RNA-CODED ANTIBODY
20190284260 · 2019-09-19
Assignee
Inventors
Cpc classification
A61K39/395
HUMAN NECESSITIES
C07K16/2863
CHEMISTRY; METALLURGY
A61P31/00
HUMAN NECESSITIES
C07K2317/51
CHEMISTRY; METALLURGY
A61K48/00
HUMAN NECESSITIES
A61K48/005
HUMAN NECESSITIES
A61K48/0075
HUMAN NECESSITIES
C07K2317/92
CHEMISTRY; METALLURGY
A61P35/00
HUMAN NECESSITIES
Y02A50/30
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
C07K2317/94
CHEMISTRY; METALLURGY
C07K2317/24
CHEMISTRY; METALLURGY
A61K9/0019
HUMAN NECESSITIES
C07K16/1027
CHEMISTRY; METALLURGY
C07K2317/76
CHEMISTRY; METALLURGY
A61K48/0066
HUMAN NECESSITIES
International classification
A61K9/00
HUMAN NECESSITIES
A61K39/395
HUMAN NECESSITIES
C07K16/28
CHEMISTRY; METALLURGY
A61K48/00
HUMAN NECESSITIES
Abstract
The present application describes an antibody-coding, non-modified or modified RNA and the use thereof for expression of this antibody, for the preparation of a pharmaceutical composition, in particular a passive vaccine, for treatment of tumours and cancer diseases, cardiovascular diseases, infectious diseases, autoimmune diseases, virus diseases and monogenetic diseases, e.g. also in gene therapy. The present invention furthermore describes an in vitro transcription method, in vitro methods for expression of this antibody using the RNA according to the invention and an in vivo method.
Claims
1. A method of expressing an antibody in a subject comprising administering an effective amount of a pharmaceutical composition comprising purified mRNA encoding (i) a first polypeptide comprising the variable domain heavy chain (VH) of the antibody; and (ii) a second polypeptide comprising the variable domain light chain (VL) of the antibody, wherein the mRNA of the pharmaceutical composition comprises at least one 1-methyl-pseudouridine nucleotide substitution.
2. The method of claim 1, wherein the subject has cancer or an infection.
3. The method of claim 1, wherein the pharmaceutical composition is administered by injection.
4. The method of claim 1, wherein the mRNA comprises a 5 cap structure.
5. The method of claim 1, wherein the antibody comprises a human antibody or a humanized antibody.
6. The method of claim 1, wherein the mRNA comprises a sequence encoding an antibody operably linked to a secretory signal sequence.
7. The method of claim 1, wherein the composition comprises a mRNA that encodes an antibody light chain and a mRNA that encodes an antibody heavy chain.
8. The method of claim 1, wherein the composition comprises a mRNA that encodes an antibody light chain and an antibody heavy chain, wherein the antibody light chain and an antibody heavy chain coding sequences are linked by an internal ribosomal entry site (IRES).
9. The method of claim 1, wherein the mRNA comprises a poly-A tail of 10 to 200 adenosine nucleotides.
10. The method of claim 1, wherein the mRNA comprises a poly-C tail of 10 to 200 cytosine nucleotides.
11. The method of claim 1, wherein the mRNA comprises a poly-A tail of 10 to 200 adenosine nucleotides and a 5 cap structure.
12. The method of claim 1, wherein the mRNA is further modified by introduction of a non-native nucleotide compared with a native mRNA sequence and/or by covalent coupling of the mRNA with a further chemical moiety.
13. The method of claim 12, wherein the mRNA comprises a G/C content in the anti-body coding region which is greater than the G/C content of the coding region of the native mRNA sequence encoding the antibody.
14. The method of claim 12, wherein the mRNA comprises an antibody coding sequence that is modified, compared with the native mRNA encoding the antibody, such that at least one codon of the native mRNA which codes for a tRNA which is relatively rare in the cell is exchanged for a codon which codes for a tRNA which is relatively frequent in the cell.
15. The method of claim 12, wherein the mRNA further comprises a chemical modification relative to a naturally occurring mRNA.
16. The method of claim 12, wherein the mRNA further comprises at least a nucleotide that is substituted with a nucleotide analog selected from the group consisting of: 1-methyl-adenine, 2-methyl-adenine, 2-methylthio-N-6-isopentenyl-adenine, N6-methyl-adenine, N6-isopentenyl-adenine, 2-thio-cytosine, 3-methylcytosine, 4-acetyl-cytosine, 5-methyl-cytosine, 2,6-diaminopurine, 1-methyl-guanine, 2-methyl-guanine, 2,2-dimethyl-guanine, 7-methyl-guanine, inosine, 1-methyl-inosine, dihydro-uracil, 2-thio-uracil, 4-thio-uracil, 5-carboxymethylaminomethyl-2-thio-uracil, 5-(carboxyhydroxymethyl)-uracil, 5-fluoro-uracil, 5-bromo-uracil, 5-carboxymethylaminomethyl-uracil, 5-methyl-2-thio-uracil, 5-methyl-uracil, N-uracil-5-oxyacetic acid methyl ester, 5-methylaminomethyl-uracil, 5-methoxyaminomethyl-2-thio-uracil, 5-methoxycarbonylmethyl-uracil, uracil-5-oxyacetic acid methyl ester, uracil-5-oxyacetic acid (v), pseudouracil, queosine, -D-mannosyl-queosine, wybutoxosine, phosphoramidates, phosphorothioates, peptide nucleotides, methylphosphonates, 7-deazaguanosine, 5-methylcytosine and inosine.
17. The method of claim 12, wherein the mRNA modification further comprises at least one base-modified nucleotide chosen from the group consisting of 2-amino-6-chloropurine riboside 5-triphosphate, 2-aminoadenosine 5-triphosphate, 2-thiocytidine 5-triphosphate, 2-thiouridine 5-triphosphate, 4-thiouridine 5-triphosphate, 5-aminoallylcytidine 5-triphosphate, 5-aminoallyluridine 5-triphosphate, 5-bromocytidine 5-triphosphate, 5-bromouridine 5-triphosphate, 5-iodocytidine 5-triphosphate, 5-iodouridine 5-triphosphate, 5-methylcytidine 5-triphosphate, 5-methyluridine 5triphosphate, 6-azacytidine 5-triphosphate, 6-azauridine 5-triphosphate, 6-chloropurine riboside 5-triphosphate, 7-deazaadenosine 5-triphosphate, 7-deazaguanosine 5-triphosphate, 8-azaadenosine 5-triphosphate, 8-azidoadenosine 5-triphosphate, benzimidazole riboside 5-triphosphate, N1-methyladenosine 5-triphosphate, N1-methylguanosine 5-triphosphate, N6-methyladenosine 5-triphosphate, O6-methylguanosine 5 -triphosphate, pseudouridine 5-triphosphate, puromycin 5-triphosphate and xanthosine 5-triphosphate.
18. The method of claim 1, wherein the mRNA has been purified by reverse phase chromatography.
19. The method of claim 20, wherein the chromatography is over a porous stationary phase comprising non-alkylated polystyrene-divinylbenzene.
20. A pharmaceutical composition comprising purified mRNA encoding (i) a first polypeptide comprising the variable domain heavy chain (VH) of the antibody; and (ii) a second polypeptide comprising the variable domain light chain (VL) of the antibody, wherein the mRNA of the pharmaceutical composition comprises at least one 1-methyl-pseudouridine nucleotide substitution.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0213] The following figures and examples are intended to explain in more detail and illustrate the above description, without being limited thereto.
[0214]
[0215]
[0216] (A): Gene cluster for the light chain .
[0217] (B): Gene cluster for the light chain .
[0218] (C): and (D): Gene cluster for the heavy chain.
[0219] In this context, the variable region of a heavy chain is composed of three different gene segments. In addition to the V and J segments, additional D segments are also found here. The V.sub.H, D.sub.H and J.sub.H segments can likewise be combined with one another virtually as desired to form the variable region of the heavy chain.
[0220]
[0221]
[0222]
[0223] (A) shows a diagram of an IgG antibody of two light and two heavy chains.
[0224] (B) shows an Fab fragments from the variable and a constant domain in each case of a light and a heavy chain. The two chains are bonded to one another via a disulfide bridge.
[0225] (C) shows an scFv fragment from the variable domain of the light and the heavy chain, which are bonded to one another via an artificial polypeptide linker.
[0226]
[0227] V.sub.H=variable domain of the heavy chain;
[0228] C.sub.H=constant domain of the heavy chain;
[0229] V.sub.L=variable domain of the light chain;
[0230] C.sub.L=constant domain of the light chain;
[0231] SIRES=internal ribosomal entry site (IRES, superIRES)
[0232] muag=mutated form of the 3 UTR of the alpha-globin gene; and
[0233] A70C30=polyA-polyC tail.
[0234]
[0235]
[0236]
[0237]
[0238]
[0239]
TABLE-US-00012 linkerforanoptimumKozaksequence AAGCTTHindIII
stopcodon
SpeI
BglII
NsiI (SEQIDNO:60) CATCATCATCATCATCATHistag
[0240] Signal Peptide, HLA-A*0201: GC-Rich
TABLE-US-00013 (SEQIDNO:61) ATGGCCGTGATGGCGCCGCG- GACCCTGGTCCTCCTGCTGAGCGGCGCCCTCGCCCTGACGCAGAC- CTGGGCCGGG.
[0241] The coding region of the heavy chain sequence starts with the signal peptide as given above (italic). This region is G/C enriched as well. The subsequent sequence starting with CAG represents the actual antibody coding sequence (see ) The coding region for the light chain sequence starts 3 upstream with the signal peptide's ATG as given above followed by the light chain's coding region for the light chain starting with CAG running to the stop codon TGA (
)(see
) The inventive RNA coded by the construct given in
[0242]
[0243]
[0244]
[0245]
[0246]
TABLE-US-00014 linkerforanoptimumKozaksequence AAGCTTHindIII
stopcodon
SpeI
BglII
NsiI (SEQIDNO:60) CATCATCATCATCATCATHistag
[0247] Signal Peptide, HLA-A*0201: GC-Rich
TABLE-US-00015 (SEQIDNO:61) ATGGCCGTGATGGCGCCGCG- GACCCTGGTCCTCCTGCTGAGCGGCGCCCTCGCCCTGACGCAGAC- CTGGGCCGGG.
[0248] The coding region of the heavy chain sequence starts with the signal peptide as given above (italic). This region is G/C enriched as well. The subsequent sequence starting with CAG represents the actual antibody coding sequence (see ) The coding region for the light chain sequence starts 3 upstream with the signal peptide's ATG as given above followed by the light chain's coding region for the light chain starting with GAC running to the stop codon TGA (
)(see
) The inventive RNA coded by the construct given in
[0249]
[0250]
[0251]
[0252]
[0253]
TABLE-US-00016 linkerforanoptimumKozaksequence AAGCTTHindIII
stopcodon
SpeI
BglII
NsiI (SEQIDNO:60) CATCATCATCATCATCATHistag
[0254] Signal Peptide, HLA-A*0201: GC-Rich
TABLE-US-00017 (SEQIDNO:61) ATGGCCGTGATGGCGCCGCG- GACCCTGGTCCTCCTGCTGAGCGGCGCCCTCGCCCTGACGCAGAC- CTGGGCCGGG.
[0255] The coding region of the heavy chain sequence starts with the signal peptide as given above (italic). This region is G/C enriched as well. The subsequent sequence starting with GAG represents the actual antibody coding sequence (see ) The coding region for the light chain sequence starts 3 upstream with the signal peptide's ATG as given above followed by the light chain's coding region for the light chain starting with GAC running to the stop codon TGA (
)(see
) The inventive RNA coded by the construct given in
[0256]
[0257]
[0258]
[0259]
[0260]
[0261] The following examples explain the present invention in more detail, without limiting it.
EXAMPLES
1. Example
1.1 Cell Lines and Cell Culture Conditions Used:
[0262] The cell lines HeLa (human cervix carcinoma cell line; Her2-positive), HEK293 (human embryonal kidney; Her2-negative) and BHK21 (Syrian hamster kidney; Her2-negative) were obtained from the DMSZ (Deutsche Sammlung von Mikroorganismen and Zellkulturen GmbH) in Braunschweig and cultured in RPMI medium enriched with 2 mM L-glutamine (Bio Whittaker) and 10 g/ml streptomycin and 10 U/ml of penicillin at 37 C. under 5% CO2.
1.2 Preparation of expression vectors for modified RNA sequences according to the invention:
[0263] For the production of modified RNA sequences according to the invention, the GC-enriched and translation-optimized DNA sequences which code for a heavy chain and a light chain of an antibody (e.g. cetuximab (Erbitux), trastuzumab (Herceptin) and rituximab (Rituxan), cf. SEQ ID NO: 1-15, where SEQ ID NO: 1, 3, 6, 8, 11 and 13 represent the particular coding sequences which are not GC-optimized of the heavy and the light chains of these antibodies and SEQ ID NO: 2, 4, 5, 7, 9, 10, 12, 14 and 15 represent the coding GC-enriched sequences (see above)) were cloned into the pCV19 vector (CureVac GmbH) by standard molecular biology methods. To ensure equimolar expression of the two chains, an IRES (internal ribosomal entry site) was introduced. The mutated 3 UTR (untranslated region) of the alpha-globin gene and a polyA-polyC tail at the 3 end serve for additional stabilizing of the mRNA. The signal peptide of the HLA-A*0201 gene is coded for secretion of the antibody expressed. A His tag was additionally introduced for detection of the antibody.
1.3 Preparation of the G/C-Enriched and Translation-Optimized Antibody-Coding mRNA An in vitro transcription was carried out by means of T7 polymerase (T7-Opti mRNA Kit, CureVac, Tubingen, Germany), followed by purification with Pure Messenger (CureVac, Tubingen, Germany). For this, a DNase digestion was first carried out, followed by an LiCl precipitation and thereafter an HPLC using a porous reverse phase as the stationary phase (PURE Messenger).
1.4 Detection of RNA-Antibody by Means of Flow Cytometry:
[0264] 1 million cells were transfected with the mRNA according to one of SEQ ID NO: 5, 10 or 15 (see above), which codes for an antibody as described above, by means of electroporation and were then cultured in the medium for 16 h. The antibody expressed was detected by means of an FITC-coupled His tag antibody. Alternatively, the secreted antibody from the supernatant of transfected cells was added to non-transfected, antigen-expressing cells and, after incubation, detected by the same method.
1.5 In Vitro Detection of an Antibody Coded by an RNA According to the Invention by Means of ELISA:
[0265] A microtitre plate was loaded with a murine antibody (1) against a first antigen (HER-2). Cell lysate of antigen-expressing cells was then added to the plate. The antigen was bound here by the murine antigen-specific antibody (1). The supernatant of cells which were transfected with a modified mRNA according to the invention which codes for an HER-2-specific antibody was then added to the microtitre plate. The HER-2-specific antibody (2) contained in the supernatant likewise binds to the antibody-bound antigen, the two antibodies recognizing different domains of the antigen. For detection of the bound antibody (2), anti-human IgG coupled to horseradish peroxidase (3-HRP) was added, the substrate TMB being converted and the result determined photometrically.
1.6 In Vivo Detection of an Antibody Coded by an RNA According to the Invention:
[0266] An antibody-coding (m)RNA according to the invention as described above was injected intradermally or intramuscularly into BALB/c mice. 24 h thereafter, the corresponding tissues were removed and protein extracts were prepared. The expression of the antibody was detected by means of ELISA as described here.
1.7 Detection of an Antibody Coded by an RNA According to the Invention by Means of Western Blotting:
[0267] The expressed antibodies from the supernatant of cells which were transfected with a modified mRNA which codes for an antibody as described above were separated by means of a polyacrylamide gel electrophoresis and then transferred to a membrane. After incubation with anti-His tag antibody and a second antibody coupled to horseradish peroxidase, the antibody expressed was detected by means of chemoluminescence.
1.8 Tumour Model:
[0268] SKOV-3 cells were injected subcutaneously into BALB/c mice. Within the following 28 days, eight portions of 10 g of a modified mRNA which codes for an antibody as described above were injected into the tail vein of the mice. The tumour growth was monitored over a period of 5 weeks.
2. Example
2.1. Cell Lines
[0269] RNA-based expression of humanised antibodies was done in either CHO-K1 or BHK-21 cells. The tumour cell lines BT-474, A-431 and Raji strongly expressing HER2, EGFR and CD20, respectively, were used to record antibody levels. All cell lines except CHO were maintained in RPMI supplemented with FCS and glutamine according to the supplier's information. CHO cells were grown in Ham's F12 supplemented with 10% FCS. All cell lines were obtained from the German collection of cell cultures (DSMZ).
2.2. Antibody Expression
[0270] Various amounts of antibody-RNA (G/C enriched as defined by
2.3. Western Blot Analysis
[0271] In order to detect translation of transfected RNA, proteins from either cell culture supernatants or cell lysates were separated by a 12% SDS-PAGE and blotted onto a nitrocellulose membrane. Humanised antibodies Herceptin (Roche), Erbitux (Merck KGAA), and Mabthera=Rituxan (Roche) were used as controls. After blotting was completed, membranes were consecutively incubated with biotinylated goat anti-human IgG (Dianova), streptavidin coupled to horseradish peroxidase (BD), and a chemiluminescent substrate (SuperSignal West Pico, Pierce). Staining was detected with a Fuji LAS-1000 chemiluminescence camera.
2.4. FACS Analysis
[0272] 200.000 target cells expressing the respective antigen were incubated with either control antibodies (Herceptin, Erbitux, Mabthera) or cell culture supernatants. For detection of bound antibodies, cells were stained with biotinylated goat anti-human IgG (Dianova) and PE-labelled streptavidin (Invitrogen). Cells were analysed on a FACSCalibur (BD).