ONCOLYTIC VIROTHERAPY AND IMMUNOTHERAPY
20190374589 ยท 2019-12-12
Assignee
Inventors
- Masataka Suzuki (Houston, TX, US)
- Amanda Rosewell Shaw (Pearland, TX, US)
- Caroline Elaine Porter (Houston, TX, US)
- Norihiro Watanabe (Houston, TX, US)
- Malcolm K. Brenner (Bellaire, TX)
Cpc classification
A61K35/17
HUMAN NECESSITIES
C07K2319/33
CHEMISTRY; METALLURGY
C07K2317/73
CHEMISTRY; METALLURGY
A61K39/3955
HUMAN NECESSITIES
C12N15/86
CHEMISTRY; METALLURGY
A61P35/00
HUMAN NECESSITIES
A61K39/464406
HUMAN NECESSITIES
A61K39/4611
HUMAN NECESSITIES
C12N2710/10332
CHEMISTRY; METALLURGY
A61K38/1774
HUMAN NECESSITIES
C07K2317/24
CHEMISTRY; METALLURGY
International classification
A61K35/17
HUMAN NECESSITIES
A61P35/00
HUMAN NECESSITIES
Abstract
The present disclosure concerns combination therapy for cancer that utilizes (i) an oncolytic virus; (ii) a virus comprising nucleic acid encoding an immunomodulatory factor, and (iii) at least one cell comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen. In particular embodiments, the virus comprises nucleic acid encoding an immunomodulatory factor comprises nucleic acid encoding IL-12 and/or antagonist anti-PD-L1 antibody.
Claims
1-46. (canceled)
47. A method of treating a cancer, comprising administering to a subject: (i) an oncolytic virus; (ii) a virus comprising nucleic acid encoding IL-12 and an antagonist anti-PD-L1 antibody; and (iii) at least one cell comprising a chimeric antigen receptor (CAR), wherein the CAR comprises an antigen binding domain capable of specific binding to HER2.
48. The method according to claim 47, wherein the oncolytic virus is an oncolytic adenovirus (OncAd).
49. The method according to claim 47, wherein the oncolytic virus is derived from adenovirus 5 (Ad5).
50. The method according to claim 47, wherein the oncolytic virus encodes an E1A protein which displays reduced binding to Rb protein as compared to E1A protein encoded by Ad5.
51. The method according to claim 47, wherein the oncolytic virus encodes an E1A protein lacking the amino acid sequence LTCHEACF (SEQ ID NO:52).
52. The method according to claim 47, wherein the oncolytic virus encodes an E1A protein comprising, or consisting of, the amino acid sequence SEQ ID NO:34.
53. The method according to claim 47, wherein the at least one cell comprising a CAR specific for a cancer cell antigen is a T cell.
54. The method according to claim 47, wherein the CAR comprises an antigen-binding domain comprising: a VL domain comprising: LC-CRD1: SEQ ID NO:10; LC-CRD2: SEQ ID NO: 11; LC-CRD3: SEQ ID NO:12; and a VH domain comprising: HC-CRD1: SEQ ID NO:13; HC-CRD2: SEQ ID NO:14; HC-CRD3: SEQ ID NO:15; or a VL domain comprising: LC-CRD1: SEQ ID NO:18; LC-CRD2: SEQ ID NO:19; LC-CRD3: SEQ ID NO:20; and a VH domain comprising: HC-CRD1: SEQ ID NO:21; HC-CRD2: SEQ ID NO:22; HC-CRD3: SEQ ID NO:23; or a VL domain comprising: LC-CRD1: SEQ ID NO:26; LC-CRD2: SEQ ID NO:27; LC-CRD3: SEQ ID NO:28; and a VH domain comprising: HC-CRD1: SEQ ID NO:29; HC-CRD2: SEQ ID NO:30; HC-CRD3: SEQ ID NO:31; or a VL domain comprising: LC-CRD1: SEQ ID NO:57; LC-CRD2: SEQ ID NO:58; LC-CRD3: SEQ ID NO:59; and a VH domain comprising: HC-CRD1: SEQ ID NO:60; HC-CRD2: SEQ ID NO:61; HC-CRD3: SEQ ID NO:62.
55. The method according to claim 47, wherein the CAR comprises an antigen binding domain comprising: a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO: 16 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:17; or a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:24 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:25; or a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:32 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:33; or a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:63 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:64.
56. The method according to claim 47, wherein the virus comprising nucleic acid encoding IL-12 and an antagonist anti-PD-L1 antibody is a helper-dependent adenovirus (HDAd).
57. The method according to claim 47, wherein the virus comprising nucleic acid encoding IL-12 and an antagonist anti-PD-L1 antibody further comprises nucleic acid encoding an enzyme capable of catalysing conversion of a non-toxic factor to a cytotoxic form.
58. The method according to claim 57, wherein the enzyme is selected from: thymidine kinase, cytosine deaminase, nitroreductase, cytochrome P450, carboxypeptidase G2, purine nucleoside phosphorylase, horseradish peroxidase and carboxylesterase.
59. The method according to claim 57, wherein the enzyme is HSV-1 thymidine kinase.
60. The method according to claim 47, wherein the method of treating a cancer comprises: (a) isolating at least one cell from a subject; (b) modifying the at least one cell to express or comprise a CAR specific for a cancer cell antigen, or a nucleic acid encoding a CAR specific for a cancer cell antigen, (c) optionally expanding the modified at least one cell, and; (d) administering the modified at least one cell to a subject.
61. The method according to claim 47, wherein the cancer is selected from head and neck cancer, nasopharyngeal carcinoma (NPC), cervical carcinoma (CC), oropharyngeal carcinoma (OPC), gastric carcinoma (GC), hepatocellular carcinoma (HCC) and lung cancer.
62. A composition comprising an oncolytic virus and a virus comprising nucleic acid encoding IL-12 and an antagonist anti-PD-L1 antibody.
63. The composition according to claim 62, wherein the oncolytic virus encodes an E1A protein which displays reduced binding to Rb protein as compared to E1A protein encoded by Ad5.
64. The composition according to claim 62, wherein the oncolytic virus encodes an E1A protein comprising, or consisting of, the amino acid sequence SEQ ID NO:34.
65. The composition according to claim 62, wherein the virus comprising nucleic acid encoding IL-12 and an antagonist anti-PD-L1 antibody further comprises nucleic acid encoding a thymidine kinase.
66. The composition according to claim 62, wherein the virus comprising nucleic acid encoding IL-12 and an antagonist anti-PD-L1 antibody is a helper-dependent adenovirus (HDAd).
Description
BRIEF DESCRIPTION OF THE FIGURES
[0402] Embodiments and studies illustrating the principles of the disclosure will now be discussed with reference to the accompanying figures.
[0403]
[0404]
[0405]
[0406]
[0407]
[0408]
[0409]
[0410]
[0411]
[0412]
[0413]
[0414]
[0415]
[0416]
[0417]
[0418]
[0419]
[0420]
[0421]
[0422]
[0423]
[0424]
[0425]
[0426]
NUMBERED STATEMENTS OF DISCLOSURE
[0427] Following numbered paragraphs (paras) describe particular aspects and embodiments of the present disclosure:
1. A method of treating a cancer, comprising administering to a subject: [0428] (i) an oncolytic virus; [0429] (ii) a virus comprising nucleic acid encoding an immunomodulatory factor: and [0430] (iii) at least one cell comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen.
2. The method of para 1, wherein the oncolytic virus is an oncolytic adenovirus (OncAd).
3. The method of para 1 or para 2, wherein the oncolytic virus is derived from adenovirus 5 (Ad5).
4. The method of any one of paras 1 to 3, wherein the oncolytic virus encodes an E1A protein which displays reduced binding to Rb protein as compared to E1A protein encoded by Ad5.
5. The method of any one of paras 1 to 4, wherein the oncolytic virus encodes an E1A protein lacking the amino acid sequence LTCHEACF (SEQ ID NO:52).
6. The method of any one of paras 1 to 5, wherein the oncolytic virus encodes an E1A protein comprising, or consisting of, the amino acid sequence SEQ ID NO:34.
7. The method of any one of paras 1 to 6, wherein the oncolytic virus comprises nucleic acid having one or more binding sites for one or more transcription factors.
8. The method of any one of paras 1 to 7, wherein the oncolytic virus comprises nucleic acid having one or more binding sites for STAT1.
9. The method of any one of paras 1 to 8, wherein the virus comprising nucleic acid encoding an immunomodulatory factor is a helper-dependent adenovirus (HDAd).
10. The method of any one of paras 1 to 9, wherein the immunomodulatory factor is selected from: an agonist of an effector immune response or antagonist of an immunoregulatory response.
11. The method of any one of paras 1 to 10, wherein the virus comprising nucleic acid encoding an immunomodulatory factor comprises nucleic acid encoding IL-12 and/or antagonist anti-PD-L1 antibody.
12. The method of any one of paras 1 to 11, wherein the virus comprising nucleic acid encoding an immunomodulatory factor comprises nucleic acid encoding a thymidine kinase.
13. The method of any one of paras 1 to 12, wherein the at least one cell comprising a CAR specific for a cancer cell antigen is a T cell.
14. The method of any one of paras 1 to 13, wherein the CAR comprises an antigen binding domain capable of specific binding to HER2.
15. The method of any one of paras 1 to 14, wherein the CAR comprises an antigen binding domain comprising: [0431] a VL domain comprising: [0432] LC-CRD1: SEQ ID NO:10; [0433] LC-CRD2: SEQ ID NO:11; [0434] LC-CRD3: SEQ ID NO:12; [0435] and a VH domain comprising: [0436] HC-CRD1: SEQ ID NO:13; [0437] HC-CRD2: SEQ ID NO:14; [0438] HC-CRD3: SEQ ID NO:15;
or [0439] a VL domain comprising: [0440] LC-CRD1: SEQ ID NO:18; [0441] LC-CRD2: SEQ ID NO:19; [0442] LC-CRD3: SEQ ID NO:20; [0443] and a VH domain comprising: [0444] HC-CRD1: SEQ ID NO:21; [0445] HC-CRD2: SEQ ID NO:22; [0446] HC-CRD3: SEQ ID NO:23;
or [0447] a VL domain comprising: [0448] LC-CRD1: SEQ ID NO:26; [0449] LC-CRD2: SEQ ID NO:27; [0450] LC-CRD3: SEQ ID NO:28; [0451] and a VH domain comprising: [0452] HC-CRD1: SEQ ID NO:29; [0453] HC-CRD2: SEQ ID NO:30; [0454] HC-CRD3: SEQ ID NO:31.
16. The method of any one of paras 1 to 15, wherein the CAR comprises an antigen binding domain comprising: [0455] a VL comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:16 and a VH comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:17;
or [0456] a VL comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:24 and a VH comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:25;
or [0457] a VL comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:32 and a VH comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:33.
17. The method of any one of paras 1 to 16, wherein the method additionally comprises: [0458] (a) isolating at least one cell from a subject; [0459] (b) modifying the at least one cell to express or comprise a CAR specific for a cancer cell antigen, or a nucleic acid encoding a CAR specific for a cancer cell antigen, [0460] (c) optionally expanding the modified at least one cell, and; [0461] (d) administering the modified at least one cell to a subject.
18. The method of any one of paras 1 to 17, wherein the cancer is selected from head and neck cancer, nasopharyngeal carcinoma (NPC), cervical carcinoma (CC), oropharyngeal carcinoma (OPC), gastric carcinoma (GC), hepatocellular carcinoma (HCC) and lung cancer.
19. An oncolytic adenovirus (OncAd) encoding an E1A protein comprising, or consisting of, the amino acid sequence SEQ ID NO:34.
20. An oncolytic adenovirus (OncAd) comprising nucleic acid having one or more binding sites for STAT1.
21. The OncAd according to para 20, wherein the OncAd comprises a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:51 or an equivalent sequence as a result of codon degeneracy.
22. A helper-dependent adenovirus (HDAd) comprising nucleic acid encoding IL-12 and/or antagonist anti-PD-L1 antibody.
23. The HDAd according to para 22, wherein the HDAd additionally comprises nucleic acid encoding a thymidine kinase.
24. A chimeric antigen receptor (CAR) comprising an antigen binding domain comprising: [0462] a VL domain comprising: [0463] LC-CRD1: SEQ ID NO:10; [0464] LC-CRD2: SEQ ID NO:11; [0465] LC-CRD3: SEQ ID NO:12; [0466] and a VH domain comprising: [0467] HC-CRD1: SEQ ID NO:13; [0468] HC-CRD2: SEQ ID NO:14; [0469] HC-CRD3: SEQ ID NO:15;
or [0470] a VL domain comprising: [0471] LC-CRD1: SEQ ID NO:18; [0472] LC-CRD2: SEQ ID NO:19; [0473] LC-CRD3: SEQ ID NO:20; [0474] and a VH domain comprising: [0475] HC-CRD1: SEQ ID NO:21; [0476] HC-CRD2: SEQ ID NO:22; [0477] HC-CRD3: SEQ ID NO:23;
or [0478] a VL domain comprising: [0479] LC-CRD1: SEQ ID NO:26; [0480] LC-CRD2: SEQ ID NO:27; [0481] LC-CRD3: SEQ ID NO:28; [0482] and a VH domain comprising: [0483] HC-CRD1: SEQ ID NO:29; [0484] HC-CRD2: SEQ ID NO:30; [0485] HC-CRD3: SEQ ID NO:31.
25. The CAR according to para 24, wherein the CAR comprises an antigen binding domain comprising: [0486] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:16 and a VH comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:17;
or [0487] a VL comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:24 and a VH comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:25:
or [0488] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:32 and a VH comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:33.
26. A nucleic acid, optionally isolated or man-made, encoding the oncolytic adenovirus (OncAd) according to any one of paras 19 to 21, the helper-dependent adenovirus (HDAd) according to para 22 or para 23, or the chimeric antigen receptor (CAR) according to para 24 or para 25.
27. A cell comprising the oncolytic adenovirus (OncAd) according to any one of paras 19 to 21, the helper-dependent adenovirus (HDAd) according to para 22 or para 23, the chimeric antigen receptor (CAR) according to para 24 or para 25, or the nucleic acid according to para 26, optionally wherein the cell is man-made and not found in nature.
28. A pharmaceutical composition comprising the oncolytic adenovirus (OncAd) according to any one of paras 19 to 21, the helper-dependent adenovirus (HDAd) according to para 22 or para 23, the chimeric antigen receptor (CAR) according to para 24 or para 25, the nucleic acid according to para 26 or the cell according to para 27 and a pharmaceutically acceptable carrier, diluent, excipient or adjuvant.
29. A method of treating cancer comprising administering to a subject the oncolytic adenovirus (OncAd) according to any one of paras 19 to 21, the helper-dependent adenovirus (HDAd) according to para 22 or para 23, the chimeric antigen receptor (CAR) according to para 24 or para 25, the nucleic acid according to para 26, the cell according to para 27 or the pharmaceutical composition according to para 28.
30. The oncolytic adenovirus (OncAd) according to any one of paras 19 to 21, the helper-dependent adenovirus (HDAd) according to para 22 or para 23, the chimeric antigen receptor (CAR) according to para 24 or para 25, the nucleic acid according to para 26, the cell according to para 27 or the pharmaceutical composition according to para 28 for use in a method of treating a cancer.
31. Use of the oncolytic adenovirus (OncAd) according to any one of paras 19 to 21, the helper-dependent adenovirus (HDAd) according to para 22 or para 23, the chimeric antigen receptor (CAR) according to para 24 or para 25, the nucleic acid according to para 26, the cell according to para 27 or the pharmaceutical composition according to para 28 in the manufacture of a medicament for treating a cancer.
32. The method, the use or the use according to any one of paras 29 to 31, wherein the cancer is selected from head and neck cancer, nasopharyngeal carcinoma (NPC), cervical carcinoma (CC), oropharyngeal carcinoma (OPC), gastric carcinoma (GC), hepatocellular carcinoma (HCC) and lung cancer.
33. A kit of parts comprising a predetermined quantity of the oncolytic adenovirus (OncAd) according to any one of paras 19 to 21, the helper-dependent adenovirus (HDAd) according to para 22 or para 23, the chimeric antigen receptor (CAR) according to para 24 or para 25, the nucleic acid according to para 26, the cell according to para 27 or the pharmaceutical composition according to para 28.
EXAMPLES
[0489] In the following Examples, the inventors describe the generation functional characterisation of novel HER-2 specific CARs and CAR-T cells, oncolytic adenoviruses and helper-dependent adenovirus.
Example 1: HER2-Specific CAR-T Cells
1.1 Generation of HER2-Specific CAR Constructs and CAR-T Cells
[0490] HER2-binding CAR constructs were prepared. Briefly, DNA encoding scFv (i.e. VL domain and VH domain joined by a linker sequence) for the anti-HER2 antibody clone C5. E4, F1 or A3 was cloned into a CAR construct backbone comprising a 5 signal peptide (SP), and CD28 transmembrane (TM) and intracellular domain sequence, with a 3 CD34 intracellular domain sequence. The three HER2-binding CAR constructs are represented schematically in
[0491] HER2 specific CAR-T cells were generated as represented graphically in
[0492] T-cells were thawed and expanded in the presence of 100 IU/mL of recombinant human IL-2 for 5 days and used for in vitro/in vive experiments and phenotypic analysis.
1.2 Characterisation of the HER2-Specific CAR-T Cells
[0493] 1.2.1 Expression of Surface Markers and HER2 CARs T cells transduced with HER2 CAR construct encoding scFv for anti-HER2 antibody clone E4 were characterised by flow cytometry for expression of different cell surface molecules. Expanded HER2 specific CAR T-cells were stained with fluorescently-labelled monoclonal antibodies for 30 minutes at 4 C. Discrimination of live/dead cells was achieved by including 7AAD in stainings (BD Pharmingen). Stained cells were analyzed using a Gallios flow cytometer and Kaluza software (BD Bioscience), according to manufacturer's instructions.
[0494] The results are shown in
[0495]
1.2.2 Cell Killing Activity
[0496] The HER2-CAR-T cells were analysed for their ability to kill HER2 expressing cancer cells in vitro in cell killing assays.
[0497] In a first experiment, cells of the HER2 negative MDA cell line (negative control), MDA cells stably expressing HER2 (MDA-HER2; positive control), pharynx squamous cell carcinoma cell line FaDu or the head and neck squamous carcinoma cell line SCC47 cells were labelled with Chromium-51 (.sup.51Cr) and co-cultured with non-transduced T-cells (NT) or the HER2-CAR-T cells expressing the indicated CARs at an effector:target cell ratio of 20:1 for 4 hours. After centrifugation, .sup.51Cr levels in the cell culture media were counted using a liquid scintillation counter. The results are shown in
[0498] Expression of HER2 on MDA-HER2, FaDu and SCC47 was confirmed by flow cytometry. Briefly, the cells were were stained with fluorescently-labelled monoclonal anti-HER2 antibody or isotype control antibody for 30 minutes at 4 C. Discrimination of live/dead cells was achieved by including 7AAD in stainings (BD Pharmingen). Stained cells were analyzed using a Gallios flow cytometer and Kaluza software (BD Bioscience), according to manufacturer's instructions. The results are shown in
[0499] In a separate experiment, FaDu and SCC47 cells genetically modified to express firefly luciferase (ffluc) were seeded in wells of 24-well plates, and co-cultured with HER2(C5)-CAR-T cells, HER2(E4)-CAR-T cells, or HER2(F1)-CAR-T cells at an effector:target cell ratio of 1:5 for 3 days, and ffLuc activity was measured using a plate reader (Life Technologies). The results are shown in
Example 2: OncAd Constructs
2.1 Generation of OncAd Constructs
[0500] Novel constructs encoding oncolytic adenovirus are prepared using recombinant DNA techniques.
[0501] In particular embodiments, an OncAd is produced upon modification of a known virus. For example, a region encoding E1A protein from adenovirus 5, such as one lacking the sequence LTCHEACF (SEQ ID NO:52) involved in binding the Rb protein, is replaced with sequence encoding E1A protein from adenovirus 2, similarly lacking the sequence LTCHEACF (SEQ ID NO:52).
[0502] ICOSTAT shown in
[0503] Onc5/3Ad2E124 (also referred to herein as Onc5/2E124 shown in SEQ ID NO:55 and represented schematically in
2.2 Cell Killing Activity
[0504] The ability of an oncolytic adenovirus of choice or ICOSTAT as generated in Example 2.1 to kill cancer cells may be analysed for example by MTS assay. Briefly, cells of the human alveolar basal epithelial adenocarcinoma cell line A549 cells, FaDu cells, SCC47 cells, or non-cancerous WI-38 human lung fibroblasts or ARPE-19 human retinal pigmented epithelial cells were seeded in wells of 96-well plates and infected with different amounts of a helper-dependent, non-replicating adenovirus (HDAd; as a negative control), an oncolytic adenovirus of choice (e.g. Onc5/3Ad2E124 described in Example 2.1), or ICOSTAT described in Example 2.1 above.
[0505] Cells may be cultured for 4 days, for example, and then MTS reagents (Promega) may be added to each well, with cells being incubated at 37 C. for 2 hours. Live cells may be analyzed by measuring the absorbance at 490 nm with a plate reader. Readings may be normalized using the readings for untreated cells of each type (i.e. untreated cells=100% cell viability), and wells lacking cells would be considered 0%.
[0506] In particular embodiments, the oncolytic virus of choice is able to kill cancer cells in a dose-dependent manner. The oncolytic virus of choice also exhibits a lower level of cell killing of non-cancerous cells, such as WI-38 and ARPE-19 cells as compared to the level of killing by the virus of cancerous cells, in specific embodiments.
[0507]
[0508]
2.3 Ability to Help Helper-Dependent Adenovirus (HDAd)
[0509] The ability of an oncolytic adenovirus of choice or ICOSTAT as generated in Example 2.1 to assist replication of a helper-dependent adenovirus (HDAd) may be analysed by co-infecting cancer cells with the OncoAd and HDAd, and determining virus copy number. Briefly, FaDu or SCC47 cells are plated in 24-well plates and infected with 10 viral particles per cell of HDAd alone, or OncAd+HDAd (at an OncAd:HDAd ratio of 1:10). Cells are harvested at 48 hours post-infection, DNA is extracted and both HDAd and Onc.Ad vector copies are analyzed by quantitative real-time PCR (10 min at 95 C. and then 45 cycles of 10 s at 95 C., 15 s at 60 C., and 30 s at 72 C.) using a Bio-Rad iQ5 real-time PCR detection system (Bio-Rad), and Applied Biosystems SYBR green PCR master mix (Life Technologies). Copy number is normalized using copy number detected for GAPDH.
[0510] In particular embodiments, the oncolytic virus of choice is able to replicate itself and the HDAd sufficiently.
[0511]
2.4 Effect of IFN on Replication of ICOSTAT in Cancer Cells
[0512] The effect of IFN treatment on replication of ICOSTAT OncAd was analysed. Briefly, FaDu and SCC47 cells are plated in 24-well plates, and the cells are infected with 10 vp/cell of the oncolytic virus of choice or icoSTAT 3 hours post-infection cell culture medium is replaced with medium containing, or not containing, 10 ng/mL recombinant IFN at 3 hours post-infection, and cell culture media are replaced with fresh media with/without 10 ng/mL recombinant IFN again at 24 and 48 hours post-infection. Cells are harvested at 3, 24, 48 and 72 hours post-infection, DNA is extracted from the cells, viral copy numbers are analysed by quantitative real-time PCR and normalized using copy number detected for GAPDH.
[0513]
Example 3: Helper-Dependent Ad (HDAd) Constructs
3.1 HDAd Constructs and Production
[0514] A novel construct encoding a helper-dependent adenovirus was prepared using recombinant DNA techniques. The coding sequence of the resulting construct designated HDAdIL-12_TK_PD-L1 is represented schematically in
[0515] The HDAd HD28E4EGFP construct containing an EGFP transgene driven by the CMV promoter (HDAdeGFP) was produced as described in Farzad et al. Oncolytics 2014 1: 14008.
[0516] The HDAd HDIL12_PDL1 contains sequence encoding human IL-12p70 protein and anti-PD-L1 minibody derived from YW243.55.S70 (atezolizumab). The anti-PD-L1 minibody of this construct consists of scFv for YW243.55.S70 fused with a hinge, CH2 and CH3 regions of human IgG1 and a C-terminal HA tag (as described e.g. in Tanoue et al. Cancer Res. (2017) 77(8):2040-2051).
3.2 Expression of Encoded Proteins
[0517] Cancer cells were transfected with plasmid HDAd vectors, and medium samples were collected to analyze IL-12p70 and anti-PD-L1 minibody levels in the cell culture media of the transfected cells at 48 hours post-transfection.
[0518] IL-12p70 levels in media were measured using the BD cytokine multiplex bead array system (BD Biosciences), according to manufacturer's instructions. The results are shown in
[0519] Secretion of anti-PD-L1 minibodies into the cell culture medium was detected by western blot analysis, using an anti-HA antibody (to detect the HA-tagged minibodies).
[0520] In another experiment, cells were transfected with the different constructs and at 8 hours post-transfection the cell culture media was replaced with medium containing 10 ng/ml Ganciclovir (GCV). Cell culture medium was then replaced with medium containing 10 ng/ml every 24 hours, and after 7 days, the wells were stained with Crystal Violet solution to reveal viable cells.
[0521] The results are shown in
[0522] In further experiments A549, FaDu or SCC47 cells (n=4 wells per condition) were infected in vitro with HDAdIL-12_TK_PD-L1, HDAd_PD-L1 (see e.g. Tanoue et al., supra), or a control HDAd encoding eGFP (see Farzad et al., supra). The cells were either cultured for 48 hours in the absence of ganciclovir, or medium was changed at 8 hours post-infection and every 24 hours thereafter with medium containing 10 ng/ml ganciclovir.
[0523] Secretion of IL-12 into the cell culture supernatant was analysed by ELISA, and secretion of anti-PD-L1 minibody was analysed by western blot using an anti-HA antibody (the anti-PD-L1 minibody comprises a C-terminal HA-tag). At the end of the experiment wells were stained with Crystal Violet solution to reveal viable cells.
[0524] The results are shown in
3.3 Confirmation of Anti-PD-L1 Minibody Binding to PD-L1
[0525] The ability of the anti-PD-L1 minibody encoded by HDAdIL-12_TK_PD-L1 to bind to PD-L1 was analysed by ELISA.
[0526] Briefly, Immulon 2 high binding 96-well plates (VWR) were coated with 500 ng/well of recombinant human PD-L1 (BioVision). After blocking plate with PBS-T containing 3% BSA, serially diluted cell culture media of A549 cells which had been transfected with plasmid encoding GFP (pGFP; negative control), plasmid encoding the anti-PD-L1 minibody described in Tanoue et al. supra. (pPDL1 mini Tanoue) or plasmid encoding the anti-PD-L1 minibody encoded by HDAdIL-12_TK_PD-L1 (pPDL1 mini) were added and incubated at 4 C. for 24 hours. Serially diluted anti-human PD-L1 antibody starting from 10 g/well (BioLegend) was used as a positive control (PDL1 IgG). After washing plate with PBS-T, HRP-labeled anti-human IgG (for PD-L1 mini and PDL1 mini Tanoue) or HRP-labeled anti-mouse IgG (BioRad; for PD-L1 IgG and Iso IgG) were added for detection, and incubated at room temperature for 1 hour. The plate was then developed, and absorbance at 450 nm was measured using Tecan reader (TECAN).
[0527] The results are shown in
Example 4: Analysis of Treatment of Cancer In Vivo
[0528] The anticancer effect of treatment with the combination of (1) an oncolytic virus of choice+HDAdIL-12_TK_PD-L1+HER2-CAR-T and (2) ICOSTAT+HDAdIL-12_TK_PD-L1+HER2-CAR-T is demonstrated in vivo in mouse xenograt tumour models.
[0529] In a first experiment, 110.sup.6 FaDu cells are injected subcutaneously in PBS into NSG male mice. After 12 days, 110.sup.6 viral particles (1) oncolytic virus and HDAdIL-12_TK_PD-L1 or (2) ICOSTAT+HDAdIL-12_TK_PD-L1 are injected intratumorally at an OncAd:HDAd ratio of 1:20.
[0530] In a second experiment. 0.510.sup.6 FaDu cells are injected orthotopically into NSG male mice. After 6 days, 110.sup.6 viral particles (1) oncolytic virus and HDAdIL-12_TK_PD-L1 or (2) ICOSTAT+HDAdIL-12_TK_PD-L1 are injected intratumorally at an OncAd:HDAd ratio of 1:20.
[0531] In both experiments, 3 days after administration of the viral particles, 110.sup.6 HER2-CAR T cells are administered intravenously.
[0532] In both experiments, control conditions are included as follows:
TABLE-US-00002 Condition OncAd HDAd CAR T 1 Of choice HDAdIL-12_TK_PD-L1 HER2 CAR-T (test condition) 2 ICOSTAT HDAdIL-12_TK_PD-L1 HER2 CAR-T (test condition) 3 HDAdIL-12_TK_PD-L1 HER2 CAR-T 4 Of choice HER2 CAR-T 5 ICOSTAT HER2 CAR-T 6 Of choice HDAdIL-12_TK_PD-L1 7 ICOSTAT HDAdIL-12_TK_PD-L1 8 Of choice 9 ICOSTAT 10 HDAdIL-12_TK_PD-L1 11 HER2 CAR-T
[0533] Tumor size is monitored and tumour volumes are calculated using the formula: Width.sup.2Length0.5.
[0534] The use of the combination of oncolytic virus, HDAdIL-12_TK_PD-L1 and HER2 CAR-T (test condition 1) is found to have an improved antitumour effect as compared to the use of any of the agents alone (conditions 8, 10 or 11), or compared to the use of two of the three agents (conditions 3, 4 and 6).
[0535] Similarly, the use of the combination of ICOSTAT, HDAdIL-12_TK_PD-L1 and HER2 CAR-T (test condition 2) is found to have an improved antitumour effect as compared to the use of any of the agents alone (conditions 9, 10 or 11), or compared to the use of two of the three agents (conditions 3, 5 and 7).
[0536] Similar results are observed when xenograft tumours are established using SCC47 cells and A549 cells.
Example 5: Analysis of the Anti-Cancer Activity of the HER2-Specific CAR-T Cells In Vivo
[0537] The anti-cancer activity of the HER2-specific CAR-T cells (see Example 1 above) was investigated in vivo in a FaDu cell-derived xenograft model of squamous cell head and neck cancer.
[0538] Briefly, 0.510.sup.6 FaDu cells were injected orthotopically into NSG male mice. After 9 days, mice were injected via the tail vein with 110.sup.6 T cells genetically modified to express firefly luciferase, which had not been transduced with a HER2-CAR construct, or with 110.sup.6 firefly luciferase-expressing T cells which had been transduced with the C5, F1 or A3 CAR constructs. A control condition was included in the experiment in which mice were not injected with T cells at day 9.
[0539] Luciferase activity (and thus number and distribution of the administered T cells), body weight, survival of the mice was monitored over time. Luciferase activity was monitored by intraperitoneal injection of D-Luciferin (1.5 mg per mouse), and imaging of the mice 10 min later using an IVIS imager (Xenogen).
[0540]
[0541]
[0542] In a separate experiment NOD scid gamma (NSG) mice were injected via the tail vein with 110.sup.6 firefly luciferase-expressing T cells which had not been transduced with a HER2-CAR construct, or with 110.sup.6 firefly luciferase-expressing T cells which had been transduced with the C5, F1 or A3 CAR construct. Luciferase activity was monitored as described above, and body weight of the mice was also monitored overtime.
[0543] The results of the experiment are shown in
Example 6: Analysis of the Anti-Cancer Activity of the Combination of Oncolytic Virus. HDAd Virus and HER2-Specific CAR-T Cells In Vivo
[0544] The anti-cancer activity of a combination of oncolytic virus. HdAd and HER-specific CAR-T cell therapy was investigated in vivo in a FaDu cell-derived xenograft model of squamous cell head and neck cancer.
[0545] Briefly, 0.510.sup.6 FaDu cells were injected orthotopically into NSG male mice. After 6 days, one group of mice was then injected intratumorally with a combination of Onc5/3Ad2E124 (described in Example 2.1) and HDAdIL-12_TK_PD-L1 described in Example 3.1 (this combination of OncAd and HdAd is referred to herein as CAdtrio). A total of 110.sup.7 viral particles were administered, at a 1:10 ratio of Onc5/3Ad2E124:HDAdIL-12 TK_PD-L1.
[0546] Three days later, mice were injected via the tail vein with 110.sup.6 T cells engineered to express firefly luciferase, which had been transduced with the HER2-specific CAR construct corresponding to clone F1. A control group of mice which had not been administered with CAdtrio was injected via the tail vein with 110.sup.6 firefly luciferase-expressing T cells which had not been transduced with a HER2-CAR construct, and a further control group of mice was not administered with CAdtrio nor injected with T cells. Luciferase activity, body weight and survival of the mice was monitored over time.
[0547] Prior to their use in the experiment the F1.CART cells were characterised flow cytometry, and the results are shown in
[0548] The results of the experiments analysing the therapeutic efficacy of the combination of oncolytic virus, HDAd virus and HER2-specific CAR-T cells to treat cancer in vivo are shown in
[0549] In further experiments two different ratios of Onc5/3Ad2E124 to HDAdIL-12_TK_PD-L1 were investigated.
[0550] Briefly, 0.510.sup.6 FaDu cells modified to express firefly luciferase were injected orthotopically into NSG male mice. After 6 days, mice were injected intratumorally with: [0551] (i) 110.sup.7 viral particles of CAdtrio, at a ratio of Onc5/3Ad2E124:HDAdIL-12_TK_PD-L1 of 1:10; [0552] (ii) 110.sup.7 viral particles of CAdtrio, at a ratio of Onc5/3Ad2E124:HDAdIL-12_TK_PD-L1 of 1:20; [0553] (iii) 110.sup.6 viral particles of CAdtrio, at a ratio of Onc5/3Ad2E124:HDAdIL-12_TK_PD-L1 of 1:10; or [0554] (iv) 110.sup.6 viral particles of CAdtrio, at a ratio of Onc5/3Ad2E124:HDAdIL-12_TK_PD-L1 of 1:20.
[0555] Three days later, mice were injected via the tail vein with 110.sup.6 T cells which had been transduced with the F1 CAR construct (not expressing firefly luciferase). The cancer was monitored over time by analysis of luciferase activity as described above, and the body weight of the mice was also monitored.
[0556] The results of the experiments are shown in
Example 7: Analysis of the Anti-Cancer Activity of the Combination of Oncolytic Virus, HDAd Virus and Ganciclovir (GCV) In Vivo
[0557] The anti-cancer activity of a combination of oncolytic virus and HdAd (encoding thymidine kinase) (I,e, CAdtrio) in conjunction with ganciclovir (GCV) was investigated in vivo in a FaDu cell-derived xenograft model of squamous cell head and neck cancer.
[0558] Ectopic FaDu tumors were established by subcutaneous injection of FaDu cells into the flanks of mice. The mice were subsequently injected intratumorally with 110.sup.6 viral particles of CAdtrio, at a ratio of Onc5/3Ad2E124:HDAdIL-12_TK_PD-L1 of 1:10. One group of mice (n=5) was then injected intraperitoneally on days 2, 3, 4, 5, 7, 10, 14, 17 and 21 days after CAdtrio injection with 10 mg/kg of ganciclovir.
[0559] Blood samples were collected from the mice on days 2, 7, 14 and 21 and analysed by ELISA for IL-12 expression. Tumor volumes were monitored throughout the experiment. At day 22 Onc.Ad and HDAd vector copy numbers were determined in DNA extracted from the tumors by quantitative real-time PCR analysis, and normalised using the copy number detected for GAPDH.
[0560] The results of the experiments are shown in
Example 8: Generation of Oncolytic Virus-Specific T Cells and HER-Specific CAR-Expressing Oncolytic Virus-Specific T Cells
8.1 Generation and Characterisation of Oncolytic Virus-Specific T Cells
[0561] Adenovirus-specific T cells (AdVSTs) and activated T cells (ATCs) were prepared as follows.
[0562] Anti-CD3 (clone OKT3) and anti-CD28 agonist antibodies were coated onto wells of tissue culture plates by addition of 0.5 ml of 1:1000 dilution of 1 mg/ml antibodies, and incubation for 2-4 hr at 37 C., or at 4 C. overnight.
[0563] PBMCs were isolated from blood samples obtained from healthy donors according to the standard Ficoll-Paque method.
ATCs:
[0564] 110.sup.6 PBMCs (in 2 ml of cell culture medium) were stimulated by culture on the anti-CD3/CD28 agonist antibody-coated plates in CTL cell culture medium (containing 50% Advanced RPMI, 50% Click's medium, 10% FBS, 1% GlutaMax, 1% Pen/Strep) supplemented with 10 ng/ml IL-7 and 5 ng/ml IL-15. The cells were maintained at 37 C. in a 5% CO.sub.2 atmosphere. The next day, 1 ml of the cell culture medium was replaced with fresh CTL medium containing 20 ng/ml IL-7 and 10 ng/ml IL-15.
[0565] ATCs were maintained in culture, and subsequently harvested and used in experiments or cryopreserved between days 5-7.
AdVSTs:
[0566] 110.sup.6 PBMCs (in 2 ml of cell culture medium) were stimulated by culture on the anti-CD3/CD28 agonist antibody-coated plates in CTL cell culture medium supplemented with 10 ng/ml IL-7 and 100 ng/ml IL-15.
[0567] 20 l of a 200-fold dilution of Adenovirus-specific Hexon Pepmix (JPT Cat# PM-HAdV3) or Penton PepMix (JPT Cat# PM-HAdV5) was added to the wells. The cells were maintained at 37 C. in a 5% CO.sub.2 atmosphere. After 48 hours cells were fed with CTL medium, with added IL-7 and IL-15 to a final concentration of 10 ng/ml IL-7 and 100 ng/ml IL-15.
8.2 Generation of CAR-Expressing, Oncolytic Virus-Specific T Cells
[0568] On day 3, AdVSTs were resuspended at a concentration of 0.12510.sup.6 cells/ml in CTL cell culture medium containing 10 ng/ml IL-7 and 100 ng/ml IL-15.
[0569] Retronectin coated plates were prepared by incubation of RetroNectin (Clontech) diluted 1:100 in PBS for 2-4 hr at 37 C., or at 4 C. overnight. The wells were washed with CTL medium, 1 ml of retroviral supernatant of HER2-specific CAR retrovirus was added to wells, and plates were centrifuged at 2000 g for 1.5 hr. At the end of the centrifugation step retroviral supernatant was aspirated, and 2 ml of AdVST suspension (i.e. 0.2510.sup.6 cells) was added to wells of the plate. Plates were centrifuged at 400 g for 5 min, and incubated at 37 C. in a 5% CO.sub.2 atmosphere.
[0570] After 48 hrs (i.e. on day 6) the cell culture medium was aspirated and replaced with CTL cell culture medium containing 10 ng/ml IL-7 and 100 ng/ml IL-15.
[0571] On day 9 cells were harvested and used in experiments or cryopreserved, or subjected to a second stimulation to expand CAR-expressing AdVSTs (see Example 8.3).
8.3 Expansion of AdVSTs and CAR-AdVSTs
[0572] AdVSTs and CAR-expressing AdVSTs were expanded by further stimulations as desired, as follows.
[0573] Pepmix-pulsed autologous ATCs were used as APCs, and K562cs cells (see e.g. Ngo et al., J Immunother. (2014) 37(4):193-203) were used as costimulatory cells. The final ratio of AdVSTs or CAR-AdVSTs-ATCs:K562cs cells in the stimulation cultures was 1:1:3-5.
[0574] AdVSTs or CAR-AdVSTs were resuspended to a concentration of 0.210.sup.6 cells/ml in CTL medium.
[0575] 110.sup.6 ATCs were incubated with 10 l of 200-fold dilution of Adenovirus-specific Hexon Pepmix (JPT Cat# PM-HAdV3) or Penton PepMix (JPT Cat# PM-HAdV5) at 37 C. for 30 min. The ATCs were subsequently irradiated at 30 Gy and harvested. 3-510.sup.6 K562cs cells were irradiated at 100 Gy.
[0576] The ATCs and K562cs cells were then mixed in a total volume of 5 ml CTL medium, and 20 ng/ml IL-7 and 200 ng/ml IL-15 was added, 1 ml of this mixture was added to wells of a 24 well plate, and 1 ml of AdVST suspension or CAR-AdVST suspension was added to the wells.
[0577] Cells were maintained at 37 C. in a 5% CO.sub.2 atmosphere. After 3-4 days cell culture medium was added as necessary, and after 6-7 days cells the expanded AdVSTs or CAR-AdVSTs were harvested for use in experiments.
Example 9: Analysis of the Anti-Cancer Activity of Combinations of Oncolytic Virus, HDAd, Oncolytic Virus-Specific T Cells and CAR-Expressing Oncolytic Virus-Specific T Cells In Vivo
[0578] The anti-cancer activity of different combinations of oncolytic virus, HDAd, oncolytic virus-specific T cells and CAR-expressing oncolytic virus-specific T cells was investigated in vivo in a FaDu cell-derived xenograft model of squamous cell head and neck cancer.
[0579] Briefly, 0.510.sup.6 FaDu cells engineered to express firefly luciferase were injected orthotopically into NSG male mice. After 6 days groups of mice were injected intratumorally with: [0580] (i) 110.sup.7 viral particles of CAdtrio, at a ratio of Onc5/3Ad2E124:HDAdIL-12_TK_PD-L1 of 1:10; or [0581] (ii) 110.sup.7 viral particles of Onc5/3Ad2E124.
[0582] Three days later, mice were injected via the tail vein with: [0583] (a) 110.sup.6 AdVSTs, or [0584] (b) 110.sup.6 AdVSTs transduced with anti-HER2 CAR clone F1 (prepared as described in Example 8).
[0585] Prior to their use in the experiment the AdVSTs and F1.CAR-AdVSTs were characterised by flow cytometry, and the results of the analysis are shown in
[0586] The cancer was monitored over time by analysis of luciferase activity as described above, and the body weight of the mice was also monitored.
[0587] The results of the experiments are shown in