METHODS FOR COLON CANCER DETECTION AND TREATMENT

Abstract

The present invention is directed to methods for detecting a colon cancer, methods for determining whether a colon cancer is stable or progressive, methods for determining a risk for disease relapse, and methods for determining a response by a subject having a colon cancer to a therapy.

Claims

1. A method for detecting a colon cancer in a subject in need thereof, comprising: determining the expression level of at least 14 biomarkers from a test sample from the subject by contacting the test sample with a plurality of agents specific to detect the expression of the at least 14 biomarkers, wherein the 14 biomarkers comprise ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, UMPS, and a housekeeping gene; normalizing the expression level of each of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS to the expression level of the housekeeping gene, thereby obtaining a normalized expression level of each of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS; inputting each normalized expression level into an algorithm to generate a score; comparing the score with a predetermined cutoff value; and producing a report, wherein the report identifies the presence of a colon cancer in the subject when the score is equal to or greater than the predetermined cutoff value or identifies the absence of a colon cancer in the subject when the score is less than the predetermined cutoff value.

2. A method for determining whether a colon cancer in a subject is stable or progressive, the method comprising: determining the expression level of at least 14 biomarkers from a test sample from the subject by contacting the test sample with a plurality of agents specific to detect the expression of the at least 14 biomarkers, wherein the 14 biomarkers comprise ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, UMPS, and a housekeeping gene; normalizing the expression level of each of ADM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS to the expression level of the housekeeping gene, thereby obtaining a normalized expression level of each of ADM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS; inputting each normalized expression level into an algorithm to generate a score; comparing the score with a predetermined cutoff value; and producing a report, wherein the report identifies that the colon cancer is progressive when the score is equal to or greater than the predetermined cutoff value or identifies that the colon cancer is stable when the score is less than the predetermined cutoff value.

3.-31. (canceled)

32. A method of treating colon cancer in a subject comprising: determining the expression level of at least 14 biomarkers from a test sample from a subject by contacting the test sample with a plurality of agents specific to detect the expression of the at least 14 biomarkers, wherein the 14 biomarkers comprise ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, UMPS, and a housekeeping gene, wherein the housekeeping gene is MORF4L1; normalizing the expression level of each of ADM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS to the expression level of the housekeeping gene, thereby obtaining a normalized expression level of each of ADM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS; inputting each normalized expression level into an algorithm to generate a score, wherein the algorithm is a product of a model of colon cancer disease derived using the XGB algorithm; comparing the score with a predetermined cutoff value; determining that the score is equal to or greater than the predetermined cutoff value, thereby identifying the subject as having colon cancer; and administering to the subject identified as having colon cancer a therapy, wherein the therapy comprises anti-cancer therapy, chemotherapy, targeted drug therapy, radiation therapy, immunotherapy or any combination thereof.

33. The method of claim 32, wherein the predetermined cutoff value is at least 50% on a scale of 0-100%.

34. The method of claim 32, wherein the predetermined cutoff value is at least 60% on a scale of 0-100%.

35. The method of claim 32, wherein the predetermined cutoff value has a sensitivity of identifying the subject as having colon cancer that is greater than 85%.

36. The method of claim 32, wherein the predetermined cutoff value has a specificity of identifying the subject as having colon cancer that is greater than 75%.

37. The method of claim 32, wherein at least one of the at least 14 biomarkers is RNA, cDNA or protein.

38. The method of claim 37, wherein when the biomarker is RNA, the RNA is reverse transcribed to produce cDNA, and the produced cDNA expression level is detected.

39. The method of claim 32, wherein the predetermined cutoff value is derived from a plurality of reference samples obtained from subjects not having or not diagnosed with a colon cancer.

40. The method of claim 32, wherein therapy comprises chemotherapy, wherein the chemotherapy comprises FOLFOX, FOLFIRI, a combination of 5-FU and leucovorin, capecitabine, irinotecan, CapeOx or any combination thereof.

41. The method of claim 32, wherein when the therapy comprises targeted drug therapy, wherein the targeted drug therapy comprises bevacizumab, cetuximab, panitumumab, regorafenib, a combination of trifluridine and tipiracil, an EGFR TKI inhibitor or any combination thereof.

42. The method of claim 32, wherein when the therapy comprises anti-cancer therapy, wherein the anticancer therapy comprises anti-colon cancer therapy.

43. The method of claim 32, wherein when the therapy comprises immunotherapy, wherein the immunotherapy comprises pembrolizumab, nivolumab or a combination of pembrolizumab and nivolumab.

Description

BRIEF DESCRIPTION OF THE DRAWINGS

[0045] FIGS. 1A-1B are graphs showing normalized gene expression of the 13 gene signature in colon mucosa (FIG. 1A) and cell lines (FIG. 1B). Gene expression was significantly (p<0.0001) elevated in colon cancer samples (n=7) compared to matched normal mucosa (n=7). Levels were ˜20-fold elevated in colon cancer tumor tissue than in normal mucosa. All genes were expressed in three different colon cancer cell lines. Levels were −1000× elevated compared to normal mucosa. Horizontal lines identify median normalized expression of the 13 genes.

[0046] FIGS. 2A-2B are graphs showing receiver operator curve analysis of the test set (FIG. 2A) and independent set (FIG. 2B). Each cohort included 136 cancers and 60 controls. The AUROC in the test set was 0.9 and the Youden J index was 0.71. In the independent set the AUROC was 0.86 with a Youden index of 0.6. Z-statistics ranged 11.2-15.6 and were highly significant (p<0.0001). The sensitivity and specificity of the test ranged 85-87.5% and 75-83%, respectively.

[0047] FIGS. 3A-3B are graphs showing that gene expression in the entire cohort (controls: n=120; colon cancer cases: n=272) identified levels were significantly (p<0.0001) elevated in cases (62.7±14%) versus controls (34.6±18%) (FIG. 3A). The AUROC was 0.88, p<0.0001 (FIG. 3B). Horizontal lines identify median expression of the normalized 13 gene signature (ColoTest).

[0048] FIGS. 4A-4B are graphs showing decision curve analysis (FIG. 4A) and risk analysis (FIG. 4B) for the ColoTest. This exhibited >50% standardized predictive benefit up to a risk threshold of 80%. The probit risk assessment plot identified a ColoTest score >50% was 75% accurate for predicting colon cancer in a blood sample. This was increased to >80% at a ColoTest score >60%.

[0049] FIG. 5 is a graph showing the effect of surgery on the ColoTest. Levels prior to surgery are elevated (84±6%). In those with no evidence of disease (NED) levels were reduced by surgery to 14±9% (*p=0.0001). In those with disease (D) remaining after surgery, levels remained similar to pre-surgical values (74±4%).

[0050] FIGS. 6A-6C are graphs showing ColoTest scores in stable and progressive disease. Test scores were not significantly different between those identified as stable and those with progressive disease at the time of assessment (FIG. 6A). Of the 17 with stable disease, 12 exhibited disease progression in the 3 month follow-up. Levels in those who truly had demonstrable stable disease were low (16±10%) (FIG. 6B). In those who did progress in the 3 months levels were not different to those that had progressive disease (73±16% vs. 68±25%). The AUROC for differentiating stable from progressing/progressive disease was 0.97, p<0.0001 (FIG. 6C).

[0051] FIG. 7 is a graph showing comparison of AUROC between the ColoTest and CEA for differentiating stable from progressive disease. The ColoTest was significantly more sensitive than CEA (difference in AUC: 0.18, z-statistic: 2.1, p=0.03).

[0052] FIG. 8 is a graph showing the effect of treatment on the ColoTest. Levels prior to treatment are elevated (82±9%). In those who responded to therapy with disease stabilization, levels were reduced to 14±7% (*p<0.0001). In those that exhibited disease progression because of treatment failure, levels were elevated (69±21%).

DETAILED DESCRIPTION OF THE INVENTION

[0053] The details of the invention are set forth in the accompanying description below. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, illustrative methods and materials are now described. Other features, objects, and advantages of the invention will be apparent from the description and from the claims. In the specification and the appended claims, the singular forms also include the plural unless the context clearly dictates otherwise. Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. All patents and publications cited in this specification are incorporated herein by reference in their entireties.

[0054] Colon cancer is cancer of the large intestine (colon). Symptoms of colon cancer include, but are not limited to: (a) a change in bowel habits, (b) rectal bleeding or blood in the stool, (c) persistent abdominal discomfort, such as cramps, gas or pain, (d) a feeling that the bowel doesn't empty completely, (e) weakness or fatigue, and (f) unexplained weight loss.

[0055] Described herein are methods to quantitate (score) the circulating colon cancer molecular signature with high sensitivity and specificity for purposes including, but not limited to, detecting a colon cancer, determining whether a colon cancer is stable or progressive, determining the completeness of surgery, and evaluating the response to a colon cancer therapy. Specifically, the present invention is based on the discovery that the expression levels of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS, normalized by the expression level of a housekeeping gene such as MORF4L1, are elevated in subjects having colon cancers as compared to healthy subjects.

[0056] Accordingly, the present disclosure provides a method for detecting a colon cancer in a subject in need thereof, the method comprising: (a) determining the expression level of at least 14 biomarkers from a test sample from the subject by contacting the test sample with a plurality of agents specific to detect the expression of the at least 14 biomarkers, wherein the 14 biomarkers comprise ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, UMPS, and a housekeeping gene; (b) normalizing the expression level of each of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS to the expression level of the housekeeping gene, thereby obtaining a normalized expression level of each of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS; (c) inputting each normalized expression level into an algorithm to generate a score; (d) comparing the score with a first predetermined cutoff value; and (e) identifying the presence of a colon cancer in the subject when the score is equal to or greater than the predetermined cutoff value or identifying the absence of a colon cancer in the subject when the score is less than the predetermined cutoff value.

[0057] In some aspects of the preceding method, step (e) can comprise producing a report, wherein the report identifies the presence of a colon cancer in the subject when the score is equal to or greater than the first predetermined cutoff value or identifies the absence of a colon cancer in the subject when the score is less than the first predetermined cutoff value.

[0058] In some aspects, the preceding method can further comprise administering to the subject a first therapy. The preceding method can further comprise administering to the subject a first therapy when the score is equal to or greater than the predetermined cutoff.

[0059] The present disclosure also provides a method for determining whether a colon cancer in a subject is stable or progressive, the method comprising: (a) determining the expression level of at least 14 biomarkers from a test sample from the subject by contacting the test sample with a plurality of agents specific to detect the expression of the at least 14 biomarkers, wherein the 14 biomarkers comprise ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, UMPS, and a housekeeping gene; (b) normalizing the expression level of each of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS to the expression level of the housekeeping gene, thereby obtaining a normalized expression level of each of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS; (c) inputting each normalized expression level into an algorithm to generate a score; (d) comparing the score with a second predetermined cutoff value; and (e) identifying that the colon cancer in the subject is progressive when the score is equal to or greater than the predetermined cutoff value or identifying that the colon cancer in the subject is stable when the score is less than the predetermined cutoff value.

[0060] In some aspects of the preceding method, step (e) can comprise producing a report, wherein the report identifies that the colon cancer is progressive when the score is equal to or greater than the second predetermined cutoff value or identifies that the colon cancer is stable when the score is less than the second predetermined cutoff value.

[0061] In some aspects, the preceding method can further comprise administering to the subject a first therapy. The preceding method can further comprise administering to the subject a first therapy when the score is equal to or greater than the predetermined cutoff.

[0062] In some aspects, the method further comprises treating the subject with a progressive colon cancer with surgery, chemotherapy, targeted drug therapy, radiation therapy, immunotherapy, or a combination thereof.

[0063] The present disclosure also provides a method for determining the completeness of surgery in a subject having a colon cancer, the method comprising: (a) determining the expression level of at least 14 biomarkers from a test sample from the subject after the surgery by contacting the test sample with a plurality of agents specific to detect the expression of the at least 14 biomarkers, wherein the 14 biomarkers comprise ADM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, UMPS, and a housekeeping gene; (b) normalizing the expression level of each of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS to the expression level of the housekeeping gene, thereby obtaining a normalized expression level of each of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS; (c) inputting each normalized expression level into an algorithm to generate a score; (d) comparing the score with a first predetermined cutoff value; and (e) identifying that the colon cancer in the subject is not completely removed when the score is equal to or greater than the predetermined cutoff value or identifying that the colon cancer in the subject is completely removed when the score is less than the predetermined cutoff value.

[0064] In some aspects of the preceding method, step (e) can comprise producing a report, wherein the report identifies that the colon cancer is not completely removed when the score is equal to or greater than the first predetermined cutoff value or identifies that the colon cancer is completely removed when the score is less than the first predetermined cutoff value.

[0065] In some aspects, the preceding method can further comprise administering to the subject a first therapy. The preceding method can further comprise administering to the subject a first therapy when the score is equal to or greater than the predetermined cutoff.

[0066] The present disclosure also provides a method comprising: (a) determining the expression level of at least 14 biomarkers from a test sample from a subject by contacting the test sample with a plurality of agents specific to detect the expression of the at least 14 biomarkers, wherein the 14 biomarkers comprise ADM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, UMPS, and a housekeeping gene; (b) normalizing the expression level of each of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS to the expression level of the housekeeping gene, thereby obtaining a normalized expression level of each of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS; (c) inputting each normalized expression level into an algorithm to generate a score; (d) comparing the score with a predetermined cutoff value; and (e) administering a first therapy to the subject when the score is equal to or greater than the predetermined cutoff value.

[0067] The response of a subject having a colon cancer to a therapy can also be evaluated by comparing the scores determined by the same algorithm at different time points of the therapy. For example, the first time point can be prior to or after the administration of the therapy to the subject; the second time point is after the first time point and after the administration of the therapy to the subject. A first score is generated at the first time point, and a second score is generated at the second time point. When the second score is significantly decreased as compared to the first score, the subject is considered to be responsive to the therapy.

[0068] Accordingly, the present disclosure provides a method for evaluating the response of a subject having a colon cancer to a first therapy, the method comprising: (1) at a first time point: (a) determining the expression level of at least 14 biomarkers from a first test sample from the subject by contacting the first test sample with a plurality of agents specific to detect the expression of the at least 14 biomarkers, wherein the 14 biomarkers comprise ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, UMPS, and a housekeeping gene; (b) normalizing the expression level of each of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS to the expression level of the housekeeping gene, thereby obtaining a normalized expression level of each of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS; (c) inputting each normalized expression level into an algorithm to generate a first score; (2) at a second time point, wherein the second time point is after the first time point and after the administration of the therapy to the subject: (a) determining the expression level of at least 14 biomarkers from a second test sample from the subject by contacting the second test sample with a plurality of agents specific to detect the expression of the at least 14 biomarkers, wherein the 14 biomarkers comprise ADM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, UMPS, and the housekeeping gene; (b) normalizing the expression level of each of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS to the expression level of the housekeeping gene, thereby obtaining a normalized expression level of each of ADRM1, CDK4, COMT, DHCR7, HMOX2, MCM2, PDXK, POP7, S100P, SNRPA, SORD, STOML2, and UMPS; (c) inputting each normalized expression level into the algorithm to generate a second score; (3) comparing the first score with the second score; and (4) identifying that the subject is responsive to the first therapy when the second score is significantly decreased as compared to the first score or identifying that the subject is not responsive to the first therapy when the second score is not significantly decreased as compared to the first score.

[0069] In some aspects of the preceding method, step (4) can comprise producing a report, wherein the report identifies that the subject is responsive to the first therapy when the second score is significantly decreased as compared to the first score or identifies that the subject is not responsive to the first therapy when the second score is not significantly decreased as compared to the first score.

[0070] In some aspects of the preceding method, the second score is significantly decreased as compared to the first score when the second score is at least about 10% less than the first score, or at least about 20% less than the first score, or at least about 25% less than the first score, at least about 40% less than the first score, at least about 50% less than the first score, or at least about 60% less than the first score, or at least about 70% less than the first score, or at least about 75% less than the first score, or at least about 80% less than the first score, or at least about 90% less than the first score, or at least about 95% less than the first score or at least about 95% less than the first score. In some aspects, when the second score is not significantly decreased as compared to the first score, the subject is considered to be not responsive to the therapy.

[0071] In some aspects of the preceding method, a first time point can be prior to the administration of a first therapy to the subject. A first time point can be after the administration of a first therapy to the subject.

[0072] In some aspects, the preceding method can further comprise continuing to administer the first therapy to the subject when the second score is significantly decreased as compared to the first score.

[0073] In some aspects, the preceding method can further comprise discontinuing administration of the first therapy to the subject when the second score is not significantly decreased as compared to the first score.

[0074] In some aspects, the preceding method can further comprise administering a second therapy to the subject when the second score is not significantly decreased as compared to the first score.

[0075] In some aspects of the methods of the present disclosure, a predetermined cutoff value can be about 50% on a scale of 0-100%. A predetermined cutoff value can be about 60% on a scale of 0-100%. A predetermine cutoff value can be about 10%, or about 20%, or about 30%, or about 40%, or about 70%, or about 80%, or about 90% on a scale of 0-100%.

[0076] In some aspects of the methods of the present disclosure, a test sample can be any biological fluid obtained from the subject. A test sample can be blood, serum, plasma, neoplastic tissue or any combination thereof. In some aspects, the test sample is blood. In some aspects, the test sample is serum. In some aspects, the test sample is plasma.

[0077] In some aspects of the methods of the present disclosure, a housekeeping gene can comprise, but is not limited to, MRPL19, PSMC4, SF3A1, PUM1, ACTB, GAPD, GUSB, RPLP0, TFRC, MORF4L1, 18S, PPIA, PGK1, RPL13A, B2M, YWHAZ, SDHA, and HPRT1. In some aspects, the housekeeping gene is MORF4L1.

[0078] The methods of the present disclosure can have a sensitivity of at least about 50%, or at least about 60%, or at least about 70%, or at least about 75%, or at least about 80%, or at least about 85%, or at least about 90%, or at least about 95%, or at least about 99%. The methods of the present disclosure can have a sensitivity of greater than about 50%, or greater than about 60%, or greater than about 70%, or greater than about 75%, or greater than about 80%, or greater than about 85%, or greater than about 90%, or greater than about 95%, or greater than about 99%.

[0079] The methods of the present disclosure can have a specificity of at least about 50%, or at least about 60%, or at least about 70%, or at least about 75%, or at least about 80%, or at least about 85%, or at least about 90%, or at least about 95%, or at least about 99%. The methods of the present disclosure can have a specificity of greater than about 50%, or greater than about 60%, or greater than about 70%, or greater than about 75%, or greater than about 80%, or greater than about 85%, or greater than about 90%, or greater than about 95%, or greater than about 99%.

[0080] The methods of the present disclosure can have an accuracy of at least about 50%, or at least about 60%, or at least about 70%, or at least about 75%, or at least about 80%, or at least about 85%, or at least about 90%, or at least about 95%, or at least about 99%. The methods of the present disclosure can have an accuracy of greater than about 50%, or greater than about 60%, or greater than about 70%, or greater than about 75%, or greater than about 80%, or greater than about 85%, or greater than about 90%, or greater than about 95%, or greater than about 99%.

[0081] In some aspects of the methods of the present disclosure, a predetermined cutoff value can be derived from a plurality of reference samples obtained from subjects not having or not diagnosed with a neoplastic disease. In some aspects, the neoplastic disease can be colon cancer.

[0082] The plurality of reference samples can comprise about 2-500, 2-200, 10-100, or 20-80 reference samples. Each reference sample produces a score using the algorithm, and the first predetermined cutoff value can be an arithmetic mean of these scores. Each reference sample can be blood, serum, plasma, or non-neoplastic tissue. In some aspects, each reference sample is blood. In some aspects, each reference sample is of the same type as the test sample.

[0083] Each of the biomarkers disclosed herein may have one or more transcript variants. The methods disclosed herein can measure the expression level of any one of the transcript variants for each biomarker.

[0084] The expression level can be measured in a number of ways, including, but not limited to: measuring the mRNA encoded by the selected genes; measuring the amount of protein encoded by the selected genes; and measuring the activity of the protein encoded by the selected genes.

[0085] In some aspects of the methods of the present disclosure, a biomarker can be RNA, cDNA, protein or any combination thereof. When the biomarker is RNA, the RNA can be reverse transcribed to produce cDNA (such as by RT-PCR), and the produced cDNA expression level can be detected. The expression level of a biomarker can be detected by forming a complex between the biomarker and a labeled probe or primer. When the biomarker is RNA or cDNA, the RNA or cDNA can be detected by forming a complex between the RNA or cDNA and a labeled nucleic acid probe or primer. The complex between the RNA or cDNA and the labeled nucleic acid probe or primer can be a hybridization complex.

[0086] In some aspects of the methods of the present disclosure, gene expression can be detected by microarray analysis. Differential gene expression can also be identified, or confirmed using the microarray technique. Thus, the expression profile biomarkers can be measured in either fresh or fixed tissue, using microarray technology. In this method, polynucleotide sequences of interest (including cDNAs and oligonucleotides) are plated, or arrayed, on a microchip substrate. The arrayed sequences are then hybridized with specific DNA probes from cells or tissues of interest. The source of mRNA typically is total RNA isolated from a biological sample, and corresponding normal tissues or cell lines may be used to determine differential expression.

[0087] In some aspects of microarray techniques, PCR amplified inserts of cDNA clones are applied to a substrate in a dense array. In some aspects, at least 10,000 nucleotide sequences are applied to the substrate. The microarrayed genes, immobilized on the microchip at 10,000 elements each, are suitable for hybridization under stringent conditions. Fluorescently labeled cDNA probes may be generated through incorporation of fluorescent nucleotides by reverse transcription of RNA extracted from tissues of interest. Labeled cDNA probes applied to the chip hybridize with specificity to each spot of DNA on the array. After stringent washing to remove non-specifically bound probes, the microarray chip is scanned by a device such as, confocal laser microscopy or by another detection method, such as a CCD camera. Quantitation of hybridization of each arrayed element allows for assessment of corresponding mRNA abundance. With dual color fluorescence, separately labeled cDNA probes generated from two sources of RNA are hybridized pair-wise to the array. The relative abundance of the transcripts from the two sources corresponding to each specified gene is thus determined simultaneously. Microarray analysis can be performed by commercially available equipment, following manufacturer's protocols.

[0088] In some aspects of the methods of the present disclosure, the biomarkers can be detected in a biological sample using qRT-PCR. The first step in gene expression profiling by RT-PCR is extracting RNA from a biological sample followed by the reverse transcription of the RNA template into cDNA and amplification by a PCR reaction. The reverse transcription reaction step is generally primed using specific primers, random hexamers, or oligo-dT primers, depending on the goal of expression profiling. The two commonly used reverse transcriptases are avilo myeloblastosis virus reverse transcriptase (AMV-RT) and Moloney murine leukemia virus reverse transcriptase (MLV-RT).

[0089] In some aspects of the methods of the present disclosure, when the biomarker is a protein, the protein can be detected by forming a complex between the protein and a labeled antibody. The label can be any label for example a fluorescent label, chemiluminescence label, radioactive label, etc. Exemplary methods for protein detection include, but are not limited to, enzyme immunoassay (EIA), radioimmunoassay (MA), Western blot analysis and enzyme linked immunoabsorbant assay (ELISA). For example, the biomarker can be detected in an ELISA, in which the biomarker antibody is bound to a solid phase and an enzyme-antibody conjugate is employed to detect and/or quantify biomarker present in a sample. Alternatively, a western blot assay can be used in which solubilized and separated biomarker is bound to nitrocellulose paper. The combination of a highly specific, stable liquid conjugate with a sensitive chromogenic substrate allows rapid and accurate identification of samples.

[0090] In some aspects of the methods of the present disclosure, the methods described herein can have a specificity, sensitivity, and/or accuracy of at least 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99%.

[0091] In some aspects of the methods of the present disclosure, a labeled probe, a labeled primer, a labeled antibody or a labeled nucleic acid can comprise a fluorescent label.

[0092] Any algorithm that can generate a score for a sample by assessing where that sample value falls onto a prediction model generated using different techniques, e.g., decision trees, can be used in the methods disclosed herein. The algorithm analyzes the data (i.e., expression levels) and then assigns a score. In some aspects, the algorithm can be a machine-learning algorithm. Exemplary algorithms that can be used in the methods disclosed herein can include, but are not limited to, XGBoost (XGB), Random Forest (RF), glmnet, cforest, Classification and Regression Trees for Machine Learning (CART), treebag, K-Nearest Neighbors (kNN), neural network (nnet), Support Vector Machine radial (SVM-radial), Support Vector Machine linear (SVM-linear), Naïve Bayes (NB), multilayer perceptron (mlp) or any combination thereof.

[0093] In some aspects of the methods of the present disclosure, the algorithm can be XGB (also called XGBoost). XGB is an implementation of gradient boosted decision trees designed for speed and performance.

[0094] In some aspects of the methods of the present disclosure, a therapy can comprise anti-cancer therapy, surgery, chemotherapy, targeted drug therapy, radiation therapy, immunotherapy, or any combination thereof.

[0095] In some aspects of the methods of the present disclosure, surgery can comprise removing a polyp during a colonoscopy, endoscopic mucosal resection, a partial colectomy, an ostomy, removing at least one cancerous lesion from the liver, or any combination thereof.

[0096] In some aspects of the methods of the present disclosure, anti-cancer therapy can comprise anti-colon cancer therapy.

[0097] In some aspects of the methods of the present disclosure, chemotherapy can comprise FOLFOX, FOLFIRI, a combination of 5-FU and leucovorin, capecitabine, irinotecan, CapeOx or any combination thereof.

[0098] In some aspects of the methods of the present disclosure, targeted drug therapy can comprise bevacizumab, cetuximab, panitumumab, regorafenib, a combination of trifluridine and tipiracil, an EGFR TKI inhibitor or any combination thereof.

[0099] In some aspects of the methods of the present disclosure, immunotherapy can comprise pembrolizumab, nivolumab or a combination of pembrolizumab and nivolumab.

[0100] For early-stage colon cancer, a minimally invasive approach to surgery can be used to remove the cancer. For example, if the cancer is completely contained within a polyp, the polyp can be removed during a colonoscopy. Endoscopic mucosal resection can be performed to remove larger polyps. Polyps that cannot be removed during a colonoscopy may be removed using laparoscopic surgery.

[0101] If the cancer has grown into or through the colon, partial colectomy can be performed to remove the part of the colon that contains the cancer, along with a margin of normal tissue on either side of the cancer. When it's not possible to reconnect the healthy portions of the colon or rectum, an ostomy can be performed to create an opening in the wall of the abdomen from a portion of the remaining bowel for the elimination of stool into a bag that fits securely over the opening. Lymph node removal can also be performed.

[0102] For advanced colon cancer, an operation to relieve a blockage of the colon or other conditions can also be performed. In specific cases where the cancer has spread only to the liver, surgery to remove the cancerous lesion from the liver can be performed.

[0103] For chemotherapies, either the FOLFOX (5-FU, leucovorin, and oxaliplatin) or CapeOx (capecitabine and oxaliplatin) regimens are used most often, but some patients may get 5-FU with leucovorin or capecitabine alone based on their age and health needs. Irinotecan can also be used as a chemotherapeutic agent for treating a colon cancer.

[0104] Targeted drug therapies target specific malfunctions that allow cancer cells to grow. These therapies include, but are not limited to, bevacizumab, cetuximab, panitumumab, ramucirumab, regorafenib, ziv-aflibercept, a combination of trifluridine and tipiracil, and an EGFR TKI inhibitor.

[0105] Immunotherapies for colon cancer include, but are not limited to, pembrolizumab (Keytruda®) and nivolumab (Opdivo®).

[0106] The sequence information of the colon cancer biomarkers and housekeepers is shown in Table 1.

TABLE-US-00001 TABLE 1 Colon Cancer Biomarker/Housekeeper Sequence Information SEQ Gene RefSeq ID Name Accession Sequence NO: ADRM1 NM_007002.3 gttagagccggctgcgcggcttacggggctcaatcggcgg 1 cgagagcggcaggcggggcgggccgaacgcgggtttccgg cggggcccggcaggcgccgaggaggaagagcgagcccgga cggcgcctctcgaacgagtgtgggcgcgaggcaggatgac gacctcaggcgcgctctttccaagcctggtgccaggctct cggggcgcctccaacaagtacttggtggagtttcgggcgg gaaagatgtccctgaaggggaccaccgtgactccggataa gcggaaagggctggtgtacattcagcagacggacgactcg cttattcacttctgctggaaggacaggacgtccgggaacg tggaagacgacttgatcatcttccctgacgactgtgagtt caagcgggtgccgcagtgccccagcgggagggtctacgtg ctgaagttcaaggcagggtccaagcggcttttcttctgga tgcaggaacccaagacagaccaggatgaggagcattgccg gaaagtcaacgagtatctgaacaaccccccgatgcctggg gcgctgggggccagcggaagcagcggccacgaactctctg cgctaggcggtgagggtggcctgcagagcctgctgggaaa catgagccacagccagctcatgcagctcatcggaccagcc ggcctcggaggactgggtgggctgggggccctgactggac ctggcctggccagcttactggggagcagtgggcctccagg gagcagctcctcctccagctcccggagccagtcggcagcg gtcaccccgtcatccaccacctcttccacccgtgccaccc cagccccttctgctccagcagctgcctcagcaactagccc gagccccgcgcccagttccgggaatggagccagcacagca gccagcccgacccagcccatccagctgagcgacctccaga gcatcctggccacgatgaacgtaccagccgggccagcagg cggccagcaagtggacctggccagtgtgctgacgccggag ataatggctcccatcctcgccaacgcggatgtccaggagc gcctgcttccctacttgccatctggggagtcgctgccgca gaccgcggatgagatccagaataccctgacctcgccccag ttccagcaggccctgggcatgttcagcgcagccttggcct cggggcagctgggccccctcatgtgccagttcggtctgcc tgcagaggctgtggaggccgccaacaagggcgatgtggaa gcgtttgccaaagccatgcagaacaacgccaagcccgagc agaaagagggcgacacgaaggacaagaaggacgaagagga ggacatgagcctggactgagccacgcgccgtcctccgagg aactgggcgcttgcagtgcgttgcacaccctcacctccca cccactgattattaataaagtcttttcttttacctgccaa aaaaaaaaaaaaaaaa CDK4 NM_000075.3 cacctcctgtccgcccctcagcgcatgggtggcggtcacg 2 tgcccagaacgtccggcgttcgccccgccctcccagtttc cgcgcgcctctttggcagctggtcacatggtgagggtggg ggtgagggggcctctctagcttgcggcctgtgtctatggt cgggccctctgcgtccagctgctccggaccgagctcgggt gtatggggccgtaggaaccggctccggggccccgataacg ggccgcccccacagcaccccgggctggcgtgagggtctcc cttgatctgagaatggctacctctcgatatgagccagtgg ctgaaattggtgtcggtgcctatgggacagtgtacaaggc ccgtgatccccacagtggccactttgtggccctcaagagt gtgagagtccccaatggaggaggaggtggaggaggccttc ccatcagcacagttcgtgaggtggctttactgaggcgact ggaggcttttgagcatcccaatgttgtccggctgatggac gtctgtgccacatcccgaactgaccgggagatcaaggtaa ccctggtgtttgagcatgtagaccaggacctaaggacata tctggacaaggcacccccaccaggcttgccagccgaaacg atcaaggatctgatgcgccagtttctaagaggcctagatt tccttcatgccaattgcatcgttcaccgagatctgaagcc agagaacattctggtgacaagtggtggaacagtcaagctg gctgactttggcctggccagaatctacagctaccagatgg cacttacacccgtggttgttacactctggtaccgagctcc cgaagttcttctgcagtccacatatgcaacacctgtggac atgtggagtgttggctgtatctttgcagagatgtttcgtc gaaagcctctcttctgtggaaactctgaagccgaccagtt gggcaaaatctttgacctgattgggctgcctccagaggat gactggcctcgagatgtatccctgccccgtggagcctttc cccccagagggccccgcccagtgcagtcggtggtacctga gatggaggagtcgggagcacagctgctgctggaaatgctg acttttaacccacacaagcgaatctctgcctttcgagctc tgcagcactcttatctacataaggatgaaggtaatccgga gtgagcaatggagtggctgccatggaaggaagaaaagctg ccatttcccttctggacactgagagggcaatctttgcctt tatctctgaggctatggagggtcctcctccatctttctac agagattactttgctgccttaatgacattcccctcccacc tctccttttgaggcttctccttctccttcccatttctcta cactaaggggtatgttccctcttgtccctttccctacctt tatatttggggtccttttttatacaggaaaaacaaaacaa agaaataatggtcttttttttttttttaatgtttcttcct ctgtttggctttgccattgtgcgatttggaaaaaccactt ggaagaagggactttcctgcaaaaccttaaagactggtta aattacagggcctaggaagtcagtggagccccttgactga caaagcttagaaaggaactgaaattgcttctttgaatatg gattttaggcggggcgtggtggctcacgcctataatccca gcacgttgggaggccaacgcgggtggatcacctgaggtca ggagttcgagaccagcctgactaacatggtgaaaccctgt ctctactaaaaatacaaaattagtcaggcgtggtggtgca cacctgtaatcccagctacttgggagactgaggcaggagg atcgcttgaacccgggaggcagaggttgcggtgagccgag atcatgccattgcactccagcctgggcaacagagcaagac tctgtgtcaaaaaaaaaaaaagaatatagatttttaaatg gcaaaaaaaaaaaaaaaaaa COMT NM_000754.3 cggcctgcgtccgccaccggaagcgccctcctaatccccg 3 cagcgccaccgccattgccgccatcgtcgtggggcttctg gggcagctagggctgcccgccgcgctgcctgcgccggacc ggggcgggtccagtcccgggcgggccgtcgcgggagagaa ataacatctgctttgctgccgagctcagaggagaccccag acccctcccgcagccagagggctggagcctgctcagaggt gctttgaagatgccggaggccccgcctctgctgttggcag ctgtgttgctgggcctggtgctgctggtggtgctgctgct gcttctgaggcactggggctggggcctgtgccttatcggc tggaacgagttcatcctgcagcccatccacaacctgctca tgggtgacaccaaggagcagcgcatcctgaaccacgtgct gcagcatgcggagcccgggaacgcacagagcgtgctggag gccattgacacctactgcgagcagaaggagtgggccatga acgtgggcgacaagaaaggcaagatcgtggacgccgtgat tcaggagcaccagccctccgtgctgctggagctgggggcc tactgtggctactcagctgtgcgcatggcccgcctgctgt caccaggggcgaggctcatcaccatcgagatcaaccccga ctgtgccgccatcacccagcggatggtggatttcgctggc gtgaaggacaaggtcacccttgtggttggagcgtcccagg acatcatcccccagctgaagaagaagtatgatgtggacac actggacatggtcttcctcgaccactggaaggaccggtac ctgccggacacgcttctcttggaggaatgtggcctgctgc ggaaggggacagtgctactggctgacaacgtgatctgccc aggtgcgccagacttcctagcacacgtgcgcgggagcagc tgctttgagtgcacacactaccaatcgttcctggaataca gggaggtggtggacggcctggagaaggccatctacaaggg cccaggcagcgaagcagggccctgactgcccccccggccc ccctctcgggctctctcacccagcctggtactgaaggtgc cagacgtgctcctgctgaccttctgcggctccgggctgtg tcctaaatgcaaagcacacctcggccgaggcctgcgccct gacatgctaacctctctgaactgcaacactggattgttct tttttaagactcaatcatgacttctttactaacactggct agctatattatcttatatactaatatcatgttttaaaaat ataaaatagaaattaagaatctaaatatttagatataact cgacttagtacatccttctcaactgccattcccctgctgc ccttgacttgggcaccaaacattcaaagctccccttgacg gacgctaacgctaagggcggggcccctagctggctgggtt ctgggtggcacgcctggcccactggcctcccagccacagt ggtgcagaggtcagccctcctgcagctaggccaggggcac ctgttagccccatggggacgactgccggcctgggaaacga agaggagtcagccagcattcacacctttctgaccaagcag gcgctggggacaggtggaccccgcagcagcaccagcccct ctgggccccatgtggcacagagtggaagcatctccttccc tactccccactgggccttgcttacagaagaggcaatggct cagaccagctcccgcatccctgtagttgcctccctggccc atgagtgaggatgcagtgctggtttctgcccacctacacc tagagctgtccccatctcctccaaggggtcagactgctag ccacctcagaggctccaagggcccagttcccaggcccagg acaggaatcaaccctgtgctagctgagttcacctgcaccg agaccagcccctagccaagattctactcctgggctcaagg cctggctagcccccagccagcccactcctatggatagaca gaccagtgagcccaagtggacaagtttggggccacccagg gaccagaaacagagcctctgcaggacacagcagatgggca cctgggaccacctccacccagggccctgccccagacgcgc agaggcccgacacaagggagaagccagccacttgtgccag acctgagtggcagaaagcaaaaagttcctttgctgcttta atttttaaattttcttacaaaaatttaggtgtttaccaat agtcttattttggcttatttttaa DHCR7 NM_001163817.1 aatcgctgacatcatccgggggcgggcgcccctgccctgc 4 gggtgactccgacccctggctagagggtaggcggcgtgga gcagcgcgcgcaagcgaggccaggggaaggtgggcgcagg actttagccggttgagaaggatcaagcaggcatttggagc acaggtgtctagaaacttttaaggggccggttcaagaagg aaaagttcccttctgctgtgaaactatttggcaagaggct ggagggcccaatggctgcaaaatcgcaacccaacattccc aaagccaagagtctagatggcgtcaccaatgacagaaccg catctcaagggcagtggggccgtgcctgggaggtggactg gttttcactggcgagcgtcatcttcctactgctgttcgcc cccttcatcgtctactacttcatcatggcttgtgaccagt acagctgcgccctgactggccctgtggtggacatcgtcac cggacatgctcggctctcggacatctgggccaagactcca cctataacgaggaaagccgcccagctctataccttgtggg tcaccttccaggtgcttctgtacacgtctctccctgactt ctgccataagtttctacccggctacgtaggaggcatccag gagggggccgtgactcctgcaggggttgtgaacaagtatc agatcaatggcctgcaagcctggctcctcacgcacctgct ctggtttgcaaacgctcatctcctgtcctggttctcgccc accatcatcttcgacaactggatcccactgctgtggtgcg ccaacatccttggctatgccgtctccaccttcgccatggt caagggctacttcttccccaccagcgccagagactgcaaa ttcacaggcaatttcttttacaactacatgatgggcatcg agtttaaccctcggatcgggaagtggtttgacttcaagct gttcttcaatgggcgccccgggatcgtcgcctggaccctc atcaacctgtccttcgcagcgaagcagcgggagctccaca gccatgtgaccaatgccatggtcctggtcaacgtcctgca ggccatctacgtgattgacttcttctggaacgaaacctgg tacctgaagaccattgacatctgccatgaccacttcgggt ggtacctgggctggggcgactgtgtctggctgccttatct ttacacgctgcagggtctgtacttggtgtaccaccccgtg cagctgtccaccccgcacgccgtgggcgtcctgctgctgg gcctggtgggctactacatcttccgggtggccaaccacca gaaggacctgttccgccgcacggatgggcgctgcctcatc tggggcaggaagcccaaggtcatcgagtgctcctacacat ccgccgatgggcagaggcaccacagcaagctgctggtgtc gggcttctggggcgtggcccgccacttcaactacgtcggc gacctgatgggcagcctggcctactgcctggcctgtggcg gcggccacctgctgccctacttctacatcatctacatggc catcctgctgacccaccgctgcctccgggacgagcaccgc tgcgccagcaagtacggccgggactgggagcgctacaccg ccgcagtgccttaccgcctgctgcctggaatcttctaagg gcacgccctagggagaagccctgtggggctgtcaagagcg tgttctgccaggtccatgggggctggcatcccagctccaa ctcgaggagcctcagtttcctcatctgtaaactggagaga gcccagcacttggcaggtgtccagtacctaatcacgctct gttccttgcttttgccttcaagggaattccgagtgtccag cactgccgtattgccagcacagacggattttctctaatca gtgtccctggggcaggaggatgacccagtcacctttacta gtcctttggagacaatttacctgtattaggagcccaggcc acgctacactctgcccacactggtgagcaggaggtcttcc cacgccctgtcattaggctgcatttactcttgctaaataa aagtgggagtggggcgtgcgcgttatccatgtattgcctt tcagctctagatccccctcccctgcctgctctgcagtcgt gggtggggcccgtgcgccgtttctccttggtagcgtgcac ggtgttgaactgggacactggggagaaaggggctttcatg tcgtttccttcctgctcctgctgcacagctgccaggagtg ctctgcctggagtctgcagacctcagagaggtcccagcac cggctgtggcctttcaggtgtaggcaggtgggctctgctt cccgattccctgtgagcgcccaccctctcgaaagaatttt ctgcttgccctatgactgtgcagactctggctcgagcaac ccggggaacttcaccctcaggggcctcccacaccttctcc agcgaggaggtctcagtcccagcctcgggagggcacctcc ttttctgtgctttcttccctgaggcattcttcctcatccc tagggtgttgtgtagaactctttttaaactctatgctccg agtagagttcatctttatattaaactteccctgttcaaat aa HMOX2 NM_001127204.1 catctctaggccccgccccgcgctgcgtgcccacgttgcg 5 ccggcctcgcgccagtccgctgggctgcagggactgcggc gcctgagggagtcgctgacgggcacgctgactggaggctg gcggacaggcgacagcgacctgcggcagagtcttgctgcg acacccaggctggagtgcaatggcgctatctcggctcact gcaacctccgcttcccggattcaagcgattctcctgcctc agcctcccgagtaggtgggactacaggaccagaggagcga gagcagcaagaaccacacccagcagcaatgtcagcggaag tggaaacctcagagggggtagacgagtcagaaaaaaagaa ctctggggccctagaaaaggagaaccaaatgagaatggct gacctctcggagctcctgaaggaagggaccaaggaagcac acgaccgggcagaaaacacccagtttgtcaaggacttctt gaaaggcaacattaagaaggagctgtttaagctggccacc acggcactttacttcacatactcagccctcgaggaggaaa tggagcgcaacaaggaccatccagcctttgcccctttgta cttccccatggagctgcaccggaaggaggcgctgaccaag gacatggagtatttctttggtgaaaactgggaggagcagg tgcagtgccccaaggctgcccagaagtacgtggagcggat ccactacatagggcagaacgagccggagctactggtggcc catgcatacacccgctacatgggggatctctcggggggcc aggtgctgaagaaggtggcccagcgagcactgaaactccc cagcacaggggaagggacccagttctacctgtttgagaat gtggacaatgcccagcagttcaagcagctctaccgggcca ggatgaacgccctggacctgaacatgaagaccaaagagag gatcgtggaggaggccaacaaggcttttgagtataacatg cagatattcaatgaactggaccaggccggctccacactgg ccagagagaccttggaggatgggttccctgtacacgatgg gaaaggagacatgcgtaaatgccctttctacgctgctgaa caagacaaaggtgccctggagggcagcagctgtcccttcc gaacagctatggctgtgctgaggaagcccagcctccagtt catcctggccgctggtgtggccctagctgctggactcttg gcctggtactacatgtgaagcacccatcatgccacaccgg taccctcctcccgactgaccactggcctacccctttctcc agccctgactaaactaccacctcaggtgactttttaaaaa atgctgggtttaagaaaggcaaccaataaaagccagatgc tagagcctctgcctgacagcatcctctctatgggccatat tccgcactgggcacaggccgtcaccctgggagcagtcggc acagtgcagcaagcctggcccccgacccagctctactcca ggcttccacacttctgggccctaggctgcttccggtagtc cctgtttttgcagtacatgggtgactatctcccctgttgg aggtgagtggcctgtaagtccaagctgtgcgagggggcct tgctggatgctgctgtacaacttctgggcctctcttggac cctgggagtgagggtgggtgtgggtggaagcctcagaggc cttgggagctcatccctctcacccagaatccctctaaccc cttgggtgcggtttgctcagccccagcttatctcctcctc cgcgctgtgtaaatgctccagcactcaataaagtgggctt tgcaagctaaaaaaaaaaaaaaaaaaaaaaaa MCM2 NM_004526.3 atgacgtcgcgttccgtagggctcttcccgggctttggtg 6 ggtcacgtgaaccacttttcgcgcgaaacctggttgttgc tgtagtggcggagaggatcgtggtactgctatggcggaat catcggaatccttcaccatggcatccagcccggcccagcg tcggcgaggcaatgatcctctcacctccagccctggccga agctcccggcgtactgatgccctcacctccagccctggcc gtgaccttccaccatttgaggatgagtccgaggggctcct aggcacagaggggcccctggaggaagaagaggatggagag gagctcattggagatggcatggaaagggactaccgcgcca tcccagagctggacgcctatgaggccgagggactggctct ggatgatgaggacgtagaggagctgacggccagtcagagg gaggcagcagagcgggccatgcggcagcgtgaccgggagg ctggccggggcctgggccgcatgcgccgtgggctcctgta tgacagcgatgaggaggacgaggagcgccctgcccgcaag cgccgccaggtggagcgggccacggaggacggcgaggagg acgaggagatgatcgagagcatcgagaacctggaggatct caaaggccactctgtgcgcgagtgggtgagcatggcgggc ccccggctggagatccaccaccgcttcaagaacttcctgc gcactcacgtcgacagccacggccacaacgtcttcaagga gcgcatcagcgacatgtgcaaagagaaccgtgagagcctg gtggtgaactatgaggacttggcagccagggagcacgtgc tggcctacttcctgcctgaggcaccggcggagctgctgca gatctttgatgaggctgccctggaggtggtactggccatg taccccaagtacgaccgcatcaccaaccacatccatgtcc gcatctcccacctgcctctggtggaggagctgcgctcgct gaggcagctgcatctgaaccagctgatccgcaccagtggg gtggtgaccagctgcactggcgtcctgccccagctcagca tggtcaagtacaactgcaacaagtgcaatttcgtcctggg tcctttctgccagtcccagaaccaggaggtgaaaccaggc tcctgtcctgagtgccagtcggccggcccctttgaggtca acatggaggagaccatctatcagaactaccagcgtatccg aatccaggagagtccaggcaaagtggcggctggccggctg ccccgctccaaggacgccattctcctcgcagatctggtgg acagctgcaagccaggagacgagatagagctgactggcat ctatcacaacaactatgatggctccctcaacactgccaat ggcttccctgtctttgccactgtcatcctagccaaccacg tggccaagaaggacaacaaggttgctgtaggggaactgac cgatgaagatgtgaagatgatcactagcctctccaaggat cagcagatcggagagaagatctttgccagcattgctcctt ccatctatggtcatgaagacatcaagagaggcctggctct ggccctgttcggaggggagcccaaaaacccaggtggcaag cacaaggtacgtggtgatatcaacgtgctcttgtgcggag accctggcacagcgaagtcgcagtttctcaagtatattga gaaagtgtccagccgagccatcttcaccactggccagggg gcgtcggctgtgggcctcacggcgtatgtccagcggcacc ctgtcagcagggagtggaccttggaggctggggccctggt tctggctgaccgaggagtgtgtctcattgatgaatttgac aagatgaatgaccaggacagaaccagcatccatgaggcca tggagcaacagagcatctccatctcgaaggctggcatcgt cacctccctgcaggctcgctgcacggtcattgctgccgcc aaccccataggagggcgctacgacccctcgctgactttct ctgagaacgtggacctcacagagcccatcatctcacgctt tgacatcctgtgtgtggtgagggacaccgtggacccagtc caggacgagatgctggcccgcttcgtggtgggcagccacg tcagacaccaccccagcaacaaggaggaggaggggctggc caatggcagcgctgctgagcccgccatgcccaacacgtat ggcgtggagcccctgccccaggaggtcctgaagaagtaca tcatctacgccaaggagagggtccacccgaagctcaacca gatggaccaggacaaggtggccaagatgtacagtgacctg aggaaagaatctatggcgacaggcagcatccccattacgg tgcggcacatcgagtccatgatccgcatggcggaggccca cgcgcgcatccatctgcgggactatgtgatcgaagacgac gtcaacatggccatccgcgtgatgctggagagcttcatag acacacagaagttcagcgtcatgcgcagcatgcgcaagac ttttgcccgctacctttcattccggcgtgacaacaatgag ctgttgctcttcatactgaagcagttagtggcagagcagg tgacatatcagcgcaaccgctttggggcccagcaggacac tattgaggtccctgagaaggacttggtggataaggctcgt cagatcaacatccacaacctctctgcattttatgacagtg agctcttcaggatgaacaagttcagccacgacctgaaaag gaaaatgatcctgcagcagttctgaggccctatgccatcc ataaggattccttgggattctggtttggggtggtcagtgc cctctgtgctttatggacacaaaaccagagcacttgatga actcggggtactagggtcagggcttatagcaggatgtctg gctgcacctggcatgactgtttgtttctccaagcctgctt tgtgcttctcacctttgggtgggatgccttgccagtgtgt cttacttggttgctgaacatcttgccacctccgagtgctt tgtctccactcagtaccttggatcagagctgctgagttca ggatgcctgcgtgtggtttaggtgttagccttcttacatg gatgtcaggagagctgctgccctcttggcgtgagttgcgt attcaggctgcttttgctgcctttggccagagagctggtt gaagatgtttgtaatcgttttcagtctcctgcaggtttct gtgcccctgtggtggaagagggcacgacagtgccagcgca gcgttctgggctcctcagtcgcaggggtgggatgtgagtc atgcggattatccactcgccacagttatcagctgccattg ctccctgtctgtttccccactctcttatttgtgcattcgg tttggtttctgtagttttaatttttaataaagttgaataa aatataaaaaaaaaaaaaaaaaaa PDXK NM_003681.4 cggaactcgcgggttcggagccgcccgctgaggtcagaag 7 gaggcgtctgcgctgatcgggtccgccgcgcgccagagcc agagtcgcagccgaggggagccggggccggagcccgagcc cgagccgagccggagcccgagcgagcggcggagaccgtgc ccccgcctcggccccgcgccgccgcggccaggcccggcat ggaggaggagtgccgggtgctctccatacagagccacgtc atccgcggctacgtgggcaaccgggcggccacgttcccgc tgcaggttttgggatttgagattgacgcggtgaactctgt ccagttttcaaaccacacaggctatgcccactggaagggc caagtgctgaattcagatgagctccaggagttgtacgaag gcctgaggctgaacaacatgaataaatatgactacgtgct cacaggttatacgagggacaagtcgttcctggccatggtg gtggacattgtgcaggagctgaagcagcagaaccccaggc tggtgtacgtgtgtgatccagtcttgggtgacaagtggga cggcgaaggctcgatgtacgtcccggaggacctccttccc gtctacaaagaaaaagtggtgccgcttgcagacattatca cgcccaaccagtttgaggccgagttactgagtggccggaa gatccacagccaggaggaagccttgcgggtgatggacatg ctgcactctatgggccccgacaccgtggtcatcaccagct ccgacctgccctccccgcagggcagcaactacctgattgt gctggggagtcagaggaggaggaatcccgctggctccgtg gtgatggaacgcatccggatggacattcgcaaagtggacg ccgtctttgtgggcactggggacctgtttgctgccatgct cctggcgtggacacacaagcaccccaataacctcaaggtg gcctgtgagaagaccgtgtctaccttgcaccacgttctgc agaggaccatccagtgtgcaaaagcccaggccggggaagg agtgaggcccagccccatgcagctggagctgcggatggtg cagagcaaaagggacatcgaggacccagagatcgtcgtcc aggccacggtgctgtgagggccccgccgcttgcccgtgac acgcagcgcgttggtgtctccgtgtttgtccctgtgaaaa catgtaacgtctgccttagagccatgaccgaaacttgata tttttttctttcatgagtgtccggcatctgctggtcttca ttgtgaaacgtgccagtcgtgctttgtgaaaaataacaaa gtggtcacagaaatttgtgatctgaaaacccggctccctt ccccacaaggctcctgggcctccgggaagacgggcccctg tttgccatctcgggggtgttccctgtgggagggtgagtgg gtgaggccgagcctgctgcgtgtggagcctcgagtgggcc ctggctgccactaccgtacagaggccgtgtcgcgctgggc tgggcctgggtggcctctgtctttgcatctctgagaagga gtcgggtggtaacggttggggtcaggaagaattctgccaa gtatctttactgtcattctgaccatagcctctttgttccc gcattcgaacttttggttcttactttgctgctcgtttagt ccctggggatttcagatcttaggctgttgtttcaccgtat gggagggttgatgtgagcttgcttggagacacacggtgca gcatcagggaccttcccaggccccagcaaattcaagtcgg tctgcagacctctcagctacccgcgggacctcttgtaacc catcggcatcttccaggaatccgccgagtgacttgaggaa gatgctaacgcagtaaggtctgtgctgggccaagagcagc tttgaagctccagagaaccaccccgtcaggttccttgtgg aagctcccctcatccgtggtgcagcaggctgagcactgcg cgtttgccacgtgctgcccgtgacagcacattgagccaca gcatttgtagacaggacagaggggtgcctgccccctgccc ctgctggcacatttaacccttgtcccctgacctcagttct gtgccccaccaaatgcccaggggcaagaggccaccctgga agctgccaatcttccaaggtgggtgtggggcacggtgggg gcgggcagctcccaggcccttgggcaggctggggtgacgg cagaggccacagcaccagctctgacaagtcctatcatcct ctgctcagcagtgacctccctggccccactttgcccagag tttggggtccccccaggtatagctataggcggcagtgcct gtccctggcctgccttgatttcagccacacccctgcagcc ctgcatcccagctctggggtgtgcagaggtttgtgtctcc agggaacccacggctggagagaaatagggagatgcaggaa gtgggggcccatggggcccccaagaagcggactctccaag gggtacccccaccccgctaccttccccacggacgggcccc tcctggagcccataccctcctgtgaggccattccagtgtc ttctagaaagactcgcttgccaggagtgcgttctttgttg aaaaatgccctgaagcgaaaagatgcaggtttatatggaa cccccaccccctcccccactctcccactctgttcgttctg aatgtcttcacgagcgtgcatcagggcgcctggctccccc acctcagccagtgagtcagacacgggtttcgcagccatgt ttcctggctccgaggacacgggtggcaggcccgttgcagc ccagagccactggtccctacagggcgccgccacaccagca ggaaggaggatggctgtgtccggagcctggcggggaggcg gcctccccagtatgtgagtgcagggatctgccagaaccac ctggccctctgtagggcgtttaactggaaataccctcact gccaagtggagactggggcgtgtgccacattgccagccac caggaaagcttttctttttcttttttttttttttttaaac accaagagcacgtatagcatgggggaaagaacctaaatgt ctctctgtcctgtgagctggtgaaaaacccagcatgagaa cgcagtgtcaggtgtgggactccttctgcccctgcagtgg gtgttacgggcggtgtgccctggcgagcaagctttgattc ttggttctttgagctcgtttcagaggctgagtccccacat cagctttagttcttggacttccctgtattaagcaagaatt aggagaatggctgtccctgcaggcgcctcccgtaaatcct gagctctctggcgcaatctgaaacttctcttctgttttct ttggctgtatcagccgaaccaggagaggcctgggctgcga ctaaggagaaagaaatcgggggtttctgagagcagatggt gcctttgtgggtgcagggcttttgtggaaattgtcagcct ctacgggcagagtccggcatcccctccccagactgcctgc tgtcaaaccacggagcagctggagcctgccctgtccacgg cccgtttccacccgggcatgttcgtctctcatgacttcgg cagaggcccctggtggccttcagtttcagtttctcatcca ggaaggtaaccttgggcattggcagtgggtttccctatgg cttggatccagattagaattgatctttgttttcactttcc atagttaataacatgcaaaataatgagaagaatttatttt aaggtgacagctatactggtccaacatcgcctgcttattg tcagggtacagaagtttaatactttcttaatccagttttt caaacttctccctgtagaccgtaaggatgaattccacaat aggatcctttttaaaatcgattttaaattgttgcctagtc ctgccaaggttattatgtgcatctgttatttttccaatac atgtaaacagttgcagcatgatgctttgtttaatgtcctg ttcttaagctcgttagagccagttttgaaacgtttggtct taccgtgaacggaggctggcttggcttagccacgctgatg agtaagtgagggatgtctccatcttgagatcaccaggcaa gagagttgcctgcaccaggtaagaggccaaagcccctggg gtaacagtccccaccgctacccgaggtaaaacaataaaag ctatgtggttgagctcaggcctctcgtgcctggtgtcaga gaaggcagagcccacagtaggtgcacggtgcaaggccctg ggagggcactggccagggaaggtggtatagatggccctca gattgcggggccccgagcagctccccactctgcccgtcca ccttccctggctccagcctcattctctctttagtttaact atgcaaagagaggaggttgagagtgttctggcagctggag ctcttttccttgtccttcctgccctccgatggggccacct gtgtcggggcagcagtgtccatgtttatggagatcagagg tgtccccactgtgtggctggactgtactctgctgcccggg tagccaggagtctctccctctctcccctgccgcctgcctg gtctcatgggcctccttcacacacccctccctgtggatcg cctgcctgggcccagagcaggggaactggagtttgtgagt gagcagagcaggttatgtgcagacagggaaacgagaactt tggacctggctttctgagtccaggtgagagctgtgtggcc ccccgatgccactctgcccgccggagggatgtgcctgctg agccttttccttccacgccgcctctcactgccaggccagc ggcttccgctgagactcgctggagaggcggctcccgtgtc cgtccaccgagcactcagatggatgctgatcaccagggcc gagggggctcccagaaggaccccaggccctggggagggtg gctgtgggaggccaagtccactgcccggaagtcttgtcag ccctaagccagggaagcctggagcgtggcctggcgggtct gggtggacaccgtccccactccggactcccagcacagggg aggatacctgagcctgtatggccctgtagccctgggcaga gctgggcctgtcgtgtgttcctgcctggcaggtgcaggtg ctggccatctgcaggtggaaggaggtgggaatcttggatt ttttgtttttttttgtttttttttttttgagatgaagtct cgctctgacacccaggctggcgtgcagtggtgtgatctcg gctcactgcaaactccgcttcctgggttcaagtggttctc ctgccccagcctcccaagtagctgggattacaggcatgcg ccaccacgctcagctgatttttgtatttttagtagagatg gggtttcaccatgttggccaagctggtctcaaactcctga cctcaagtgatctgcccgcctcggcctcccagagtgctgg gattacaggcatgagccagtgcacccggcggaatcttgga atttttatagacagcacctcagtttctgactccagccgca cacctcctgcctctgccagcaggggttgccgccagaccag agccagggccaggtccctgcgtccatcccccccggtagga tggacgtgagccatccttctaggggacttttttcagtgtg cgactcgtctctgttaggtggtaggagccagtttgtgtgg cctgtgccacgctccacagtgcgtggctgggctctgtgtg tggcctgtgtcccctgtccctgcaggacccagcaggcatc gtggcgtgacagctgtgtccaagccactgcccgggcatcc catcacccaccagggtgcacggtctctcctgctgggggct ttctgtcgcatgtgtgtctcctgtcgactctgcagtttgt tctcagagcagaatgtttcctgttctcagtgcacaaagac actggttttcaatcggcgtctaaaaccacgttcctgcctt tcattgcaacacggtgtgttcatttgtttaaaacagttta atgagtaagtttagatgactggtcaatatcttaaaaatgt atattagtaagaagttcttcctggaatttttctttcgatt ctggcagaataaacaggtgtttttagttttcccactgtct gagccaagcaggaccctgtcccagagcaagagatgtcccc ttccatctctgacccttgcctgggacaagctttgatgggg ggccccagcttcaaggctgtggtgggaacagcacccccaa atgccagcctctcctttcttcccatccaccagtatactgc ggggccatttctggtctttgtccaacaggaaacccatttc tggtgggatatgccttccagtgccacagggccactcaccc catgcatctctgtcctgcccgtcagtgctgggacggacag caagggcaagcccagtgtctggcggataggtgggtgggaa cagagaggggagaatgccgtcctaagcttctgcttgggga tcccccacacgacctgggtactgcctgggaaacctgtcct aagtaaaactatggacctcgcctcgcccaccggcctgcga agccagcatctccgtgaaggtggatggaagcgcctttgtc ctcattttgagctgcaagctgggtcagcggctctgaagcc ctcgagtgactttctaacccaagacccagcccctggcagg aggagggtgggtgcagggctggtgggacaaaaagaggcct cagcaggcctggaagacccttccagtacatcccacagcgt gtcgagcagctgggagaacctgtgtcaagctcgagccgtc ataggtccccatgaggtgtctgaagccccttcttggtgat gggaggcagaggtgctgacgttctggagcatggacgtgag tcctcagctggctccgcgtgggcccttggagggtgccagg tgtgtggtgaccttctggatgcctttaacttcatggctgc gtcattcctgatttagaactttaaccggagcttcatctag tgattgcaaaactggaccaatgggaggacggcggcgcagc ccgctccctccgtggaatggagctcagctcttcggaggca tcaaagcacctgtcgcctccgtggtccccctgctgaggga gtgcggcctctgcaaggttcgggggtggcttcgtttgcct ggagtggccggccctgcttgtgccatgtggatgtttgtga gcctcggtcctacagcactgtgtaggctgcatctgtttcg tgctggtcctgttgacttgtatgatatccacaaataaata ttttcatggcggtcgtgttgaaaaaaaaaa POP7 NM_005837.2 ggaaggggcggggcgaacggaagccgggaaggcgattcat 8 agctcgcggggtacgggcgcgcgtgcgcactccgcagccc gttcaggaccccggcgcgggcagggcgcccacgagctggc tggctgcttgcacccacatccttctttctctgggacctgg ggtcgcggttacttgggctggccggcgaacccttgagtgg cctggcggggagcgggcctcgcgcgcctggagggccctgt ggaacgaagagaggcacacagcatggcagaaaaccgagag ccccgcggtgctgtggaggctgaactggatccagtggaat acacccttaggaaaaggcttcccagccgcctgccccggag acccaatgacatttatgtcaacatgaagacggactttaag gcccagctggcccgctgccagaagctgctggacggagggg cccggggtcagaacgcgtgctctgagatctacattcacgg cttgggcctggccatcaaccgcgccatcaacatcgcgctg cagctgcaggcgggcagcttcgggtccttgcaggtggctg ccaatacctccaccgtggagcttgttgatgagctggagcc agagaccgacacacgggagccactgactcggatccgcaac aactcagccatccacatccgagtcttcagggtcacaccca agtaattgaaaagacactcctccacttatcccctccgtga tatggctcttcgcatgctgagtactggacctcggaccaga gccatgtaagaaaaggcctgttccctggaagcccaaagga ctctgcattgagggtgggggtaattgtctcttggtgggcc cagttagtgggccttcctgagtgtgtgtatgcggtctgta actattgccatataaataaaaaatcctgttgcactagtgt cctgccatcccaaaaaaaaaaaaaaaaaa S100P NM_005980.2 tgaggctgccttataaagcaccaagaggctgccagtggga 9 cattttctcggccctgccagcccccaggaggaaggtgggt ctgaatctagcaccatgacggaactagagacagccatggg catgatcatagacgtcttttcccgatattcgggcagcgag ggcagcacgcagaccctgaccaagggggagctcaaggtgc tgatggagaaggagctaccaggcttcctgcagagtggaaa agacaaggatgccgtggataaattgctcaaggacctggac gccaatggagatgcccaggtggacttcagtgagttcatcg tgttcgtggctgcaatcacgtctgcctgtcacaagtactt tgagaaggcaggactcaaatgatgccctggagatgtcaca gattcctggcagagccatggtcccaggcttcccaaaagtg tttgttggcaattattcccctaggctgagcctgctcatgt acctctgattaataaatgcttatgaaatga SNRPA NM_004596.4 ggcggggccaggagagaaagctttgtggtttggtctcagg 10 gaagtagcaggcgccggttgagagaactacggccctgtcg gaaggtaacctccggtgcaaacgaccatcggcggcaggcg agcggtacgcttggcgtccgggccttcctgggcccgtctg aggaaacttgctgctcgaggccaggctgcctaggacctgt cccttttttctatactggctcccacatccgggttttttct ccgggacggcccttcggatgcttgggccaatgggaatcgc catttagggtgctccgcccaccgggtcgcgtagagcatcc tggaagtcgtagtaaatctctcgagagttctctccgcacg cgggctggagaagcgggtcctacgcacgctttgttgtcgc gctttgcctccgtccttgcccctactcccgccttacctga cttccttttcggaggaagatccttgagcagccgacgttgg gacaaaggatttggagaaacccagggctaaagtcacgttt ttcctcctttaagacttacctcaacacttcactccatggc agttcccgagacccgccctaaccacactatttatatcaac aacctcaatgagaagatcaagaaggatgagctaaaaaagt ccctgtacgccatcttctcccagtttggccagatcctgga tatcctggtatcacggagcctgaagatgaggggccaggcc tttgtcatcttcaaggaggtcagcagcgccaccaacgccc tgcgctccatgcagggtttccctttctatgacaaacctat gcgtatccagtatgccaagaccgactcagatatcattgcc aagatgaaaggcaccttcgtggagcgggaccgcaagcggg agaagaggaagcccaagagccaggagaccccggccaccaa gaaggctgtgcaaggcgggggagccacccccgtggtgggg gctgtccaggggcctgtcccgggcatgccgccgatgactc aggcgccccgcattatgcaccacatgccgggccagccgcc ctacatgccgccccctggtatgatccccccgccaggcctt gcacctggccagatcccaccaggggccatgcccccgcagc agcttatgccaggacagatgccccctgcccagcctctttc tgagaatccaccgaatcacatcttgttcctcaccaacctg ccagaggagaccaacgagctcatgctgtccatgcttttca atcagttccctggcttcaaggaggtccgtctggtacccgg gcggcatgacatcgccttcgtggagtttgacaatgaggta caggcaggggcagctcgcgatgccctgcagggctttaaga tcacgcagaacaacgccatgaagatctcctttgccaagaa gtagcaccttttccccccatgcctgccccttcccctgttc tggggccacccctttcccccttggctcagccccctgaagg taagtccccccttgggggccttcttggagccgtgtgtgag tgagtggtcgccacacagcattgtacccagagtctgtccc cagacattgcacctggcgctgttaggccggaattaaagtg gctttttgaggtttggtttttcacaatcaaaaaaaaaaaa aaaaaa SORD NM_003104.5 ctccacgctagcgccgcccaggctggcacaaaggaggaag 11 cctagtcccgcccctgcgtgcggcgcttctcccaggcccc accttccatccagtgccctggaccctcggctgggtagcgc caccagagcgaccaaacgtcccgcgccttccaggccgcac tccagagccaaaagagctccatggcggcggcggccaagcc caacaacctttccctggtggtgcacggaccgggggacttg cgcctggagaactatcctatccctgaaccaggcccaaatg aggtcttgctgaggatgcattctgttggaatctgtggctc agatgtccactactgggagtatggtcgaattgggaatttt attgtgaaaaagcccatggtgctgggacatgaagcttcgg gaacagtcgaaaaagtgggatcatcggtaaagcacctaaa accaggtgatcgtgttgccatcgagcctggtgctccccga gaaaatgatgaattctgcaagatgggccgatacaatctgt caccttccatcttcttctgtgccacgccccccgatgacgg gaacctctgccggttctataagcacaatgcagccttttgt tacaagcttcctgacaatgtcacctttgaggaaggcgccc tgatcgagccactttctgtggggatccatgcctgcaggag aggcggagttaccctgggacacaaggtccttgtgtgtgga gctgggccaatcgggatggtcactttgctcgtggccaaag caatgggagcagctcaagtagtggtgactgatctgtctgc tacccgattgtccaaagccaaggagattggggctgattta gtcctccagatctccaaggagagccctcaggaaatcgcca ggaaagtagaaggtcagctggggtgcaagccggaagtcac catcgagtgcacgggggcagaggcctccatccaggcgggc atctacgccactcgctctggtgggaacctcgtgcttgtgg ggctgggctctgagatgaccaccgtacccctactgcatgc agccatccgggaggtggatatcaagggcgtgtttcgatac tgcaacacgtggccagtggcgatttcgatgcttgcgtcca agtctgtgaatgtaaaacccctcgtcacccataggtttcc tctggagaaagctctggaggcctttgaaacatttaaaaag ggattggggttgaaaatcatgctcaagtgtgaccccagtg accagaatccctgatgttaatgggctctgccctcatcccc acagtcttgggatctcagggcacaatggctggacatgggt gggctctgatgcagaactttctcttttgaatgttaagaat aactaatacaattcattgtgaacagaagtccttaagcaga ggaattggtgtgccttaaagatacaatctgggatagtttg ggggaacttgtagccagaatgccctgttcatgctgagcaa agttcagcaagtagagcagagtttggcaggcaggtgccag gaactccccttcttcctggagtgccttcattgaggaagga aatctggcccttgggtttcctggttccactgctactgacc cagaggggaatgagggctgagttatgaaaagataacttca tgaagacttaactggcccagaagctgattttcatgaaaat ctgccactcagggtctgggatgaaggcttgtcagcacttc cagtttagaacgcaatgtttctagagacatattggctgtt tgttttgatgataaaaggagaataagaaaaggcatcactt tcctggatccaggataatttttaaaccaatcaaatgaaaa aaacaaacaaacaaaaaaggaaatgtcatgtgaggttaaa ccagtttgcattcccctaatgtggaaaaagtaagaggact actcagcactgtttgaagattgcctcttctacagcttctg agaattgtgttatttcacttgccaagtgaaggaccccctc cccaacatgccccagcccacccctaagcatggtcccttgt caccaggcaaccaggaaactgctacttgtggacctcacca gagaccaggagggtttggttagctcacaggacttccccca ccccagaagattagcatcccatactagactcatactcaac tcaactaggctcatactcaattgatggttattagacaatt ccatttctttctggttattataaacagaaaatctttcctc ttctcattaccagtaaaggctcttggtatctttctgttgg aatgatttctatgaacttgtcttattttaatggtgggttt tttttctggtaagatttagacctaaatcgcatcatgccaa cttgtgactttgagactattcatcaagaatgaggatatag tagccatgacatagcttgagctatagcctttaattcctta ctttggctatgggtggagggtgagtttgaagaggttctga ttttcttgtaacctgggaaagccatgaccttgtgcccgat tctttcagattgctttgggtaataaatattggtggtggta tctgactcatgctgctgtttatggtcctgtttagtgggga atggactcaggttacccatttcccagagggaaggatccca ggatttttgaaggttacatattttctgtaccaaatataat ttcattgacatgaattatctctaatcctcatgacaagcca catacacaatcattttgtagataaagaagatataaatgcc agaggagaccttaagattgtcttacaacacaacccttcag ttaacgagagagg STOML2 NM_001287031.1 tccgggggagcggaactgcaagaggaaaggctcgggtagg 12 cttctgggagcgaccgctccgctcgtctcgttggttccgg aggtcgctgcggcggtgggaaatgctggcgcgcgcggcgc ggggcactggggcccttttgctgaggggctctctactggc ttctggccgcgctccgcgccgcgcctcctctggattgccc cgaaacaccgtggtactgttcgtgccgcagcaggaggcct gggtggtggagcgaatgggccgattccaccggatcctgga gcctggtttgaacatcctcatccctgtgttagaccggatc cgatatgtgcagagtctcaaggaaattgtcatcaacgtgc ctgagcagtcggctgtgactctcgacaatgtaactctgca aatcgatggagtcctttacctgcgcatcatggacccttac aaggcaagctacggtgtggaggaccctgagtatgccgtca cccagctagctcaaacaaccatgagatcagagctcggcaa actctctctggacaaagtcttccgggtggaggcagagcgg cggaaacgggccacagttctagagtctgaggggacccgag agtcggccatcaatgtggcagaagggaagaaacaggccca gatcctggcctccgaagcagaaaaggctgaacagataaat caggcagcaggagaggccagtgcagttctggcgaaggcca aggctaaagctgaagctattcgaatcctggctgcagctct gacacaacataatggagatgcagcagcttcactgactgtg gccgagcagtatgtcagcgcgttctccaaactggccaagg actccaacactatcctactgccctccaaccctggcgatgt caccagcatggtggctcaggccatgggtgtatatggagcc ctcaccaaagccccagtgccagggactccagactcactct ccagtgggagcagcagagatgtccagggtacagatgcaag tcttgatgaggaacttgatcgagtcaagatgagttagtgg agctgggcttggccagggagtctgggaacaaggaagcaga ttttcctgattctggctctagcttccctgccaagattttg gtttttatttttttatttgaactttagtcgtgtaataaac tcaccagtggcaaaccagaaactgtcctctttgattgggg aatgaagttgggaaagtcactagcattttccttggatcca gtcctgtcagcatgatgcctccatgaataagagtgaactt cttgtaaagtgaaact UMPS NM_000373.3 ctgcagacgaggcaggcggaagaggcgggacttcgcgggt 13 gacgtcatcggggcgccggaggcccggggcgcctgggaat ttgaagcaaacaggcagcgcgcgacaatggcggtcgctcg tgcagctttggggccattggtgacgggtctgtacgacgtg caggctttcaagtttggggacttcgtgctgaagagcgggc tttcctcccccatctacatcgatctgcggggcatcgtgtc tcgaccgcgtcttctgagtcaggttgcagatattttattc caaactgcccaaaatgcaggcatcagttttgacaccgtgt gtggagtgccttatacagctttgccattggctacagttat ctgttcaaccaatcaaattccaatgcttattagaaggaaa gaaacaaaggattatggaactaagcgtcttgtagaaggaa ctattaatccaggagaaacctgtttaatcattgaagatgt tgtcaccagtggatctagtgttttggaaactgttgaggtt cttcagaaggagggcttgaaggtcactgatgccatagtgc tgttggacagagagcagggaggcaaggacaagttgcaggc gcacgggatccgcctccactcagtgtgtacattgtccaaa atgctggagattctcgagcagcagaaaaaagttgatgctg agacagttgggagagtgaagaggtttattcaggagaatgt ctttgtggcagcgaatcataatggttctcccctttctata aaggaagcacccaaagaactcagcttcggtgcacgtgcag agctgcccaggatccacccagttgcatcgaagcttctcag gcttatgcaaaagaaggagaccaatctgtgtctatctgct gatgtttcactggccagagagctgttgcagctagcagatg ctttaggacctagtatctgcatgctgaagactcatgtaga tattttgaatgattttactctggatgtgatgaaggagttg ataactctggcaaaatgccatgagttcttgatatttgaag accggaagtttgcagatataggaaacacagtgaaaaagca gtatgaaggaggtatctttaaaatagcttcctgggcagat ctagtaaatgctcacgtggtgccaggctcaggagttgtga aaggcctgcaagaagtgggcctgcctttgcatcgggggtg cctccttattgcggaaatgagctccaccggctccctggcc actggggactacactagagcagcggttagaatggctgagg agcactctgaatttgttgttggttttatttctggctcccg agtaagcatgaaaccagaatttcttcacttgactccagga gttcagttggaagcaggaggagataatcttggccaacagt acaatagcccacaagaagttattggcaaacgaggttccga tatcatcattgtaggtcgtggcataatctcagcagctgat cgtctggaagcagcagagatgtacagaaaagctgcttggg aagcgtatttgagtagacttggtgtttgagtgcttcagat acatttttcagatacaatgtgaagacattgaagatatgtg gtcctcctgaaagtcactggctggaaataatccaattatt cctgcttggattcttccacagggcctgtgtaagaatgggt tctggagttctcatggtctttaggaaatattgagtaattt gtaatcaccgcattgatactataataagttcattcttaag cttgctttttttgagactggtgtttgttagacagccacag tcctgtctgggttagggtcttccacatttgaggatccttc ctatctctccatgggactagactgctttgttattctattt attttttaatttttttcgagacaggatctcactctgttgc ccaggatggagtgcagtggtgagatcacggctcattgcag cctcgacctcccaggtgatcctcccacctcagcttccaga ttagctggtgctataggcatgcaccaccacgtccatctaa atttctttattatttgtagagatgaggtcttgccatgtta cccaggctggtctcaactcctgggctcaagcgatcctcct gcctcagtctctcaaagtgctgggattacaggtgtgagcc actgtgcccagcctaattgcagtaagacaaaaattctagg gcaccaagaggctaaagtcagcacagcttttcttgtgtcc tgtattctctgtctaatgtgttgcccaaataatacctaat tgttagccattcccctccatctctggcctaaaagtgatag tccaggtatccacatgggctggttcccagaactgccattg ctcactctccaaagaggggaaggtggggaaggggaaggtg actatagctcagctcctgagctagtatctggctgttattt caacaaccggagttggggtttgggctcattttttccccta gccagcaattatggaccagtagtaacacaagtgacagctt cctgtgactgacttcacaattaggaggtctaagattccat ttgggtatttgcttaaggatcccacataattgtcccaacg gtcattagtagaggggaggtaagccttcattaataataaa gagaaagcccacattcaaggtggtgtttgagcaggggcag ggtgagggctgtcccggtgctcattgcaccagcacactca cattccttctcatttggggcccacctgcaggaagtggcac aggatcagccatttccccacccttgtcagctgatggccca ctgttctttaatgactcagaggaatgcctaggattttttt ttttttttgagacagaatctcactgtcgcccaggctggag ttcagtggcacgatctcggctcactgcaacttctgcctct ctggttcaagcagttctcctgcctcagcctcccgagtagc tgggactacaagcctaggatttttaactcaggtttttatt atattccctcctgaagtttttacttcaagagcttctgctc taaagtccaatttgggcttcatgtccccagtgctgcatct ccagggaaatgctgtctgtgggagagaccaactctcaagg aagaagtggccacagaaggagcaggaagggagttggccct cagggctactctggggaagccaaaagtcatgaaggggaga agaattttctgacaaaaacttgcaggaatctcttaggtgt cttcagtgttggagtgatatgttgagaggcctttggagtg atgtgctgaggtctcaggcgcccacctccctggctgtcac ttccatgtgtcagtggttctcccactttagcaggtatcag agtcacctggagtcttgtcaaaacaggtaccagccccacc cgcagcgtttctgactctgggtagctctgggatggggctt gagaatttgcgtttccaaaaaggtcccaggtgatgctgcg gttgcctgcgcagggactggactttgagaaccacttcact ggttattcacatttctgcctctgcagtgagacagccttga ggtctgcctcctgctaagagtcacatgctcctgtccttta gaaatgtgggctcctgccatctccaggacgcaggcactgt tcctgttgatgaaccctatttcacaggacccctgctaagg tgatttgaggggaaatgagaggaggctcaaataatcaccc agcccctgccacttactgaaagtgtaggtccttgtgcccc acaccatcagagtttctgcgttagcagatttgtggtttgc ccagcagcctgggcgtgtgcatttctaatgggtgcctcaa gtgatctgtttctgatttgtatttctattgtgaagagtca gcccagtactgcaggcctcttacctaagcagaatcccagt ctggcatcaaagctttagaggacaagttgattcaggcaga gaagaacttgggctatacaagcgctgttcttcagcattga agtattttggaggcattagatagtttaaccctttctcagt caaggaatatttacagaacatgatctctgggcattgtaac tcctggtcttagtggggaatatagggaccccatgtctcca tggggtgcacagaatgtctgtgagactgatggagtggaga acgccatcccccagcctctccagctactcgaggcattctg tagaacataagcccatagattgtgtgtgtgtgtgtgtgtg tgtgtgtgtgtgtgtgtgtgtgcatgcgcgcgcgtgcgca ctggaggaacctaagaaactatttggtgcacttcctctta ttttagagctcccaaagtgtagctccagaatcgtaaaggg atatgctcagtctcacagccagcctgtggatctcagtccc aacactcacccttgtgctactgagtcagctctaagaaaat ctgccaaaagtaggccgagggctggttttttgttttgttt tgtttgtttgatacagggtcttcactctgttgcccaggct ggagtatatcatggctcactgcaaccttgacttgggctca agcgatccgctcaagtagctggaactactctcaagtagct ctcaagagcctctcgagtggctggaactacaggcgtgcac caccacagctggttaatttttaaaattttttgtagagacg gtggaggaggttctcactgtgactcagtgtgtgcccgaca gcagagcccacaccactccagttgcagtggttgccatctg ggtcatcagacctggctgtcaggggtgcagccacaggaga gccaacagcagagggtgctggccgctgagctagctgctaa tgctggcctgggtgcagttctcatccaaagtacccggtgg gtgggagtcactcagtaccagttccgagcctgaacccaaa ctctcgtgtttctgctcacccctctctggcttctgccacc acatgggaagaatatgccctggttagcccatggcttctga agagcaagagaaagtagagcagagcctactccagcctccc ccgtccaatgtatgaaagccccagctgatctgtaagcctg ggagcgtgataaatgcttagtagtgcatgccatggagttc cagggtggtttattacacggcaatatctagctaaatacat ttaacttgctgcagctctctggatccagcctggttaccag gaagacaaaaactgggctccaccaggaaccagtcttctgc cttcccaaccatcacctctggctgcatcagcgatctctcc cagcgaaatagctgcttggtcttgtgtgaatcctgtactt taacacagtggaccaagtgtcagtcattgaaaatgaccat gagtaaccctgtggactctctgcagcttggttcctttgcc ccttaacaggtgggtatgaatcgtgtcttcagtgccaggg ctgaatgagaaagggcattcctttttgaaggaatctgata ctaaacacaaagcatgagaaaaatcaggacttgttggagt tatatttttaaaatatatattttaacagttatatatatta gatataatatataatagtatatataaataatactatattg cccaggctggtctcgaactccttagctcaagtgatcctcc tgccttggcttcccaaagtgctaggattacaggtgtgagc cactgctcccggcctgttggagttctttacatttatttta taatcaatgctgttttattaaatgcggattttattttgga ttacaggatgtagaatgccatatttttcttagatcatagg gcctttcacatttgtaatttggccttgtatgagttaccct gcaatccctttgttttccccataacccttccaaaggaagg ccgcaatagaaatacaaagagaaacaaaataattagaata ttttttaacttctaaagttcaaggttttggcataagtctg gtttagaagcacatttgcctagccctttccttcccaccaa gggggaaagtcttcctctagacaagaggcagagggctcct cagagtcagatcctggtgtgggctctcacgtgctgctgct gaatcccagggaaggagggaggaagggcagttgacaccca aaataagggtggggaactgtcagcagaggaggtctgtgtc atgtttttcagcgctggggttggggggagcccaggagagc aggaagatccagagatccctcgccccagctcggccatgtg tgtctgggacagagcctgaggtggcctgagcttcctgtgg ctccagagtaacattatagagaagctgaattctcctgttt ttctgaaaagggcatgggagttagctgagaagcagacctg gtgggcctgagagtctcaatcgtcaggtaaggacagtcag tgggaagtggacgggccgcacaaccaaggttctcatgagg acaaccatgtcttcgggggtgcccttgtgcacagacagct ccatagtcctgcctccaatgtcccaacactgcattgtctc cctgcacttagcagccctgcagggtgagacttggggagga tcctgaaatgattgtatttaacaagacatgctgtccttgt ttacctggaacctagcaatgttgttttctgccacaacttg aatagatacttgaagcagagatgatgttgagttaaaaaaa atatatacataaaaatatgggttcttttcaacctgaatag atggcctaaaaattcaaa MORF4L1 NM_001265603.1 cggcgtgccctggggcggcgcgggcgcaggggcgcgtgcg 14 cggcgggctgtcgttggctggagcagcggctgcgcgggtc gcggtgctgtgaggtctgcgggcgctggcaaatccggccc aggatgtagagctggcagtgcctgacggcgcgtctgacgc ggagttgggtggggtagagagtagggggcggtagtcgggg gtggtgggagaaggaggaggcggcgaatcacttataaatg gcgccgaagcaggacccgaagcctaaattccaggaggttg ggatgaatgggttccggagagcagagtactcaaatacgtg gacaccaatttgcagaaacagcgagaacttcaaaaagcca atcaggagcagtatgcagaggggaagatgagaggggctgc cccaggaaagaagacatctggtctgcaacagaaaaatgtt gaagtgaaaacgaaaaagaacaaacagaaaacacctggaa atggagatggtggcagtaccagtgagacccctcagcctcc tcggaagaaaagggcccgggtagatcctactgttgaaaat gaggaaacattcatgaacagagttgaagttaaagtaaaga ttcctgaagagctaaaaccgtggcttgttgatgactggga cttaattaccaggcaaaaacagctcttttatcttcctgcc aagaagaatgtggattccattcttgaggattatgcaaatt acaagaaatctcgtggaaacacagataataaggagtatgc ggttaatgaagttgtggcagggataaaagaatacttcaac gtaatgttgggtacccagctactctataaatttgagagac cacagtatgctgaaattcttgcagatcatcccgatgcacc catgtcccaggtgtatggagcgccacatctcctgagatta tttgtacgaattggagcaatgttggcttatacacctctgg atgagaagagccttgctttattactcaattatcttcacga tttcctaaagtacctggcaaagaattctgcaactttgttc agtgccagcgattatgaagtggctcctcctgagtaccatc ggaaagctgtgtgagaggcactctcactcacttatgtttg gatctccgtaaacacatttttgttcttagtctatctcttg tacaaacgatgtgctttgaagatgttagtgtataacaatt gatgtttgttttctgtttgattttaaacagagaaaaaata aaagggggtaatagctccttttttcttctttctttttttt tttcatttcaaaattgctgccagtgttttcaatgatggac aacagagggatatgctgtagagtgttttattgcctagttg acaaagctgcttttgaatgctggtggttctattcctttga cactacgcacttttataatacatgttaatgctatatgaca aaatgctctgattcctagtgccaaaggttcaattcagtgt atataactgaacacactcatccatttgtgcttttgttttt ttttatggtgcttaaagtaaagagcccatcctttgcaagt catccatgttgttacttaggcattttatcttggctcaaat tgttgaagaatggtggcttgtttcatggtttttgtatttg tgtctaatgcacgttttaacatgatagacgcaatgcattg tgtagctagttttctggaaaagtcaatcttttaggaattg tttttcagatcttcaataaattttttctttaaatttcaaa gaacaaaaaaaaaaaaaaa MRPL19 NM_014763.3 gtagtcttgacgtgagctagctggcatggcggcctgcatt 15 gcagcggggcactgggctgcaatgggcctaggccggagtt tccaagccgccaggactctgctccccccgccggcctctat cgcctgcagggtccacgcggggcctgtccggcagcagagc actgggccttccgagcccggtgcgttccaaccgccgccga aaccggtcatcgtggacaagcaccgccccgtggaaccgga acgcaggttcttgagtcctgaattcattcctcgaagggga agaacagatcctctgaaatttcaaatagaaagaaaagata tgttagaaaggagaaaagtactccacattccagagttcta tgttggaagtattcttcgtgttactacagctgacccatat gccagtggaaaaatcagccagtttctggggatttgcattc agagatcaggaagaggacttggagctactttcatccttag gaatgttatcgaaggacaaggtgtcgagatttgctttgaa ctttataatcctcgggtccaggagattcaggtggtcaaat tagagaaacggctggatgatagcttgctatacttacgaga tgcccttcctgaatatagcacttttgatgtgaatatgaag ccagtagtacaagagcctaaccaaaaagttcctgttaatg agctgaaagtaaaaatgaagcctaagccctggtctaaacg ctgggaacgtccaaattttaatattaaaggaatcagattt gatctttgtttaactgaacagcaaatgaaagaagctcaga agtggaatcagccatggcttgaatttgatatgatgaggga atatgatacttcaaaaattgaagctgcaatatggaaggaa attgaagcgtcgaaaaggtcttgattctgagaatgaattt ggttagttgcagaagatacattggctctaagaggatatat tttgagaccaatttaatttcatttataagaacatagtaat taagtgaactaagcattcattgttttattaatactttttt tctaaaataaaacttgtacaccagtttattactctaaaaa gagaattacacatgccaaatggaccaatgtccatttgctt attggaggcaaagctacaatagaagtcagagcatcaccag aatggtctttaatgagcatggaacctgagcaaagggaata ggtgggatgaattttttttttaattgtgaaacaattcata agcacaatatgatttacagaataataaacattcatgtacc cactatcaggttaagaaatagaacatttattaatatgtag gaatgttaagaaataaaacatttaataagatctcagaaga ctccagtaaatctgcaattgtatctctctcctttttaaat gtaaatatcatcttgacttgttaattattcccttgcattt cttttagtttactgccaacacatatattcttcaacaatat atttaattttgaaaaacctgaaaaaaaaaacctgttagca agtataaaggggcagtattactattattgcatgaaggctt caagggaaacgttacagtctttgggtcatagtctggcttc agcttcctctgagagtttacagaggccaattttgagcaaa ttcatggctaaggttatgagtgagttctgctaaacagaag gctcaccacaaggtatctggcaggattatactgggtagct ggatgttgcagaaatgtggttagaggaagtaaactgtttt ttgatgctcacagcatgatgaatcaaactctgtatcttag gattaggttaaaacaatacctttggtatgatatgagtgtt gttgctgatccatgcagcatggattggaaagctggggtat aagcacacatgctaaagaaaaacatgtaatttggtccata ctcacctggatatactgttcctcaggttaaaaaatacagt actatcctaaatcttgaaggcaactctcagcctatccatt gagttaccttcagatctgccctctggttcctagctgtctt gggactaacttctttcctgcgctcagctgttttctggatt ccatgttttccattttattgagtactaacttgttttgctg cagcacatcctttggtagcttctagaggaagtttgtgtgg aggtaaaatttttgagaccttgcatgtctcatgtttgatt gatactttatacgtttaggtaggaggtaattttccttcag gactttaaaaatattgttgctccattttctttgtttctat tgttgtattgagaaatccaatgccattttgatttccccat cataaatttcatgatgatgtgtcttggtgtgggtctatat ttatccattgtattgggttttaggtgaacccttccagata gtaactcatttctgtcagttctgggaaacacttagcattg gttgatgatttattctctgctgctttgttctcccaactat tatttggatgttggatatccagcactgggtatctattttc ttacctccctcccttgaccccagtctctgttttttagctc tttagctcaatcttccaactctttgctattgtattttaaa atcttaagaccccttcttgatttgtagaagttccttttct tacaaccaaaaagcctttatctatggatttgttcacagat aaggggtattcaatatagtgtatttttttttcatttaaaa ttgtttgcgcatctatttcctccaaatttctttctgtatt tattttttgttgtctatatttcagacttttccaggatatc tgataatctttggctgtcttcttatggttgaaagagggac taaaaagcttggaaagcctttgggttgtgggaaggggctg tctttaggattatctgaatgggcttttttgggagtcccct cctccacatgaatattttggttttgtcagattccctagaa tagaggcttccaatctccttcctggaggggtctgtccagg aaggagattgtctaggggtctgtcagacagcagctttcag ctacttccttgatctttttcactaatgattatatagtcat ctaactactgtcaacaagtaatagatatcctatccttcac ttgtttagattatttgctgagataacctctcaaaagaacc tctcaaaataaaaggttaacaagagcctatatcttatatt tttcttctctttatcttgttagaagatagctattaaaacc tgttctttttctgtcttgataaacacacttcaatcttggt agaatggtagatgggacagtatattttaggacctaaagct ctgcaaatgtatgatcagcttgtaagtacaggtgctcaaa aacatgtaaacaatcatgctttttactctgtaggaatatc tttaaaattcttgtgaatttttccccagaagtaaagcaaa tcttcccccagaaataaaattaaatgtgcataatctaaag ctttttttttttattgtggtaggatatatatataaaacat aatttgccattgtaaacattttaaatttacaagtcagagg cattaattacatcacaatgttgtgaaattattactactat ttccaaaattttctcatcaccccaaactgaaactctgtaa ctgttgagcaataacctcattcctgtatctctcccaaccc caggtaacctcaaatctttctttttatctttgagacaagg tctcattctatcactcaggtaggagtgcagtggtgtgatc atagctcattgcagcctcaaaatcctgggctcaagcaatc ctccttgagtagctaagactataggcacacattaactgcg cctggctgattttgttttttgtagagatgtggtcttgcta tgtttcccatgctggtcttgagttcctggcctcaagcagt ccttaagattcatccatgttgtggcatgtgtcagaatttc atttgtttttatgactaaataatattccattgtatgtata tacattttgttcatccatcttctgatgaacactgggatat gtctaccttttggctattgtgaataatgctgcagtaaaca ttgacataacaagtatgtatttgattgcctgtttctaagt tcttttgggtatacatcttgagtagaattgctagataatg tcatgttttatttctcttgtgatttcttcttcgatcccct ggttgagtgtgttaatttctacatgtttatgaatttccca ctgtttttttgttattgatttccaagttcattccattgtg attagagaagatacttagtatgattttaatgtttttgaga attggtgtgtggcctgatagatggtctgtcctggagaatg ttcctcatacacttgagcaaaatatttatcatgctattgt tgactgtagttttctatatgtctcttaggtcaaggtggtt tacaatgtgttaaggttctctttttttaaaaaaatttttg cacagagtatctttttctatgtgttccatgtatttgtgtc tttggagctatagtctcttgtagacagcatatcactatct tgttttgttttgttttttctgtccattctgccaatttctg ccttttgattggaaaatttaatccatttgcatttaaagta attaaggaaggactttcttctaccatttaacacttcttct atatgtcatatacttttttggcccctcatttcctctttat ggccttcttttctgtttttttgtagtgaactagtctgatt ctctttccactcccctttgtgtatatttgttagatgtttt atttgtggttgctatggggattatagttaacatcctacac ttaaaacaatctaatttaaactgataccaatttaccttca atagcatacaaaatctctactcctgtaaagctctgcccct gccccccttatgttattgatggcacaaattgcctaataaa taatttatagttatttgtatgagtttgtcttttaaatcat ttaggaaataaaaagtggagttagaaaacagtatgatagt aatactgacttttatatttgtcaatatatttatcttattt tggatccttatttcattatatagatttgagttactgtcta gtgcccttccatttcggcccaaaggattcccttatgcatt tcttgcagggcaagtctaattgtaataaactccctcagct tttgttttatctgagaatgtcttgatttctcccttatttt tgatggataattttgccagatacatgaatttttggtaaca gtatttttctttcagcactttaaatatgtcatcccactac cttctgacttcatggtttctcatgagatattagatgttat aaaatttgaggattcctcattcttgatgagtcagttctgt cttattgcttttcggatttgctcagcttttgtcttttgac agtttgattataacgcggctcagtgtgggtctctgagttt atcccacttagagtttgttgagtttcttggagtcatagat ttatgtcttttatcaaattttggacatatttggctattat ttcttcaatttttttcactgcttctttcttttccttctga aatattcttaatgtatatgttggtctgtttgatgctgtct caccagtttcttaggctgtgttctcttttgttcctcagac ttgattattgcagttgcccttctttttatttttttcaagt ttgttgattcttctccctgttcagatcaactgttgaactc ctctagtgaatttatttcagttactgtacttttcagctcc aagatttatctttggttcctttttataacgtctgtgtctt tattgatattctcattttgttcatatgtctctttcttcct ttagttctttgtccatgttttcctttagctctttgggctt atttaagacaattgtttaaagtctttgcatagtaagtcca atgtctgtgtttcttcagggatggttttcattattttgtt ttcaatgagccatactttcctgtgtctttgtatgctgtct ttttgttgttgaaaactgtatgtttgaacatcataacgtg gtggccctgaaaatcagatattccccccttcctgagagtt agttttatttttattattgaagattgtagcagtctattgc tacatgtgcagtcatttccaaactatttttgcaaagactg tattccttctgtgtgtcatcactgaagtctctgttcctta gtttgtgtttaatagtttgacatagatttccttgaaagga gttaaaactagcagaaaaatctctctcccagtctttccag tctttgtagattggttctgtgctgggcttttccattaata cttagccaggcttgtactgagcctaacaatcaggcccaaa agcgtagggtctttgcagatcttgtctgagcatgcttctt gctgtgtatgcacgtagttttctaaatctccctgtatgtg ctgttgaatattctaatttcccaaagaaactcctttgcag ctttttctcacagaacatagatggttttttggatatcttg accatagtctttcgacccaggtgtttgcggttgttagttc accttacacttttttcaagcattgcctactgcttacgatg agtgctctgtcaatcctttaagtagccccagacaggctac cagagacttaaacaagaatttgtaagttctgctcagcttc ctctagaaatggggatcagggtccaagacagaatgcagtt gctgatttcaagactgctgcaacaccagggagcttgtggg ggaagggcaagcagaaatgtcacaaagctttcttgccatt ttaaagttgcctgttcttgactcagcatttgcttcattgc tataaactttttactgtttttcagagttctgataaaattg gctatgcctgttcctgctttaaaaaatatatatatatttt ttagggattggggtctcactatactgaccaggctggtctt gaacttctggcctcaagccatcctctcatttcagcttccc aaagtgctgcaattacacgcgtgaaccaccacacccagcc cctgcttgtttttcaatgtgcctactccaccatgttgctc aagtatgtatattttctaaactaccttgtagtgttgtgat gggaaataaatccctgagccttttgaataactcagagaga tcaaaaacttagtttatcctattcgaaggattagaaaaat gatatatctttcactttttcagggataggctcctcattag aaggctcctatgtgccgatgctgtacaagacatttcattt ctcttaatgtttacaacaagcttgttgccaaggctgatct tgaactcctggcctcaaacgatcctcccagctcagtctca caaagtgttgggatgtctggccaactaatgactatcttaa ctcttgtgtttcaatgtttatgccttcttttatcttgact gattgtatgactatgtcttctagaacaatgttgaacagaa atggtgagagcagacatccttgctttaatatttcaccatt atatatgatgttaggtatagatttttctcacagatgcctt ttatcagattgaggaatttatattcctactttgccgaaag gtttttgtagtatgagggggtgctgaattttgtcaaacac tttttcggtaataattgagatgattggttctgcagtcatc gagatgtggattttctcctttattctgttcgtgagtgatt acactggttgactaatgttaaaacaaccttactttccagg aataaaccctattatcttttttataca PSMC4 NM_153001.2 tgcgggtacggacagcgcatgagcttatgttgagggcgga 16 gcccagaccagcccttcgtcctatcctgcccttccagcac ctctcagccgtaacttaaactacacttcccagaagcctcc tcagccagggacttccgttgtcgtcagcggaagcggtgac agatcatcccaggccacacagaggccggcttggtcactat ggaggagataggcatcttggtggagaaggctcaggatgag atcccagcactgtccgtgtcccggccccagaccggcctgt ccttcctgggccctgagcctgaggacctggaggacctgta cagccgctacaaggaggaggtgaagcgaatccaaagcatc ccgctggtcatcggacaatttctggaggctgtggatcaga atacagccatcgtgggctctaccacaggctccaactatta tgtgcgcatcctgagcaccatcgatcgggagctgctcaag cccaacgcctcagtggccctccacaagcacagcaatgcac tggtggacgtgctgccccccgaagccgacagcagcatcat gatgctcacctcagaccagaagccagatgtgatgtacgcg gacatcggaggcatggacatccagaagcaggaggtgcggg aggccgtggagctcccgctcacgcatttcgagctctacaa gcagatcggcatcgatcccccccgaggcgtcctcatgtat ggcccacctggctgtgggaagaccatgttggcaaaggcgg tggcacatcacacaacagctgcattcatccgggtcgtggg ctcggagtttgtacagaagtatctgggtgagggcccccgc atggtccgggatgtgttccgcctggccaaggagaatgcac ctgccatcatcttcatagacgagattgatgccatcgccac caagagattcgatgctcagacaggggccgacagggaggtt cagaggatcctgctggagctgctgaatcagatggatggat ttgatcagaatgtcaatgtcaaggtaatcatggccacaaa cagagcagacaccctggatccggccctgctacggccagga cggctggaccgtaaaattgaatttccacttcctgaccgcc gccagaagagattgattttctccactatcactagcaagat gaacctctctgaggaggttgacttggaagactatgtggcc cggccagataagatttcaggagctgatattaactccatct gtcaggagagtggaatgttggctgtccgtgaaaaccgcta cattgtcctggccaaggacttcgagaaagcatacaagact gtcatcaagaaggacgagcaggagcatgagttttacaagt gacccttcccttccctccaccacaccactcaggggctggg gcttctctcgcacccccagcacctctgtcccaaaacctca ttcccttttttctttacccaggattggtttcttcaataaa tagataagatcgaatccatttaatttcttcttagaagttt aactcctttggagaatgtgggccttgaataggatcctctg ggtccctcttaatctgacagatgagcagacgaggtgcatg gcctgggttgcagcttgagagaaccaaaatattcaaacca gatgacttccaaaatgtggggaaagggatggaaaatgaac ctgagatggagtccttaatcacgggataaagccctgtgca tctccctcatttcctacaggtaaaagacagtaaagaaatt caggtcacaggccttgggagttcataggaaggagatgtcc agtgctgtccagtagaacttt SF3A1 NM_005877.5 ggtcccggaagtgcgccagtcgtaccttcgcggccgcaac 17 tcgctcggccgccgccatcttgcgagctcgtcgtactgac cgagcggggaggctgtcttgaggcggcaccgctcaccgac accgaggcggactggcagccctgagcgtcgcagtcatgcc ggccggacccgtgcaggcggtgcccccgccgccgcccgtg cccacggagcccaaacagcccacagaagaagaagcatctt caaaggaggattctgcaccttctaagccagttgtggggat tatttaccctcctccagaggtcagaaatattgttgacaag actgccagctttgtggccagaaacgggcctgaatttgaag ctaggatccgacagaacgagatcaacaaccccaagttcaa ctttctgaaccccaatgacccttaccatgcctactaccgc cacaaggtcagcgagttcaaggaagggaaggctcaggagc cgtccgccgccatccccaaggtcatgcagcagcagcagca gaccacccagcagcagctgccccagaaggtccaagcccaa gtaatccaagagaccatcgtgcccaaagagcctcctcctg agtttgagttcattgctgatcctccctctatctcagcctt cgacttggatgtggtgaagctgacggctcagtttgtggcc aggaatgggcgccagtttctgacccagctgatgcagaaag agcagcgcaactaccagtttgactttctccgcccacagca cagcctcttcaactacttcacgaagctagtggaacagtac accaagatcttgattccacccaaaggtttattttcaaagc tcaagaaagaggctgaaaacccccgagaagttttggatca ggtgtgttaccgagtggaatgggccaaattccaggaacgt gagaggaagaaggaagaagaggagaaggagaaggagcggg tggcctatgctcagatcgactggcatgattttgtggtggt ggaaacagtggacttccaacccaatgagcaagggaacttc cctccccccaccacgccagaggagctgggggcccgaatcc tcattcaggagcgctatgaaaagtttggggagagtgagga agttgagatggaggtcgagtctgatgaggaggatgacaaa caggagaaggcggaggagcctccttcccagctggaccagg acacccaagtacaagatatggatgagggttcagatgatga agaagaagggcagaaagtgcccccacccccagagacaccc atgcctccacctctgcccccaactccagaccaagtcattg tccgcaaggattatgatcccaaagcctccaagcccttgcc tccagcccctgctccagatgagtatcttgtgtcccccatt actggggagaagatccccgccagcaaaatgcaggaacaca tgcgcattggacttcttgaccctcgctggctggagcagcg ggatcgctccatccgtgagaagcagagcgatgatgaggtg tacgcaccaggtctggatattgagagcagcttgaagcagt tggctgagcggcgtactgacatcttcggtgtagaggaaac agccattggtaagaagatcggtgaggaggagatccagaag ccagaggaaaaggtgacctgggatggccactcaggcagca tggcccggacccagcaggctgcccaggccaacatcaccct ccaggagcagattgaggccattcacaaggccaaaggcctg gtgccagaggatgacactaaagagaagattggccccagca agcccaatgaaatccctcaacagccaccgccaccatcttc agccaccaacatccccagctcggctccacccatcacttca gtgccccgaccacccacaatgccacctccagttcgtacta cagttgtctccgcagtacccgtcatgccccggcccccaat ggcatctgtggtccggctgcccccaggctcagtgatcgcc cccatgccgcccatcatccacgcgcccagaatcaacgtgg tgcccatgcctccctcggcccctcctattatggccccccg cccaccccccatgattgtgccaacagcctttgtgcctgct ccacctgtggcacctgtcccagctccagccccaatgcccc ctgtgcatcccccacctcccatggaagatgagcccacctc caaaaaactgaagacagaggacagcctcatgccagaggag gagttcctgcgcagaaacaagggtccagtgtccatcaaag tccaggtgcccaacatgcaggataagacggaatggaaact gaatgggcaggtgctggtcttcacccteccactcacggac caggtctctgtcattaaggtgaagattcatgaagccacag gcatgcctgcagggaaacagaagctacagtatgagggtat cttcatcaaagattccaactcactggcttactacaacatg gccaatggcgcagtcatccacctggccctcaaggagagag gcgggaggaagaagtagacaagaggaacctgctgtcaagt ccctgccattttgcctctcctgtctcccaccccctgcccc agacccaggagcccccctgaggctttgccttgcctgcata tttgtttcgctcttactcagtttgggaattcaaattgtcc tgcagaggttcattcccctgaccctttccccacattggta agagtagctgggttttctaagccactctctggaatctctt tgtgttagggtctcgatttgaggacattcatttcttcagc agcccattagcaactgagagcccagggatgtcctacagga tagtttcatagtgacaggtggcacttggctaatagaatat ggctgatattgtcattaatcattttgtaccttgacatggg ttgtctaataaaactcggacccttcttgtgaaatcagtta aataagacttgtctcggtcacctgtgccctgtccagactc gaggcagtggtaacactgcacagtgctatgtggcttctct ttgaggatttttgggttttgtaactaaattcttgctgccc tcatactttttatgtattagaatcatattcgtattgccct tttaaaacattgggatcctccaaaggcctgccccatgtat ttaacagtaatacaggaagcatggcaggcaccatgcaaac caaggatggatggtgcagtccctgtgtcagtgggcggtgg tttcctgctggcctggaatcactcatcacctgattgattg gctctgtggtcctgggcaggtgcctcataggtgtgtggat atgatgacgtttctttaaaatgtatgtatttaacaaatac ttaattgtattaaggtcatgtaccaaggatttgataaagt ttaaataatttactctctacttttatccattttatccatt ttaactcatgtaatcctcatgtgagtattcctgtttaaca cttgagtaaactgaggcacagagaacataagttgcatgcc atagtcacacactgtgaaagtgaaaagagaatgtgtgcaa aacacgtcacagtcctggtttctgagtaaaggcaggctgt tatctttagaatcaagctatcacagggagataggcaatgc tgtgggtgttggaggaaggtgagagcctgttgctaacaat ttcctggttttaaagctaaggctgattttattgggaagat ctcacatgtgtgtggcccctgagagttcccagtgcctttt atttgcagtccttccatttggacctcctagctgccccatc aggtcatctccagggctcagaggggtgagaccatttccca aggtcacagaaccagctctctagtcaccaccctgcctctc cctctcacccagagtcagtaccagttttatggctttatta caaactgctgggtccctcccattttcaacttgattgatgg gatgtcatcccttatcctgtctgacatttgcctctggcct ggttgctagaagtttgccccaggggcaagagttgaaattt ggcttcctgaggtgggctttgtggtttgcgtccctaaagt gagcccactactggttgcttgtccatggccaacaccagaa atcccctgagcactacctgggtctcattccaagaaggaag agggtcaggagacctggggagtctcatattccaagttctt ctttctttctgggagcagtgggcagttcatggtgttaggg cactcacccccacagactggcaaaccctgcaggacttccg tggctgaggctgtgaccggaggccaggaatgccgttgggt ggattgtgagtgaatgggccctttgagctgccctctagag agcaaatccagtttcctggagctcctgaatgaatatctgt actggctcgctcagatgcagaagctccattgaccatgagg ccttgtgaacatcagtggccacaggcccagtgtgctgctt ggcactgcactagtttaggacctgcagcatgtaggtagcg tcctagtgtttataatacaaagctgctctgcacagctttt ctgattcttcttgcaatctcctgaggattatctgccccat ttttaaaacgaggtggaatacccaaggtcatgtagccagt gagtgctctggaaagccaaagcagctcatcccttcctggg gaccacactgctctgctccaccagaccacactatgaaata ggaataagtgctcctgttgcaggactgctgggaaaacagg tggtgtgggacttaagtcaccataattttgaagacttgca tgcagagggctccaggaattgtagacattaaggaatttca ctttcagttctacccactacttaagtacttgtcatgtact cttagaggaggccagtaatgatcagaaccattttacttta aaattaataatattgtattagagaatatattaaatggtta tattgggttatgttaggatatatacttgaatggaaataca tgtactattagcaatcatatttcatttatccctgtaatta gacaagaaagcataatatagctctactcatgggtacacat accagtgtataagatttttagaagtttactttttaaaaat aaaagcaaaatgtaagatcttaaaaaaaaaaaaaaaaaa PUM1 NM_001020658.1 agtgggccgccatgttgtcggagtgaaaggtaagggggag 18 cgagagcgccagagagagaagatcggggggctgaaatcca tcttcatcctaccgctccgcccgtgttggtggaatgagcg ttgcatgtgtcttgaagagaaaagcagtgctttggcagga ctctttcagcccccacctgaaacatcaccctcaagaacca gctaatcccaacatgcctgttgttttgacatctggaacag ggtcgcaagcgcagccacaaccagctgcaaatcaggctct tgcagctgggactcactccagccctgtcccaggatctata ggagttgcaggccgttcccaggacgacgctatggtggact acttctttcagaggcagcatggtgagcagcttgggggagg aggaagtggaggaggcggctataataatagcaaacatcga tggcctactggggataacattcatgcagaacatcaggtgc gttccatggatgaactgaatcatgattttcaagcacttgc tctggagggaagagcgatgggagagcagctcttgccaggt aaaaagttttgggaaacagatgaatccagcaaagatggac caaaaggaatattcctgggtgatcaatggcgagacagtgc ctggggaacatcagatcattcagtttcccagccaatcatg gtgcagagaagacctggtcagagtttccatgtgaacagtg aggtcaattctgtactgtccccacgatcggagagtggggg actaggcgttagcatggtggagtatgtgttgagctcatcc ccgggcgattcctgtctaagaaaaggaggatttggcccaa gggatgcagacagtgatgaaaacgacaaaggtgaaaagaa gaacaagggtacgtttgatggagataagctaggagatttg aaggaggagggtgatgtgatggacaagaccaatggtttac cagtgcagaatgggattgatgcagacgtcaaagattttag ccgtacccctggtaattgccagaactctgctaatgaagtg gatcttctgggtccaaaccagaatggttctgagggcttag cccagctgaccagcaccaatggtgccaagcctgtggagga tttctccaacatggagtcccagagtgtccccttggacccc atggaacatgtgggcatggagcctcttcagtttgattatt caggcacgcaggtacctgtggactcagcagcagcaactgt gggactttttgactacaattctcaacaacagctgttccaa agacctaatgcgcttgctgtccagcagttgacagctgctc agcagcagcagtatgcactggcagctgctcatcagccgca catcggtttagctcccgctgcgtttgtccccaatccatac atcatcagcgctgctcccccagggacggacccctacacag ctggattggctgcagcagcgacactaggcccagctgtggt ccctcaccagtattatggagttactccctggggagtctac cctgccagtcttttccagcagcaagctgccgctgccgctg cagcaactaattcagctaatcaacagaccaccccacaggc tcagcaaggacagcagcaggttctccgtggaggagccagc caacgtcctttgaccccaaaccagaaccagcagggacagc aaacggatccccttgtggcagctgcagcagtgaattctgc ccttgcatttggacaaggtctggcagcaggcatgccaggt tatccggtgttggctcctgctgcttactatgaccaaactg gtgcccttgtagtgaatgcaggcgcgagaaatggtcttgg agctcctgttcgacttgtagctcctgccccagtcatcatt agttcctcagctgcacaagcagctgttgcagcagccgcag cttcagcaaatggagcagctggtggtcttgctggaacaac aaatggaccatttcgccctttaggaacacagcagcctcag ccccagccccagcagcagcccaataacaacctggcatcca gttctttctacggcaacaactctctgaacagcaattcaca gagcagctccctcttctcccagggctctgcccagcctgcc aacacatccttgggattcggaagtagcagttctctcggcg ccaccctgggatccgcccttggagggtttggaacagcagt tgcaaactccaacactggcagtggctcccgccgtgactcc ctgactggcagcagtgacctttataagaggacatcgagca gcttgacccccattggacacagtttttataacggccttag cttttcctcctctcctggacccgtgggcatgcctctccct agtcagggaccaggacattcacagacaccacctccttccc tctcttcacatggatcctcttcaagcttaaacctgggagg actcacgaatggcagtggaagatacatctctgctgctcca ggcgctgaagccaagtaccgcagtgcaagcagcgcctcca gcctcttcagcccgagcagcactcttttctcttcctctcg tttgcgatatggaatgtctgatgtcatgccttctggcagg agcaggcttttggaagattttcgaaacaaccggtacccca atttacaactgcgggagattgctggacatataatggaatt ttcccaagaccagcatgggtccagattcattcagctgaaa ctggagcgtgccacaccagctgagcgccagcttgtcttca atgaaatcctccaggctgcctaccaactcatggtggatgt gtttggtaattacgtcattcagaagttctttgaatttggc agtcttgaacagaagctggctttggcagaacggattcgag gccacgtcctgtcattggcactacagatgtatggctgccg tgttatccagaaagctcttgagtttattccttcagaccag caggtaattaatgagatggttcgggaactagatggccatg tcttgaagtgtgtgaaagatcagaatggcaatcacgtggt tcagaaatgcattgaatgtgtacagccccagtctttgcaa tttatcatcgatgcgtttaagggacaggtatttgccttat ccacacatccttatggctgccgagtgattcagagaatcct ggagcactgtctccctgaccagacactccctattttagag gagcttcaccagcacacagagcagcttgtacaggatcaat atggaaattatgtaatccaacatgtactggagcacggtcg tcctgaggataaaagcaaaattgtagcagaaatccgaggc aatgtacttgtattgagtcagcacaaatttgcaagcaatg ttgtggagaagtgtgttactcacgcctcacgtacggagcg cgctgtgctcatcgatgaggtgtgcaccatgaacgacggt ccccacagtgccttatacaccatgatgaaggaccagtatg ccaactacgtggtccagaagatgattgacgtggcggagcc aggccagcggaagatcgtcatgcataagatccggccccac atcgcaactcttcgtaagtacacctatggcaagcacattc tggccaagctggagaagtactacatgaagaacggtgttga cttagggcccatctgtggcccccctaatggtatcatctga ggcagtgtcacccgctgttccctcattcccgctgacctca ctggcccactggcaaatccaaccagcaaccagaaatgttc tagtgtagagtctgagacgggcaagtggttgctccaggat tactccctcctccaaaaaaggaatcaaatccacgagtgga aaagcctttgtaaatttaattttattacacataacatgta ctattttttttaattgactaattgccctgctgttttactg gtgtataggatacttgtacataggtaaccaatgtacatgg gaggccacatattttgttcactgttgtatctatatttcac atgtggaaactttcagggtggttggtttaacaaaaaaaaa aagctttaaaaaaaaaagaaaaaaaggaaaaggtttttag ctcatttgcctggccggcaagttttgcaaatagctcttcc ccacctcctcattttagtaaaaaacaaacaaaaacaaaaa aacctgagaagtttgaattgtagttaaatgaccccaaact ggcatttaacactgtttataaaaaatatatatatatatat atatatatataatgaaaaaggtttcagagttgctaaagct tcagtttgtgacattaagtttatgaaattctaaaaaatgc cttttttggagactatattatgctgaagaaggctgttcgt gaggaggagatgcgagcacccagaacgtcttttgaggctg ggcgggtgtgattgtttactgcctactggatttttttcta ttaacattgaaaggtaaaatctgattatttagcatgagaa aaaaaaatccaactctgcttttggtcttgcttctataaat atatagtgtatacttggtgtagactttgcatatatacaaa tttgtagtattttcttgttttgatgtctaatctgtatcta taatgtaccctagtagtcgaacatacttttgattgtacaa ttgtacatttgtatacctgtaatgtaaatgtggagaagtt tgaatcaacataaacacgttttttggtaagaaaagagaat tagccagccctgtgcattcagtgtatattctcacctttta tggtcgtagcatatagtgttgtatattgtaaattgtaatt tcaaccagaagtaaatttttttcttttgaaggaataaatg ttctttatacagcctagttaatgtttaaaaagaaaaaaat agcttggttttatttgtcatctagtctcaagtatagcgag attctttctaaatgttattcaagattgagttctcactagt gtttttttaatcctaaaaaagtaatgttttgattttgtga cagtcaaaaggacgtgcaaaagtctagccttgcccgagct ttccttacaatcagagcccctctcaccttgtaaagtgtga atcgcccttcccttttgtacagaagatgaactgtattttg cattttgtctacttgtaagtgaatgtaacatactgtcaat tttccttgtttgaatatagaattgtaacactacacggtgt acatttccagagccttgtgtatatttccaatgaacttttt tgcaagcacacttgtaaccatatgtgtataattaacaaac ctgtgtatgcttatgcctgggcaactattttttgtaactc ttgtgtagattgtctctaaacaatgtgtgatctttatttt gaaaaatacagaactttggaatctgaaaaaaaaaaaaaaa aaaaaaaaaaaaaaaa ACTB NM_001101.4 gagtgagcggcgcggggccaatcagcgtgcgccgttccga 19 aagttgccttttatggctcgagcggccgcggcggcgccct ataaaacccagcggcgcgacgcgccaccaccgccgagacc gcgtccgccccgcgagcacagagcctcgcctttgccgatc cgccgcccgtccacacccgccgccagctcaccatggatga tgatatcgccgcgctcgtcgtcgacaacggctccggcatg tgcaaggccggcttcgcgggcgacgatgccccccgggccg tcttcccctccatcgtggggcgccccaggcaccagggcgt gatggtgggcatgggtcagaaggattcctatgtgggcgac gaggcccagagcaagagaggcatcctcaccctgaagtacc ccatcgagcacggcatcgtcaccaactgggacgacatgga gaaaatctggcaccacaccttctacaatgagctgcgtgtg gctcccgaggagcaccccgtgctgctgaccgaggcccccc tgaaccccaaggccaaccgcgagaagatgacccagatcat gtttgagaccttcaacaccccagccatgtacgttgctatc caggctgtgctatccctgtacgcctctggccgtaccactg gcatcgtgatggactccggtgacggggtcacccacactgt gcccatctacgaggggtatgccctcccccatgccatcctg cgtctggacctggctggccgggacctgactgactacctca tgaagatcctcaccgagcgcggctacagcttcaccaccac ggccgagcgggaaatcgtgcgtgacattaaggagaagctg tgctacgtcgccctggacttcgagcaagagatggccacgg ctgcttccagctcctccctggagaagagctacgagctgcc tgacggccaggtcatcaccattggcaatgagcggttccgc tgccctgaggcactcttccagccttccttcctgggcatgg agtcctgtggcatccacgaaactaccttcaactccatcat gaagtgtgacgtggacatccgcaaagacctgtacgccaac acagtgctgtctggcggcaccaccatgtaccctggcattg ccgacaggatgcagaaggagatcactgccctggcacccag cacaatgaagatcaagatcattgctcctcctgagcgcaag tactccgtgtggatcggcggctccatcctggcctcgctgt ccaccttccagcagatgtggatcagcaagcaggagtatga cgagtccggcccctccatcgtccaccgcaaatgcttctag gcggactatgacttagttgcgttacaccctttcttgacaa aacctaacttgcgcagaaaacaagatgagattggcatggc tttatttgttttttttgttttgttttggtttttttttttt ttttggcttgactcaggatttaaaaactggaacggtgaag gtgacagcagtcggttggagcgagcatcccccaaagttca caatgtggccgaggactttgattgcacattgttgtttttt taatagtcattccaaatatgagatgcgttgttacaggaag tcccttgccatcctaaaagccaccccacttctctctaagg agaatggcccagtcctctcccaagtccacacaggggaggt gatagcattgctttcgtgtaaattatgtaatgcaaaattt ttttaatcttcgccttaatacttttttattttgttttatt ttgaatgatgagccttcgtgcccccccttccccctttttt gtcccccaacttgagatgtatgaaggcttttggtctccct gggagtgggtggaggcagccagggcttacctgtacactga cttgagaccagttgaataaaagtgcacaccttaaaaatga ggaaaaaaaaaaaaaaaaaa GAPD NM_002046.6 gctctctgctcctcctgttcgacagtcagccgcatcttct 20 tttgcgtcgccagccgagccacatcgctcagacaccatgg ggaaggtgaaggtcggagtcaacggatttggtcgtattgg gcgcctggtcaccagggctgcttttaactctggtaaagtg gatattgttgccatcaatgaccccttcattgacctcaact acatggtttacatgttccaatatgattccacccatggcaa attccatggcaccgtcaaggctgagaacgggaagcttgtc atcaatggaaatcccatcaccatcttccaggagcgagatc cctccaaaatcaagtggggcgatgctggcgctgagtacgt cgtggagtccactggcgtcttcaccaccatggagaaggct ggggctcatttgcaggggggagccaaaagggtcatcatct ctgccccctctgctgatgcccccatgttcgtcatgggtgt gaaccatgagaagtatgacaacagcctcaagatcatcagc aatgcctcctgcaccaccaactgcttagcacccctggcca aggtcatccatgacaactttggtatcgtggaaggactcat gaccacagtccatgccatcactgccacccagaagactgtg gatggcccctccgggaaactgtggcgtgatggccgcgggg ctctccagaacatcatccctgcctctactggcgctgccaa ggctgtgggcaaggtcatccctgagctgaacgggaagctc actggcatggccttccgtgtccccactgccaacgtgtcag tggtggacctgacctgccgtctagaaaaacctgccaaata tgatgacatcaagaaggtggtgaagcaggcgtcggagggc cccctcaagggcatcctgggctacactgagcaccaggtgg tctcctctgacttcaacagcgacacccactcctccacctt tgacgctggggctggcattgccctcaacgaccactttgtc aagctcatttcctggtatgacaacgaatttggctacagca acagggtggtggacctcatggcccacatggcctccaagga gtaagacccctggaccaccagccccagcaagagcacaaga ggaagagagagaccctcactgctggggagtccctgccaca ctcagtcccccaccacactgaatctcccctcctcacagtt gccatgtagaccccttgaagaggggaggggcctagggagc cgcaccttgtcatgtaccatcaataaagtaccctgtgctc aaccagttaaaaaaaaaaaaaaaaaaaaa GUSB NM_000181.3 gtcctcaaccaagatggcgcggatggcttcaggcgcatca 21 cgacaccggcgcgtcacgcgacccgccctacgggcacctc ccgcgcttttcttagcgccgcagacggtggccgagcgggg gaccgggaagcatggcccgggggtcggcggttgcctgggc ggcgctcgggccgttgttgtggggctgcgcgctggggctg cagggcgggatgctgtacccccaggagagcccgtcgcggg agtgcaaggagctggacggcctctggagcttccgcgccga cttctctgacaaccgacgccggggcttcgaggagcagtgg taccggcggccgctgtgggagtcaggccccaccgtggaca tgccagttccctccagcttcaatgacatcagccaggactg gcgtctgcggcattttgtcggctgggtgtggtacgaacgg gaggtgatcctgccggagcgatggacccaggacctgcgca caagagtggtgctgaggattggcagtgcccattcctatgc catcgtgtgggtgaatggggtcgacacgctagagcatgag gggggctacctccccttcgaggccgacatcagcaacctgg tccaggtggggcccctgccctcccggctccgaatcactat cgccatcaacaacacactcacccccaccaccctgccacca gggaccatccaatacctgactgacacctccaagtatccca agggttactttgtccagaacacatattttgactttttcaa ctacgctggactgcagcggtctgtacttctgtacacgaca cccaccacctacatcgatgacatcaccgtcaccaccagcg tggagcaagacagtgggctggtgaattaccagatctctgt caagggcagtaacctgttcaagttggaagtgcgtcttttg gatgcagaaaacaaagtcgtggcgaatgggactgggaccc agggccaacttaaggtgccaggtgtcagcctctggtggcc gtacctgatgcacgaacgccctgcctatctgtattcattg gaggtgcagctgactgcacagacgtcactggggcctgtgt ctgacttctacacactccctgtggggatccgcactgtggc tgtcaccaagagccagttcctcatcaatgggaaacctttc tatttccacggtgtcaacaagcatgaggatgcggacatcc gagggaagggcttcgactggccgctgctggtgaaggactt caacctgcttcgctggcttggtgccaacgctttccgtacc agccactacccctatgcagaggaagtgatgcagatgtgtg accgctatgggattgtggtcatcgatgagtgtcccggcgt gggcctggcgctgccgcagttcttcaacaacgtttctctg catcaccacatgcaggtgatggaagaagtggtgcgtaggg acaagaaccaccccgcggtcgtgatgtggtctgtggccaa cgagcctgcgtcccacctagaatctgctggctactacttg aagatggtgatcgctcacaccaaatccttggacccctccc ggcctgtgacctttgtgagcaactctaactatgcagcaga caagggggctccgtatgtggatgtgatctgtttgaacagc tactactcttggtatcacgactacgggcacctggagttga ttcagctgcagctggccacccagtttgagaactggtataa gaagtatcagaagcccattattcagagcgagtatggagca gaaacgattgcagggtttcaccaggatccacctctgatgt tcactgaagagtaccagaaaagtctgctagagcagtacca tctgggtctggatcaaaaacgcagaaaatacgtggttgga gagctcatttggaattttgccgatttcatgactgaacagt caccgacgagagtgctggggaataaaaaggggatcttcac tcggcagagacaaccaaaaagtgcagcgttccttttgcga gagagatactggaagattgccaatgaaaccaggtatcccc actcagtagccaagtcacaatgtttggaaaacagcctgtt tacttgagcaagactgataccacctgcgtgtcccttcctc cccgagtcagggcgacttccacagcagcagaacaagtgcc tcctggactgttcacggcagaccagaacgtttctggcctg ggttttgtggtcatctattctagcagggaacactaaaggt ggaaataaaagattttctattatggaaataaagagttggc atgaaagtggctactgaaaaaaaaaaaaaaaaaaaaaaaa a RPLP0 NM_001002.3 gtctgacgggcgatggcgcagccaatagacaggagcgcta 22 tccgcggtttctgattggctactttgttcgcattataaaa ggcacgcgcgggcgcgaggcccttctctcgccaggcgtcc tcgtggaagtgacatcgtctttaaaccctgcgtggcaatc cctgacgcaccgccgtgatgcccagggaagacagggcgac ctggaagtccaactacttccttaagatcatccaactattg gatgattatccgaaatgtttcattgtgggagcagacaatg tgggctccaagcagatgcagcagatccgcatgtcccttcg cgggaaggctgtggtgctgatgggcaagaacaccatgatg cgcaaggccatccgagggcacctggaaaacaacccagctc tggagaaactgctgcctcatatccgggggaatgtgggctt tgtgttcaccaaggaggacctcactgagatcagggacatg ttgctggccaataaggtgccagctgctgcccgtgctggtg ccattgccccatgtgaagtcactgtgccagcccagaacac tggtctcgggcccgagaagacctcctttttccaggcttta ggtatcaccactaaaatctccaggggcaccattgaaatcc tgagtgatgtgcagctgatcaagactggagacaaagtggg agccagcgaagccacgctgctgaacatgctcaacatctcc cccttctcctttgggctggtcatccagcaggtgttcgaca atggcagcatctacaaccctgaagtgcttgatatcacaga ggaaactctgcattctcgcttcctggagggtgtccgcaat gttgccagtgtctgtctgcagattggctacccaactgttg catcagtaccccattctatcatcaacgggtacaaacgagt cctggccttgtctgtggagacggattacaccttcccactt gctgaaaaggtcaaggccttcttggctgatccatctgcct ttgtggctgctgcccctgtggctgctgccaccacagctgc tcctgctgctgctgcagccccagctaaggttgaagccaag gaagagtcggaggagtcggacgaggatatgggatttggtc tctttgactaatcaccaaaaagcaaccaacttagccagtt ttatttgcaaaacaaggaaataaaggcttacttctttaaa aagtaaaaaaaaaaaaaaaaaaaaaaaaa TFRC NM_003234.3 agagcgtcgggatatcgggtggcggctcgggacggaggac 23 gcgctagtgtgagtgcgggcttctagaactacaccgaccc tcgtgtcctcccttcatcctgcggggctggctggagcggc cgctccggtgctgtccagcagccatagggagccgcacggg gagcgggaaagcggtcgcggccccaggcggggcggccggg atggagcggggccgcgagcctgtggggaaggggctgtggc ggcgcctcgagcggctgcaggttcttctgtgtggcagttc agaatgatggatcaagctagatcagcattctctaacttgt ttggtggagaaccattgtcatatacccggttcagcctggc tcggcaagtagatggcgataacagtcatgtggagatgaaa cttgctgtagatgaagaagaaaatgctgacaataacacaa aggccaatgtcacaaaaccaaaaaggtgtagtggaagtat ctgctatgggactattgctgtgatcgtctttttcttgatt ggatttatgattggctacttgggctattgtaaaggggtag aaccaaaaactgagtgtgagagactggcaggaaccgagtc tccagtgagggaggagccaggagaggacttccctgcagca cgtcgcttatattgggatgacctgaagagaaagttgtcgg agaaactggacagcacagacttcaccggcaccatcaagct gctgaatgaaaattcatatgtccctcgtgaggctggatct caaaaagatgaaaatcttgcgttgtatgttgaaaatcaat ttcgtgaatttaaactcagcaaagtctggcgtgatcaaca ttttgttaagattcaggtcaaagacagcgctcaaaactcg gtgatcatagttgataagaacggtagacttgtttacctgg tggagaatcctgggggttatgtggcgtatagtaaggctgc aacagttactggtaaactggtccatgctaattttggtact aaaaaagattttgaggatttatacactcctgtgaatggat ctatagtgattgtcagagcagggaaaatcacctttgcaga aaaggttgcaaatgctgaaagcttaaatgcaattggtgtg ttgatatacatggaccagactaaatttcccattgttaacg cagaactttcattctttggacatgctcatctggggacagg tgacccttacacacctggattcccttccttcaatcacact cagtttccaccatctcggtcatcaggattgcctaatatac ctgtccagacaatctccagagctgctgcagaaaagctgtt tgggaatatggaaggagactgtccctctgactggaaaaca gactctacatgtaggatggtaacctcagaaagcaagaatg tgaagctcactgtgagcaatgtgctgaaagagataaaaat tcttaacatctttggagttattaaaggctttgtagaacca gatcactatgttgtagttggggcccagagagatgcatggg gccctggagctgcaaaatccggtgtaggcacagctctcct attgaaacttgcccagatgttctcagatatggtcttaaaa gatgggtttcagcccagcagaagcattatctttgccagtt ggagtgctggagactttggatcggttggtgccactgaatg gctagagggatacctttcgtccctgcatttaaaggctttc acttatattaatctggataaagcggttcttggtaccagca acttcaaggtttctgccagcccactgttgtatacgcttat tgagaaaacaatgcaaaatgtgaagcatccggttactggg caatttctatatcaggacagcaactgggccagcaaagttg agaaactcactttagacaatgctgctttccctttccttgc atattctggaatcccagcagtttctttctgtttttgcgag gacacagattatccttatttgggtaccaccatggacacct ataaggaactgattgagaggattcctgagttgaacaaagt ggcacgagcagctgcagaggtcgctggtcagttcgtgatt aaactaacccatgatgttgaattgaacctggactatgaga ggtacaacagccaactgctttcatttgtgagggatctgaa ccaatacagagcagacataaaggaaatgggcctgagttta cagtggctgtattctgctcgtggagacttcttccgtgcta cttccagactaacaacagatttcgggaatgctgagaaaac agacagatttgtcatgaagaaactcaatgatcgtgtcatg agagtggagtatcacttcctctctccctacgtatctccaa aagagtctcctttccgacatgtcttctggggctccggctc tcacacgctgccagctttactggagaacttgaaactgcgt aaacaaaataacggtgcttttaatgaaacgctgttcagaa accagttggctctagctacttggactattcagggagctgc aaatgccctctctggtgacgtttgggacattgacaatgag ttttaaatgtgatacccatagcttccatgagaacagcagg gtagtctggtttctagacttgtgctgatcgtgctaaattt tcagtagggctacaaaacctgatgttaaaattccatccca tcatcttggtactactagatgtctttaggcagcagctttt aatacagggtagataacctgtacttcaagttaaagtgaat aaccacttaaaaaatgtccatgatggaatattcccctatc tctagaattttaagtgctttgtaatgggaactgcctcttt cctgttgttgttaatgaaaatgtcagaaaccagttatgtg aatgatctctctgaatcctaagggctggtctctgctgaag gttgtaagtggtcgcttactttgagtgatcctccaacttc atttgatgctaaataggagataccaggttgaaagaccttc tccaaatgagatctaagcctttccataaggaatgtagctg gtttcctcattcctgaaagaaacagttaactttcagaaga gatgggcttgttttcttgccaatgaggtctgaaatggagg tccttctgctggataaaatgaggttcaactgttgattgca ggaataaggccttaatatgttaacctcagtgtcatttatg aaaagaggggaccagaagccaaagacttagtatattttct tttcctctgtcccttcccccataagcctccatttagttct ttgttatttttgtttcttccaaagcacattgaaagagaac cagtttcaggtgtttagttgcagactcagtttgtcagact ttaaagaataatatgctgccaaattttggccaaagtgtta atcttaggggagagctttctgtccttttggcactgagata tttattgtttatttatcagtgacagagttcactataaatg gtgtttttttaatagaatataattatcggaagcagtgcct tccataattatgacagttatactgtcggttttttttaaat aaaagcagcatctgctaataaaacccaacagatactggaa gttttgcatttatggtcaacacttaagggttttagaaaac agccgtcagccaaatgtaattgaataaagttgaagctaag atttagagatgaattaaatttaattaggggttgctaagaa gcgagcactgaccagataagaatgctggttttcctaaatg cagtgaattgtgaccaagttataaatcaatgtcacttaaa ggctgtggtagtactcctgcaaaattttatagctcagttt atccaaggtgtaactctaattcccattttgcaaaatttcc agtacctttgtcacaatcctaacacattatcgggagcagt gtcttccataatgtataaagaacaaggtagtttttaccta ccacagtgtctgtatcggagacagtgatctccatatgtta cactaagggtgtaagtaattatcgggaacagtgtttccca taattttcttcatgcaatgacatcttcaaagcttgaagat cgttagtatctaacatgtatcccaactcctataattccct atcttttagttttagttgcagaaacattttgtggtcatta agcattgggtgggtaaattcaaccactgtaaaatgaaatt actacaaaatttgaaatttagcttgggtttttgttacctt tatggtttctccaggtcctctacttaatgagatagtagca tacatttataatgtttgctattgacaagtcattttaactt tatcacattatttgcatgttacctcctataaacttagtgc ggacaagttttaatccagaattgaccttttgacttaaagc agagggactttgtatagaaggtttgggggctgtggggaag gagagtcccctgaaggtctgacacgtctgcctacccattc gtggtgatcaattaaatgtaggtatgaataagttcgaagc tccgtgagtgaaccatcattataaacgtgatgatcagctg tttgtcatagggcagttggaaacggcctcctagggaaaag ttcatagggtctcttcaggttcttagtgtcacttacctag atttacagcctcacttgaatgtgtcactactcacagtctc tttaatcttcagttttatctttaatctcctcttttatctt ggactgacatttagcgtagctaagtgaaaaggtcatagct gagattcctggttcgggtgttacgcacacgtacttaaatg aaagcatgtggcatgttcatcgtataacacaatatgaata cagggcatgcattttgcagcagtgagtctcttcagaaaac ccttttctacagttagggttgagttacttcctatcaagcc agtacgtgctaacaggctcaatattcctgaatgaaatatc agactagtgacaagctcctggtcttgagatgtcttctcgt taaggagatgggccttttggaggtaaaggataaaatgaat gagttctgtcatgattcactattctagaacttgcatgacc tttactgtgttagctctttgaatgttcttgaaattttaga ctttctttgtaaacaaatgatatgtccttatcattgtata aaagctgttatgtgcaacagtgtggagattccttgtctga tttaataaaatacttaaacactgaaaaaaaaaaa 18S X03205.1 tacctggttgatcctgccagtagcatatgcttgtctcaaa 24 gattaagccatgcatgtctaagtacgcacggccggtacag tgaaactgcgaatggctcattaaatcagttatggttcctt tggtcgctcgctcctctcccacttggataactgtggtaat tctagagctaatacatgccgacgggcgctgacccccttcg cgggggggatgcgtgcatttatcagatcaaaaccaacccg gtcagcccctctccggccccggccggggggcgggcgccgg cggctttggtgactctagataacctcgggccgatcgcacg ccccccgtggcggcgacgacccattcgaacgtctgcccta tcaactttcgatggtagtcgccgtgcctaccatggtgacc acgggtgacggggaatcagggttcgattccggagagggag cctgagaaacggctaccacatccaaggaaggcagcaggcg cgcaaattacccactcccgacccggggaggtagtgacgaa aaataacaatacaggactctttcgaggccctgtaattgga atgagtccactttaaatcctttaacgaggatccattggag ggcaagtctggtgccagcagccgcggtaattccagctcca atagcgtatattaaagttgctgcagttaaaaagctcgtag ttggatcttgggagcgggcgggcggtccgccgcgaggcga gccaccgcccgtccccgccccttgcctctcggcgccccct cgatgctcttagctgagtgtcccgcggggcccgaagcgtt tactttgaaaaaattagagtgttcaaagcaggcccgagcc gcctggataccgcagctaggaataatggaataggaccgcg gttctattttgttggttttcggaactgaggccatgattaa gagggacggccgggggcattcgtattgcgccgctagaggt gaaattcttggaccggcgcaagacggaccagagcgaaagc atttgccaagaatgttttcattaatcaagaacgaaagtcg gaggttcgaagacgatcagataccgtcgtagttccgacca taaacgatgccgaccggcgatgcggcggcgttattcccat gaccegccgggcagcttccgggaaaccaaagtctttgggt tccggggggagtatggttgcaaagctgaaacttaaaggaa ttgacggaagggcaccaccaggagtggagcctgcggctta atttgactcaacacgggaaacctcacccggcccggacacg gacaggattgacagattgatagctctttctcgattccgtg ggtggtggtgcatggccgttcttagttggtggagcgattt gtctggttaattccgataacgaacgagactctggcatgct aactagttacgcgacccccgagcggtcggcgtcccccaac ttcttagagggacaagtggcgttcagccacccgagattga gcaataacaggtctgtgatgcccttagatgtccggggctg cacgcgcgctacactgactggctcagcgtgtgcctaccct acgccggcaggcgcgggtaacccgttgaaccccattcgtg atggggatcggggattgcaattattccccatgaacgagga attcccagtaagtgcgggtcataagcttgcgttgattaag tccctgccctttgtacacaccgcccgtcgctactaccgat tggatggtttagtgaggccctcggatcggccccgccgggg tcggcccacggccctggcggagcgctgagaagacggtcga acttgactatctagaggaagtaaaagtcgtaacaaggttt ccgtaggtgaacctgcggaaggatcatta PPIA NM_021130.4 ggggccgaacgtggtataaaaggggcgggaggccaggctc 25 gtgccgttttgcagacgccaccgccgaggaaaaccgtgta ctattagccatggtcaaccccaccgtgttcttcgacattg ccgtcgacggcgagcccttgggccgcgtctcctttgagct gtttgcagacaaggtcccaaagacagcagaaaattttcgt gctctgagcactggagagaaaggatttggttataagggtt cctgctttcacagaattattccagggtttatgtgtcaggg tggtgacttcacacgccataatggcactggtggcaagtcc atctatggggagaaatttgaagatgagaacttcatcctaa agcatacgggtcctggcatcttgtccatggcaaatgctgg acccaacacaaatggttcccagtttttcatctgcactgcc aagactgagtggttggatggcaagcatgtggtgtttggca aagtgaaagaaggcatgaatattgtggaggccatggagcg ctttgggtccaggaatggcaagaccagcaagaagatcacc attgctgactgtggacaactcgaataagtttgacttgtgt tttatcttaaccaccagatcattccttctgtagctcagga gagcacccctccaccccatttgctcgcagtatcctagaat ctttgtgctctcgctgcagttccctttgggttccatgttt tccttgttccctcccatgcctagctggattgcagagttaa gtttatgattatgaaataaaaactaaataacaattgtcct cgtttgagttaagagtgttgatgtaggctttattttaagc agtaatgggttacttctgaaacatcacttgtttgcttaat tctacacagtacttagattttttttactttccagtcccag gaagtgtcaatgtttgttgagtggaatattgaaaatgtag gcagcaactgggcatggtggctcactgtctgtaatgtatt acctgaggcagaagaccacctgagggtaggagtcaagatc agcctgggcaacatagtgagacgctgtctctacaaaaaat aattagcctggcctggtggtgcatgcctagtcctagctga tctggaggctgacgtgggaggattgcttgagcctagagtg agctattatcatgccactgtacagcctgggtgttcacaga tcttgtgtctcaaaggtaggcagaggcaggaaaagcaagg agccagaattaagaggttgggtcagtctgcagtgagttca tgcatttagaggtgttcttcaagatgactaatgtcaaaaa ttgagacatctgttgcggttttttttttttttttttcccc tggaatgcagtggcgtgatctcagctcactgcagcctccg cctcctgggttcaagtgattctagtgcctcagcctcctga gtagctgggataatgggcgtgtgccaccatgcccagctaa tttttgtatttttagtatagatggggtttcatcattttga ccaggctggtctcaaactcttgacctcagctgatgcgcct gccttggcctcccaaactgctgagattacagatgtgagcc accgcaccctacctcattttctgtaacaaagctaagcttg aacactgttgatgttcttgagggaagcatattgggcttta ggctgtaggtcaagtttatacatcttaattatggtggaat tcctatgtagagtctaaaaagccaggtacttggtgctaca gtcagtctccctgcagagggttaaggcgcagactacctgc agtgaggaggtactgcttgtagcatatagagcctctccct agctttggttatggaggctttgaggttttgcaaacctgac caatttaagccataagatctggtcaaagggatacccttcc cactaaggacttggtttctcaggaaattatatgtacagtg cttgctggcagttagatgtcaggacaatctaagctgagaa aaccccttctctgcccaccttaacagacctctagggttct taacccagcaatcaagtttgcctatcctagaggtggcgga tttgatcatttggtgtgttgggcaatttttgttttactgt ctggttccttctgcgtgaattaccaccaccaccacttgtg catctcagtcttgtgtgttgtctggttacgtattccctgg gtgataccattcaatgtcttaatgtacttgtggctcagac ctgagtgcaaggtggaaataaacatcaaacatcttttcat tatcccta PGK1 NM_000291.3 gagagcagcggccgggaaggggcggtgcgggaggcggggt 26 gtggggcggtagtgtgggccctgttcctgcccgcgcggtg ttccgcattctgcaagcctccggagcgcacgtcggcagtc ggctccctcgttgaccgaatcaccgacctctctccccagc tgtatttccaaaatgtcgctttctaacaagctgacgctgg acaagctggacgttaaagggaagcgggtcgttatgagagt cgacttcaatgttcctatgaagaacaaccagataacaaac aaccagaggattaaggctgctgtcccaagcatcaaattct gcttggacaatggagccaagtcggtagtccttatgagcca cctaggccggcctgatggtgtgcccatgcctgacaagtac tccttagagccagttgctgtagaactcaaatctctgctgg gcaaggatgttctgttcttgaaggactgtgtaggcccaga agtggagaaagcctgtgccaacccagctgctgggtctgtc atcctgctggagaacctccgctttcatgtggaggaagaag ggaagggaaaagatgcttctgggaacaaggttaaagccga gccagccaaaatagaagctttccgagcttcactttccaag ctaggggatgtctatgtcaatgatgcttttggcactgctc acagagcccacagctccatggtaggagtcaatctgccaca gaaggctggtgggtttttgatgaagaaggagctgaactac tttgcaaaggccttggagagcccagagcgacccttcctgg ccatcctgggcggagctaaagttgcagacaagatccagct catcaataatatgctggacaaagtcaatgagatgattatt ggtggtggaatggcttttaccttccttaaggtgctcaaca acatggagattggcacttctctgtttgatgaagagggagc caagattgtcaaagacctaatgtccaaagctgagaagaat ggtgtgaagattaccttgcctgttgactttgtcactgctg acaagtttgatgagaatgccaagactggccaagccactgt ggcttctggcatacctgctggctggatgggcttggactgt ggtcctgaaagcagcaagaagtatgctgaggctgtcactc gggctaagcagattgtgtggaatggtcctgtgggggtatt tgaatgggaagcttttgcccggggaaccaaagctctcatg gatgaggtggtgaaagccacttctaggggctgcatcacca tcataggtggtggagacactgccacttgctgtgccaaatg gaacacggaggataaagtcagccatgtgagcactgggggt ggtgccagtttggagctcctggaaggtaaagtccttcctg gggtggatgctctcagcaatatttagtactttcctgcctt ttagttcctgtgcacagcccctaagtcaacttagcatttt ctgcatctccacttggcattagctaaaaccttccatgtca agattcagctagtggccaagagatgcagtgccaggaaccc ttaaacagttgcacagcatctcagctcatcttcactgcac cctggatttgcatacattcttcaagatcccatttgaattt tttagtgactaaaccattgtgcattctagagtgcatatat ttatattttgcctgttaaaaagaaagtgagcagtgttagc ttagttctcttttgatgtaggttattatgattagctttgt cactgtttcactactcagcatggaaacaagatgaaattcc atttgtaggtagtgagacaaaattgatgatccattaagta aacaataaaagtgtccattgaaaccgtgattttttttttt ttcctgtcatactttgttaggaagggtgagaatagaatct tgaggaacggatcagatgtctatattgctgaatgcaagaa gtggggcagcagcagtggagagatgggacaattagataaa tgtccattctttatcaagggcctactttatggcagacatt gtgctagtgcttttattctaacttttatttttatcagtta cacatgatcataatttaaaaagtcaaggcttataacaaaa aagccccagcccattcctcccattcaagattcccactccc cagaggtgaccactttcaactcttgagtttttcaggtata tacctccatgtttctaagtaatatgcttatattgttcact tcttttttttttattttttaaagaaatctatttcatacca tggaggaaggctctgttccacatatatttccacttcttca ttctctcggtatagttttgtcacaattatagattagatca aaagtctacataactaatacagctgagctatgtagtatgc tatgattaaatttacttatgtaaaaaaaaaaaaaaaaaa RPL13A NM_012423.3 cacttctgccgcccctgtttcaagggataagaaaccctgc 27 gacaaaacctcctccttttccaagcggctgccgaagatgg cggaggtgcaggtcctggtgcttgatggtcgaggccatct cctgggccgcctggcggccatcgtggctaaacaggtactg ctgggccggaaggtggtggtcgtacgctgtgaaggcatca acatttctggcaatttctacagaaacaagttgaagtacct ggctttcctccgcaagcggatgaacaccaacccttcccga ggcccctaccacttccgggcccccagccgcatcttctggc ggaccgtgcgaggtatgctgccccacaaaaccaagcgagg ccaggccgctctggaccgtctcaaggtgtttgacggcatc ccaccgccctacgacaagaaaaagcggatggtggttcctg ctgccctcaaggtcgtgcgtctgaagcctacaagaaagtt tgcctatctggggcgcctggctcacgaggttggctggaag taccaggcagtgacagccaccctggaggagaagaggaaag agaaagccaagatccactaccggaagaagaaacagctcat gaggctacggaaacaggccgagaagaacgtggagaagaaa attgacaaatacacagaggtcctcaagacccacggactcc tggtctgagcccaataaagactgttaattcctcatgcgtt gcctgcccttcctccattgttgccctggaatgtacgggac ccaggggcagcagcagtccaggtgccacaggcagccctgg gacataggaagctgggagcaaggaaagggtcttagtcact gcctcccgaagttgcttgaaagcactcggagaattgtgca ggtgtcatttatctatgaccaataggaagagcaaccagtt actatgagtgaaagggagccagaagactgattggagggcc ctatcttgtgagtggggcatctgttggactttccacctgg tcatatactctgcagctgttagaatgtgcaagcacttggg gacagcatgagcttgctgttgtacacagggtatttctaga agcagaaatagactgggaagatgcacaaccaaggggttac aggcatcgcccatgctcctcacctgtattttgtaatcaga aataaattgcttttaaagaaaaaaaaaaaaaaaaaa B2M NM_004048.2 aatataagtggaggcgtcgcgctggcgggcattcctgaag 28 ctgacagcattcgggccgagatgtctcgctccgtggcctt agctgtgctcgcgctactctctctttctggcctggaggct atccagcgtactccaaagattcaggtttactcacgtcatc cagcagagaatggaaagtcaaatttcctgaattgctatgt gtctgggtttcatccatccgacattgaagttgacttactg aagaatggagagagaattgaaaaagtggagcattcagact tgtctttcagcaaggactggtctttctatctcttgtacta cactgaattcacccccactgaaaaagatgagtatgcctgc cgtgtgaaccatgtgactttgtcacagcccaagatagtta agtgggatcgagacatgtaagcagcatcatggaggtttga agatgccgcatttggattggatgaattccaaattctgctt gcttgctttttaatattgatatgcttatacacttacactt tatgcacaaaatgtagggttataataatgttaacatggac atgatcttctttataattctactttgagtgctgtctccat gtttgatgtatctgagcaggttgctccacaggtagctcta ggagggctggcaacttagaggtggggagcagagaattctc ttatccaacatcaacatcttggtcagatttgaactcttca atctcttgcactcaaagcttgttaagatagttaagcgtgc ataagttaacttccaatttacatactctgcttagaatttg ggggaaaatttagaaatataattgacaggattattggaaa tttgttataatgaatgaaacattttgtcatataagattca tatttacttcttatacatttgataaagtaaggcatggttg tggttaatctggtttatttttgttccacaagttaaataaa tcataaaacttgatgtgttatctctta YWHAZ NM_003406.3 ctttctccttccccttcttccgggctcccgtcccggctca 29 tcacccggcctgtggcccactcccaccgccagctggaacc ctggggactacgacgtccctcaaaccttgcttctaggaga taaaaagaacatccagtcatggataaaaatgagctggttc agaaggccaaactggccgagcaggctgagcgatatgatga catggcagcctgcatgaagtctgtaactgagcaaggagct gaattatccaatgaggagaggaatcttctctcagttgctt ataaaaatgttgtaggagcccgtaggtcatcttggagggt cgtctcaagtattgaacaaaagacggaaggtgctgagaaa aaacagcagatggctcgagaatacagagagaaaattgaga cggagctaagagatatctgcaatgatgtactgtctctttt ggaaaagttcttgatccccaatgcttcacaagcagagagc aaagtcttctatttgaaaatgaaaggagattactaccgtt acttggctgaggttgccgctggtgatgacaagaaagggat tgtcgatcagtcacaacaagcataccaagaagcttttgaa atcagcaaaaaggaaatgcaaccaacacatcctatcagac tgggtctggcccttaacttctctgtgttctattatgagat tctgaactccccagagaaagcctgctctcttgcaaagaca gcttttgatgaagccattgctgaacttgatacattaagtg aagagtcatacaaagacagcacgctaataatgcaattact gagagacaacttgacattgtggacatcggatacccaagga gacgaagctgaagcaggagaaggaggggaaaattaaccgg ccttccaacttttgtctgcctcattctaaaatttacacag tagaccatttgtcatccatgctgtcccacaaatagttttt tgtttacgatttatgacaggtttatgttacttctatttga atttctatatttcccatgtggtttttatgtttaatattag gggagtagagccagttaacatttagggagttatctgtttt catcttgaggtggccaatatggggatgtggaatttttata caagttataagtgtttggcatagtacttttggtacattgt ggcttcaaaagggccagtgtaaaactgcttccatgtctaa gcaaagaaaactgcctacatactggtttgtcctggcgggg aataaaagggatcattggttccagtcacaggtgtagtaat tgtgggtactttaaggtttggagcacttacaaggctgtgg tagaatcataccccatggataccacatattaaaccatgta tatctgtggaatactcaatgtgtacacctttgactacagc tgcagaagtgttcctttagacaaagttgtgacccatttta ctctggataagggcagaaacggttcacattccattatttg taaagttacctgctgttagctttcattatttttgctacac tcattttatttgtatttaaatgttttaggcaacctaagaa caaatgtaaaagtaaagatgcaggaaaaatgaattgcttg gtattcattacttcatgtatatcaagcacagcagtaaaac aaaaacccatgtatttaacttttttttaggatttttgctt ttgtgatttttttttttttgatacttgcctaacatgcatg tgctgtaaaaatagttaacagggaaataacttgagatgat ggctagctttgtttaatgtcttatgaaattttcatgaaca atccaagcataattgttaagaacacgtgtattaaattcat gtaagtggaataaaagttttatgaatggacttttcaacta ctttctctacagcttttcatgtaaattagtcttggttctg aaacttctctaaaggaaattgtacattttttgaaatttat tccttattccctcttggcagctaatgggctcttaccaagt ttaaacacaaaatttatcataacaaaaatactactaatat aactactgtttccatgtcccatgatcccctctcttcctcc ccaccctgaaaaaaatgagttcctattttttctgggagag ggggggattgattagaaaaaaatgtagtgtgttccattta aaattttggcatatggcattttctaacttaggaagccaca atgttcttggcccatcatgacattgggtagcattaactgt aagttttgtgcttccaaatcactttttggtttttaagaat ttcttgatactcttatagcctgccttcaattttgatcctt tattctttctatttgtcaggtgcacaagattaccttcctg ttttagccttctgtcttgtcaccaaccattcttacttggt ggccatgtacttggaaaaaggccgcatgatctttctggct ccactcagtgtctaaggcaccctgcttcctttgcttgcat cccacagactatttccctcatcctatttactgcagcaaat ctctccttagttgatgagactgtgtttatctccctttaaa accctacctatcctgaatggtctgtcattgtctgccttta aaatccttcctctttcttcctcctctattctctaaataat gatggggctaagttatacccaaagctcactttacaaaata tttcctcagtactttgcagaaaacaccaaacaaaaatgcc attttaaaaaaggtgtattttttcttttagaatgtaagct cctcaagagcagggacaatgttttctgtatgttctattgt gcctagtacactgtaaatgctcaataaatattgatgatgg gaggcagtgagtcttgatgataagggtgagaaactgaaat cccaaacactgttttgttgcttgttttattatgacctcag attaaattgggaaatattggcccttttgaataattgtccc aaatattacattcaaataaaagtgcaatggagaaaaaaaa aaa SDHA NM_004168.3 actgcagccccgctcgactccggcgtggtgcgcaggcgcg 30 gtatcccccctcccccgccagctcgaccccggtgtggtgc gcaggcgcagtctgcgcagggactggcgggactgcgcggc ggcaacagcagacatgtcgggggtccggggcctgtcgcgg ctgctgagcgctcggcgcctggcgctggccaaggcgtggc caacagtgttgcaaacaggaacccgaggttttcacttcac tgttgatgggaacaagagggcatctgctaaagtttcagat tccatttctgctcagtatccagtagtggatcatgaatttg atgcagtggtggtaggcgctggaggggcaggcttgcgagc tgcatttggcctttctgaggcagggtttaatacagcatgt gttaccaagctgtttcctaccaggtcacacactgttgcag cacagggaggaatcaatgctgctctggggaacatggagga ggacaactggaggtggcatttctacgacaccgtgaagggc tccgactggctgggggaccaggatgccatccactacatga cggagcaggcccccgccgccgtggtcgagctagaaaatta tggcatgccgtttagcagaactgaagatgggaagatttat cagcgtgcatttggtggacagagcctcaagtttggaaagg gcgggcaggcccatcggtgctgctgtgtggctgatcggac tggccactcgctattgcacaccttatatggaaggtctctg cgatatgataccagctattttgtggagtattttgccttgg atctcctgatggagaatggggagtgccgtggtgtcatcgc actgtgcatagaggacgggtccatccatcgcataagagca aagaacactgttgttgccacaggaggctacgggcgcacct acttcagctgcacgtctgcccacaccagcactggcgacgg cacggccatgatcaccagggcaggccttccttgccaggac ctagagtttgttcagttccaccctacaggcatatatggtg ctggttgtctcattacggaaggatgtcgtggagagggagg cattctcattaacagtcaaggcgaaaggtttatggagcga tacgcccctgtcgcgaaggacctggcgtctagagatgtgg tgtctcggtccatgactctggagatccgagaaggaagagg ctgtggccctgagaaagatcacgtctacctgcagctgcac cacctacctccagagcagctggccacgcgcctgcctggca tttcagagacagccatgatcttcgctggcgtggacgtcac gaaggagccgatccctgtcctccccaccgtgcattataac atgggcggcattcccaccaactacaaggggcaggtcctga ggcacgtgaatggccaggatcagattgtgcccggcctgta cgcctgtggggaggccgcctgtgcctcggtacatggtgcc aaccgcctcggggcaaactcgctcttggacctggttgtct ttggtcgggcatgtgccctgagcatcgaagagtcatgcag gcctggagataaagtccctccaattaaaccaaacgctggg gaagaatctgtcatgaatcttgacaaattgagatttgctg atggaagcataagaacatcggaactgcgactcagcatgca gaagtcaatgcaaaatcatgctgccgtgttccgtgtggga agcgtgttgcaagaaggttgtgggaaaatcagcaagctct atggagacctaaagcacctgaagacgttcgaccggggaat ggtctggaacacggacctggtggagaccctggagctgcag aacctgatgctgtgtgcgctgcagaccatctacggagcag aggcacggaaggagtcacggggcgcgcatgccagggaaga ctacaaggtgcggattgatgagtacgattactccaagccc atccaggggcaacagaagaagccctttgaggagcactgga ggaagcacaccctgtcctatgtggacgttggcactgggaa ggtcactctggaatatagacccgtgatcgacaaaactttg aacgaggctgactgtgccaccgtcccgccagccattcgct cctactgatgagacaagatgtggtgatgacagaatcagct tttgtaattatgtataatagctcatgcatgtgtccatgtc ataactgtcttcatacgcttctgcactctggggaagaagg agtacattgaagggagattggcacctagtggctgggagct tgccaggaacccagtggccagggagcgtggcacttacctt tgtcccttgcttcattcttgtgagatgataaaactgggca cagctcttaaataaaatataaatgaacaaactttctttta tttccaaatccatttgaaatattttactgttgtgacttta gtcatatttgttgacctaaaaatcaaatgtaatctttgta ttgtgttacatcaaaatccagatattttgtatagtttctt ttttctttttcttttcttttttttttttgagacaggatcg gtgcagtagtacaatcacagctcactgcagcctcaaactc ctgggcagctcaggtgatcttcctgactcagccttctgag tagttggggctacaggtgtgcaccaccatgcccagctcat ttattttgtaattgtagggacagggtctcactgtgttgcc taggctggtctcaagtgatcctccctccttggcctcccaa ggtgctggaattataggtgtgaacaaaccaaaaaaaaaaa aaa HPRT1 NM_000194.2 ggcggggcctgcttctcctcagcttcaggcggctgcgacg 31 agccctcaggcgaacctctcggctttcccgcgcggcgccg cctcttgctgcgcctccgcctcctcctctgctccgccacc ggcttcctcctcctgagcagtcagcccgcgcgccggccgg ctccgttatggcgacccgcagccctggcgtcgtgattagt gatgatgaaccaggttatgaccttgatttattttgcatac ctaatcattatgctgaggatttggaaagggtgtttattcc tcatggactaattatggacaggactgaacgtcttgctcga gatgtgatgaaggagatgggaggccatcacattgtagccc tctgtgtgctcaaggggggctataaattctttgctgacct gctggattacatcaaagcactgaatagaaatagtgataga tccattcctatgactgtagattttatcagactgaagagct attgtaatgaccagtcaacaggggacataaaagtaattgg tggagatgatctctcaactttaactggaaagaatgtcttg attgtggaagatataattgacactggcaaaacaatgcaga ctttgctttccttggtcaggcagtataatccaaagatggt caaggtcgcaagcttgctggtgaaaaggaccccacgaagt gttggatataagccagactttgttggatttgaaattccag acaagtttgttgtaggatatgcccttgactataatgaata cttcagggatttgaatcatgtttgtgtcattagtgaaact ggaaaagcaaaatacaaagcctaagatgagagttcaagtt gagtttggaaacatctggagtcctattgacatcgccagta aaattatcaatgttctagttctgtggccatctgcttagta gagctttttgcatgtatcttctaagaattttatctgtttt gtactttagaaatgtcagttgctgcattcctaaactgttt atttgcactatgagcctatagactatcagttccctttggg cggattgttgtttaacttgtaaatgaaaaaattctcttaa accacagcactattgagtgaaacattgaactcatatctgt aagaaataaagagaagatatattagttttttaattggtat tttaatttttatatatgcaggaaagaatagaagtgattga atattgttaattataccaccgtgtgttagaaaagtaagaa gcagtcaattttcacatcaaagacagcatctaagaagttt tgttctgtcctggaattattttagtagtgtttcagtaatg ttgactgtattttccaacttgttcaaattattaccagtga atctttgtcagcagttcccttttaaatgcaaatcaataaa ttcccaaaaatttaaaaaaaaaaaaaaaaaaaaaa

Definitions

[0107] The articles “a” and “an” are used in this disclosure to refer to one or more than one (i.e., to at least one) of the grammatical object of the article. By way of example, “an element” means one element or more than one element.

[0108] The term “and/or” is used in this disclosure to mean either “and” or “or” unless indicated otherwise.

[0109] As used herein, the terms “polynucleotide” and “nucleic acid molecule” are used interchangeably to mean a polymeric form of nucleotides of at least 10 bases or base pairs in length, either ribonucleotides or deoxynucleotides or a modified form of either type of nucleotide, and is meant to include single and double stranded forms of DNA. As used herein, a nucleic acid molecule or nucleic acid sequence that serves as a probe in a microarray analysis preferably comprises a chain of nucleotides, more preferably DNA and/or RNA. In other aspects, a nucleic acid molecule or nucleic acid sequence comprises other kinds of nucleic acid structures such a for instance a DNA/RNA helix, peptide nucleic acid (PNA), locked nucleic acid (LNA) and/or a ribozyme. Hence, as used herein the term “nucleic acid molecule” also encompasses a chain comprising non-natural nucleotides, modified nucleotides and/or non-nucleotide building blocks which exhibit the same function as natural nucleotides.

[0110] As used herein, the terms “hybridize,” “hybridizing”, “hybridizes,” and the like, used in the context of polynucleotides, are meant to refer to conventional hybridization conditions, such as hybridization in 50% formamide/6×SSC/0.1% SDS/100 μg/ml ssDNA, in which temperatures for hybridization are above 37 degrees centigrade and temperatures for washing in 0.1×SSC/0.1% SDS are above 55 degrees C., and preferably to stringent hybridization conditions.

[0111] As used herein, the term “normalization” or “normalizer” refers to the expression of a differential value in terms of a standard value to adjust for effects which arise from technical variation due to sample handling, sample preparation, and measurement methods rather than biological variation of biomarker concentration in a sample. For example, when measuring the expression of a differentially expressed protein, the absolute value for the expression of the protein can be expressed in terms of an absolute value for the expression of a standard protein that is substantially constant in expression.

[0112] The terms “diagnosis” and “diagnostics” also encompass the terms “prognosis” and “prognostics”, respectively, as well as the applications of such procedures over two or more time points to monitor the diagnosis and/or prognosis over time, and statistical modeling based thereupon. Furthermore, the term diagnosis includes: a. prediction (determining if a patient will likely develop aggressive disease (hyperproliferative/invasive)), b. prognosis (predicting whether a patient will likely have a better or worse outcome at a pre-selected time in the future), c. therapy selection, d. therapeutic drug monitoring, and e. relapse monitoring.

[0113] “Accuracy” refers to the degree of conformity of a measured or calculated quantity (a test reported value) to its actual (or true) value. Clinical accuracy relates to the proportion of true outcomes (true positives (TP) or true negatives (TN)) versus misclassified outcomes (false positives (FP) or false negatives (FN)), and may be stated as a sensitivity, specificity, positive predictive values (PPV) or negative predictive values (NPV), or as a likelihood, odds ratio, among other measures.

[0114] The term “biological sample” as used herein refers to any sample of biological origin potentially containing one or more biomarkers. Examples of biological samples include tissue, organs, or bodily fluids such as whole blood, plasma, serum, tissue, lavage or any other specimen used for detection of disease.

[0115] The term “subject” as used herein refers to a mammal, preferably a human. In some aspects, a subject can have at least one colon cancer symptom. In some aspects, a subject can have a predisposition or familial history for developing a colon cancer. A subject can also have been previously diagnosed with a colon cancer and is tested for cancer recurrence.

[0116] “Treating” or “treatment” as used herein with regard to a condition may refer to preventing the condition, slowing the onset or rate of development of the condition, reducing the risk of developing the condition, preventing or delaying the development of symptoms associated with the condition, reducing or ending symptoms associated with the condition, generating a complete or partial regression of the condition, or some combination thereof.

[0117] Biomarker levels may change due to treatment of the disease. The changes in biomarker levels may be measured by the present disclosure. Changes in biomarker levels may be used to monitor the progression of disease or therapy.

[0118] “Altered”, “changed” or “significantly different” refer to a detectable change or difference from a reasonably comparable state, profile, measurement, or the like. Such changes may be all or none. They may be incremental and need not be linear. They may be by orders of magnitude. A change may be an increase or decrease by 5%, 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 99%, 100%, or more, or any value in between 0% and 100%. Alternatively, the change may be 1-fold, 1.5-fold, 2-fold, 3-fold, 4-fold, 5-fold or more, or any values in between 1-fold and five-fold. The change may be statistically significant with a p value of 0.1, 0.05, 0.001, or 0.0001.

[0119] The term “stable disease” refers to a diagnosis for the presence of a colon cancer, however the colon cancer has been treated and remains in a stable condition, i.e. one that that is not progressive, as determined by imaging data and/or best clinical judgment.

[0120] The term “progressive disease” refers to a diagnosis for the presence of a highly active state of a colon cancer, i.e. one has not been treated and is not stable or has been treated and has not responded to therapy, or has been treated and active disease remains, as determined by imaging data and/or best clinical judgment.

[0121] The term “neoplastic disease” refers to any abnormal growth of cells or tissues being either benign (non-cancerous) or malignant (cancerous). For example, the neoplastic disease can be a colon cancer.

[0122] The term “neoplastic tissue” refers to a mass of cells that grow abnormally.

[0123] The term “non-neoplastic tissue” refers to a mass of cells that grow normally.

[0124] The term “immunotherapy” can refer to activating immunotherapy or suppressing immunotherapy. As will be appreciated by those in the art, activating immunotherapy refers to the use of a therapeutic agent that induces, enhances, or promotes an immune response, including, e.g., a T cell response while suppressing immunotherapy refers to the use of a therapeutic agent that interferes with, suppresses, or inhibits an immune response, including, e.g., a T cell response. Activating immunotherapy may comprise the use of checkpoint inhibitors. Activating immunotherapy may comprise administering to a subject a therapeutic agent that activates a stimulatory checkpoint molecule. Stimulatory checkpoint molecules include, but are not limited to, CD27, CD28, CD40, CD122, CD137, OX40, GITR and ICOS. Therapeutic agents that activate a stimulatory checkpoint molecule include, but are not limited to, MEDI0562, TGN1412, CDX-1127, lipocalin.

[0125] The term “antibody” herein is used in the broadest sense and encompasses various antibody structures, including but not limited to monoclonal antibodies, polyclonal antibodies, multispecific antibodies (e.g., bispecific antibodies), and antibody fragments so long as they exhibit the desired antigen-binding activity. An antibody that binds to a target refers to an antibody that is capable of binding the target with sufficient affinity such that the antibody is useful as a diagnostic and/or therapeutic agent in targeting the target. In one embodiment, the extent of binding of an anti-target antibody to an unrelated, non-target protein is less than about 10% of the binding of the antibody to target as measured, e.g., by a radioimmunoassay (RIA) or biacore assay. In certain embodiments, an antibody that binds to a target has a dissociation constant (Kd) of <1 μM, <100 nM, <10 nM, <1 nM, <0.1 nM, <0.01 nM, or <0.001 nM (e.g. 108 M or less, e.g. from 108 M to 1013 M, e.g., from 109 M to 1013 M). In certain embodiments, an anti-target antibody binds to an epitope of a target that is conserved among different species.

[0126] A “blocking antibody” or an “antagonist antibody” is one that partially or fully blocks, inhibits, interferes, or neutralizes a normal biological activity of the antigen it binds. For example, an antagonist antibody may block signaling through an immune cell receptor (e.g., a T cell receptor) so as to restore a functional response by T cells (e.g., proliferation, cytokine production, target cell killing) from a dysfunctional state to antigen stimulation.

[0127] An “agonist antibody” or “activating antibody” is one that mimics, promotes, stimulates, or enhances a normal biological activity of the antigen it binds. Agonist antibodies can also enhance or initiate signaling by the antigen to which it binds. In some embodiments, agonist antibodies cause or activate signaling without the presence of the natural ligand. For example, an agonist antibody may increase memory T cell proliferation, increase cytokine production by memory T cells, inhibit regulatory T cell function, and/or inhibit regulatory T cell suppression of effector T cell function, such as effector T cell proliferation and/or cytokine production.

[0128] An “antibody fragment” refers to a molecule other than an intact antibody that comprises a portion of an intact antibody that binds the antigen to which the intact antibody binds. Examples of antibody fragments include but are not limited to Fv, Fab, Fab′, Fab′-SH, F(ab′)2; diabodies; linear antibodies; single-chain antibody molecules (e.g. scFv); and multispecific antibodies formed from antibody fragments.

[0129] Administering chemotherapy to a subject can comprise administering a therapeutically effective dose of at least one chemotherapeutic agent. Chemotherapeutic agents include, but are not limited to, 13-cis-Retinoic Acid, 2-CdA, 2-Chlorodeoxyadenosine, 5-Azacitidine, 5-Fluorouracil, 5-FU, 6-Mercaptopurine, 6-MP, 6-TG, 6-Thioguanine, Abemaciclib, Abiraterone acetate, Abraxane, Accutane, Actinomycin-D, Adcetris, Ado-Trastuzumab Emtansine, Adriamycin, Adrucil, Afatinib, Afinitor, Agrylin, Ala-Cort, Aldesleukin, Alemtuzumab, Alecensa, Alectinib, Alimta, Alitretinoin, Alkaban-AQ, Alkeran, All-transretinoic Acid, Alpha Interferon, Altretamine, Alunbrig, Amethopterin, Amifostine, Aminoglutethimide, Anagrelide, Anandron, Anastrozole, Apalutamide, Arabinosylcytosine, Ara-C, Aranesp, Aredia, Arimidex, Aromasin, Arranon, Arsenic Trioxide, Arzerra, Asparaginase, Atezolizumab, Atra, Avastin, Avelumab, Axicabtagene Ciloleucel, Axitinib, Azacitidine, Bavencio, Bcg, Beleodaq, Belinostat, Bendamustine, Bendeka, Besponsa, Bevacizumab, Bexarotene, Bexxar, Bicalutamide, Bicnu, Blenoxane, Bleomycin, Blinatumomab, Blincyto, Bortezomib, Bosulif, Bosutinib, Brentuximab Vedotin, Brigatinib, Busulfan, Busulfex, C225, Cabazitaxel, Cabozantinib, Calcium Leucovorin, Campath, Camptosar, Camptothecin-11, Capecitabine, Caprelsa, Carac, Carboplatin, Carfilzomib, Carmustine, Carmustine Wafer, Casodex, CCI-779, Ccnu, Cddp, Ceenu, Ceritinib, Cerubidine, Cetuximab, Chlorambucil, Cisplatin, Citrovorum Factor, Cladribine, Clofarabine, Clolar, Cobimetinib, Cometriq, Cortisone, Cosmegen, Cotellic, Cpt-11, Crizotinib, Cyclophosphamide, Cyramza, Cytadren, Cytarabine, Cytarabine Liposomal, Cytosar-U, Cytoxan, Dabrafenib, Dacarbazine, Dacogen, Dactinomycin, Daratumumab, Darbepoetin Alfa, Darzalex, Dasatinib, Daunomycin, Daunorubicin, Daunorubicin Cytarabine (Liposomal), daunorubicin-hydrochloride, Daunorubicin Liposomal, DaunoXome, Decadron, Decitabine, Degarelix, Delta-Cortef, Deltasone, Denileukin Diftitox, Denosumab, DepoCyt, Dexamethasone, Dexamethasone Acetate, Dexamethasone Sodium Phosphate, Dexasone, Dexrazoxane, Dhad, Dic, Diodex, Docetaxel, Doxil, Doxorubicin, Doxorubicin Liposomal, Droxia, DTIC, Dtic-Dome, Duralone, Durvalumab, Eculizumab, Efudex, Ellence, Elotuzumab, Eloxatin, Elspar, Eltrombopag, Emcyt, Empliciti, Enasidenib, Enzalutamide, Epirubicin, Epoetin Alfa, Erbitux, Eribulin, Erivedge, Erleada, Erlotinib, Erwinia L-asparaginase, Estramustine, Ethyol, Etopophos, Etoposide, Etoposide Phosphate, Eulexin, Everolimus, Evista, Exemestane, Fareston, Farydak, Faslodex, Femara, Filgrastim, Firmagon, Floxuridine, Fludara, Fludarabine, Fluoroplex, Fluorouracil, Fluorouracil (cream), Fluoxymesterone, Flutamide, Folinic Acid, Folotyn, Fudr, Fulvestrant, G-Csf, Gazyva, Gefitinib, Gemcitabine, Gemtuzumab ozogamicin, Gemzar, Gilotrif, Gleevec, Gleostine, Gliadel Wafer, Gm-Csf, Goserelin, Granix, Granulocyte—Colony Stimulating Factor, Granulocyte Macrophage Colony Stimulating Factor, Halaven, Halotestin, Herceptin, Hexadrol, Hexalen, Hexamethylmelamine, Hmm, Hycamtin, Hydrea, Hydrocort Acetate, Hydrocortisone, Hydrocortisone Sodium Phosphate, Hydrocortisone Sodium Succinate, Hydrocortone Phosphate, Hydroxyurea, Ibrance, Ibritumomab, Ibritumomab Tiuxetan, Ibrutinib, Iclusig, Idamycin, Idarubicin, Idelalisib, Idhifa, Ifex, IFN-alpha, Ifosfamide, IL-11, IL-2, Imbruvica, Imatinib Mesylate, Imfinzi, Imidazole Carboxamide, Imlygic, Inlyta, Inotuzumab Ozogamicin, Interferon-Alfa, Interferon Alfa-2b (PEG Conjugate), Interleukin-2, Interleukin-11, Intron A (interferon alfa-2b), Ipilimumab, Iressa, Irinotecan, Irinotecan (Liposomal), Isotretinoin, Istodax, Ixabepilone, Ixazomib, Ixempra, Jakafi, Jevtana, Kadcyla, Keytruda, Kidrolase, Kisqali, Kymriah, Kyprolis, Lanacort, Lanreotide, Lapatinib, Lartruvo, L-Asparaginase, Lbrance, Lcr, Lenalidomide, Lenvatinib, Lenvima, Letrozole, Leucovorin, Leukeran, Leukine, Leuprolide, Leurocristine, Leustatin, Liposomal Ara-C, Liquid Pred, Lomustine, Lonsurf, L-PAM, L-Sarcolysin, Lupron, Lupron Depot, Lynparza, Marqibo, Matulane, Maxidex, Mechlorethamine, Mechlorethamine Hydrochloride, Medralone, Medrol, Megace, Megestrol, Megestrol Acetate, Mekinist, Mercaptopurine, Mesna, Mesnex, Methotrexate, Methotrexate Sodium, Methylprednisolone, Meticorten, Midostaurin, Mitomycin, Mitomycin-C, Mitoxantrone, M-Prednisol, MTC, MTX, Mustargen, Mustine, Mutamycin, Myleran, Mylocel, Mylotarg, Navelbine, Necitumumab, Nelarabine, Neosar, Neratinib, Nerlynx, Neulasta, Neumega, Neupogen, Nexavar, Nilandron, Nilotinib, Nilutamide, Ninlaro, Nipent, Niraparib, Nitrogen Mustard, Nivolumab, Nolvadex, Novantrone, Nplate, Obinutuzumab, Octreotide, Octreotide Acetate, Odomzo, Ofatumumab, Olaparib, Olaratumab, Omacetaxine, Oncospar, Oncovin, Onivyde, Ontak, Onxal, Opdivo, Oprelvekin, Orapred, Orasone, Osimertinib, Otrexup, Oxaliplatin, Paclitaxel, Paclitaxel Protein-bound, Palbociclib, Pamidronate, Panitumumab, Panobinostat, Panretin, Paraplatin, Pazopanib, Pediapred, Peg Interferon, Pegaspargase, Pegfilgrastim, Peg-Intron, PEG-L-asparaginase, Pembrolizumab, Pemetrexed, Pentostatin, Perj eta, Pertuzumab, Phenylalanine Mustard, Platinol, Platinol-AQ, Pomalidomide, Pomalyst, Ponatinib, Portrazza, Pralatrexate, Prednisolone, Prednisone, Prelone, Procarbazine, Procrit, Proleukin, Prolia, Prolifeprospan 20 with Carmustine Implant, Promacta, Provenge, Purinethol, Radium 223 Dichloride, Raloxifene, Ramucirumab, Rasuvo, Regorafenib, Revlimid, Rheumatrex, Ribociclib, Rituxan, Rituxan Hycela, Rituximab, Rituximab Hyalurodinase, Roferon-A (Interferon Alfa-2a), Romidepsin, Romiplostim, Rubex, Rubidomycin Hydrochloride, Rubraca, Rucaparib, Ruxolitinib, Rydapt, Sandostatin, Sandostatin LAR, Sargramostim, Siltuximab, Sipuleucel-T, Soliris, Solu-Cortef, Solu-Medrol, Somatuline, Sonidegib, Sorafenib, Sprycel, Sti-571, Stivarga, Streptozocin, SU11248, Sunitinib, Sutent, Sylvant, Synribo, Tafinlar, Tagrisso, Talimogene Laherparepvec, Tamoxifen, Tarceva, Targretin, Tasigna, Taxol, Taxotere, Tecentriq, Temodar, Temozolomide, Temsirolimus, Teniposide, Tespa, Thalidomide, Thalomid, TheraCys, Thioguanine, Thioguanine Tabloid, Thiophosphoamide, Thioplex, Thiotepa, Tice, Ti sagenlecleucel, Toposar, Topotecan, Toremifene, Torisel, Tositumomab, Trabectedin, Trametinib, Trastuzumab, Treanda, Trelstar, Tretinoin, Trexall, Trifluridine/Tipiricil, Triptorelin pamoate, Trisenox, Tspa, T-VEC, Tykerb, Valrubicin, Valstar, Vandetanib, VCR, Vectibix, Velban, Velcade, Vemurafenib, Venclexta, Venetoclax, VePesid, Verzenio, Vesanoid, Viadur, Vidaza, Vinblastine, Vinblastine Sulfate, Vincasar Pfs, Vincristine, Vincristine Liposomal, Vinorelbine, Vinorelbine Tartrate, Vismodegib, Vlb, VM-26, Vorinostat, Votrient, VP-16, Vumon, Vyxeos, Xalkori Capsules, Xeloda, Xgeva, Xofigo, Xtandi, Yervoy, Yescarta, Yondelis, Zaltrap, Zanosar, Zarxio, Zejula, Zelboraf, Zevalin, Zinecard, Ziv-aflibercept, Zoladex, Zoledronic Acid, Zolinza, Zometa, Zydelig, Zykadia, Zytiga, or any combination thereof.

[0130] The terms “effective amount” and “therapeutically effective amount” of an agent or compound are used in the broadest sense to refer to a nontoxic but sufficient amount of an active agent or compound to provide the desired effect or benefit.

[0131] The term “benefit” is used in the broadest sense and refers to any desirable effect and specifically includes clinical benefit as defined herein. Clinical benefit can be measured by assessing various endpoints, e.g., inhibition, to some extent, of disease progression, including slowing down and complete arrest; reduction in the number of disease episodes and/or symptoms; reduction in lesion size; inhibition (i.e., reduction, slowing down or complete stopping) of disease cell infiltration into adjacent peripheral organs and/or tissues; inhibition (i.e. reduction, slowing down or complete stopping) of disease spread; decrease of auto-immune response, which may, but does not have to, result in the regression or ablation of the disease lesion; relief, to some extent, of one or more symptoms associated with the disorder; increase in the length of disease-free presentation following treatment, e.g., progression-free survival; increased overall survival; higher response rate; and/or decreased mortality at a given point of time following treatment.

[0132] The terms “cancer” and “cancerous” refer to or describe the physiological condition in mammals that is typically characterized by unregulated cell growth. Included in this definition are benign and malignant cancers. Examples of cancer include but are not limited to, carcinoma, lymphoma, blastoma, sarcoma, and leukemia. More particular examples of such cancers include adrenocortical carcinoma, bladder urothelial carcinoma, breast invasive carcinoma, cervical squamous cell carcinoma, endocervical adenocarcinoma, cholangiocarcinoma, colon adenocarcinoma, lymphoid neoplasm diffuse large B-cell lymphoma, esophageal carcinoma, glioblastoma multiforme, head and neck squamous cell carcinoma, kidney chromophobe, kidney renal clear cell carcinoma, kidney renal papillary cell carcinoma, acute myeloid leukemia, brain lower grade glioma, liver hepatocellular carcinoma, lung adenocarcinoma, lung squamous cell carcinoma, mesothelioma, ovarian serous cystadenocarcinoma, pancreatic adenocarcinoma, pheochromocytoma, paraganglioma, prostate adenocarcinoma, rectum adenocarcinoma, sarcoma, skin cutaneous melanoma, stomach adenocarcinoma, testicular germ cell tumors, thyroid carcinoma, thymoma, uterine carcinosarcoma, uveal melanoma. Other examples include breast cancer, lung cancer, lymphoma, melanoma, liver cancer, colorectal cancer, ovarian cancer, bladder cancer, renal cancer or gastric cancer. Further examples of cancer include neuroendocrine cancer, non-small cell lung cancer (NSCLC), small cell lung cancer, thyroid cancer, endometrial cancer, biliary cancer, esophageal cancer, anal cancer, salivary, cancer, vulvar cancer or cervical cancer.

[0133] The term “tumor” refers to all neoplastic cell growth and proliferation, whether malignant or benign, and all pre-cancerous and cancerous cells and tissues. The terms “cancer,” “cancerous,” “cell proliferative disorder,” “proliferative disorder” and “tumor” are not mutually exclusive as referred to herein.

EXAMPLES

[0134] The disclosure is further illustrated by the following examples, which are not to be construed as limiting this disclosure in scope or spirit to the specific procedures herein described. It is to be understood that the examples are provided to illustrate certain aspects and that no limitation to the scope of the disclosure is intended thereby. It is to be further understood that resort may be had to various other aspects, embodiments, modifications, and equivalents thereof which may suggest themselves to those skilled in the art without departing from the spirit of the present disclosure and/or scope of the appended claims.

Example 1. Derivation of a 13-Marker Gene Panel

[0135] Raw probe intensities from n=24 colon cancer tumor tissue samples were compared to n=22 control colon mucosa to identify genes that best discriminated between disease using the transcriptional profile of E-MTAB-57. Gene co-expression networks were generated to identify temporal patterns of gene regulation associated with colon cancer. A total of 513 nodes with 53,786 links were identified. Differential expression analysis identified 103 genes were upregulated in tumor tissue compared to blood. To identify blood-specific colon cancer gene biomarkers, we evaluated expression of the 103 genes in peripheral blood transcriptomes (n=7). Thirty-three (32%) of the 103 genes were below the level of detection in blood identifying these as candidate genes. Evaluation of transcripts in a preliminary dataset of blood samples from colon cancer (n=20) and matched normal blood (n=20) identified thirteen genes and one house-keeping gene as markers of colon cancer (Table 2). These genes were demonstrated to be highly expressed in colon cancer tumor tissue compared to normal mucosa and in three different colon cancer cell lines, LOVO (metastatic, hyperdiploid, MSI unstable cell line), LS-180 (derived from a Duke's B, colorectal adenocarcinoma) and Colo 320DM (derived from a Duke's C, colorectal adenocarcinoma). These data demonstrate target transcripts are produced by neoplastically transformed colon mucosal cells (FIGS. 1A-1B).

[0136] An artificial intelligence model of colon cancer disease was built using normalized gene expression of these 13 markers in whole blood from Controls (n=120) and Colon Cancers (n=272) samples. The dataset was randomly split into training and testing partitions for model creation and validation respectively. Twelve algorithms were evaluated (XGB, RF, glmnet, cforest, CART, treebag, knn, nnet, SVM-radial, SVM-linear, NB and mlp). The top performing algorithm (XGB—“gradient boosting”) best predicted the training data. In the test set, XGB produced probability scores that predicted the sample. Each probability score reflects the “certainty” of an algorithm that an unknown sample belongs to either “Control” or “Colon Cancer” class. For example, an unknown sample Si can have the following probability vector [Control=20%, Colon Cancer=80%]. This sample would be considered a colon cancer sample.

Example 2. Clinical Utility

[0137] The data (receiver operator cuver analysis and metrics) for the utility of the test to differentiate patients with colon cancer (n=136) from controls (n=60) in the training and test sets are included in FIGS. 2A-2B. The score exhibited an area under the curve (AUC) of 0.90 (training) and 0.86 (test set). The metrics are: sensitivity: 85.3-87.5% and specificity: 75-83.3%.

[0138] Overall, ColoTest scores were significantly elevated in cancers (63±1%) and controls (34±2%) (FIGS. 3A-3B). The overall accuracy (training and test cohort) is 84%, with an AUC: 0.88. The z-statistic for differentiating controls was 18.5.

[0139] A decision curve analysis was used to quantify the clinical benefit of the diagnostic test (FIGS. 4A-4B). The ColoTest exhibited >50% standardized predictive benefit up to a risk threshold of 80%. The probit risk assessment plot identified a ColoTest score >50% was 75% accurate for predicting colon cancer in a blood sample. This was increased to >80% at a ColoTest score ≥60%. The tool can therefore accurately differentiate between controls and colon cancer disease.

[0140] Specific evaluation of a colon cancer cohort before and after surgery identified that complete removal of a tumor and no evidence of disease was associated with a significant decrease (p<0.0001) in the ColoTest (FIG. 5). Levels were not significantly different in those with evidence of residual disease.

[0141] Examination of a separate colon cancer cohort by disease status (clinical evaluation at time of blood-draw) identified that the ColoTest was not significantly different between stable (n=17: 56±7%) and progressive disease (n=32: 68±4%) (FIGS. 6A-6C). However, 12 of the 17 patients progressed with 3 months of blood collection. Those that did progress exhibited elevated ColoTest scores at time of blood draw (n=12: 73±4%) that were not different to those with progressive disease at time of blood draw (n=32: 68±4%) (FIGS. 6A-6C). Levels in patients with stable disease were significantly lower (n=5: 16±4%, p<0.0001). A direct comparison between the ColoTest and CEA in these samples identified that the gene expression assay was significantly more sensitive (p<0.05) than CEA for predicting disease progression (FIG. 7). The ColoTest tool can therefore accurately predict progressive colon cancer disease.

[0142] ROC analysis identified the ColoTest had an AUC: 0.97 for differentiating stable from progressive disease. The z-statistic for differentiating controls was 20.6. Further evaluation of this cohort identified that patients who exhibited disease progression despite therapy exhibited higher scores than those responding to therapy (FIG. 8). Therapies included bevacizumab, chemotherapy and EGFR TKI inhibitors. The tool can therefore accurately identify treatment failure in colon cancer disease.

TABLE-US-00002 TABLE 2 Colon Cancer Biomarker or Housekeeping Genes NCBI Chromosome Amplicon Exon Assay Symbol Name location UniGene ID RefSeq length Boundary Location ADRM1 adhesion regulating Chr.20: 62302056- Hs.90107 NM_007002.3  60 3-4  486 molecule 1 62308862 CDK4 cyclin dependent Chr.12: 57747727- Hs.95577 NM_000075.3  65 5-6  928 kinase 4 57752447 COMT catechol-O- Chr.22: 19941740- Hs.370408 NM_000754.3 118 5-6  864 methyltransferase 19969975 DHCR7 7-dehydrocholesterol Chr.11: 71434411- Hs.503134 NM_001163817.1  74 3-4  351 reductase 71448431 HMOX2 heme oxygenase 2 Chr.16: 4474697- Hs.284279 NM_001127204.1  81 5-6 1002 4510347 MCM2 minichromosome Chr.3: 127598357- Hs.477481 NM_004526.3  67 13-14 2374 maintenance complex 127622436 component 2 MORF4L1 mortality factor 4 Chr.15: 78872781- Hs.374503 NM_001265603.1  62 1  116 (housekeeping like 1 78897739 gene) PDXK pyridoxal (pyridoxine, Chr.21: 43719097- Hs.284491 NM_003681.4 103  9-10  959 vitamin B6) kinase 43762307 POP7 POP7 homolog, Chr.7: 100706053- Hs.416994 NM_005837.2 136 2  828 ribonuclease P/MRP 100707500 subunit S100P S100 calcium binding Chr.4: 6693839- Hs.2962 NM_005980.2  73 1-2  234 protein P 6697170 SNRPA small nuclear Chr.19: 40750854- Hs.466775 NM_004596.4 123 3-4  986 ribonucleoprotein 40765392 polypeptide A SORD sorbitol Chr.15: 45023104- Hs.878 NM_003104.5  72 4-5  601 dehydrogenase 45075089 STOML2 stomatin like 2 Chr.9: 35099776- Hs.3439 NM_001287031.1  68 2-3  290 35103195 UMPS uridine Chr.3: 124730366- Hs.2057 NM_000373.3  85 3-4 1082 monophosphate 124749273 synthetase

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EQUIVALENTS

[0158] While the present invention has been described in conjunction with the specific aspects set forth above, many alternatives, modifications and other variations thereof will be apparent to those of ordinary skill in the art. All such alternatives, modifications and variations are intended to fall within the spirit and scope of the present invention.