Device for separation and collection of plasma
10335078 ยท 2019-07-02
Assignee
Inventors
- Erik Leeming Kvam (Niskayuna, NY)
- Weston Blaine Griffin (Niskayuna, NY, US)
- Erin Jean Finehout (Broomfield, CO, US)
- Ying Mao (Niskayuna, NY, US)
Cpc classification
A61B5/151
HUMAN NECESSITIES
A61B5/150755
HUMAN NECESSITIES
A61B5/15105
HUMAN NECESSITIES
A61B5/15142
HUMAN NECESSITIES
A61B5/150343
HUMAN NECESSITIES
A61B5/150068
HUMAN NECESSITIES
International classification
C12Q1/6806
CHEMISTRY; METALLURGY
Abstract
A method for separating and collecting cell-free plasma by finger stick that minimizes contamination with genomic DNA from a donor. The method comprising placing a tourniquet on one of the digits of the donor's finger to apply pressure, lancing the digit to create an incision in the digit, and collecting blood from the incision from the incision site. The collected blood is placed on a separation membrane wherein the separation membrane is in contact with a collection membrane and both the separation and collection membrane are inserted into a substrate configured to provide overlap between the membranes. A kit and instructions for carrying out the method is also provided.
Claims
1. A method of separating and collecting a cell-free plasma sample that minimizes contamination with genomic DNA (Deoxyribonucleic Acid) from a donor, the method comprising: placing a tourniquet on a digit of the donor's hand to apply pressure; lancing the digit to create an incision in the digit; collecting blood from the incision; dispersing the collected blood onto a separation membrane wherein the separation membrane is in contact with a collection membrane and said separation and collection membranes only overlap at a portion of the collection membrane defined as an overlapping contact area for both said membranes, wherein both the separation membrane and the collection membrane are inserted into a substrate configured to provide overlap between said membranes at the defined overlapping contact area; and collecting the cell-free plasma sample on the defined overlapping contact area, wherein the collected cell-free plasma sample contains cell-free DNA and is substantially free of genomic DNA, and wherein the substrate further comprises: an inner flexure defined by a plurality of first slots in the substrate, disposed proximate to a first peripheral portion of the substrate; an outer flexure defined by a plurality of second slots in the substrate, disposed surrounding at least a portion of the plurality of first slots; wherein the inner flexure comprises a first distal end portion and the outer flexure comprises a second distal end portion overlapping with a fraction of the first distal end portion of the inner flexure, and means for holding and aligning the separation membrane to position along the inner flexure, said means located between the first peripheral portion and a first proximal end portion of the inner flexure.
2. The method of claim 1, wherein an overlapping contact distance of the overlapping contact area in the longitudinal direction is in a range from about 1 mm to about 2 mm.
3. The method of claim 1, further comprising: positioning the separation membrane and the collection membrane on the substrate and forming the overlapping contact area between the separation membrane and the collection membrane.
4. The method of claim 3, wherein forming the overlapping contact area further comprises forming the overlapping contact area between a distal end of the separation membrane and a proximal end of the collection membrane.
5. The method of claim 3, further comprising: applying a pressure at the overlapping contact area.
6. The method of claim 3, wherein the overlapping contact area is in a range of about 8 mm.sup.2 to about 16 mm.sup.2.
7. The method of claim 1, further comprising: separating the collected blood using the separation membrane and collecting the plasma sample using the collection membrane, wherein both separating and collecting are by a capillary flow.
8. The method of claim 1, where the tourniquet is an elastic material or a rubber band.
9. The method of claim 1, further comprising removing a first blood immediately after lancing while still applying pressure.
10. The method of claim 1, wherein the collecting step further comprises holding a capillary tube against the blood formed from the incision to collect the blood.
11. The method of claim 1, wherein the collecting step is carried out without milking the finger.
12. The method of claim 1, wherein the dispersing step further comprises applying pressure by an external force on the separation membrane and the collection membrane about the defined overlapping contact area.
Description
DRAWINGS
(1) These and other features and aspects of embodiments of the present invention will become better understood when the following detailed description is read with reference to the accompanying drawings in which like characters represent like parts throughout the drawings, wherein:
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DETAILED DESCRIPTION
(10) The singular forms a an and the include plural referents unless the context clearly dictates otherwise. Approximating language, as used herein throughout the specification and claims, may be applied to modify any quantitative representation that could permissibly vary without resulting in a change in the basic function to which it is related. Accordingly, a value modified by a term such as about is not to be limited to the precise value specified. Unless otherwise indicated, all numbers expressing quantities of ingredients, properties such as molecular weight, reaction conditions, so forth used in the specification and claims are to be understood as being modified in all instances by the term about. Accordingly, unless indicated to the contrary, the numerical parameters set forth in the following specification and attached claims are approximations that may vary depending upon the desired properties sought to be obtained by the present invention. At the very least each numerical parameter should at least be construed in light of the number of reported significant digits and by applying ordinary rounding techniques.
(11) Embodiments discussed herein disclose a new device for facilitating plasma separation and collection from blood samples. In certain embodiments, the device includes one piece substrate having an outer flexure and an inner flexure, a separation membrane, and a collection membrane. The inner flexure is formed from a plurality of first slots and the outer flexure is formed from a plurality of second slots. The inner flexure is configured to align a distal end of the separation membrane under a distal end portion of the outer flexure. The outer and inner flexures are further configured to align a proximal end of the collection membrane under the distal end portion of the outer flexure and a distal end portion of the inner flexure such that the proximal end of the collection membrane has a defined overlapping contact area with the distal end of the separation membrane. The overlapping contact area between the two membranes within the substrate facilitates proper separation and collection of plasma from the blood samples.
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(13) The substrate 100 is a base member configured to receive, hold, support, and align at least two membranes used in separation and collection of plasma from blood samples. In one embodiment, the substrate 100 has a square shape with curved edges and includes a first peripheral portion 112 and a second peripheral portion 114 disposed opposite to the first peripheral portion 112. The substrate 100 has a polymer material such as polypropylene, nylon (polyamide), high density polyethylene (HDPE), and polyetheretherketone (PEEK). In one embodiment, the substrate 100 may be manufactured using an injection molding technique and has a uniform thickness T.sub.1 (as shown in
(14) In one embodiment, the inner flexure 102 is located proximate to the first peripheral portion 112 and formed from a plurality of first slots 116 in the substrate 100. Specifically, the inner flexure 102 is defined by a portion of the substrate 100 bounded by the plurality of first slots 116. The plurality of first slots 116 includes a plurality of first sub-slots 116a and a first mid-slot 116b (as shown in
(15) The inner flexure 102 has geometry of a beaker turned on its one side, and has a thickness equal to the thickness T.sub.1 of the substrate 100. The geometry of the inner flexure 102 varies based on a length L.sub.1 of the plurality of first slots 116 and a width W.sub.1 of the inner flexure 102. Similarly, the thickness of the inner flexure 102 may vary depending on the application and design criteria. The inner flexure 102 has a first stiffness S.sub.1 depending on the geometry and thickness of the inner flexure 102. The stiffness S.sub.1 may be controlled by either increasing or decreasing the width W.sub.1, length L.sub.1, and thickness of the inner flexure 102. In one exemplary embodiment, the inner flexure 102 has a relatively longer length L.sub.1, a relatively narrow width W.sub.1, and thickness T.sub.1 of the substrate 100 to obtain a substantially lesser stiffness S.sub.1 in comparison with a stiffness of the outer flexure 104. In another embodiment, the inner flexure 102 may have a relatively longer length L.sub.1, a relatively narrow width W.sub.1, and a relatively thinner thickness in comparison with the thickness T.sub.1 of the substrate 100 to obtain a substantially lesser stiffness S.sub.1 in comparison with a stiffness of the outer flexure 104.
(16) In the illustrated embodiment, the first distal end portion 120 has a first tapered portion 120a. The first tapered portion 120a is formed on a top surface 130 of the substrate 100 corresponding to the first distal end portion 120. The first tapered portion 120a is configured to allow smooth bending of membranes (not shown in
(17) In one embodiment, the outer flexure 104 is located surrounding a portion of the plurality of first slots 116 and formed from a plurality of second slots 132 in the substrate 100. Specifically, the outer flexure 104 is defined by another portion of the substrate 100 bounded between the plurality of first slots 116 and the plurality of second slots 132. The outer flexure 104 has a second proximal end portion 134 and a second distal end portion 136. In the illustrated embodiment, the outer flexure 104 has a trapezoidal geometry and has a thickness equal to the thickness T.sub.1 of the substrate 100. The geometry of the outer flexure 104 may vary based on a length L.sub.2 of the plurality of second slots 132 and a width W.sub.2 of the outer flexure 104. Similarly, the thickness of the outer flexure 104 may vary depending on the application and design criteria.
(18) The plurality of second slots 132 includes a plurality of second sub-slots 132a and a second mid-slot 132b. The plurality of second sub-slots 132a surrounds a portion of the plurality first sub-slots 116a and the second mid-slot 132b is located near the first mid-slot 116b. Further, the second mid-slot 132b is connected to a distal end 138 of each second sub-slot 132a. In the illustrated embodiment, the second mid-slot 132b extends along the transverse direction 124 and each second sub-slot 132a extends at a predetermined angle relative to the second mid-slot 132b. In one embodiment, the pre-determined angle is greater than or equal to 90 degrees. In certain other embodiments, each second sub-slot 132a may extend in the longitudinal direction 122 and in such embodiments the plurality of second sub-slots 132a may be parallel to each other.
(19) The outer flexure 104 has a second stiffness S.sub.2 depending on the geometry and thickness of the outer flexure 104. In one embodiment, the first stiffness S.sub.1 is lesser than the second stiffness S.sub.2. The stiffness S.sub.1 and S.sub.2 may change depending on the geometry and thickness of the respective flexures 102, 104. The stiffness S.sub.2 may be controlled by either increasing or decreasing the width W.sub.2, length L.sub.2, and thickness of the outer flexure 104. Specifically, the width W.sub.2 may be controlled by varying the pre-determined angle a and may be controlled by varying the length of the second mid-slot 132b. In one exemplary embodiment, the outer flexure 104 has a wider width W.sub.2, a shorter length L.sub.2, and similar thickness to obtain a substantially greater stiffness S.sub.2 in comparison with the stiffness S.sub.1 of the inner flexure 102. For example, the stiffness S.sub.1 being less than S.sub.2 may be a measure by stiffness in the flexures as determined by the degree of deflection when a load is applied to the substrate at the respective mid-slots 116b, 132b by the inner and outer flexures 102, 104.
(20) In the illustrated embodiment, the second distal end portion 136 has a second tapered portion 136a (as shown in
(21) The plurality of holding mechanism 106 is disposed on the top surface 130. Specifically, the holding mechanism 106 is located between the first peripheral portion 112 and the first proximal end portion 118. In the illustrated embodiment, the holding mechanism 106 is a clip having an arch shaped design. In certain other embodiments, the holding mechanism 106 may be hooks, clasps, adhesives, and the like. The holding mechanism 106 may be configured to hold and align a separation membrane (not shown in
(22) The plurality of guiding mechanism 108 is disposed on the top surface 130. Specifically, the guiding mechanism 108 is located surrounding a portion of the plurality of second slots 132 and proximate to the second peripheral portion 114. In the illustrated embodiment, the guiding mechanism 108 is a ridge having protrusion. In certain other embodiments, the guiding mechanism 108 may be printed lines, grooves, and the like. The guiding mechanism 108 may be configured to support and guide a collection membrane (not shown in
(23) The plurality of fixtures 110 is disposed on the bottom surface 140 so as to ensure a gap between the substrate 100 and a surface (not shown) upon which the substrate is placed. Specifically, the plurality of fixtures 110 is located at all corners of the substrate 100. In the illustrated embodiment, the fixture 110 is a circular support structure. In certain other embodiments, the fixture 110 may be wedges, blocks, and the like. The fixture 110 may be configured to support the substrate 100 over any surface.
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(28) In one embodiment, the separation membrane 152 is a membrane, configured to remove cells from the blood samples. The separation membrane 152 may include suitable materials such as cellulose, a glass fiber, a cellulose acetate, a poly vinyl pyrrolidone, a polysulfone, a polyethersulfone, a polyester or combinations of these materials. The separation membrane 152 may be designed to have a geometry compatible with the geometry of the substrate 100, specifically, the geometry of the inner flexure 102 of the substrate 100. In the illustrated embodiment, the separation membrane 152 is of rectangular shape and includes a proximal end 156 and a distal end 158. The separation membrane 152 is disposed over the inner flexure 102. The distal end 158 is disposed under the outer flexure 104 and the proximal end 156 is disposed beneath the plurality of the holding mechanism 106. The holding mechanism 106 having the arch shaped clip 106a may hold the separation membrane 152 by maintaining a wider gap between the separation membrane 152 and the substrate 100 or the inner flexure 102. Thus, the holding mechanism 106 having the arch shaped clip 106a may avoid the blood samples to spread on the device 150 or the substrate 100 or the holding mechanism 106 from the separation membrane 152 due to surface tension and/or capillary force induced typically in the gap.
(29) In one embodiment, the collection membrane 154 is a chemically treated membrane, configured to enhance stability of components e.g. plasma, in the blood samples. The collection membrane 154 may include suitable materials such as cellulose, a glass fiber, a cellulose acetate, a poly vinyl pyrrolidone, a polysulfone, a polyethersulfone, polyester, or combinations of these materials. In the illustrated embodiment, the collection membrane 154 is of rectangular shape and includes a proximal end 162 and a distal end 164. The collection membrane 154 is disposed under the outer flexure 104 and inner flexure 102. Specifically, the proximal end 162 is disposed under the second distal end portion 136, the first distal end portion 120 (as shown in
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(31) The separation membrane 152 is introduced along the inner flexure 102 via the plurality of holding mechanism 106, which is configured to hold and align the separation membrane 152 to position along the inner flexure 102. Further, the inner flexure 102 is displaced, or pressed in a first direction 160, (e.g. downward direction) such that the distal end 158 of the separation membrane 152 may be inserted beneath the second distal end portion 136 of the outer flexure 104 via the first mid-slot 116b of the inner flexure 102.
(32) The collection membrane 154 is placed along the plurality of guiding mechanism 108, which is configured to support the collection membrane 154 to position towards the outer flexure 104. Further, the outer flexure 104 and inner flexure 102 is displaced or pushed in a second direction 166, (e.g. upward direction) such that the proximal end 162 of the collection membrane 154 may be inserted beneath the second distal end portion 136 via the second mid-slot 132b, and the first distal end portion 120. The proximal end 162 of the collection membrane 154 has the overlapping contact area 168 with the distal end 158 of the separation membrane 152. The outer flexure 104 and inner flexure 102 is released from the pushed position to an initial rest position so as to apply pressure on the separation membrane 152 and collection membrane 154 about the overlapping contact area 168. In the illustrated embodiment, the inner flexure 102 and outer flexure 104 apply uniform pressure in the transverse direction 124 across the distal end 158 of the separation membrane 152 and proximate to the proximal end 162 of the collection membrane 154 to facilitate proper plasma separation and collection from the blood samples.
(33) During usage of the device 150, the blood samples (not shown in
(34) In accordance with embodiments discussed herein, a single piece substrate facilitates accurate positioning of the membranes. The substrate with flexures design and homogenous material provides uniform pressure at an overlapping contact area of the membranes. The arc shaped clips avoids damaging the membranes. Due to less tolerance requirement, the substrate may be easy to use and manufacture.
(35) In accordance with other embodiments, a method is provided to provide for a protocol wherein the blood collected is for cell-free DNA (cfDNA) analysis such that genomic DNA (gDNA) is limited in the separated plasma fraction. Cell-free DNA is defined as DNA with a low-molecular weight DNA having an average molecular weight of approximately less than or equal to 1 kB, and that is substantially free of genomic DNA (gDNA) defined as having a higher average molecular weight approximately greater than 10 kB. Substantially free is defined as having less than approximately 10% gDNA present in collected cfDNA sample. As such, Proper analysis of cell-free DNA requires very low presence of genomic DNA in a sample. Significant contamination with genomic DNA can impair the sensitivity of cell-free DNA assays. This is typically avoided with venous blood by centrifuging the sample immediately after collection or by using proprietary stabilization reagents. However, neither solution is applicable to finger stick blood, which is collected in very small volumes
(36) However, collecting cfDNA from finger stick blood is not a routine process. It was found that standard milking or squeezing of the finger, often used in finger stick blood sampling, releases significant genomic DNA contamination into the collected plasma fraction. In one embodiment, it was found that, a controlled tourniquet type pressure applied to the finger prevents genomic DNA contamination of the fractionated plasma sample. Without limiting to a specific hypothesis, it appears that building capillary bed pressure using a tourniquet can eliminate gDNA contamination of the finger stick plasma sample.
(37) As such, a method for collecting finger stick blood, for downstream genetic analysis of cell-free DNA, is possible by applying a tourniquet to increase capillary pressure in a finger. The tourniquet maybe comprised of a rubber band or elastic material placed around the first, second, or third digit of a subject's hand. In one embodiment, the method, as illustrated in flow chart of
(38) As shown further in
(39) In certain embodiments, a kit may also be provided to allow collection, isolation, and, optionally, transport of cell-free plasma for downstream analysis of cell-free DNA. In certain embodiments, the kit may include the device for separating and collecting plasma, the device comprising a separation membrane, a collection membrane, and a substrate. The substrate, as shown prior in
(40) In certain embodiments, the kit may further comprise a lancet for producing the finger prick. In certain embodiments the lancet is a pressure-activated lancet. In certain other embodiments, the kit may also comprise instructions for use. In certain embodiments, the kit may also comprise a capillary or transfer tube for collecting the blood drop from the lanced or incised finger and subsequently dispensing the blood onto the device for separating and collecting plasma.
(41) In certain embodiments the instructions may be sufficiently detailed as to provide methods that further facilitate blood collection and efficiency. For example the instructions may include parameters for preparing the hand and finger to insure proper blood flow including temperature and position, methods of applying the tourniquet to the finger, methods of sterilization, lancing, and actual blood collection. The instructions may further provide detail on using the plasma clip device.
(42) For example an exemplary method, which would be included in instructions, may include a series of steps to prepare of the finger for sampling, applying the finger tourniquet, sterilization, lancing, blood collection, blood dispensing, and post-procedure storage.
(43) For preparation, instructions may state for example; hand-warming is encouraged to stimulate blood flow prior to lancing. A preferable practice is to hold hands under warm water for approximately 2 minutes, but other possibilities include using a chemical heater (e.g. crystalline-activated pouch) or generating friction by rubbing the hands together vigorously. To achieve proper blood flow, hands should be positioned below the heart and muscles should be relaxed. This is typically achieved by seating the donor comfortably in a chair and loosely placing the arm on a low surface or table.
(44) For applying the tourniquet, the instructions may state; select the donor's non-dominant hand (e.g. choose left hand if donor is right-handed) and ideally select the donor's middle finger. Alternative sites include the ring and index fingers. Loop a rubber band or equivalent tourniquet material around the last digit of the finger and then twist and continue to loop around the finger several times to create a tourniquet. Leave a loop available for easy removal. Pressure will build at the fingertip and may appear slightly red or engorged. It is advisable that the donor or an assistant holds and pulls on the free loop of the tourniquet during the procedure.
(45) Instructions related to sterilization may include; choose a side of the fingertip and swipe with a sterilizing wipe or alcohol pad. Dry the area with a piece of sterile gauze.
(46) For lancing, the instructions may include depending on the type and source of lancet provided; twist-off the protective cap of the lancet and place toward the side of the sterilized finger. Be careful to avoid the center of the fingertip as this may be calloused or contain a higher density of nerve endings that may increase pain sensation. Press down on the lancet until you hear a clicking noise. Pressure-activated lancets are will create an incision after the spring is engaged (clicking noise). Please abort the procedure if no clicking noise is heard, as the incision may be superficial, and begin again on a new finger (e.g. ring or index finger).
(47) For blood collection, the instruction may include; Wipe away the first evidence of blood immediately after lancing. Then apply mild but constant pressure on the finger. Hold the self-filling capillary horizontal to the incision site and touch against a forming blood droplet (repeat for each droplet if blood flow is slow). Self-filling capillaries (e.g. Microsafe, Safe-Tec Clinical Products, LLC, Ivyland Pa.) will self-fill to the black line printed on the plastic shaft and then self-stop. Do not press the plastic bulb during this step. When the collected blood reaches the black line and stops filling, withdraw pressure on the fingertip. Release the free loop of the rubber band to reduce the pressure of the finger tourniquet
(48) For blood dispensing, the instructions may include how to use and position the device which may be referred to by a number of names including for example a plasma collection device; Place the blood sampling device on a flat surface. If there is significant amount of blood on the outside of the capillary, wipe clean with sterile gauze. Immediately hold the filled capillary upright over the bottom of the plasma separation device. Dispense the collected blood by slowly and evenly pressing on the plastic bulb of the filled capillary. Keep the capillary fixed in one place over the bottom of the plasma separation device while dispensing. Discard the capillary when all blood is dispensed onto the plasma separation device.
(49) Post-procedure instructions may include; let the blood sampling device sit undisturbed while the finger tourniquet is completely removed and the incision site is cleaned. Apply pressure to the incision using sterile gauze if bleeding persists. If necessary, raise the hand above the heart to assist in clotting. Observe the undisturbed blood sampling device approximately 5-10 minutes post-procedure and observe whether the blood drop is still raised on the filter and if filter still appears wet. If no raised wet droplet of blood is observed and straw-color plasma starts to appear on the top of the plasma separation device then the sample can be placed back into a storage container, if provided. Label as appropriate. Maintain the sample at room temperature.
(50) In certain embodiments graphical or actual pictures may be included to further illustrate the procedure.
EXPERIMENTAL
(51) Several different parameters were tested under controlled conditions, including (1) type of lancet, (2) effect of milking, (3) finger selection, (4) tourniquet options, and (5) effect of residual ethanol on the finger after surface decontamination.
(52) To test these parameters, approximately 75 l of finger prick blood was applied onto plasma separation devices fitted with glass fiber and cellulose membranes (for separating and storing plasma, respectively), and samples were allowed to dry to create dried plasma spots. Devices, with the blood and plasma spotted membranes, were stored at ambient temperature (but controlled humidity) for at least three (3) days. Cellulose strips containing dried plasma were slid-away from the plasma separation device and extracted using DNA Extractor SP (Wako Chemicals USA, Inc. Richmond, Va.), and plasma DNA was analyzed by 2% gel electrophoresis (
(53) These finger prick tests revealed a number of novel learnings. First, pressure-activated lancets (e.g. Microtainer Contact-Activated Lancets Pink, Becton, Dickinson and Company, Franklin Lakes, N.J.) showed better lancing efficiency than spring-activated lancets (e.g. UniStik3, Owen Mumford, Oxford, United Kingdom). Second, vigorously milking the finger to acquire 75 L of capillary blood resulted in significant genomic DNA contamination (depicted in the gel in
(54) While only certain features of embodiments have been illustrated and described herein, many modifications and changes will occur to those skilled in the art. It is, therefore, to be understood that the appended claims are intended to cover all such modifications and changes as falling within the spirit of the invention.