PROCESS FOR PRODUCING FORMATE USING OXYGEN-TOLERANT ENZYMES
20240209400 ยท 2024-06-27
Inventors
Cpc classification
C12P7/40
CHEMISTRY; METALLURGY
International classification
Abstract
In a process for producing formate, a mixed enzyme by mixing hydrogenase (H.sub.2ase) with oxygen tolerance and formate dehydrogenase (FDH) with oxygen tolerance is prepared, and the mixed enzyme and a gas including H.sub.2, CO.sub.2 and NAD.sup.+ are mixed such that formate may be produced even in the presence of oxygen, and thereby utilizing hydrogen sources including oxygen, such as coke oven gas.
Claims
1. A process for producing formate, the process comprising: preparing a mixed enzyme by mixing hydrogenase (H.sub.2ase) with oxygen tolerance and formate dehydrogenase (FDH) with oxygen tolerance; and mixing the mixed enzyme and a gas including H.sub.2, CO.sub.2 and Nicotinamide adenine dinucleotide phosphate (NAD.sup.+).
2. The process of claim 1, wherein the gas including H.sub.2 contains O.sub.2.
3. The process of claim 1, wherein the gas including H.sub.2 is obtained from any one source selected from the group consisting of byproduct hydrogen incidentally generated in a process of a petrochemical or steel industry, gas derived from plastic or solid waste, coke, naphtha, volcanic gas, mineral water, coal gas, solar heat, algae emission, biomass, natural gas, fossil fuel, coal, peat, petroleum and natural gasoline.
4. The process of claim 1, wherein the hydrogenase is derived from any one strain selected from the group consisting of Ralstonia eutropha, Escherichia coli and Aquifex aeolicus.
5. The process of claim 1, wherein the formate dehydrogenase is derived from any one strain selected from the group consisting of Rhodobacter capsulatus, Desulfovibrio vulgaris, Clostridium carboxidivorans and Methylobacterium extorquens.
6. The process of claim 1, wherein the hydrogenase comprises the amino acid sequence of any of SEQ ID NO: 1 to SEQ ID NO: 5.
7. The process of claim 1, wherein the formate dehydrogenase comprises the amino acid sequence of any of SEQ ID NO: 6 to SEQ ID NO: 8.
8. The process of claim 2, wherein the gas including H2 contains 5% or less of O.sub.2.
9. The process of claim 2, wherein the gas including H2 contains 2% or less of O.sub.2.
10. The process of claim 1, wherein the hydrogenase and the formate dehydrogenase are mixed in a ratio of 5 to 25:1.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0026] The above and other aspects, features and other advantages of the present invention will be more clearly understood from the following detailed description taken in conjunction with the accompanying drawings, in which:
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DETAILED DESCRIPTION OF THE INVENTION
[0036] The present invention provides a process for producing formate using oxygen-tolerant enzymes.
[0037] The present invention provides a process for producing formate using oxygen-tolerant enzymes, which includes preparing a mixed enzyme by mixing hydrogenase with oxygen tolerance and formate dehydrogenase with oxygen tolerance; and mixing the mixed enzyme and a gas including H.sub.2, CO.sub.2 and NAD.sup.+, such that formate may be produced even in the presence of oxygen, and thereby utilizing hydrogen sources including oxygen, such as coke oven gas. That is, the present invention provides a process for producing formate, which is effective in solving the problem in that the production of formate was impossible due to the use of conventional hydrogenase and formate dehydrogenase, which are cheap and sustainable H.sub.2 sources but contain O.sub.2.
[0038] The present invention uses the mixed enzyme obtained by mixing hydrogenase with oxygen tolerance and formate dehydrogenase with oxygen tolerance. In the present invention, the oxygen tolerance means that the enzyme maintains activity without being deactivated even under a condition where oxygen is present.
[0039] The hydrogenase of the present invention refers to an enzyme that catalyzes the oxidation of hydrogen molecule (H.sub.2). In the present invention, the oxidation of hydrogen through hydrogenase may be paired up with the reduction of an electron acceptor such as NAD.sup.+ or Nicotinamide adenine dinucleotide phosphate (NADP.sup.+), etc.
[0040] The hydrogenase of the present invention is not limited to those having a specific amino acid sequence or derived from a specific organism as long as they can catalyze the oxidation of hydrogen molecules while having oxygen tolerance.
[0041] In one embodiment, the hydrogenase of the present invention may be derived from aerobic microorganisms.
[0042] In one embodiment, the hydrogenase of the present invention may be derived from any one strain selected from the group consisting of Ralstonia eutropha, Escherichia coli and Aquifex aeolicus.
[0043] In one embodiment, the hydrogenase of the present invention may be [NiFe] H.sub.2ase.
[0044] In one embodiment, the hydrogenase of the present invention may include a heterodimeric [NiFe] hydrogenase (HoxHY) subunit and a diaphorase (HoxFU) subunit.
[0045] In one embodiment, the hydrogenase of the present invention may include the amino acid sequence of any of SEQ ID NO: 1 to SEQ ID NO: 5.
[0046] In one embodiment, the hydrogenase with oxygen tolerance has activity under a condition where oxygen concentration is 10% or less, 9% or less, 8%; or less, 7% or less, 6% or less, 5=t or less, 4% or less, 3 or less, 2 or less, 10 or less, 0.5 or less, or 0.1% or less.
[0047] In one embodiment, the oxygen tolerance of the hydrogenase of the present invention may be attributed to the reduction of O.sub.2 bound to NiFe active site into either hydrogen peroxide or water.
[0048] Formate dehydrogenase of the present invention refers to an enzyme that catalyzes the reduction of carbon dioxide (CO.sub.2) into formate. In the present invention, the reduction of carbon dioxide through formate dehydrogenase may be paired up with the oxidation of an electron donor such as NADH or Nicotinamide adenine dinucleotide phosphate (NADPH).
[0049] In the present invention, the formate dehydrogenase is not limited to those having a specific amino acid sequence or derived from a specific organism as long as they can catalyze the reduction of carbon dioxide into formate while having oxygen tolerance.
[0050] In one embodiment, the formate dehydrogenase of the present invention may be derived from aerobic microorganisms.
[0051] In one embodiment, the formate dehydrogenase of the present invention may be derived from any one strain selected from the group consisting of Rhodobacter capsulatus, Desulfovibrio vulgaris, Clostridium carboxidivorans and Methylobacterium extorquens.
[0052] In one embodiment, the formate dehydrogenase of the present invention may include the amino acid sequence of any of SEQ ID NO: 6 to SEQ ID NO: 8.
[0053] In one embodiment, the formate dehydrogenase of the present invention may include an FdsA subunit containing a bis(molybdopterin guanine dinucleotide) cofactor and an FdsGB diaphorase subunit.
[0054] In one embodiment, the formate dehydrogenase with oxygen tolerance has activity under a condition where oxygen concentration is 10%; or less, 9%; or less, 8% or less, 7% or less, 6% or less, 5% or less, 4% or less, 3 or less, 2.5% or less, 2% or less, 1.5% or less, 1% or less, 0.5% or less, 0.3% or less, or 0.1% or less.
[0055] In one embodiment, the oxygen tolerance of the formate dehydrogenase of the present invention may be attributed to the reduction of O.sub.2 into hydrogen peroxide.
[0056] A mixing ratio of the hydrogenase with oxygen tolerance and the formate dehydrogenase with oxygen tolerance may be appropriately selected within a range where it is possible to produce formate, and is not limited to a specific ratio.
[0057] In one embodiment, the hydrogenase with oxygen tolerance and the formate dehydrogenase with oxygen tolerance may be mixed in a ratio of 0.1-50:1 (U/mL), such as 1-50:1, 5-50:1, 5-40:1, 5-30:1, 5-25:1, 5-20:1, 5-15:1, 10-40:1, 10-30:1, 10-20:1, 15-40:1, 15-35:1, 15-30:1, 15-25:1, 20-40:1 or 20-30:1.
[0058] The present invention uses a gas including H.sub.2. The gas including H.sub.2 of the present invention is not limited to a specific composition as long as it includes H.sub.2, and is also not limited to one obtained from a specific source.
[0059] In one embodiment, the gas including H.sub.2 may be obtained from any one source selected from the group consisting of byproduct hydrogen incidentally generated in processes such as a petrochemical or steel industry, gas derived from plastic or solid waste, cokes, naphtha, volcanic gas, mineral water, coal gas, solar heat, algae emissions, biomass, natural gas, fossil fuel, coal, peat, petroleum and natural gasoline.
[0060] In one embodiment, the gas including H.sub.2 of the present invention may be coke oven gas produced from the steel industry.
[0061] In one embodiment, the gas including H.sub.2 of the present invention may be byproduct hydrogen.
[0062] In one embodiment, the gas including H.sub.2 of the present invention may be a gas derived from plastic or solid waste.
[0063] The gas including H.sub.2 of the present invention may contain O.sub.2. The gas including H.sub.2 which contains O.sub.2 of the present invention is not limited to a specific composition as long as it includes H.sub.2 and O.sub.2, and is also not limited to one obtained from a specific source.
[0064] In one embodiment, the gas including H.sub.2 of the present invention may contain O.sub.2 of 60% or less, 50% or less, 40% or less, 30% or less, 20% or less, 10% or less, 9% or less, 8% or less, 7% or less, 6%; or less, 5%; or less, 4% or less, 3% or less, 2% or less, 1% or less, 0.5% or less, or 0.1% or less based on a total weight of the gas.
EXAMPLE
1. Materials
[0065] The 5? In-Fusion HD Enzyme Premix was purchased from Takara Bio (Kusatsu, Japan). Strep-Tactin XT 4 Flow high-capacity resin was obtained from IBA Life Sciences (Gottingen, Germany). Disposable PD-10 desalting columns were purchased from Cytiva (Marlborough, MA, USA). Vivaspin 6 centrifugal concentrators with a molecular weight cutoff (MWCO) of 100 kDa were purchased from Sartorius (G?ttingen, Germany). A polypropylene column (1 mL) was purchased from Qiagen (Hilden, Germany). The Ziptip C.sub.18 resin was purchased from Millipore (Burlington, MA, USA). All other chemical reagents were purchased from Sigma-Aldrich (St. Louis, MO, USA) unless otherwise stated.
2. Experimental Method
2.1 Construction of Plasmids and Strains
[0066] To construct the Strep-Tag II-fused Rhodobacter capsulatu-derived formate dehydrogenase (RcFDH) expression plasmid, pTrcHis-RcFDH was used as a template. Injection cloning was performed to substitute the hexahistidine-tag for strep tag II. pTrcHis-RcFDH was amplified by PCR with the in-fusion primer (FW: SEQ ID NO: 9, RV: SEQ ID NO: 10). The PCR product was mixed with 5? In-Fusion HD Enzyme Premix to generate pTrcHis-strep-RcFDH. The E. coli MC1061 strain was transformed with pTrcHis-Strep-RcFDH, and R. eutropha HF210 [pGE771] strain was used as the Ralstonia eutropha-derived hydrogenase (ReSH)-expressing strain.
2.2 Expression of ReSH AND RcFDH
[0067] For the expression of ReSH and RcFDH, a 7 L scale fermenter was used. First, a 10? H16 buffer (pH 7.0) containing 250 mM Na.sub.2HPO.sub.4 and 110 mM KH.sub.2PO.sub.4 was used as a medium. For 1 L of fructose-ammonium (FN) medium, 100 mL of 10? H16 buffer was mixed with 850 mL of sterile water (additional 13% (w/v) of Bacto agar in the case of solid agar plates) and autoclaved. Next, 10 mL of 20% (w/v) NH.sub.4Cl, 1 mL of 20% (w/v) NH.sub.4Cl, 1 mL of 20% (w/v) MgSO.sub.4*7H.sub.2O, 1 mL of 1% (w/v) CaCl.sub.2*H.sub.2O, 1 mL of 0.5% (w/v) FeCl.sub.3*6H.sub.2O (in 0.1 N HCl), 1 mM NiCl.sub.2, and 1.25 mL of 40% (w/v) D-fructose were mixed and filled up to 1000 mL with sterile H.sub.2O. A single colony of R. eutropha was pre-cultured in 50 mL of FN medium containing 10 ?g mL.sup.?1 tetracyclin until the OD at 436 nm reached 1. For the main culture, 5 L of modified fructose-glycerol-ammonium (FGN.sub.mod) with 0.05% (w/v) glycerol, 5 mL of SL6 trace element solution, and 5 mL of 1 mM ZnCl.sub.2 (added to the FN medium containing 10 ?g/mL tetracycline) were prepared in the fermenter. The pre-culture was inoculated into the FGN.sub.mod medium and subjected to 300 rpm shaking and 1 VVM aeration at 30? C. The pH range was maintained between 6.9 to 7.0 through automatic injection of 1 N NaOH. After 24 h, 5 mL of 1 mM NiCl.sub.2 was added. When the OD at 436 nm reached 9-11, the cells were harvested by centrifugation at 6,000?g for 10 min, and stored at ?80? C.
[0068] For RcFDH expression, a single-cell colony was pre-cultured in Luria-Bertani (LB) medium containing 150 ?g mL.sup.?1 ampicillin for 12 h at 37? C. For the main culture, 5 L of LB medium containing 150 ?g mL.sup.?1 ampicillin, 1 mM sodium molybdate, and 20 ?M isopropyl ?-D-1-thiogalactopyranoside was prepared in the fermenter. The pre-culture was inoculated into the LB medium and subjected to 100 rpm shaking and 0.1 VVM aeration at 30? C. After 24 h, the cells were harvested by centrifugation at 6,000?g for 10 min, and stored at ?80? C.
2.3 Purification of ReSH and RcFDH
[0069] To purify ReSH and RcFDH, cell pellets were resuspended in 50 mM potassium phosphate buffer (pH 7.0) (Kpi buffer) containing 1 mg/mL lysozyme at a concentration of 1 g/10 mL. The resuspended cells were lysed by sonication (amplitude 28%, on/off 2 s/4 s) for 1 h. Insoluble cell debris was removed by centrifugation at 13,000?g for 30 min. Strep-Tactin XT 4 Flow high-capacity resin (2 mL) was mixed with the clear supernatants and incubated at 4? C. for 30 min. The resin was washed with Kpi buffer containing 300 mM potassium chloride on a gravity-flow polypropylene column to remove any impurities. The proteins were eluted with 3 mL of Kpi buffer containing 50 mM biotin, and buffer-exchanged with Kpi buffer containing 10 mM potassium nitrate using a PD-10 column. Protein purity was verified by SDS-PAGE (
2.4 Matrix-Assisted Laser Desorption Ionization-Time of Flight (MALDI-TOF) Mass Spectrometry
[0070] Proteins in buffer were desalted using Ziptip C according to the manufacturer's protocol. The purified ReSH and RcFDH were mixed in a 1:1 (v/v) ratio with a sinapinic acid-saturated matrix solution consisting of 30% acetonitrile, 0.1% trifluoroacetic acid (TFA) and 70's water (v/v). The mixture was subjected to mass characterization by Autoflex speed (Bruker Corporation, Billerica, USA).
2.5 Enzyme Kinetics
[0071] The enzyme reaction kinetics of ReSH were measured for the NAD-dependent oxidation of H.sub.2 to H.sup.+ in the presence or absence of O.sub.2. A sealing cuvette was filled with 900 ?L of Kpi buffer containing NAD.sup.+ and sealed; then, 100% H.sub.2 and a mixed gas consisting of 10% O.sub.2 and 90% N.sub.2 (or 100% N.sub.2 for anaerobic conditions) were injected simultaneously for 30 min at 10 mL/min. ReSH (2 mL, 80 nM) was purged with 10 mL/min N.sub.2 gas bubbling in a 10 mL sealing vial for 30 min to remove O.sub.2 from the air. The reaction was initiated by mixing 100 ?L of 80 nM ReSH with a gas-saturated solution in the sealed cuvette. The final concentration of NAD.sup.+ was varied from 0 to 2 mM.
[0072] The enzyme reaction kinetics of RcFDH were measured for NADH-dependent reduction of CO.sub.2 to formate in the presence or absence of O.sub.2. The sealing cuvette was filled with 900 ?L of Kpi buffer containing NADH and sealed; then, 100% CO.sub.2 and a mixed gas consisting of 4% O.sub.2 and 96 N.sub.2 (or 100% N.sub.2 for anaerobic conditions) were injected simultaneously for 30 min at 10 mL/min, respectively. RcFDH (2 mL, 2 ?M) was purged with 10 mL/min N.sub.2 gas bubbling in a 10 mL sealing vial for 30 min to remove O.sub.2 from the air. The reaction was initiated by mixing 100 ?L of 2 ?M RcFDH with a gas-saturated solution in the sealing cuvette. The final concentration of NADH was varied from 0 to 1 mM.
[0073] All measurements were performed in triplicate based on the change in the absorbance at 365 nm in the cuvette, measured using a T60 UV-Vis spectrophotometer (PG Instruments Ltd, Lutterworth, UK). The change in the absorbance over 1 min was plotted using the Michaelis-Menten equation to calculate the kinetic parameters.
2.6 Formate Production and Quantification
[0074] For the cascade reaction in the presence or absence of O.sub.2, the gas content was controlled in a 20 mL polytetrafluoroethylene (PTFE) septa sealing vial. The vial was filled with 500 ?L of reaction solution containing 3.2 U/mL ReSH, 0.16 U/mL RcFDH, 1 mM NAD.sup.+ and 0.5 M Kpi buffer, and then sealed. A needle was inserted into the septa for gas evacuation. Then, 10 mL/min CO.sub.2 and 20 mL/min N.sub.2/O.sub.2 mixed gas were injected for 30 min (the needle did not enter the reaction solution). The O.sub.2 ratios of the mixed gas varied from 0 to 2-4%; therefore, the final concentrations of O.sub.2 were 0, 1 and 2%. The reaction was initiated by a 10 mL/min H.sub.2 gas injection. Formate production was sampled every 20 min during incubation for 1 h, and 10 ?L of 6 N H.sub.2SO.sub.4 was added to the 100 ?L sample to inactivate the enzymes immediately. Additionally, 240 ?L of distilled water was mixed with the sample, and the aggregate enzymes were removed by centrifugation at 13,000?g. Formate production was quantified by HPLC (1260, Agilent, CA, USA) equipped with a diode-array detector and an Aminex HPX-87H column (BIO-RAD, CA, USA) with a mobile phase of 5 ?M H.sub.2SO.sub.4 at a flow rate of 0.6 mL/min. The retention time of formate was 13.010 min. The formate concentration was calculated using a formate calibration curve (
3. Results
3.1 Preparation of ReSH and RcFDH
[0075] ReSH and RcFDH were expressed in R. eutropha and E. coli, respectively. These were purified using affinity resins, as described in the Materials and methods.
[0076] Five bands of purified ReSH subunits were observed, which matched with the expected molecular weights (HoxF, 68,110 Da; HoxH, 54,863 Da; HoxU, 26,173 Da; HoxY, 22,881 Da; HoxI, 18,567 Da) (
[0077] Three bands of purified RcFDH subunits were observed, which were consistent with the expected molecular weights (FdsA, 104,466 Da; FdsB, 52,699 Da; FdsG, 17,304 Da) (
[0078] Both enzymes showed high purity. The identity of the purified enzymes was confirmed by MALDI-TOF mass spectrometry. The experimentally determined masses of ReSH subunits were 67,542, 54,492, 26,038, 22,836 and 18,545 m/z, which matched well with the expected masses (68,111, 54,864, 26,174, 22,882 and 18,568 m/z, respectively) with less than 1% deviation (
[0079] These results showed that the purified ReSH and RcFDH were successfully prepared.
3.2 Enzyme Kinetics in the Presence or Absence of O.SUB.2
[0080] The present inventor investigated the enzymatic activities of ReSH and RcFDH in the presence or absence of O.sub.2. The NAD.sup.+-dependent H.sub.2 oxidation reaction rate by ReSH was measured, and the Michaelis-Menten curve was fitted to calculate the kinetic parameters using Origin 2022 program (
TABLE-US-00001 TABLE 1 O.sub.2 concentration (%) k.sub.cat(s.sup.?1) K.sub.m(mM)(NAD.sup.+) 0 39.7 ? 1.5 0.393 ? 0.041 5 39.2 ? 1.3 0.364 ? 0.033
TABLE-US-00002 TABLE 2 O.sub.2 concentration (%) k.sub.cat(s.sup.?1) K.sub.m(mM)(NADH) 0 0.703 ? 0.043 0.166 ? 0.030 2 0.699 ? 0.035 0.141 ? 0.022
3.3 Cascade Reaction Condition Control
[0081] The present inventor determined the NAD.sup.+, ReSH and RcFDH contents for the cascade reaction of ReSH and RcFDH. Due to the relatively low k.sub.cat value (Tables 1 and 2), the rate-determining step was the CO.sub.2 reduction by RcFDH. Because the reaction rate of RcFDH was saturated at NADH concentrations above 1 mM (
3.4 Formate Production Under O.SUB.2 .Conditions
[0082] The present inventor demonstrated that H.sub.2 and CO.sub.2 were converted into formate under 0% to 2% O.sub.2 conditions. ReSH, RcFDH and 1 mM NAD.sup.+ were mixed and placed in a 20 mL sealing vial. Changes in the concentrations of NADH and formate over time were investigated when O.sub.2 (at a controlled concentration), H.sub.2 and CO.sub.2 were simultaneously and continuously injected into the vial. During the injection of the gases, under all 0; conditions between 0% and 2%, NAD.sup.+ was reduced to NADH and maintained at 1 mM by H.sub.2 oxidation of ReSH (
4. Conclusions
[0083] The present inventor demonstrated the conversion of H.sub.2 and CO.sub.2 into formate using an NAD.sup.+-dependent cascade reaction of O.sub.2-tolerant H.sub.2ase and O.sub.2-tolerant FDH in the presence of O.sub.2.
REFERENCE TO AN ELECTRONIC SEQUENCE LISTING
[0084] A sequence listing electronically submitted on Dec. 21, 2023 as a XML file named 20231221_LC0592321_TU_SEQ.XML, created on Dec. 21, 2023 and having a size of 13,037 bytes, is incorporated herein by reference in its entirety.