Modified collagen protein and application of same
11697679 · 2023-07-11
Assignee
Inventors
Cpc classification
C07K14/78
CHEMISTRY; METALLURGY
C12N2525/00
CHEMISTRY; METALLURGY
C07K2319/60
CHEMISTRY; METALLURGY
C12N15/63
CHEMISTRY; METALLURGY
C12N5/10
CHEMISTRY; METALLURGY
A61P43/00
HUMAN NECESSITIES
A01K2207/12
HUMAN NECESSITIES
C07K19/00
CHEMISTRY; METALLURGY
C07K2319/40
CHEMISTRY; METALLURGY
A01K67/0271
HUMAN NECESSITIES
C12N15/8509
CHEMISTRY; METALLURGY
A61K38/39
HUMAN NECESSITIES
C12N5/0654
CHEMISTRY; METALLURGY
C12M3/00
CHEMISTRY; METALLURGY
C12N2527/00
CHEMISTRY; METALLURGY
International classification
C07K14/78
CHEMISTRY; METALLURGY
A61K38/39
HUMAN NECESSITIES
C07K19/00
CHEMISTRY; METALLURGY
C12N15/63
CHEMISTRY; METALLURGY
Abstract
In order to develop tools and methods useful in a variety of applications, including the research and development of medical treatments which involve the modification of collagen protein and use of the same, the present invention provides a modified collagen protein expressed in a transformed cell and capable of forming collagen fibers outside of the cell, wherein the transformation is performed by introducing, into the cell, polynucleotides coding the modified collagen protein.
Claims
1. A modified collagen protein that comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 2 and 4 or an amino acid sequence having at least 90% identity therewith.
2. A polynucleotide encoding the modified collagen protein according to claim 1.
3. The polynucleotide of claim 2 comprising the nucleotide sequence selected from the group consisting of SEQ ID NO: 1 and SEQ ID NO: 3 or a nucleotide sequence having at least 90% identity therewith.
4. An expression vector comprising the polynucleotide according to claim 2.
5. An expression cell line comprising the polynucleotide according to claim 2 or the expression vector according to claim 4.
6. A collagen-coated dish coated with the expression cell line according to claim 5.
7. A method for screening for an inhibitor of collagen secretion and/or collagen fiber formation, comprising the steps of: culturing the expression cell line according to claim 5 under stress conditions in vitro; adding to said culture a candidate agent of said inhibitor before the culturing under said stress conditions; observing said expression cell line for collagen secretion and/or collagen fiber formation outside of said cell after said addition of said candidate agent in said culture; and selecting as said inhibitor said candidate agent having an effect of reducing said collagen secretion and/or collagen fiber formation as compared to the absence of said addition of said candidate agent.
8. The method according to claim 7, wherein said selecting comprises visualizing or imaging to detect labeling of the collagen and/or collagen fiber.
9. A method of forming a collagen fiber comprising a modified collagen protein, wherein said method comprises introducing the polynucleotide of claim 2 into a cell in vitro and culturing said cell under stress to form an extracellular collagen fiber.
10. The method according to claim 9, wherein said method further comprises visualizing or imaging to detect labeling of the collagen fiber.
11. A composition comprising the modified collagen protein according to claim 1.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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EMBODIMENTS FOR CARRYING OUT THE INVENTION
(19) “Collagen” and “collagen protein” are used herein as being synonymous.
(20) The collagen used according to the purpose of the present invention is preferably collagen in which at least one of the N-terminus and the C-terminus (i.e., a portion which is arranged toward outside the fiber at the time of formation of the collagen fiber and to which the foreign protein or the like is easily added) is not cut or removed when secreted to the outside of the cell. Examples of such collagens include Type V collagen and Type XI collagen. As Type V collagen, Type V al and Type V a3 collagen are preferable, and as Type XI collagen, Type XI al and Type XI a2 collagen are preferable. The amino acid sequences of these collagens and the nucleotide sequences encoding them are available from well-known, commonly accessible databases.
(21) As used herein, “modification” of a collagen protein means primarily an insertion or addition of a foreign protein to native collagen, of which, in particular, the insertion or addition of such foreign protein does not substantially impair the function of the original collagen protein (e.g., the ability to form collagen fibers). Insertion or addition of such foreign proteins into native collagen can be accomplished by conventional gene transfer techniques well known to those skilled in the art. The terms “insertion” and “addition” are used interchangeably herein to refer to the insertion or addition of a foreign amino acid sequence to a collagen protein, or the insertion or addition of a foreign nucleotide sequence to a nucleotide sequence encoding the collagen protein. As used herein, “transformation” of a cell is used synonymously with “transfection” to mean the introduction of genes or DNAs from outside the cell, altering the genetic properties of the cell, or manipulation thereof.
(22) Preferred sites of “modification” of collagen proteins according to the purposes of the present invention are those sites where collagen proteins are less likely to have a substantial effect on fiber formation when forming fibers, and preferably, for example, the N-terminal and C-terminal regions of collagen proteins that are arranged toward outside the fibers when forming collagen fibers as described above and to which foreign proteins or the like are likely to be easily added.
(23) In the exemplary embodiment described below, an example has been presented in which the foreign protein has been inserted into a site within the region between the N-terminal domain (N-terminal propeptide) and the hinge portion of Type V α1 collagen (a site between positions 1750 and 1751 in the nucleotide sequence (XM_006497644) encoding Type Vα1 collagen (corresponding to a site between the 443 and 444 amino acid residues within the amino acid sequence (XP_006497707) that is coded by the nucleotide sequence). Besides, examples of collagen proteins having a preferable site for such modification include Type V α3 collagen, Type XI α1 and Type XI α2 collagens described above. Suitable sites for the insertion of foreign proteins in these collagens may be derived by those skilled in the art without undue experimentation from the guidance herein and the common general knowledge in the art.
(24) The “foreign proteins” described above suitable for the present purposes include labeling proteins such as fluorescent proteins (e.g., GFP, iRFP, HaloTag7), luminescent proteins such as luciferases (e.g., Luc(+), Luc2, CBGluc, CBRluc, ELuc, SLR, SLO, SLG (Akimoto et al, Biophysics 49(2), 070-074 (2009); incorporated herein by reference in its entirety)), proteins used for the treatment of diseases (e.g., antibodies) or peptides (e.g., special peptides synthesized so as not to be easily degraded in vivo). The above-mentioned fluorescent proteins or luminescent proteins are commercially available, for example, and are thus available to a person skilled in the art. References on methods of introducing luminescent proteins include Takai et al., PNAS, 112(14), 4352-4356 (2015); and Suzuki et al., Nature Communications 7:13718 DOI:10.1038. (2016), which are incorporated herein by reference in its entirety. For visualization or imaging techniques for the detection of labels such as fluorescent proteins, luminescent proteins, etc., sufficient guidance can be obtained from the examples described hereinbelow, the references cited above, or manufacturers' instructions, etc., in the case of those commercially available.
(25) According to the purposes of the present invention, cells that can be used to produce a modified collagen protein include any animal cells. Examples of such cells include, but are not limited to, mouse MC3T3-E1 cells (originally collagen-producing cells), or mouse Balb3T3 cells used in the examples described below. Examples of an “animal” of the animal cells include, but are not limited to, mouse, rat, guinea pig, gerbil, hamster, ferret, rabbit, dog, minipig and the like.
(26) The term “identity” is used herein to distinguish it from “homology”. For example, when referring to homology between amino acid sequences, amino acids with the same properties (e.g., glutamic acid and aspartic acid) are categorized as a single group, but they are distinguished when considering identity. That is, identity refers to consistency. The identity of amino acid and nucleotide sequences can be determined using an algorithmic BLAST (Proc. Natl. Acad by Karlin and Altull. Sci. USA, 87, 2264-2268, 1990; Proc. Natl. Acad. Sci. USA, 90, 5873, 1993). Programs called BLASTN and BLASTX based on BLAST algorithms have been developed (Altschul S F, et al: J Mol Biol 215: 403, 1990). When the base sequence is analyzed using BLASTN, the parameters are, for example, score=100 and wordlength=12. When the amino acid sequence is analyzed using BLASTX, the parameters are, for example, score=50 and wordlength=3. When using BLAST and Gapped BLAST programs, the default parameters of the respective programs can be used.
(27) In an advanced embodiment of the invention, cells transformed to express the modified collagen protein are stressed to promote the secretion of the modified collagen protein out of the cells. “Stress” conditions imparted to cells transgenic to express modified collagen proteins according to the purposes of the present invention include, but are not limited to, filling up a container with culture medium, changing gravity, vibration, centrifugal force, etc., provided that they have the effect of changing the morphology of the cells.
BRIEF DESCRIPTION OF THE SEQUENCES
(28) SEQ ID NO: 1 shows the nucleotide sequence encoding GFP-inserted Type V collagen α1 shown schematically in
(29) SEQ ID NO: 2 shows the amino acid sequence of GFP-inserted Type V collagen α1 shown schematically in
(30) SEQ ID NO: 3 shows the nucleotide sequence encoding HaloTag7-inserted Type V collagen α1 shown schematically in
(31) SEQ ID NO: 4 shows the amino acid sequence of HaloTag7-inserted Type V collagen α1 shown schematically in
(32) SEQ ID NO: 5 shows the nucleotide sequence of the plasmid vector pEB6CAGcol5α1-EGFP according to the working example of the present invention.
(33) SEQ ID NO: 6 shows the nucleotide sequence of the plasmid vector pEB6CAGcol5α1-Halo7 according to the working example of the present invention.
(34) SEQ ID NO: 7 shows the nucleotide sequence of the linker used in making the modified collagen protein according to the examples of the present invention (see
(35) SEQ ID NO: 8 shows the amino acid sequence encoded by the nucleotide sequence of SEQ ID NO: 7.
(36) SEQ ID NO: 9 shows the nucleotide sequence (XM_006497644) that encodes mouse-derived Type V collagen α1.
(37) SEQ ID NO: 10 shows the amino acid sequence (XP_006497707) of mouse-derived Type V collagen α1.
(38) SEQ ID NO: 11 shows the nucleotide sequence (XM_017313471) that encodes mouse-derived Type V collagen α3.
(39) SEQ ID NO: 12 shows the amino acid sequence (XP_017168960) of mouse-derived Type V collagen α3.
(40) SEQ ID NO: 13 shows the nucleotide sequence (NM_007729) encoding mouse-derived Type XI collagen α1.
(41) SEQ ID NO: 14 shows the amino acid sequence (NP_031755) of mouse-derived Type XI collagen α1.
(42) SEQ ID NO: 15 shows the nucleotide sequence (NM_001317722) that encodes mouse-derived Type XI collagen α2.
(43) SEQ ID NO: 16 shows the amino acid sequence (NP_001304651) of mouse-derived Type XI collagen α2.
(44) SEQ ID NO: 17 shows the nucleotide sequence (U55762) of the cloning vector pEGFP-N1 used in making the modified collagen protein according to the working example of the present invention (see
(45) SEQ ID NO: 18 shows the amino acid sequence (AAB02574) of the enhanced green fluorescent protein encoded by the cloning vector pEGFP-N1 of SEQ ID NO: 17.
(46) SEQ ID NO: 19 shows the nucleotide sequence (EU621375) of CMV Flexi Vector pFN21K (HaloTag 7) used in making the modified collagen protein according to the working example of the present invention (see
(47) SEQ ID NO: 20 shows the amino acid sequence (ACF22985) of the kanamycin-resistant protein encoded by CMV Flexi Vector pFN21K (HaloTag 7) of SEQ ID NO: 19.
(48) The following examples illustrate the present invention, but the scope of the present invention is not intended to be limit to these examples.
EXAMPLES
(49) Materials and Methods
(50) The materials and methods used in the examples below are as follows.
(51) 1. Cultivation of Cells
(52) The cells used are a mouse-derived osteoblast cell line, MC3T3-E1, and a mouse fibroblast cell Balb3T3.
(53) Normal cultivation was performed using the following materials. Cultivations using MC3T3-E1 and Balb3T3, respectively, were performed in αMEM medium containing 10% serum, and in MEM medium containing 10% serum, at 37° C. and 5% CO.sub.2. Serum: Fetal bovine serum (Gibco) Medium: Minimum Essential Medium Alpha (Gibco) Medium: Minimum Essential Medium (Gibco) Dish for culturing cells: Cell culture dish 60×15 mm (Falcon)
(54) The following flasks were filled with medium for shaking culture. Cell-culture flasks: 25 mL (Falcon) of Cell culture flask (12.5 cm.sup.2 slant neck/plug seal)
(55) The shaking culture was performed using a mini-shaker SHM-2002 (LMS) at a shaking angle of 7° and a rotational speed of 20 rpm using a sunflower shaking method.
(56) 2. Gene Transfer
(57) For vector construction, the pEB6CAG vector developed in this laboratory was used as a basic skeleton. Each of GFP and HaloTag®7 (Promega) was inserted between the N-terminal globular domain and the hinge region of cloned Type V collagen, and the following vectors were generated (see
(58) MC3T3-E1 cell, a cell line derived from a mouse skull, and mouse fibroblast cell line Balb3T3 were used in this study. Gene transfer was carried out by the lipofection method, and ScreenFect™ A (Wako Junyaku, Inc.) was used as a reagent. Thirty-six hours after the gene transfer, cells were treated with 0.05% Trypsin, 0.02% EDTA-2Na in PBS(−) solution (Trypsin solution), then passaged in a 60-mm dish, and selected for 5 days with αMEM medium or MEM medium containing a final concentration of 1.5 μg/ml Geneticin (G418). Formed colonies were collected, and after continuing the culturing, clones with high luminescence intensity were selected.
(59) 3. Stain with HaloTag Ligands
(60) The following three dyes were added to 0.1 μM to MC3T3-E1 cells to which the pEB6CAGCol5α1-Halo7 had been introduced, stained for 1 hour, washed with medium to remove the dyes, and after 1 hour of decolorization, the cells were observed for fluorescent light. HaloTag-OregonGreen (membrane permeable, green) HaloTag-TMR (membrane permeable, red) HaloTag-Alexa488 (membrane impermeable, green)
(61) 4. Imaging of Cells
(62) OLYMPUS LX73 was used for fluorescent microscopy. The following filter sets were used for fluorescence imaging. Green Fluorescence: U-EGFP (OLYMPUS), Ex: 470/20, Em: 518/45 Red fluorescence: BrightLine®SpGold-B-000-ZERO (Semrock), Ex: 534/20, Em: 572/28 Near Infrared Fluorescence: BrightLine®Cy5.5-B-000 (Semrock), Ex: 655/40, Em: 716/40
(63) Super-resolution microscopy was performed using a Zeiss LSM880 Airscan with cells in which nuclei were counterstained with Hoechst33342.
(64) 5. Cell Transplantation
(65) As for collagen-probe-stable expression strains of MC3T3-E1 and Balb3T3, 1×10.sup.6 cells of were suspended in 50 μl of PBS(−). MC3T3-E1 cells were implanted subcutaneously in the back of C57BL/6 albino mouse, and Balb3T3 cells were implanted subcutaneously in the back of Balb/c mouse. Two weeks later, the skin was dissected and photographed using a multi-spectral CCD-camera Nuance (PerkinElmer placed on a stereomicroscope MVX (OLYMPUS) at 2.5× magnification. In the case of GFP insertion, the cells were observed as they were, and in the case of HaloTag insertion, 50 μl of a solution obtained by diluting Stella700HaloTag ligands with PBS(−) to 0.5 μM was administered to the cell transplantation site, and the cells were stained for 1 hour and then photographed. The following filters were used for fluorescence imaging. Green Fluorescence: U-FGFP (OLYMPUS), Ex: 470/20, Em: 518/45 Near-Infrared Fluorescence: BrightLine®Cy5.5-B-000 (Semrock), Ex: 655/40, Em: 716/40
(66) Three weeks after the transplantation, a skin section containing fluorescence was excised and fixed, and sections were made in the direction of cutting the fluorescence fibers, and the accumulation of collagen fibers was detected by H&E staining, Masson trichrome staining, and Elastica-One Gieson staining
Example 1
(67) Expression of GFP-Inserted Type V Collagen-α1 in Murine MC3T3-E1 Cells
(68) Considering that a special intracellular transport system is considered to be required for collagen, GFP-inserted Type V collagen α1 was introduced and expressed using murine MC3T3-E1 cells which had been reported to produce collagen. Fluorescence microscopy revealed granular green fluorescence in the cytoplasm, probably transported by membrane vesicles, but the Golgi bodies were dark missing (
Example 2
(69) Expression of GFP-Inserted Type V Collagen α1 in Murine MC3T3-E1 Cells Under Stress (1)
(70) To examine an improvement of the cultivation method, the morphology of MC3T3-E1 cells was observed while the flasks were rotated and subjected to the stress of gravitational change using Zeromo® manufactured by Kitagawa Corporation. As shown in
Example 3
(71) Expression of GFP-Inserted Type V Collagen α1 in Murine MC3T3-E1 Cells Under Stress (2)
(72) When MC3T3-E1 cells into which the GFP-inserted Type V collagen α1 was introduced and expressed were subjected to gravitational stress by Zeromo® as in
Example 4
(73) Comparison and Study of Stress Conditions
(74) Whether the rotation using the Zeromo® is necessary or a simpler shaking is sufficient for the gravitational stress was investigated. A) When MC3T3-E1 cells into which GFP-inserted Type V collagen al had been introduced and expressed were subjected to static culture in a normal manner, the cells were epithelial and not secreted (
Example 5
(75) Extracellular Secretion of Collagen Fibers
(76) To confirm that the fibers seen in
Example 6
(77) Expression of GFP-Inserted Type V Collagen-α1 in Murine Balb3T3 Cells Under Stress
(78) To assess whether the GFP-inserted V collagen al probes also function in other cells, a Balb3T3 cell line in which GFP-inserted Type V collagen al was introduced and expressed was established and analyzed. During normal growth culture, granular fluorescence was only detected in the cytoplasm and secretion did not occur (
Example 7
(79) Murine Subcutaneous Implantation of GFP-Inserted Type V Collagen-α1-Expressing Cells
(80) 1×10.sup.6 cells of collagen-probe-stable expression strains of MC3T3-E1 and Balb3T3 were suspended in 50 μl of PBS(−), and MC3T3-E1 cells were implanted subcutaneously in the back of C57BL/6 albino mouse and Balb3T3 cells were implanted subcutaneously in the back of Balb/c mouse. Two weeks later, the skin was turned inside-out and fluorography revealed the formation of collagen fiber-like clumps in all mice that were illuminated by GFP fluorescence. These were not seen at the site where only PBS(−) was injected (
Example 8
(81) Histological Analysis of Murine Skin Transplanted with GFP-Inserted Type V Collagen-α1-Expressing MC3T3-E1 Cells
(82) When GFP-inserted Type V collagen α1 expressing MC3T3-E1 cells were observed at the same position as in Example 7 at 3 weeks after subcutaneous transplantation, fibrous luminescence clumps continued to exist. The skin was harvested to contain the clumps, and after fixation, sections were made across the luminescence fibers. Hematoxylin-Eosin (HE) staining, Masson's Trichrome (MT) staining, and Elastica van Guison (EVG) staining were performed. Unusual aneurysm-like structures were observed on the backside of the fluoresced skin (arrowheads in
Example 9
(83) Murine Subcutaneous Implantation of Halotag-Inserted Type V Collagen-α1 Expressing MC3T3-E1 Cells
(84) 1×10.sup.6 cells of a stable expression strain of Halotag-inserted Type V collagen-α1 expressing MC3T3-E1 were suspended in 50 μl of PBS(−) and implanted subcutaneously in the back of C57BL/6 albino mouse. Two weeks later, 50 μl of Stella700HaloTag ligands diluted in PBS(−) at 0.5 μM was administered to the cell-transplantation site, and after 1 hour of staining, the skin was turned inside-out and luminescence photographed, and a clump of collagen fibers was formed, which was illuminated by Stella700 near-infrared fluorescence (
Example 10
(85) Superresolution Microscopic Analysis of GFP-Inserted Type V Collagen-α1-Expressing MC3T3-E1 Cells
(86) A GFP-inserted Type V collagen α1-expressing MC3T3-E1 was cultured on a glass-bottom dish, and 19 days after switching to a stress culture capable of inducing collagen secretion, green fluorescent fibrous structures were observed outside the cells (
Example 11
(87) Fibrogenesis Inhibitory Experiments of GFP-Inserted Type V Collagen-α1 Expressing MC3T3-E1 Cells
(88) The GFP-inserted Type V collagen α1 expression MC3T3-E1 was cultured in multi-well plates and when switched to stress cultures capable of inducing collagen secretion, 1.0 mg/ml of Pirfenidone was added and compared to wells without such addition of Pirfenidone. After 28 days, green fluorescent fiber structures were observed extracellularly in the wells without Pirfenidone, whereas fiber formation was inhibited in the wells with Pirfenidone (
INDUSTRIAL APPLICABILITY
(89) Since the present invention directly visualizes collagen fibers, the present invention is useful as a probe for monitoring fiber formation in real-time, and is also useful as a screening technique for a fiber-formation suppressing drug using the probe.
(90) The present invention is also useful as a research tool for studying fibrosis.
(91) The modified collagen protein of the present invention, or collagen fibers containing thereof, may also be useful as a delivery vehicle to the target site of the useful protein, since it may also enable the carrying of the therapeutic protein to the collagen fibers and delivery to the treatment site.
(92) The present invention is useful for providing model animals of various diseases and the like capable of monitoring fibrosis symptoms in a non-invasive and real-time manner (e.g., experimental animals with a certain degree of genetic tradition and uniform genetic requirements, such as mice, rats, guinea pigs, gerbils, hamsters, ferrets, rabbits, dogs, minipigs, etc.).
(93) The present invention is also useful in providing a cell culture dish, either before or after culturing under stress, which is precoated with a cell culture medium containing an expression cell line into which a polynucleotide encoding a modified collagen protein expressed in a transformed cell and capable of forming collagen fibers outside said cell has been introduced.