THERAPEUTIC AGENTS
20240076348 ยท 2024-03-07
Inventors
- John Maher (London, GB)
- Daniela Yordanova Achkova (London, GB)
- Lynsey May Whilding (London, GB)
- Benjamin Owen Draper (London, GB)
Cpc classification
A61K39/464406
HUMAN NECESSITIES
A61K39/464418
HUMAN NECESSITIES
A61K39/4611
HUMAN NECESSITIES
C07K14/705
CHEMISTRY; METALLURGY
C07K2319/33
CHEMISTRY; METALLURGY
A61K39/464417
HUMAN NECESSITIES
C07K14/70578
CHEMISTRY; METALLURGY
A61K2239/38
HUMAN NECESSITIES
A61K39/464402
HUMAN NECESSITIES
International classification
C07K14/705
CHEMISTRY; METALLURGY
Abstract
An immunoresponsive cell, such as a T-cell expressing (i) a second generation chimeric antigen receptor comprising: (a) a signalling region; (b) a co-stimulatory signalling region; (c) a transmembrane domain; and (d) a binding element that specifically interacts with a first epitope on a target antigen; and (ii) a chimeric costimulatory receptor comprising (e) a co-stimulatory signalling region which is different to that of (b); (f) a transmembrane domain; and g) a binding element that specifically interacts with a second epitope on a target antigen.
This arrangement is referred to as parallel chimeric activating receptors (pCAR). Cells of this type are useful in therapy, and kits and methods for using them as well as methods for preparing them are described and claimed.
Claims
1. An immuno-responsive cell, expressing: (i) a first single-pass transmembrane fusion protein comprising means for delivering an activation signal and means for delivering a first co-stimulatory signal upon a first antigen-specific engagement; and (ii) a second single-pass transmembrane fusion protein comprising means for delivering a second co-stimulatory signal upon a second antigen-specific engagement, wherein the first co-stimulatory signal is different from the second co-stimulatory signal.
2. The immuno-responsive cell of claim 1, wherein the means for delivering the first co-stimulatory signal and the means for delivering the second co-stimulatory signal are costimulatory regions separately selected from B7-1, B7-2, B7-H1, B7-H2, B7-H3, B7-H4, B7-H6, B7-H7, BTLA, CD28, CTLA-4, Gi24, ICOS, PD-1, PD-L2, PDCD6, LILRA3, LILRA4, LILRB1, LILRB2, LILRB3, LILRB4, 4-1BB, BAFF, BAFF R, CD27, CD30, CD40, DR3, GITR, HVEM, LIGHT, Lymphotoxin-alpha, OX40, RELT, TACI, TL1A, TNF-alpha, TNF RII, 2B4, BLAME, CD2, CD2F-10, CD48, CD58, CD84, CD229, CRACC, NTB-A, SLAM, TIM-1, TIM-3, TIM-4, CD7, CD96, CD160, CD200, CD300a, CRTAM, DAP12, Dectin-1, DPPIV, EphB6, Integrin alpha 4 beta 1, Integrin alpha 4 beta 7/LPAM-1, LAG-3, and TSLP R.
3. The immuno-responsive cell of claim 1, wherein the means for delivering the activation signal is selected from human CD3? or a variant thereof.
4. The immune-responsive cell of claim 1, wherein the immune-responsive cell is a T-cell or a Natural Killer (NK) cell.
5. An isolated immuno-responsive cell expressing: (i) a second generation chimeric antigen receptor (CAR); and (ii) a modified second generation CAR that lacks a signal activation region (a chimeric costimulatory receptor, CCR), wherein the co-stimulatory signaling region of the CAR is different from the co-stimulatory signaling region of the CCR.
6. The isolated immuno-responsive cell of claim 5, wherein the CAR comprises a signal activation region selected from human CD3? or a variant thereof.
7. The isolated immuno-responsive cell of claim 5, wherein the CAR and CCR each has a co-stimulatory signaling region separately selected from B7-1, B7-2, B7-H1, B7-H2, B7-H3, B7-H4, B7-H6, B7-H7, BTLA, CD28, CTLA-4, Gi24, ICOS, PD-1, PD-L2, PDCD6, LILRA3, LILRA4, LILRB1, LILRB2, LILRB3, LILRB4, 4-1BB, BAFF, BAFF R, CD27, CD30, CD40, DR3, GITR, HVEM, LIGHT, Lymphotoxin-alpha, OX40, RELT, TACI, TL1A, TNF-alpha, TNF RII, 2B4, BLAME, CD2, CD2F-10, CD48, CD58, CD84, CD229, CRACC, NTB-A, SLAM, TIM-1, TIM-3, TIM-4, CD7, CD96, CD160, CD200, CD300a, CRTAM, DAP12, Dectin-1, DPPIV, EphB6, Integrin alpha 4 beta 1, Integrin alpha 4 beta 7/LPAM-1, LAG-3, and TSLP R.
8. The isolated immuno-responsive cell of claim 7, wherein the CAR has a co-stimulatory signaling region selected from CD28, CD27, ICOS, 4-1 BB, OX40, CD30, GITR, HVEM, DR3, and CD40.
9. The isolated immuno-responsive cell of claim 5, wherein the CAR has a transmembrane domain selected from CD8?, CD28, CD4, or CD3? transmembrane domains or a variant thereof; and the CCR has a transmembrane domain selected from CD8?, CD28, CD4, or CD3? transmembrane domains or a variant thereof.
10. The isolated immuno-responsive cell of claim 9, wherein the CAR transmembrane domain and the CCR transmembrane domain are the same.
11. The isolated immuno-responsive cell of claim 9, wherein the CAR transmembrane domain and the CCR transmembrane domain are different.
12. The isolated immuno-responsive cell of claim 5, wherein the immuno-responsive cell is a T-cell or a Natural Killer (NK) cell.
13. In an immuno-responsive cell expressing a second generation chimeric antigen receptor (CAR), the improvement comprising: expressing a modified second generation CAR that lacks a signal activation region (chimeric costimulatory receptor, CCR), wherein the CCR comprises a co-stimulatory signaling region that is different from the co-stimulatory signaling region of the CAR.
14. An immuno-responsive cell comprising one or more vectors collectively encoding: (i) a second generation chimeric antigen receptor (CAR); and (ii) a modified second generation CAR that lacks a signal activation region (chimeric costimulatory receptor, CCR), wherein each of the CAR and CCR comprise a co-stimulatory signaling region and the co-stimulatory signaling region of the CAR is different from the co-stimulatory signaling region of the CCR.
15. A method of making a construct capable of expressing a parallel chimeric antigen receptor (pCAR), the method comprising: cloning into an expression vector polynucleotides encoding (i) a second generation chimeric antigen receptor (CAR); and (ii) a modified second generation CAR that lacks a signal activation region (chimeric costimulatory receptor, CCR), wherein each of the CAR and CCR comprise a co-stimulatory signaling region and the co-stimulatory signaling region of the CAR is different from the co-stimulatory signaling region of the CCR.
16. A method of enhancing cytotoxic activity of second generation CAR-T cells, comprising: expressing a chimeric costimulatory receptor (CCR) in the second generation CAR-T cells, wherein the CCR comprises a co-stimulatory signaling region that is different from the co-stimulatory region of the CAR.
17. A viral vector, comprising: (i) a coding sequence of a signaling region; (ii) a coding sequence of a co-stimulatory signaling region, and (iii) a coding sequence of a transmembrane domain; (iv) a coding region of an extracellular domain; (v) a first ribosomal skip peptide; (vi) a coding sequence of a co-stimulatory signaling region which is different from that of (ii); (vi) a coding sequence of a transmembrane domain; and (vii) a coding region of an extracellular domain.
18. The viral vector of claim 17, further comprising: a second ribosomal skip peptide and a coding sequence of an IL-4 responsive 4?? receptor.
19. The viral vector of claim 17 or 18, wherein the viral vector is a retroviral vector.
Description
DETAILED DESCRIPTION OF THE INVENTION
[0069] The invention will now be particularly described by way of example and with reference to the following Figures in which:
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Example 1
[0086] A panel of CARs targeted against the CSF-1 receptor (encoded by c-FMS), which is over-expressed in Hodgkin's lymphoma, anaplastic large cell lymphoma and some solid tumours such as triple negative breast cancer were prepared and are illustrated schematically in
[0087] The constructs SFG C28? and SFG CTr were cloned in the SFG retroviral vector as Ncol/Xhol fragments, ensuring that their start codons are at the site of the naturally occurring Ncol site, previously occupied by the deleted env gene. Gene expression is achieved from the Moloney murine leukaemia virus (MoMLV) long terminal repeat (LTR), which has promoter activity and virus packaging of the RNA is ensured by the MoMLV ? packaging signal, which is flanked by splice donor and acceptor sites.
[0088] All other constructs were designed and cloned using the Polymerase Incomplete Primer Extension (PIPE) cloning method. PIPE cloning method is a PCR-based alternative to conventional restriction enzyme- and ligation-dependent cloning methods. It eliminates the need to incorporate restriction sites, which could encode additional unwanted residues into expressed proteins. The PIPE method relies on the inefficiency of the amplification process in the final cycles of a PCR reaction, possibly due to the decreasing availability of dNTPs, which results in the generation of partially single-stranded (PIPE) PCR products with overhanging 5 ends. A set of vector-specific primers was used for PCR vector linearization and another set of primers with 5-vector-end overlapping sequences then used for insert amplification, generating incomplete extension products by PIPE. In a following step, the PIPE products were mixed and the single-stranded overlapping sequences annealed and assembled as a complete SFG CAR construct. Successful cloning was confirmed by diagnostic restriction digestion. DNA sequencing was performed on all constructs to confirm that the predicted coding sequence was present, without any PCR-induced mutations (Source Bioscience, UK).
[0089] The panel included two dual targeted Chimeric Activating Receptors (pCARS) in which CSF-1 or IL-34 are coupled to 28z and 4-1 BB, or vice versa. The dual targeted pCAR combinations were then stoichiometrically co-expressed in the same T-cell population using a Thosea Asigna (T)2A-containing retroviral vector. One of these CARs was designated C34B (CSF1-28z plus IL34-41 BB) and the other was named 34CB (IL34-28z plus CSF1-41 BB).
[0090] In these dual targeted CAR T-cells, both co-stimulatory motifs (CD28/4-1 BB) are placed in their natural location, close to the membrane, physically separated from each other and co-expressed in the same T-cell.
[0091] All CARs were co-expressed with an IL-4 responsive 4?? receptor using an additional T2A element in the vector. This enables enrichment/expansion of T-cells using IL-4, making it easier to compare the function of these diverse cell populations after selection.
[0092] The main focus of the experiments was to test the behaviour of the T-cells on repeated re-stimulation with tumour target cells that either express or lack the FMS/CSF-1 receptor target. In each cycle, 1 million of the indicated IL-4 expanded CAR T-cells were suspended in RPMI+human AB serum and cultured with a confluent monolayer (24 well dish) of the antigen-expressing target (T47D FMS) or antigen null target (T47D).
[0093] Thereafter, if the CAR T-cells had persisted and destroyed the monolayer, 1 million T-cells were removed and re-stimulated in an identical manner each week. Total cell number was extrapolated at each time-point depending on the expansion of T-cells that occurred in each weekly cycle.
[0094] Throughout all of these experiments, T-cells were cultured in the absence of any exogenous cytokine such as IL-2 or IL-4so they had to make their own cytokines in order to persist and expand. Cytokine (IFN-? and IL-2) production was measured by ELISA in supernatants harvested from T-cell/tumour cell co-cultures, providing a second marker of effective co-stimulation.
[0095] It was found (
[0096] A representative re-stimulation experiment is shown in
[0097] In the later cycles however, the C34B dual pCAR combination (a CSF-1 targeted 28z second generation CAR co-expressed with an IL-34 targeted 4-1 BB co-stimulatory motif) consistently emerged as clearly superior.
[0098] In the experiment shown in
[0099] Number of viable T-cells post monolayer destruction on consecutive cycles of Ag-stimulation was also monitored and the results are shown in
[0100] Also, so-called exhaustion markers on these T-cells (PD1, TIM3, 2B4 and LAG3) were also measured by flow cytometry. The results are shown in
[0101] In summary, the pCAR approach of the invention seems to maintain the cells in a state whereby they retain responsiveness to antigen through more cycles of re-stimulation. There are indications that it may retard differentiation beyond controlled memory state and it appears to delay the onset of anergy while retaining the ability of the cells to make IL-2 upon activation.
Example 2
[0102] Analysis of Effects In Vivo
[0103] A panel of CARs used in Example 1 above were tested for anti-tumour activity using a highly aggressive in vivo xenograft model in which the CSF-1 receptor target is expressed at low levels and in which disease is disseminated throughout lymph nodes (
[0104] SCID/Beige mice were randomised into 6 groups (9 animals per group combined over two independent experiments) and were inoculated intravenously (IV) with 2?10.sup.6 K299 tumour cells, re-suspended in 200 ?L PBS. On day 5, the groups were treated with one of the therapeutic regimens indicated below: [0105] C4B group: 20?10.sup.6 C4B T-cells IV [0106] C34B group: 20?10.sup.6 C34B T-cells IV [0107] 43428Bz: 20?10.sup.6 43428Bz T-cells IV [0108] 34CB group: 20?10.sup.6 34CB T-cells IV [0109] UT (Untransduced) group: 20?10.sup.6 untransduced T-cells IV [0110] NT (Non-treated) group: 200 ?L PBS IV
[0111] Tumour growth was monitored using bioluminescence imaging (BLI) at appropriate time-points for the duration of the study.
[0112] The results are shown in
[0113] Animals were weighed throughout the experiment and no significant toxicity was noted (
Example 3
[0114] Selection of Targeting Moieties to Engineer pCARs that Elicit T-Cell Activation in an ?v?6-Dependent Manner.
[0115] A panel of CARs that target ?v?6 integrin alone or together with the extended ErbB family were prepared and are shown schematically in
[0116] To create the pCAR of the invention (named TIE-41 BB/A20-28z), A20-28z was co-expressed with a chimeric co-stimulatory receptor comprising a pan-ErbB targeted peptide (T1E) fused to a CD8a transmembrane and a 41 BB endodomain.
[0117] Where indicated, CARs were co-expressed with the 4?? chimeric cytokine receptor to allow for IL-4-mediated enrichment in vitro. Equimolar co-expression of the IL-4-responsive 4?? chimeric cytokine receptor, in which the IL-4 receptor ? ectodomain is fused to the transmembrane and endodomain of the shared IL-2/15 receptor ?, was achieved using a Thosea Asigna (T)2A ribosomal skip peptide. These chimeric molecules were expressed in human T-cells by retroviral gene transfer.
[0118] The integrin expression pattern of cancer cell lines A375 was assessed using flow cytometry (
[0119] These data show that A20-28z CAR T-cells kill all target cells that express ?v?6 integrin (Bxpc3 and A375 ?6 puro), but spare targets that lack this integrin (Panc1 and A375 puro). Secondly, the control CARs C20-28z and A20-Tr are inactive in these assays. Thirdly, T-cells that express the T1E-41 BB/A20-28z pCAR cause efficient killing of target cells that express ?v?6 integrin (Bxpc3 and A375 ?6 puro). All of these results are as expected. Notably however, T-cells that express the T1E-41 BB/A20-28z pCAR also cause the killing of target cells that lack ?v?6 (Panc1 and A375 puro). This indicates that, within a pCAR configuration, the ability of the A20 peptide to bind non-?v?6 integrins with low affinity is sufficient to trigger the activation of these engineered T-cells.
[0120] Production of IFN-? by the pCAR and control engineered T-cells was then assessed. Tumour cells that lacked ?v?6 (Panc1 and A375 puro) or expressed ?v?6 (Bxpc3 and A375 puro ?6) were co-cultured with genetically engineered T-cells at an effector:target ratio of 1:1 and supernatant was collected after 24, 48 or 72 hours. Levels of IFN-? were quantified by ELISA (eBioscience). The results are shown in
[0121] Next, the CAR T-cell populations were re-stimulated bi-weekly in the absence of IL-2 support on Panc1 (?v?6 negative) or Bxpc3 tumour cells (?v?6 positive). Tumour cells were co-cultured with CAR T-cells derived from a patient with pancreatic ductal adenocarcinoma (PDAC) at an effector:target ratio of 1:1 (
[0122] Results are shown in
[0123] Overall, the results clearly showed that the pCAR comprising A20-28z/T1E-41 BB exhibits enhanced in vitro functionality compared to a 2.sup.nd generation CAR targeted against ?v?6. Furthermore, the A20-28z/T1E-41 BB.sup.+ T-cells also undergo activation by Panc1 or A375 puro cells, which express minimal to undetectable levels of this integrin. Taken with the findings obtained using the C34B pCAR (examples 1 and 2), this indicates that the pCAR configuration allows T-cell activation to occur upon serial re-stimulation when a high affinity binding interaction occurs with the 41 BB CCR while a lower affinity interaction occurs with the 28z 2.sup.nd generation CAR.
Example 4
[0124] Use of an Alternative TNF Receptor Family Member, CD27 to Engineer a Functional pCAR.
[0125] Using the A20-28z/T1E-41 BB pCAR as starting material, additional pCARs were engineered in which the 41 BB module was replaced by alternative members of the TNF receptor family, namely CD27 or CD40. Control pCARs were engineered in which endodomains were truncated (tr). Target cells that express (Bxpc3) or lack (Panc1) ?v?6 were plated at a density of 5?10.sup.4 cells per well of a 24 well plate. After 24 hours, 5?10.sup.4 pCAR T-cells were added to target cells or empty wells (unstimulated), without exogenous cytokine support. After a further 72 hours, T-cells were harvested from the wells and were counted (
[0126] These data once again confirm the superior functionality of the A20-28z/T1E-41 BB pCAR when T-cells are stimulated on Panc1 target cells, indicated by sustained T-cell proliferation and tumour cell killing. This provides further confirmation that low affinity binding of the A20 peptide to non-?v?6 integrins is sufficient to trigger the activation of these engineered T-cells. Notably however, the A20-28z/T1E-CD27 pCAR achieved the greatest level of proliferation (