGATCAGCCTGTCCAGCAAGCCCAGAGCCCCCAGAACAACCCCATTCCT GCAGCTGAATGAGATCCGGAACGTGAAGCACGACGGCATCCCTGCCGAG TGCACCACCATCTACAACAGAGGCGAGCACACCAGCGGGATGTACGCCA TCAGACCCAGCAACAGCCAGGTGTTCCACGTGTACTGCGACGTGATCAG CGGCAGCCCCTGGACACTGATCCAGCACAGAATCGATGGCAGCCAGAAC TTCAACGAGACATGGGAGAACTATAAGTACGGCTTCGGCAGACTGGACG GCGAGTTTTGGCTGGGCCTGGAAAAGATCTACAGCATCGTGAAGCAGAG CAACTACGTGCTGAGAATCGAGCTGGAAGATTGGAAGGACAACAAGCAC TACATCGAGTACAGCTTCTACCTGGGCAACCACGAGACAAACTACACCC TGCACCTGGTGGCCATCACCGGCAACGTGCCAAACGCCATCCCCGAGAA CAAGGATCTGGTGTTCAGCACCTGGGACCACAAGGCTAAGGGCCACTTC AACTGCCCCGAGGGCTACTCTGGCGGCTGGTGGTGGCATGATGAGTGCG GCGAGAACAACCTGAACGGCAAGTACAACAAGCCCAGGGCCAAGAGCAA GCCTGAGAGAAGAAGAGGCCTGTCCTGGAAGTCCCAGAACGGCAGGCTG TACTCTATCAAGAGCACCAAGATGCTGATCCACCCCACCGACAGCGAGA GCTTCGAGTGATAA
TABLE-US-00016 TABLE 1 Target and antisense sequences for designed siRNAs SEQ SEQ ID NO Start End 18 mer Target DNA ID NO 18 mer Antisense (DNA Position Position Sequence (RNA RNA sequence SEQ) on DNA on DNA (5′-3′) SEQ) (5′-3′) 3 120 137 AGCTGACCCTGCTCTTCC 405 GGAAGAGCAGGGUCAGCU 4 141 158 GGACCCTGCAGCTGGGCC 406 GGCCCAGCUGCAGGGUCC 5 150 167 AGCTGGGCCAGGCCCTCA 407 UGAGGGCCUGGCCCAGCU 6 185 202 ACGGAGGGACGGCTGACA 408 UGUCAGCCGUCCCUCCGU 7 186 203 CGGAGGGACGGCTGACAA 409 UUGUCAGCCGUCCCUCCG 8 191 208 GGACGGCTGACAAAGGCC 410 GGCCUUUGUCAGCCGUCC 9 194 211 CGGCTGACAAAGGCCAGG 411 CCUGGCCUUUGUCAGCCG 10 195 212 GGCTGACAAAGGCCAGGA 412 UCCUGGCCUUUGUCAGCC 11 197 214 CTGACAAAGGCCAGGAAC 413 GUUCCUGGCCUUUGUCAG 12 210 227 GGAACAGCCTGGGTCTCT 414 AGAGACCCAGGCUGUUCC 13 211 228 GAACAGCCTGGGTCTCTA 415 UAGAGACCCAGGCUGUUC 14 215 232 AGCCTGGGTCTCTATGGC 416 GCCAUAGAGACCCAGGCU 15 217 234 CCTGGGTCTCTATGGCCG 417 CGGCCAUAGAGACCCAGG 16 218 235 CTGGGTCTCTATGGCCGC 418 GCGGCCAUAGAGACCCAG 17 219 236 TGGGTCTCTATGGCCGCA 419 UGCGGCCAUAGAGACCCA 18 220 237 GGGTCTCTATGGCCGCAC 420 GUGCGGCCAUAGAGACCC 19 259 276 GGTCAGCCGGGGCCGGGA 421 UCCCGGCCCCGGCUGACC 20 267 284 GGGGCCGGGATGCAGCCC 422 GGGCUGCAUCCCGGCCCC 21 270 287 GCCGGGATGCAGCCCAGG 423 CCUGGGCUGCAUCCCGGC 22 271 288 CCGGGATGCAGCCCAGGA 424 UCCUGGGCUGCAUCCCGG 23 273 290 GGGATGCAGCCCAGGAAC 425 GUUCCUGGGCUGCAUCCC 24 274 291 GGATGCAGCCCAGGAACT 426 AGUUCCUGGGCUGCAUCC 25 281 298 GCCCAGGAACTTCGGGCA 427 UGCCCGAAGUUCCUGGGC 26 282 299 CCCAGGAACTTCGGGCAA 428 UUGCCCGAAGUUCCUGGG 27 283 300 CCAGGAACTTCGGGCAAG 429 CUUGCCCGAAGUUCCUGG 28 284 301 CAGGAACTTCGGGCAAGC 430 GCUUGCCCGAAGUUCCUG 29 285 302 AGGAACTTCGGGCAAGCC 431 GGCUUGCCCGAAGUUCCU 30 286 303 GGAACTTCGGGCAAGCCT 432 AGGCUUGCCCGAAGUUCC 31 287 304 GAACTTCGGGCAAGCCTG 433 CAGGCUUGCCCGAAGUUC 32 290 307 CTTCGGGCAAGCCTGTTG 434 CAACAGGCUUGCCCGAAG 33 291 308 TTCGGGCAAGCCTGTTGG 435 CCAACAGGCUUGCCCGAA 34 293 310 CGGGCAAGCCTGTTGGAG 436 CUCCAACAGGCUUGCCCG 35 297 314 CAAGCCTGTTGGAGACTC 437 GAGUCUCCAACAGGCUUG 36 299 316 AGCCTGTTGGAGACTCAG 438 CUGAGUCUCCAACAGGCU 37 300 317 GCCTGTTGGAGACTCAGA 439 UCUGAGUCUCCAACAGGC 38 303 320 TGTTGGAGACTCAGATGG 440 CCAUCUGAGUCUCCAACA 39 304 321 GTTGGAGACTCAGATGGA 441 UCCAUCUGAGUCUCCAAC 40 309 326 AGACTCAGATGGAGGAGG 442 CCUCCUCCAUCUGAGUCU 41 310 327 GACTCAGATGGAGGAGGA 443 UCCUCCUCCAUCUGAGUC 42 311 328 ACTCAGATGGAGGAGGAT 444 AUCCUCCUCCAUCUGAGU 43 312 329 CTCAGATGGAGGAGGATA 445 UAUCCUCCUCCAUCUGAG 44 313 330 TCAGATGGAGGAGGATAT 446 AUAUCCUCCUCCAUCUGA 45 314 331 CAGATGGAGGAGGATATT 447 AAUAUCCUCCUCCAUCUG 46 315 332 AGATGGAGGAGGATATTC 448 GAAUAUCCUCCUCCAUCU 47 316 333 GATGGAGGAGGATATTCT 449 AGAAUAUCCUCCUCCAUC 48 317 334 ATGGAGGAGGATATTCTG 450 CAGAAUAUCCUCCUCCAU 49 319 336 GGAGGAGGATATTCTGCA 451 UGCAGAAUAUCCUCCUCC 50 321 338 AGGAGGATATTCTGCAGC 452 GCUGCAGAAUAUCCUCCU 51 372 389 AGGTGGCCCAGGCACAGA 453 UCUGUGCCUGGGCCACCU 52 379 396 CCAGGCACAGAAGGTGCT 454 AGCACCUUCUGUGCCUGG 53 411 428 AGCGGCTAGAAGTCCAGC 455 GCUGGACUUCUAGCCGCU 54 412 429 GCGGCTAGAAGTCCAGCT 456 AGCUGGACUUCUAGCCGC 55 413 430 CGGCTAGAAGTCCAGCTG 457 CAGCUGGACUUCUAGCCG 56 414 431 GGCTAGAAGTCCAGCTGA 458 UCAGCUGGACUUCUAGCC 57 415 432 GCTAGAAGTCCAGCTGAG 459 CUCAGCUGGACUUCUAGC 58 420 437 AAGTCCAGCTGAGGAGCG 460 CGCUCCUCAGCUGGACUU 59 421 438 AGTCCAGCTGAGGAGCGC 461 GCGCUCCUCAGCUGGACU 60 438 455 CCTGGCTGGGCCCTGCCT 462 AGGCAGGGCCCAGCCAGG 61 459 476 GAGAATTTGAGGTCTTAA 463 UUAAGACCUCAAAUUCUC 62 460 477 AGAATTTGAGGTCTTAAA 464 UUUAAGACCUCAAAUUCU 63 462 479 AATTTGAGGTCTTAAAGG 465 CCUUUAAGACCUCAAAUU 64 463 480 ATTTGAGGTCTTAAAGGC 466 GCCUUUAAGACCUCAAAU 65 464 481 TTTGAGGTCTTAAAGGCT 467 AGCCUUUAAGACCUCAAA 66 465 482 TTGAGGTCTTAAAGGCTC 468 GAGCCUUUAAGACCUCAA 67 466 483 TGAGGTCTTAAAGGCTCA 469 UGAGCCUUUAAGACCUCA 68 467 484 GAGGTCTTAAAGGCTCAC 470 GUGAGCCUUUAAGACCUC 69 469 486 GGTCTTAAAGGCTCACGC 471 GCGUGAGCCUUUAAGACC 70 471 488 TCTTAAAGGCTCACGCTG 472 CAGCGUGAGCCUUUAAGA 71 472 489 CTTAAAGGCTCACGCTGA 473 UCAGCGUGAGCCUUUAAG 72 473 490 TTAAAGGCTCACGCTGAC 474 GUCAGCGUGAGCCUUUAA 73 474 491 TAAAGGCTCACGCTGACA 475 UGUCAGCGUGAGCCUUUA 74 475 492 AAAGGCTCACGCTGACAA 476 UUGUCAGCGUGAGCCUUU 75 476 493 AAGGCTCACGCTGACAAG 477 CUUGUCAGCGUGAGCCUU 76 477 494 AGGCTCACGCTGACAAGC 478 GCUUGUCAGCGUGAGCCU 77 479 496 GCTCACGCTGACAAGCAG 479 CUGCUUGUCAGCGUGAGC 78 480 497 CTCACGCTGACAAGCAGA 480 UCUGCUUGUCAGCGUGAG 79 481 498 TCACGCTGACAAGCAGAG 481 CUCUGCUUGUCAGCGUGA 80 482 499 CACGCTGACAAGCAGAGC 482 GCUCUGCUUGUCAGCGUG 81 483 500 ACGCTGACAAGCAGAGCC 483 GGCUCUGCUUGUCAGCGU 82 485 502 GCTGACAAGCAGAGCCAC 484 GUGGCUCUGCUUGUCAGC 83 513 530 CCCTCACAGGCCACGTGC 485 GCACGUGGCCUGUGAGGG 84 514 531 CCTCACAGGCCACGTGCA 486 UGCACGUGGCCUGUGAGG 85 520 537 AGGCCACGTGCAGCGGCA 487 UGCCGCUGCACGUGGCCU 86 521 538 GGCCACGTGCAGCGGCAG 488 CUGCCGCUGCACGUGGCC 87 524 541 CACGTGCAGCGGCAGAGG 489 CCUCUGCCGCUGCACGUG 88 530 547 CAGCGGCAGAGGCGGGAG 490 CUCCCGCCUCUGCCGCUG 89 534 551 GGCAGAGGCGGGAGATGG 491 CCAUCUCCCGCCUCUGCC 90 540 557 GGCGGGAGATGGTGGCAC 492 GUGCCACCAUCUCCCGCC 91 543 560 GGGAGATGGTGGCACAGC 493 GCUGUGCCACCAUCUCCC 92 546 563 AGATGGTGGCACAGCAGC 494 GCUGCUGUGCCACCAUCU 93 553 570 GGCACAGCAGCATCGGCT 495 AGCCGAUGCUGCUGUGCC 94 555 572 CACAGCAGCATCGGCTGC 496 GCAGCCGAUGCUGCUGUG 95 557 574 CAGCAGCATCGGCTGCGA 497 UCGCAGCCGAUGCUGCUG 96 558 575 AGCAGCATCGGCTGCGAC 498 GUCGCAGCCGAUGCUGCU 97 559 576 GCAGCATCGGCTGCGACA 499 UGUCGCAGCCGAUGCUGC 98 560 577 CAGCATCGGCTGCGACAG 500 CUGUCGCAGCCGAUGCUG 99 561 578 AGCATCGGCTGCGACAGA 501 UCUGUCGCAGCCGAUGCU 100 562 579 GCATCGGCTGCGACAGAT 502 AUCUGUCGCAGCCGAUGC 101 563 580 CATCGGCTGCGACAGATC 503 GAUCUGUCGCAGCCGAUG 102 564 581 ATCGGCTGCGACAGATCC 504 GGAUCUGUCGCAGCCGAU 103 565 582 TCGGCTGCGACAGATCCA 505 UGGAUCUGUCGCAGCCGA 104 567 584 GGCTGCGACAGATCCAGG 506 CCUGGAUCUGUCGCAGCC 105 569 586 CTGCGACAGATCCAGGAG 507 CUCCUGGAUCUGUCGCAG 106 570 587 TGCGACAGATCCAGGAGA 508 UCUCCUGGAUCUGUCGCA 107 571 588 GCGACAGATCCAGGAGAG 509 CUCUCCUGGAUCUGUCGC 108 607 624 CCCAGCCTGAATCTGCCT 510 AGGCAGAUUCAGGCUGGG 109 610 627 AGCCTGAATCTGCCTGGA 511 UCCAGGCAGAUUCAGGCU 110 611 628 GCCTGAATCTGCCTGGAT 512 AUCCAGGCAGAUUCAGGC 111 619 636 CTGCCTGGATGGAACTGA 513 UCAGUUCCAUCCAGGCAG 112 644 661 TCATGCTGCAAGGAACAC 514 GUGUUCCUUGCAGCAUGA 113 652 669 CAAGGAACACTTCCACGC 515 GCGUGGAAGUGUUCCUUG 114 655 672 GGAACACTTCCACGCCCC 516 GGGGCGUGGAAGUGUUCC 115 698 715 TGCCTGTTCACTGGGATC 517 GAUCCCAGUGAACAGGCA 116 699 716 GCCTGTTCACTGGGATCA 518 UGAUCCCAGUGAACAGGC 117 701 718 CTGTTCACTGGGATCAGC 519 GCUGAUCCCAGUGAACAG 118 702 719 TGTTCACTGGGATCAGCC 520 GGCUGAUCCCAGUGAACA 119 709 726 TGGGATCAGCCAGGGCGC 521 GCGCCCUGGCUGAUCCCA 120 710 727 GGGATCAGCCAGGGCGCC 522 GGCGCCCUGGCUGAUCCC 121 847 864 CATTAAAGCAGAGTCGTG 523 CACGACUCUGCUUUAAUG 122 848 865 ATTAAAGCAGAGTCGTGG 524 CCACGACUCUGCUUUAAU 123 850 867 TAAAGCAGAGTCGTGGCA 525 UGCCACGACUCUGCUUUA
TABLE-US-00017 TABLE 2 SEQ SEQ Antisense ID NO Start End 18 mer DNA ID NO RNA (DNA Position Position Sequence (RNA sequence SEQ) on DNA on DNA (5′-3′) SEQ) (5′-3′) 3 120 137 AGCTGACCCTGCTCTTCC 405 GGAAGAGCAGGGUCAGCU 6 185 202 ACGGAGGGACGGCTGACA 408 UGUCAGCCGUCCCUCCGU 10 195 212 GGCTGACAAAGGCCAGGA 412 UCCUGGCCUUUGUCAGCC 11 197 214 CTGACAAAGGCCAGGAAC 413 GUUCCUGGCCUUUGUCAG 12 210 227 GGAACAGCCTGGGTCTCT 414 AGAGACCCAGGCUGUUCC 13 211 228 GAACAGCCTGGGTCTCTA 415 UAGAGACCCAGGCUGUUC 16 218 235 CTGGGTCTCTATGGCCGC 418 GCGGCCAUAGAGACCCAG 18 220 237 GGGTCTCTATGGCCGCAC 420 GUGCGGCCAUAGAGACCC 23 273 290 GGGATGCAGCCCAGGAAC 425 GUUCCUGGGCUGCAUCCC 24 274 291 GGATGCAGCCCAGGAACT 426 AGUUCCUGGGCUGCAUCC 26 282 299 CCCAGGAACTTCGGGCAA 428 UUGCCCGAAGUUCCUGGG 27 283 300 CCAGGAACTTCGGGCAAG 429 CUUGCCCGAAGUUCCUGG 30 286 303 GGAACTTCGGGCAAGCCT 432 AGGCUUGCCCGAAGUUCC 31 287 304 GAACTTCGGGCAAGCCTG 433 CAGGCUUGCCCGAAGUUC 32 290 307 CTTCGGGCAAGCCTGTTG 434 CAACAGGCUUGCCCGAAG 33 291 308 TTCGGGCAAGCCTGTTGG 435 CCAACAGGCUUGCCCGAA 34 293 310 CGGGCAAGCCTGTTGGAG 436 CUCCAACAGGCUUGCCCG 35 297 314 CAAGCCTGTTGGAGACTC 437 GAGUCUCCAACAGGCUUG 36 299 316 AGCCTGTTGGAGACTCAG 438 CUGAGUCUCCAACAGGCU 37 300 317 GCCTGTTGGAGACTCAGA 439 UCUGAGUCUCCAACAGGC 38 303 320 TGTTGGAGACTCAGATGG 440 CCAUCUGAGUCUCCAACA 39 304 321 GTTGGAGACTCAGATGGA 441 UCCAUCUGAGUCUCCAAC 40 309 326 AGACTCAGATGGAGGAGG 442 CCUCCUCCAUCUGAGUCU 41 310 327 GACTCAGATGGAGGAGGA 443 UCCUCCUCCAUCUGAGUC 42 311 328 ACTCAGATGGAGGAGGAT 444 AUCCUCCUCCAUCUGAGU 43 312 329 CTCAGATGGAGGAGGATA 445 UAUCCUCCUCCAUCUGAG 44 313 330 TCAGATGGAGGAGGATAT 446 AUAUCCUCCUCCAUCUGA 46 315 332 AGATGGAGGAGGATATTC 448 GAAUAUCCUCCUCCAUCU 47 316 333 GATGGAGGAGGATATTCT 449 AGAAUAUCCUCCUCCAUC 49 319 336 GGAGGAGGATATTCTGCA 451 UGCAGAAUAUCCUCCUCC 50 321 338 AGGAGGATATTCTGCAGC 452 GCUGCAGAAUAUCCUCCU 52 379 396 CCAGGCACAGAAGGTGCT 454 AGCACCUUCUGUGCCUGG 55 413 430 CGGCTAGAAGTCCAGCTG 457 CAGCUGGACUUCUAGCCG 56 414 431 GGCTAGAAGTCCAGCTGA 458 UCAGCUGGACUUCUAGCC 57 415 432 GCTAGAAGTCCAGCTGAG 459 CUCAGCUGGACUUCUAGC 61 459 476 GAGAATTTGAGGTCTTAA 463 UUAAGACGUCAAAUUCUC 62 460 477 AGAATTTGAGGTCTTAAA 464 UUUAAGACGUCAAAUUCU 63 462 479 AATTTGAGGTCTTAAAGG 465 CCUUUAAGACCUCAAAUU 64 463 480 ATTTGAGGTCTTAAAGGC 466 GCCUUUAAGACCUCAAAU 65 464 481 TTTGAGGTCTTAAAGGCT 467 AGCCUUUAAGACCUCAAA 66 465 482 TTGAGGTCTTAAAGGCTC 468 GAGCCUUUAAGACCUCAA 67 466 483 TGAGGTCTTAAAGGCTCA 469 UGAGCCUUUAAGACCUCA 69 469 486 GGTCTTAAAGGCTCACGC 471 GCGUGAGCCUUUAAGACC 70 471 488 TCTTAAAGGCTCACGCTG 472 CAGCGUGAGCCUUUAAGA 71 472 489 CTTAAAGGCTCACGCTGA 473 UCAGCGUGAGCCUUUAAG 72 473 490 TTAAAGGCTCACGCTGAC 474 GUCAGCGUGAGCCUUUAA 73 474 491 TAAAGGCTCACGCTGACA 475 UGUCAGCGUGAGCCUUUA 74 475 492 AAAGGCTCACGCTGACAA 476 UUGUCAGCGUGAGCCUUU 77 479 496 GCTCACGCTGACAAGCAG 479 CUGCUUGUCAGCGUGAGC 88 530 547 CAGCGGCAGAGGCGGGAG 490 CUCCCGCCUCUGCCGCUG 89 534 551 GGCAGAGGCGGGAGATGG 491 CCAUCUCCCGCCUCUGCC 90 540 557 GGCGGGAGATGGTGGCAC 492 GUGCCACCAUCUCCCGCC 91 543 560 GGGAGATGGTGGCACAGC 493 GCUGUGCCACCAUCUCCC 93 553 570 GGCACAGCAGCATCGGCT 495 AGCCGAUGCUGCUGUGCC 97 559 576 GCAGCATCGGCTGCGACA 499 UGUCGCAGCCGAUGCUGC 98 560 577 CAGCATCGGCTGCGACAG 500 CUGUCGCAGCCGAUGCUG 99 561 578 AGCATCGGCTGCGACAGA 501 UCUGUCGCAGCCGAUGCU 100 562 579 GCATCGGCTGCGACAGAT 502 AUCUGUCGCAGCCGAUGC 101 563 580 CATCGGCTGCGACAGATC 503 GAUCUGUCGCAGCCGAUG 102 564 581 ATCGGCTGCGACAGATCC 504 GGAUCUGUCGCAGCCGAU 103 565 582 TCGGCTGCGACAGATCCA 505 UGGAUCUGUCGCAGCCGA 104 567 584 GGCTGCGACAGATCCAGG 506 CCUGGAUCUGUCGCAGCC 105 569 586 CTGCGACAGATCCAGGAG 507 CUCCUGGAUCUGUCGCAG 106 570 587 TGCGACAGATCCAGGAGA 508 UCUCCUGGAUCUGUCGCA 107 571 588 GCGACAGATCCAGGAGAG 509 CUCUCCUGGAUCUGUCGC
TABLE-US-00018 TABLE 3 Sense SEQ or ID Anti- Sense or Anti-Sense with Delivery NO Sense modifications (5′ to 3′) Moiety 381 Sense mC*mG*mAmGmAmAfUmUfUfGfA Control mGmGmUmCmUmUmAmA*mA*mG GalNAc 397 Anti- PmC*fU*mUmUmAfAmGmAmCmCm sense UmCmAfAmAfUmUmCmUmCmG* mG*mU 382 Sense mC*mG*mAmGmAmAfUmUfUfGfA Formula mGmGmUmCmUmUmAmA*mA*mG I 398 Anti- PmC*fU*mUmUmAfAmGmAmCmCm sense UmCmAfAmAfUmUmCmUmCmG* mG*mU 366 Sense mC*mG*mAmGmAmAfUmUfUfGfA Formula mGmGmUmCmUmUmAmA*mA*mG I 372 Anti- mC*fU*mUmUmAfAmGmAmCmCmU sense mCmAfAmAfUmUmCmUmCmG* mG*mU
TABLE-US-00019 TABLE 6 Sense SEQ or ID Anti- Sense or Anti-Sense with NO Sense modifications (5′ to 3′) 373 Sense mU*mC*mAmGmAmUmGmGfAfGfGmAmGmGmAmUmAmU mUmCmU 389 Anti- PmA*fG*mAmAmUfAmUmCmCmUmCmCmUfCmCfAmU Sense mCmUmGmA*mG*mU 374 Sense mG*mC*mAmGmAmUfGmGfAfGfGmAmGmGmAmUmAmU mU*mC*mA 390 Anti- PmU*fG*mAmAmUfAmUmCmCmUmCmCmUfCmCfAmU Sense mCmUmGmC*mG*mU 375 Sense mU*mC*mAmGmAmUfGmGfAfGfGmAmGmGmAmUmAmU mUmCmU 391 Anti- PmA*fG*mAmAmUfAmUmCmCmUmCmCmUfCmCfAmU Sense mCmUmGmA*mG*mU 376 Sense mU*mC*mAmGmAmUfGmGfAfGfGmAmGmGmAmUmAmU mU*mC*mC 392 Anti- PmG*fG*mAmAmUfAmUmCmCmUmCmCmUfCmCfAmU Sense mCmUmGmA*mG*mU 377 Sense mU*mC*mAmGmAmUfGmGfAfGfGmAmGmGmAmUmAmU mUmCmU 393 Anti- PmA*fG*mAmAmUmAmUmCmCmUmCmCmUfCmCmAmU Sense mCmUmGmA*mG*mU 378 Sense mC*mA*mGmAmUmGfGmAfGfGfAmGmGmAmUmAmUmU mC*mU*mA 394 Anti- PmU*fA*mGmAmAfUmAmUmCmCmUmCmCfUmCfCmA Sense mUmCmUmG*mA*mG 379 Sense mA*mU*mGmGmAmGfGmAfGfGfAmUmAmUmUmCmUmG mC*mA*mA 395 Anti- PmU*fU*mGmCmAfGmAmAmUmAmUmCmCfUmCfCmU Sense mCmCmAmU*mC*mU 380 Sense mC*mC*mGmAmGmAfAmUfUfUfGmAmGmGmUmCmUmU mA*mA*mA 396 Anti- PmU*fU*mUmAmAfGmAmCmCmUmCmAmAfAmUfUmC Sense mUmCmGmG*mU*mA 381 Sense mC*mG*mAmGmAmAfUmUfUfGfAmGmGmUmCmUmUmA mA*mA*mG 397 Anti- PmC*fU*mUmUmAfAmGmAmCmCmUmCmAfAmAfUmU Sense mCmUmCmG*mG*mU 382 Sense mC*mG*mAmGmAmAfUmUfUfGfAmGmGmUmCmUmUmA mA*mA*mG 398 Anti- PmC*fU*mUmUmAfAmGmAmCmCmUmCmAfAmAfUmU Sense mCmUmCmG*mG*mU 383 Sense mG*mG*mAmGmAmAfUmUfUfGfAmGmGmUmCmUmUmA mA*mA*mA 399 Anti- PmU*fU*mUmUmAfAmGmAmCmCmUmCmAfAmAfUmU Sense mCmUmCmC*mG*mU 384 Sense mC*mG*mAmGmAmAfUmUfUfGfAmGmGmUmCmUmUmA mA*mA*mA 400 Anti- PmU*fU*mUmUmAfAmGmAmCmCmUmCmAfAmAfUmU Sense mCmUmCmG*mG*mU 385 Sense mC*mG*mAmGmAmAfUmUfUfGfAmGmGmUmCmUmUmA mAmAmG 401 Anti- PmC*fU*mUmUmAfAmGmAmCmCmUmCmAfAmAfUmU Sense mCmUmCmG*mG*mU 386 Sense mC*mG*mAmGmAmAmUmUfUfGfAmGmGmUmCmUmUmA mAmAmG 402 Anti- PmC*fU*mUmUmAfAmGmAmCmCmUmCmAfAmAfUmU Sense mCmUmCmG*mG*mU 387 Sense mC*mG*mAmGmAmAfUmUfUfGfAmGmGmUmCmUmUmA mAmAmG 403 Anti- PmC*fU*mUmUmAmAmGmAmCmCmUmCmAfAmAmUmU Sense mCmUmCmG*mG*mU 388 Sense mC*mG*mAmGmAmAmUmUfUfGfAmGmGmUmCmUmUmA mAmAmG 404 Anti- PmC*fU*mUmUmAmAmGmAmCmCmUmCmAfAmAmUmU Sense mCmUmCmG*mG*mU
TABLE-US-00020 TABLE 8 Anti- Sense Sense strand Sense Antisense SEQ sequence with SEQ strand with ID modifications ID modifications NO (5′ to 3′) NO (5′ to 3′) 361 mA*mU*mGmGmAmGf 367 [Phos]mU*fU*mGmCmA GmAfGfGfAmUmAmU fGmAmAmUmAmUmCmC mUmCmUmGmC*mA*mA fUmCfCmUmCmCmAmU* mC*mU 362 mC*mC*mGmAmGmAf 368 [Phos]mU*fU*mUmAmA AmUfUfUfGmAmGmG fGmAmCmCmUmCmAmA mUmCmUmUmA*mA*mA fAmUfUmCmUmCmGmG* mU*mA 363 mA*mU*mGmGmAmGf 369 mU*fU*mGmCmAfGmAmA GmAfGfGfAmUmAmU mUmAmUmCmCfUmCfC mUmCmUmGmC*mA*mA mUmCmCmAmU*mC*mU 364 mG*mG*mUmCmUmUf 370 mU*fC*mAmGmCfGmUmG AmAfAfGfGmCmUmC mAmGmCmCmUfUmUfA mAmCmGmCmU*mG*mA mAmGmAmCmC*mU*mC 365 mA*mU*mGmGmAmGf 371 mC*fU*mGmCmAfGmAmA GmAfGfGfAmUmAmU mUmAmUmCmCfUmCfC mUmCmUmGmC*mA*mG mUmCmCmAmU*mC*mU 366 mC*mG*mAmGmAmAf 372 mC*fU*mUmUmAfAmGmA UmUfUfGfAmGmGmU mCmCmUmCmAfAmAfU mCmUmUmAmA*mA*mG mUmCmUmCmG*mG*mU
TABLE-US-00021 TABLE 11 Sense Anti- SEQ Sense ID SEQ Row Sense Sequence NO Anti-Sense Sequence ID NO 1A GGAGCUGACCCUGCUCUUCCA 124 UGGAAGAGCAGGGUCAGCUCCUC 231 2B CCACGGAGGGACGGCUGACAA 125 UUGUCAGCCGUCCCUCCGUGGUC 232 3C ACGGCUGACAAAGGCCAGGAA 126 UUCCUGGCCUUUGUCAGCCGUCC 233 4D GGCUGACAAAGGCCAGGAACA 127 UGUUCCUGGCCUUUGUCAGCCGU 234 5E CAGGAACAGCCUGGGUCUCUA 128 UAGAGACCCAGGCUGUUCCUGGC 235 6F CAGGAACAGCCUGGGUCUCUC 129 GAGAGACCCAGGCUGUUCCUGGC 236 7G AGGAACAGCCUGGGUCUCUAU 130 AUAGAGACCCAGGCUGUUCCUGG 237 8H AGGAACAGCCUGGGUCUCUAA 131 UUAGAGACCCAGGCUGUUCCUGG 238 9I GCCUGGGUCUCUAUGGCCGCA 132 UGCGGCCAUAGAGACCCAGGCUG 239 10J CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGGC 240 11K CUUGGUCUCUAUGGCCGCACA 134 UGUGCGGCCAUAGAGACCAAGGC 241 12L CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGUG 242 13M CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGGC 243 14N CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGUU 244 15O CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGAG 245 16P CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGAU 246 17Q CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGGC 247 18R CUGGGUCUCUAUGGCCGCACA 133 UGUGCGGCCAUAGAGACCCAGAA 248 19S CUAGGUCUCUAUGGCCGCACA 135 UGUGCGGCCAUAGAGACCCAGGC 249 20T CUGGGUCUCUAUGGCCGCACA 133 CGCGCGGCCACAGAGACCCAGCG 250 21U CAAGGUCUCUAUGGCCGCACA 136 CGCGCGGCCACAGAGACCCCGGC 251 22V CUGGGUCUCUAUGGCCGCACA 133 CGCGCGGCCACAGAGACCCAGCA 252 23W CUGGGUCUCUAUGGCCGCACA 133 CGCGCGGCCACAGAGACCCAGAC 253 24X CUGGGUCUCUAUGGCCGCACA 133 CGCGCGGCCACAGAGACCCAGCC 254 25Y CCCGGUCUCUAUGGCCGCACA 137 CGCGCGGCCACAGAGACCGGGGC 255 26Z CUGGGUCUCUAUGGCCGCACA 133 CGCGCGGCCACAGAGACCCAGCA 256 27AA CAUGGUCUCUAUGGCCGCACA 138 CGCGCGGCCACAGAGACCACGGC 257 28BB CAGGGUCUCUAUGGCCGCACA 139 CGCGCGGCCACAGAGACCCCGGC 258 29CC CGAGGUCUCUAUGGCCGCACA 140 CGCGCGGCCACAGAGACCCCGGC 259 30DD CGGGGUCUCUAUGGCCGCACA 141 CGCGCGGCCACAGAGACCCCGGC 260 31EE CGAGGUCUCUAUGGCCGCACA 142 CGCGCGGCCACAGAGACCCCGGC 261 32FF CCGGGAUGCAGCCCAGGAACU 143 AGCCCCCGGGCCGCACCCCGGCC 262 33GG CGGGAUGCAGCCCAGGAACUU 144 AAGCCCCCGGGCCGCACCCCGGC 263 34HH AGCCCAGGAACUUCGGGCAAA 145 CCCGCCCGAAGCCCCCGGGCCGC 264 35II GCCCAGGAACUUCGGGCAAGA 146 UCUUGCCCGAAGUUCCUGGGCUG 265 36JJ CAGGAACUUCGGGCAAGCCUA 147 UAGGCUUGCCCGAAGUUCCUGGG 266 37KK AGGAACUUCGGGCAAGCCUGA 148 UCAGGCUUGCCCGAAGUUCCUGG 267 38LL AACUUCGGGCAAGCCUGUUGA 149 UCAACAGGCUUGCCCGAAGUUCC 268 39MM ACUUCGGGCAAGCCUGUUGGA 150 UCCAACAGGCUUGCCCGAAGUUC 269 40NN UUCGGGCAAGCCUGUUGGAGA 151 UCUCCAACAGGCUUGCCCGAAGU 270 41OO GGCAAGCCUGUUGGAGACUCA 152 UGAGUCUCCAACAGGCUUGCCCG 271 42PP CAAGCCUGUUGGAGACUCAGA 153 UCUGAGUCUCCAACAGGCUUGCC 272 43QQ AAGCCUGUUGGAGACUCAGAU 154 AUCUGAGUCUCCAACAGGCUUGC 273 44RR CCUGUUGGAGACUCAGAUGGA 155 UCCAUCUGAGUCUCCAACAGGCU 274 45SS CUGUUGGAGACUCAGAUGGAA 156 UUCCAUCUGAGUCUCCAACAGGC 275 46TT GGAGACUCAGAUGGAGGAGGA 157 UCCUCCUCCAUCUGAGUCUCCAA 276 47UU GAGACUCAGAUGGAGGAGGAU 158 AUCCUCCUCCAUCUGAGUCUCCA 277 48VV AGACUCAGAUGGAGGAGGAUA 159 UAUCCUCCUCCAUCUGAGUCUCC 278 49WW GACUCAGAUGGAGGAGGAUAU 160 AUAUCCUCCUCCAUCUGAGUCUC 279 50XX ACUCAGAUGGAGGAGGAUAUU 161 AAUAUCCUCCUCCAUCUGAGUCU 280 51YY ACUCAGAUGGAGGAGGAUAUA 162 UAUAUCCUCCUCCAUCUGAGUCU 281 52ZZ UCAGAUGGAGGAGGAUAUUCU 163 AGAAUAUCCUCCUCCAUCUGAGU 282 54A3 GCAGAUGGAGGAGGAUAUUCA 164 UGAAUAUCCUCCUCCAUCUGCGU 283 56B3 UCAGAUGGAGGAGGAUAUUCA 165 UGAAUAUCCUCCUCCAUCUGAGU 284 57C3 UCAGAUGGAGGAGGAUAUUCC 166 GGAAUAUCCUCCUCCAUCUGAGU 285 62D3 CAGAUGGAGGAGGAUAUUCUG 167 CAGAAUAUCCUCCUCCAUCUGAG 286 63E3 CAGAUGGAGGAGGAUAUUCUA 168 UAGAAUAUCCUCCUCCAUCUGAG 287 64F3 AUGGAGGAGGAUAUUCUGCAG 169 CUGCAGAAUAUCCUCCUCCAUCU 288 65G3 AUGGAGGAGGAUAUUCUGCAA 170 UUGCAGAAUAUCCUCCUCCAUCU 289 69H3 AUGGAGGAGGCUAUUCUGCAG 171 CUGCAGAAUAUCCUCCUCCAUCU 288 74I3 AUGGAGGAGGUUAUUCUGCAG 172 CUGCAGAAUAUCCUCCUCCAUCU 288 80J3 AUGGAGGAGGAUAUUCUGCAG 169 CUGCAGAAUAUCCUCCUCCAUCUTTT 290 81K3 AUGGAGGAGGGUAUUCUGCAG 173 CUGCAGAAUAUCCUCCUCCAUCU 288 82L3 AUGGAGGAGGAUAUUCUGCAG 169 CUGCAGAAUAUCCUCCUCCAUCUTT 291 86M3 AGAUGGAGGAGGAUAUUCUGCAG 174 CUGCAGAAUAUCCUCCUCCAUCU 288 89N3 CAGAUGGAGGAGGAUAUUCUGCAG 175 CUGCAGAAUAUCCUCCUCCAUCU 288 90O3 CCAGAUGGAGGAGGAUAUUCUGCAG 176 CUGCAGAAUAUCCUCCUCCAUCU 288 91P3 GGAGGAGGAUAUUCUGCAGCU 177 AGCUGCAGAAUAUCCUCCUCCAU 292 92Q3 GCCCAGGCACAGAAGGUGCUA 178 UAGCACCUUCUGUGCCUGGGCCA 293 93R3 AGCGGCUAGAAGUCCAGCUGA 179 UCAGCUGGACUUCUAGCCGCUGC 294 94S3 GCGGCUAGAAGUCCAGCUGAA 180 UUCAGCUGGACUUCUAGCCGCUG 295 95T3 CGGCUAGAAGUCCAGCUGAGA 181 UCUCAGCUGGACUUCUAGCCGCU 296 96U3 CCGAGAAUUUGAGGUCUUAAA 182 UUUAAGACCUCAAAUUCUCGGUA 297 98V3 CGAGAAUUUGAGGUCUUAAAG 183 CUUUAAGACCUCAAAUUCUCGGU 298 99W3 GGAGAAUUUGAGGUCUUAAAA 184 UUUUAAGACCUCAAAUUCUCCGU 299 100X3 CGAGAAUUUGAGGUCUUAAAA 185 UUUUAAGACCUCAAAUUCUCGGU 300 109Y3 AGAAUUUGAGGUCUUAAAGGA 186 UCCUUUAAGACCUCAAAUUCUCG 301 110Z3 GAAUUUGAGGUCUUAAAGGCA 187 UGCCUUUAAGACCUCAAAUUCUC 302 111a4 AAUUUGAGGUCUUAAAGGCUA 188 UAGCCUUUAAGACCUCAAAUUCU 303 112b4 AUUUGAGGUCUUAAAGGCUCA 189 UGAGCCUUUAAGACCUCAAAUUC 304 113c4 AUCUGAGGUCUUAAAGGCUCA 190 UGAGCCUUUAAGACCUCAGAUUC 305 114d4 ACCUGAGGUCUUAAAGGCUCA 191 UGAGCCUUUAAGACCUCAGGUUC 306 115e4 UUUGAGGUCUUAAAGGCUCAA 192 UUGAGCCUUUAAGACCUCAAAUU 307 116f4 GAGGUCUUAAAGGCUCACGCU 193 AGCGUGAGCCUUUAAGACCUCAA 308 117g4 GAGGUCUUAAAGGCUCACGCA 194 UGCGUGAGCCUUUAAGACCUCAA 309 118h4 GGUCUUAAAGGCUCACGCUGA 195 UCAGCGUGAGCCUUUAAGACCUC 310 124i4 UGUCUUAAAGGCUCACGCUGC 196 GCAGCGUGAGCCUUUAAGACAUC 311 126j4 GUCUUAAAGGCUCACGCUGAA 197 UUCAGCGUGAGCCUUUAAGACCU 312 127k4 UCUUAAAGGCUCACGCUGACA 198 UGUCAGCGUGAGCCUUUAAGACC 313 128l4 CCGAAAGGCUCACGCUGACAA 199 UUGUCAGCGUGAGCCUUUCGGAC 314 129m4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGAA 315 130n4 CACAAAGGCUCACGCUGACAA 201 UUGUCAGCGUGAGCCUUUGUGAC 316 131o4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGGU 317 132p4 CCUAAAGGCUCACGCUGACAA 202 UUGUCAGCGUGAGCCUUUAGGAC 318 133q4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGCA 319 134r4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGAG 320 135s4 CUGAAAGGCUCACGCUGACAA 203 UUGUCAGCGUGAGCCUUUCAGAC 321 136t4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGGG 322 137u4 CUCAAAGGCUCACGCUGACAA 204 UUGUCAGCGUGAGCCUUUGAGAC 323 138v4 CCAAAAGGCUCACGCUGACAA 205 UUGUCAGCGUGAGCCUUUUGGAC 324 139w4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGUA 325 140x4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGGG 326 141y4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGGU 327 142z4 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGGA 328 143A5 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGUG 329 144B5 CAAAAAGGCUCACGCUGACAA 206 UUGUCAGCGUGAGCCUUUUUGAC 330 145C5 CGCAAAGGCUCACGCUGACAA 207 UUGUCAGCGUGAGCCUUUGCGAC 331 146D5 CGAAAAGGCUCACGCUGACAA 208 UUGUCAGCGUGAGCCUUUUGGAC 332 147E5 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGGG 333 148F5 CAGAAAGGCUCACGCUGACAA 209 UUGUCAGCGUGAGCCUUUGUGAC 334 149G5 CCCAAAGGCUCACGCUGACAA 210 UUGUCAGCGUGAGCCUUUGGGAC 335 150H5 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGAG 336 151I5 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGCC 337 152J5 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGAU 338 153K5 CGUAAAGGCUCACGCUGACAA 211 UUGUCAGCGUGAGCCUUUACGAC 339 154L5 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGUC 340 155M5 CUUAAAGGCUCACGCUGACAA 200 UUGUCAGCGUGAGCCUUUAAGUU 341 156N5 CGGAAAGGCUCACGCUGACAA 212 UUGUCAGCGUGAGCCUUUCCGAC 342 157O5 UUAAAGGCUCACGCUGACAAA 213 UUUGUCAGCGUGAGCCUUUAAGA 343 158P5 AGGCUCACGCUGACAAGCAGA 214 UCUGCUUGUCAGCGUGAGCCUUU 344 159Q5 UGCAGCGGCAGAGGCGGGAGA 215 UCUCCCGCCUCUGCCGCUGCACG 345 160R5 GCGGCAGAGGCGGGAGAUGGU 216 ACCAUCUCCCGCCUCUGCCGCUG 346 161S5 GAGGCGGGAGAUGGUGGCACA 217 UGUGCCACCAUCUCCCGCCUCUG 347 162T5 GCGGGAGAUGGUGGCACAGCA 218 UGCUGUGCCACCAUCUCCCGCCU 348 163U5 GUGGCACAGCAGCAUCGGCUA 219 UAGCCGAUGCUGCUGUGCCACCA 349 164V5 CAGCAGCAUCGGCUGCGACAA 220 UUGUCGCAGCCGAUGCUGCUGUG 350 165W5 AGCAGCAUCGGCUGCGACAGA 221 UCUGUCGCAGCCGAUGCUGCUGU 351 166X5 GCAGCAUCGGCUGCGACAGAA 222 UUCUGUCGCAGCCGAUGCUGCUG 352 167Y5 CAGCAUCGGCUGCGACAGAUA 223 UAUCUGUCGCAGCCGAUGCUGCU 353 168Z5 AGCAUCGGCUGCGACAGAUCA 224 UGAUCUGUCGCAGCCGAUGCUGC 354 169a6 GCAUCGGCUGCGACAGAUCCA 225 UGGAUCUGUCGCAGCCGAUGCUG 355 170b6 CAUCGGCUGCGACAGAUCCAA 226 UUGGAUCUGUCGCAGCCGAUGCU 356 171c6 UCGGCUGCGACAGAUCCAGGA 227 UCCUGGAUCUGUCGCAGCCGAUG 357 172d6 GGCUGCGACAGAUCCAGGAGA 228 UCUCCUGGAUCUGUCGCAGCCGA 358 173e6 GCUGCGACAGAUCCAGGAGAA 229 UUCUCCUGGAUCUGUCGCAGCCG 359 174e7 CUGCGACAGAUCCAGGAGAGA 230 UCUCUCCUGGAUCUGUCGCAGCC 360