METHOD FOR PREPARING AND CERTIFYING NOVEL CORONAVIRUS NUCLEOCAPSID PROTEIN
20240199707 ยท 2024-06-20
Inventors
- Liqing WU (Beijing, CN)
- Xinhua DAI (Beijing, CN)
- Wei MI (Beijing, CN)
- Yahui Liu (Beijing, CN)
- Tao Peng (Beijing, CN)
- Jie XIE (Beijing, CN)
Cpc classification
C07K1/36
CHEMISTRY; METALLURGY
Y02A50/30
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
C07K14/165
CHEMISTRY; METALLURGY
International classification
C07K14/165
CHEMISTRY; METALLURGY
Abstract
Disclosed in the present invention is a method for preparing and certifying a novel coronavirus nucleocapsid protein (nCOV N protein) reference material, the method including: purification and dilution of a raw material of the nCOV N protein; preliminary uniformity test and packaging of solution of a candidate nCOV N protein reference material; characterization of physicochemical properties of the solution of the candidate nCOV N protein reference material in the packaging units; uniformity and stability test of the nCOV N protein reference material in the packaging unit; measurement of standard N protein content of the nCOV N protein reference material, determination and statistical test of standard value of the nCOV N protein reference material; and uncertainty assessment of certified result of the standard value of the nCOV N protein reference material.
Claims
1. A method for preparing and certifying a novel coronavirus nucleocapsid protein (nCOV N protein), comprising the following steps: I. purification and dilution of a raw material of the nCOV N protein (a) purification of the raw material of the nCOV N protein the nCOV N protein is an N protein sequence of SEQ ID NO: 1 as set forth below, or a protein sequence with 3 to 10 histidine or lysine attached to one or both ends of the N protein sequence of SEQ ID NO: 1: TABLE-US-00010 1 MSQNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSP 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNARIVLQ 161 LPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGQCELIRQGTDYKHWPQIAQFAPSASAFFGMSRI 321 GMEVTPSGTWLTYIGAIKLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKQRKKKADETQALPCRQKKQQTVFLLPAADL 481 DQFSKQLQCSMSSADSTQA the raw material is from a commercially available nCOV N protein biochemical reagent with a purity of 90% to 95%, for obtaining a candidate nCOV N protein reference material with a high purity, the biochemical reagent is purified by an isoelectric focusing method and/or a molecular sieve method to give the candidate nCOV N protein reference material with a purity of 98.5% or above; (b) preliminary measurement of concentration of the candidate nCOV N protein reference material .sup.13C isotope-labeled valine and phenylalanine with a concentration of 0.001 to 1 mg/mL are added into to 1 to 100 ?L of the candidate nCOV N protein reference material, the mixture is subject to centrifugal concentration or nitrogen blowing, and then 100 to 1000 ?L of concentrated hydrochloric acid with a concentration of 6 to 8 mol/L is added thereto, and sealed while passing nitrogen for protection, the mixture is hydrolyzed in an oven at 110? C. to 150? C. for 24 h to 72 h to give a hydrolysate, and after hydrolysis, an amino acid content in the hydrolysate is measured by high performance liquid chromatography-isotopic dilution mass spectrometry (HPLC-IDMS) using national reference materials of valine and phenylalanine as standard, and an initial concentration of the candidate nCOV N protein reference material is calculated according to the N protein sequence of SEQ ID NO: 1; (c) dilution of the candidate nCOV N protein reference material the candidate nCOV N protein reference material, of which the concentration has been preliminarily measured, is diluted with PBS as solvent to a concentration ranging from 0.05 to 0.2 mg/g to give a diluted solution of the candidate nCOV N protein reference material; (II). preliminary uniformity test and packaging of the solution of the candidate nCOV N protein reference material (d) preliminary uniformity test of the solution of the candidate nCOV N protein reference material 3 sub-samples are taken from each of upper, middle, and lower parts of the diluted solution of the candidate nCOV N protein reference material in step (c), respectively, to obtain a total of 9 test samples, the 9 test samples are numbered and arranged in order, and the content of the nCOV N protein in each test sample is subject to a first test by isotopic dilution mass spectrometry (IDMS), amino acid analysis (AAA), or immunoassay, then the order is disrupted, and the content of the nCOV N protein in each test sample is subject to a second test, the above operations are repeated until each test sample is tested three times, obtaining 27 test results, and the uniformity of the content mean number of the first sample, that is, a standard value of the test results by the amino acid analysis-based HPLC-IDMS;
mean number of the second sample, that is, a standard value of the test results by the peptide fragment analysis-based HPLC-IDMS; s.sub.1.sup.2variance of the first sample,
2. The method for preparing and certifying a novel coronavirus nucleocapsid protein (nCOV N protein) of claim 1, wherein, in step (a), the biochemical reagent is purified by an isoelectric focusing electrophoresis instrument in which 0.01 to 1 mol/L of phosphoric acid and 0.01 to 1 mol/L of sodium hydroxide are used as electrophoresis solution at two ends of the isoelectric focusing electrophoresis instrument, respectively; after completion of the isoelectric focusing, fractions with isoelectric point around 10.5 are collected, and the biochemical reagent is then purified over a molecular sieve column, the appearance time of peak is monitored at an absorbance of 280 nm to collect the fractions during the period of the appearance time, the collected fractions are repeatedly purified over the molecular sieve column; after repeating the purification over the molecular sieve column three times, the fraction obtained at the last appearance time of peak is collected to complete the purification of the nCOV N protein.
3. The method for preparing and certifying a novel coronavirus nucleocapsid protein (nCOV N protein) of claim 2, wherein, in step (b), the number of the isotope-labeled atoms is not less than 3.
4. The method for preparing and certifying a novel coronavirus nucleocapsid protein (nCOV N protein) of claim 3, wherein, in step (f), the universal protein purity analysis method comprises: reversed HPLC, and/or ion exchange chromatography HPLC, and/or gel exclusion HPLC, and/or hydrophobic interaction HPLC, and/or immunoaffinity HPLC, which, co-operating with UV, and/or fluorescence, and/or differential refraction, and/or evaporative light scattering, and/or fluorescence electrospray ionization, and/or circular dichroism spectrometer, is used to characterize the purity of the reference material.
5. The method for preparing and certifying a novel coronavirus nucleocapsid protein (nCOV N protein) of claim 3, wherein, in step (f), the universal protein purity analysis method further comprises SDS-PAGE gel electrophoresis, and/or capillary electrophoresis, and/or chip electrophoresis, and/or two-dimensional electrophoresis, which, co-operating with UV and/or fluorescence, is used to characterize the purity of the reference material.
6. The method for preparing and certifying a novel coronavirus nucleocapsid protein (nCOV N protein) of claim 3, wherein, in step (f), the universal protein purity analysis method further comprises high performance liquid chromatography-mass spectrometry (HPLC-MS), and/or matrix-assisted laser-induced desorption time-of-flight mass spectrometry, which is used to characterize the purity of the reference material.
7. The method for preparing and certifying a novel coronavirus nucleocapsid protein (nCOV N protein) of claim 3, wherein, in step (f), the universal protein purity analysis method further comprises electrochemical method or nuclear magnetic resonance spectroscopy, which is used to characterize the purity of the reference material.
8. The method for preparing and certifying a novel coronavirus nucleocapsid protein (nCOV N protein) of claim 1, wherein, in step (0), in the test with the triple tandem quadrupole mass spectrometer, a positive ion mode and a selective ion monitoring (SIM) or multiple reaction monitoring (MRM) scanning mode are used.
Description
DETAILED DESCRIPTION
[0132] The present invention is further illustrated by reference to the following examples:
[0133] A method for preparing and certifying a novel coronavirus nucleocapsid protein (nCOV N protein) reference material of the present invention includes the following steps:
(I). Purification and Dilution of a Raw Material of the nCOV N Protein
[0134] (a) Purification of the raw material of the nCOV N protein
[0135] The nCOV N protein is an N protein sequence of SEQ ID NO: 1 as set forth below, or a protein sequence with (3 to 10) histidine or lysine attached to one or both ends of the N protein sequence of SEQ ID NO: 1:
TABLE-US-00003 1 MSENGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQHGKEDLKFPRGQGVPINTNSSP 81 DDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQ 161 LPQGTTLPKGFYAEGSRGGSQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQQ 241 QQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGQCELIRQGTDYKHWPQIAQFAPSASAFFGMSRI 321 GMEVTPSGTWLQYTGAIRLDDKDPNFKDQVILLNKHIDAYKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADL 401 DDFSKQLQQSMSSADSTQA
[0136] The raw material of the nCOV N protein was purchased from a biotechnology service company, which had a purity of about 95% as measured by high performance liquid chromatography-gel exclusion liquid chromatography. To give a candidate nCOV N protein reference material with a high purity, the above biochemical reagent was purified by a molecular sieve method or an isoelectric focusing method to give a candidate nCOV N protein reference material with a purity of 98.5% or above; and to give an active nCOV N protein with a high purity, the following conditions were employed for purification:
[0137] First, using the GE AKTA explorer Protein Purification Workstation, the commercially available raw material of the N protein as purchased was passed through Sephadex G75 gel column and eluted with PBS, the outflow signal was monitored at UV280 nm, and the fraction of the primary peak was collected. Taking bovine serum albumin as the certification standard, the concentration in the collection solution was measured by Coomassie brilliant blue (CBB) method. A total of 5 mL collection solution was collected, in which the N protein concentration was about 2 mg/mL. Then, the collection solution was diluted to 10 mL with water so that the N protein concentration therein was about 1 mg/mL. Then, 1 mL of solution was taken each time, and loaded into a self-made isoelectric focusing purification device, with 0.1 mol/L of phosphoric acid and 0.1 mol/L of NaOH as electrode solutions at the two ends of the electrode. The isoelectric focusing was performed at a voltage of 3000 V and a temperature of 10? C. At the same time, the isoelectric focusing profile of protein in lanes was detected by real-time CCD imaging signal. After completion of the isoelectric focusing, the fractions with isoelectric point of 10.5?0.2 were collected. The collected nCOV N protein fractions were further purified over Sephadex G75 molecular sieve column with PBS as mobile phase. The appearance time of peak was monitored at an absorbance of 280 nm to collect the fractions during the period of the appearance time. The purification was repeated over the molecular sieve column three times, and the fraction at the last appearance time of peak was collected to give the candidate nCOV N protein reference material. Taking bovine serum albumin as the standard, the N protein in the collected fraction was certified using the CBB method to give the candidate nCOV N protein reference material with a purity of 98.5% or above, which was diluted in water to about 0.1 mg/mL.
[0138] (b) Preliminary measurement of concentration of the candidate nCOV N protein reference material
[0139] To 50 ?L of the purified candidate nCOV N protein reference material was added 0.01 mg/mL of .sup.13C-labeled valine and phenylalanine (with the number of isotope-labeled atoms of 5 and 8, respectively), and then the mixture was subject to centrifugal concentration or nitrogen blowing. Then, (500) ?L of concentrated hydrochloric acid with a concentration of 6 mol/L was added thereto, and sealed while passing nitrogen for protection. The mixture was hydrolyzed in an oven at 110? C. for 36 hours to give a hydrolysate. After hydrolysis, taking the national reference material of valine and phenylalanine as the standard, the content of amino acids in the hydrolysate was measured using HPLC-IDMS, and the initial concentration of the candidate nCOV N protein reference material was calculated as 0.142 mg/g according to the N protein sequence of SEQ ID NO: 1.
[0140] (c) Dilution of the candidate nCOV N protein reference material
[0141] The candidate nCOV N protein reference material, of which the concentration has been preliminarily measured, was diluted with PBS to a concentration of (0.1) mg/g to give a diluted solution of the candidate nCOV N protein reference material;
(II). Preliminary Uniformity Test and Packaging of the Solution of the Candidate nCOV N Protein Reference Material
[0142] (d) Preliminary uniformity test of the solution of the candidate nCOV N protein reference material [0143] 3 sub-samples are taken from each of upper, middle, and lower parts of the diluted solution of the candidate nCOV N protein reference material in step (c), respectively, to obtain a total of 9 test samples, the 9 test samples are numbered and arranged in order, and the content of the nCOV N protein in each test sample is subject to a first test by IDMS, or amino acid analysis, or immunoassay, then the order is disrupted, and the content of the nCOV N protein in each test sample is subject to a second test, the above operations are repeated until each test sample is tested three times, obtaining 27 test results, and the uniformity of the content
TABLE-US-00004 TABLE 1 Results of preliminary uniformity test of the nCoV N protein reference material (mg/g) 1 2 3 Mean Sample 1 0.101 0.103 0.105 0.103 Sample 2 0.101 0.104 0.100 0.103 Sample 3 0.105 0.102 0.103 0.104 Q1 4.66667E?06 Q2 2.13333E?05 F 0.66 F.sub.crit 5.14
[0154] It can be seen from the results of uniformity test that the calculated F value is less than the critical value of F.sub.?,(v.sub.
[0155] (e) Packaging of the solution of the candidate nCOV N protein reference material
[0156] The solution of the candidate nCOV N protein reference material which passes the preliminary uniformity test in step (d) was packaged into 500 ?L silanized cryotubes with 10 ?L of the candidate solution in each silanized cryotube. The packaged solution of the candidate nCOV N protein reference material was labeled and consecutively numbered according to the packaging order to obtain a total of P packaging units, which were then stored in a refrigerator at ?80? C.
III. Characterization of Physicochemical Properties of the nCOV N Protein Reference Material
[0157] (f) Purity test of the nCOV N protein reference material in the packaging unit
[0158] The purity of the nCOV N protein reference material was analyzed using SDS-PAGE gel electrophoresis and HPLC gel exclusion chromatography.
[0159] The experimental steps of the SDS-PAGE gel electrophoresis are as follows: 20 ?L of N protein was taken from a packaged unit of the reference material and mixed with an equivalent volume of 1? electrophoresis loading buffer, boiled in a boiling water bath for 5 min. 10 ?L of N protein was loaded for each lane. The sample was isolated using Mini-PROTEAN precast gel from Bio-Rad Laboratories, Inc. at an electrophoresis voltage of 120 V and for an electrophoresis period of 45 min. After the completion of electrophoresis, it was stained with Coomassie brilliant blue, and then decolored with a methanol-acetic acid solution and imaged. A purity analysis was performed with the gel imaging system from BIO-RAD. No other visible protein bands appeared in the N protein lane, and the purity was >99%.
[0160] The experimental steps of HPLC-gel exclusion chromatography are as follows: [0161] Sample: A solution of the raw material of the N protein reference material, 0.1 mg/ml [0162] Loading volume: 10 ?L [0163] Chromatographic column: TSKGel 2000 SWxl gel exclusion chromatographic column, 7.8 mm?300 mm [0164] Mobile phase:water:acetonitrile:trifluoroacetic acid (70:30:0.1, v:v:v) [0165] Detection wavelength: 215 nm [0166] Flow rate: 0.5 mL/min
[0167] According to the collected chromatogram, the N protein purity was analyzed as 99.2% by an area normalization method, and there are no individual impurities with a content exceeding 0.1%.
[0168] (g) Characterization of molecular weight of the nCOV N protein reference material in the packaging unit
[0169] Using the SDS-PAGE gel electrophoresis and the matrix-assisted laser-induced desorption time-of-flight mass spectrometry, the molecular weight of the nCOV N protein reference material was measured.
[0170] The experimental conditions for SDS-PAGE gel electrophoresis are as follows: 20 ?L of N protein was taken from the packaged reference material unit and mixed with an equivalent volume of 1? electrophoresis loading buffer, and boiled in a boiled water bath for 5 min. 10 ?L of N protein was loaded for each lane, and a molecular weight Marker of the loaded protein was used in one of the lanes. The sample was isolated using Mini-PROTEAN precast gel from Bio-Rad Laboratories, Inc. at an electrophoresis voltage of 120 V and for an electrophoresis period of 45 min. After the completion of electrophoresis, it was stained with Coomassie brilliant blue, and then decolored with a methanol-acetic acid solution and imaged. According to the molecular weight of the Marker, the molecular weight of the N protein was calculated. From the electrophoretogram, the molecular weight of the N protein was measured as 45 kD which was consistent with the mean molecular weight of 45625 Da as calculated according to the theoretical sequence thereof.
[0171] The experimental conditions for the matrix-assisted laser-induced desorption time-of-flight mass spectrometry are as follows: First, 10 ?L of N protein raw material with a concentration of 0.1 mg/mL was fully mixed with Sinapinic acid (SA) matrix solution at 1:1 (v/v), and 2 ?L of the mixed liquor was taken to spot. After crystallization of sample, a matrix-assisted laser desorption-tandem time-of-flight mass spectrometer (linear mode) was used to characterize the molecular weight of the N protein, for which the acceleration voltage was 20 kV, and the scanning range of the mass-to-charge ratio (m/z) was 15000-100000. The initial data obtained from the experiments were analyzed via the flex Analysis software (with a signal to noise ratio of 3:1). From the mass spectrogram, the molecular weight of the N protein was measured as 45 kD which was consistent with the theoretical molecular weight of 45625 Da.
[0172] (h) Protein identification of the nCOV N protein reference material in the packaging unit
[0173] The experimental conditions for the protein identification of the nCOV N protein reference material are as follows: About 2 ?g protein was dissolved in 50 ?L of 50 mM ammonium bicarbonate containing 0.1% (w/v) RapiGest SF. 4 ?L of dithiothreitol (DTT) with a concentration of 0.1 mol/L was added into the sample. The sample was heated at 50? C. for 30 min, and 8 ?L of 0.1 mol/L iodoacetamide was added. After the sample was cooled to room temperature, it was left in dark for 40 min. 16 ?g trypsin (with a concentration of 20 ?g/100 ?L) was added into the sample, and the sample was incubated at 37? C. overnight. The digested sample was diluted 10 times with pure water for MALDI-TOF mass spectrometry analysis. The target protein was obtained in SWISSPROT database by MASCOT search, and the result was nCOV nucleocapsid protein.
[0174] (i). De novo sequencing of the nCOV N protein reference material in the packaging unit
[0175] About 200 ?g protein was dissolved in 500 ?L of 50 mM ammonium bicarbonate containing 0.1% (w/v) RapiGest SF. 160 ?g trypsin (with a concentration of 20 ?g/100 ?L) was added into the sample, and the sample was incubated at 37? C. overnight. The digested sample was isolated by reverse phase HPLC. All the peptide fragments with good isolation degree and correspondingly high peak signals were collected one by one, lyophilized, reconstituted in water containing 0.1% formic acid, and then spotted on a PVDF membrane. Each collected peptide fragment was subject to de novo sequencing with a protein sequencer based on the Edman principle. The sequences of all the peptide fragments were spliced to obtain a full-length sequence of the nCOV N protein. The sequences were spliced, and the result was consistent with the protein corresponding to the sequence of SEQ ID NO: 1.
[0176] (j) Identification and certification of impurity proteins in the nCOV N protein reference material in the packaging unit
[0177] When an individual impurity had a content exceeding 1% in the purity test of the nCOV N protein reference material, it was required to identify and certify the impurity; and when no individual impurity had a content exceeding 1% in the purity test, it was not required to identify and certify the impurity. In this example, the content of the impurity protein was less than 1%, and thus the identification and certification of the impurity were not required.
(IV). Uniformity and Stability Test of the nCOV N Protein Reference Material in the Packaging Unit
[0178] (k) Uniformity test of the nCOV N protein reference material in the packaging unit
[0179] The consecutively numbered packaging units are randomly sampled with a randbetween function in Excel, when P?200, the number m of the sampled packaging units is not less than 11; when 200<P?500, the number m of the sampled packaging units is not less than 15; when 500<P?1000, the number m of the sampled packaging units is not less than 25; when the packaging units P>1000, the number m of the sampled packaging units is not less than 30; according to the sampling order, the m sampled packaging units are re-numbered and arranged in order, the N protein content of the nCOV N protein reference material in the sampled packaging units is subject to a uniformity test by IDMS, or amino acid analysis, or immunoassay; during the test, the N protein in the nCOV N protein reference material in each sampled packaging unit is subject to a first test according to the above order, and then the order is disrupted, and the N protein content in the nCOV N protein reference material in each sampled packaging unit is subject to a second test, the above operations are repeated until the N protein in the nCOV N protein reference material in each sampled packaging unit is subject to a n.sup.th test, wherein n is an integer greater than or equal to 3, to give n test results, and an uniformity of the N protein in the nCOV N protein reference material in the packaging units are calculated and counted out according to the formulas below; [0180] when m samples are taken, m sets of precisely measured data are obtained according to the above test method under a condition of repeatability n, as shown below: [0181] No. 1: x.sub.11, x.sub.12 . . . x.sub.1n, with a mean value of
[0185] Sum of squares of between-group differences:
[0186] Sum of squares of intra-group differences:
[0187] Degree of freedom between groups: v.sub.1=m?1; degree of freedom within groups:
[0188] Statistical value F:
[0190] In this example, a total of 300 units of nCOV N protein reference materials were prepared. The 15 randomly selected N protein samples were analyzed by isotope dilution mass spectrometry in step (b). Each sample was analyzed in triplicate, and the results were shown in the table below:
TABLE-US-00005 TABLE 2 Uniformity test of the nCoV N protein reference material 1 2 3 Mean Sample 1 0.099 0.096 0.096 0.097 Sample 2 0.099 0.107 0.097 0.101 Sample 3 0.100 0.108 0.104 0.104 Sample 4 0.105 0.109 0.096 0.103 Sample 5 0.106 0.099 0.108 0.104 Sample 6 0.095 0.106 0.107 0.103 Sample 7 0.109 0.102 0.107 0.106 Sample 8 0.099 0.105 0.098 0.101 Sample 9 0.101 0.105 0.103 0.103 Sample 10 0.101 0.101 0.105 0.102 Sample 11 0.106 0.104 0.102 0.104 Sample 12 0.101 0.098 0.103 0.101 Sample 13 0.109 0.100 0.096 0.102 Sample 14 0.107 0.102 0.109 0.106 Sample 15 0.099 0.108 0.098 0.102 Q1 0.000221778 Q2 0.000585333 F 0.81 F.sub.crit 2.04
[0191] It can be seen from the results of the uniformity test that the calculated F value from the uniformity test of N protein content in the nCOV N protein reference material is less than the critical value of F.sub.?,(v.sub.
[0192] (l) Long-term stability test of the nCOV N protein reference material in the packaging unit [0193] a long-term stability test is performed for a period of not less than 6 months, in which 5 time points k are selected following a rule of first more and then less, and at each time point, the nCOV N protein reference material is sampled from at least 2 packaging units in step (e) to subject to a test in triplicate by IDMS, and/or amino acid analysis, and/or immunoassay for the N protein content of the nCOV N protein reference material in each packaging unit, and then an arithmetic mean value Y.sub.i of the test results at each time point is calculated, and fitted with the corresponding measuring time X.sub.i according to the linear model below:
[0207] If |b|<t.sub.0.95,k?2.Math.s(b), the slope was not significant, indicating that the nCOV N protein reference material was stable for long term; otherwise, it indicated that the nCOV N protein reference material was not stable.
[0208] The nCOV N protein reference material was subject to a long-term stability test for a period of 6 months, and the results of the stability test are shown in Table 3.
TABLE-US-00006 TABLE 3 Results of long-term stability test of the nCoV N protein reference material Time/month 1 2 3 Mean 0 0.104 0.108 0.099 0.1037 1 0.095 0.103 0.100 0.0993 2 0.102 0.108 0.108 0.1060 4 0.098 0.101 0.104 0.1010 6 0.107 0.097 0.095 0.0997
[0209] Taking the time as x axis and the content as y axis, it is calculated that k=?0.000505172, and intercept b=0.103253448. [0210] standard deviation
[0215] (m) Short-term stability test of the N protein content of the nCOV N protein reference material in the paukaging Unit
[0216] A short-term stability test is performed for a continuous period of not less than 7 days, in which 5 time points k are selected following a rule of first more and then less, and at each time point, the nCOV N protein reference material is sampled from at least 2 packaging units in step (e) and placed at a temperature ranging from ?20? C. to 40? C. for inspection, the N protein content of the nCOV N protein reference material in each packaging unit is tested in triplicate by IDMS, and/or amino acid analysis, and/or immunoassay, and then an arithmetic mean value Y.sub.i of the test results at each time point is calculated, and fitted with the corresponding measuring time X.sub.i according to the linear model below:
TABLE-US-00007 TABLE 4 Results of the short-term stability test of the nCoV N protein reference material at 4? C., mg/g Time/month 1 2 3 Mean 0 0.096 0.097 0.109 0.1007 1 0.096 0.103 0.099 0.0993 3 0.100 0.102 0.107 0.1030 5 0.108 0.101 0.101 0.1033 7 0.101 0.109 0.107 0.1057
[0231] Taking the time as x axis and the content as y axis, it is calculated that k=0.000801829, and intercept b=0.099834146. [0232] standard deviation
[0236] Since
(V). Determination of Standard Value of the N Protein Content of the nCOV N Protein Reference Material
[0238] (n) Determination of the N protein content in the nCOV N protein reference material by amino acid analysis-based HPLC-isotopic dilution mass spectrometer
[0239] First, the nCOV N protein reference materials were randomly taken as samples from at least 5 packaging units in step (e), and the N protein content in each of the above packaging units was tested in triplicate according to the method of step (b) to give a total of at least 15 test results, as shown in the table below:
TABLE-US-00008 TABLE 5 Test results of the N protein content by amino acid analysis-based HPLC-IDMS, mg/g 1 2 3 Mean Sample 1 0.099 0.096 0.096 0.097 Sample 2 0.099 0.107 0.097 0.101 Sample 3 0.100 0.108 0.104 0.104 Sample 4 0.105 0.109 0.096 0.103 Sample 5 0.106 0.099 0.108 0.104 Grand 0.1018 Mean
[0240] According to the K-S single-sample normality test, the Grabs method and/or Dixon method were used for outlier test, all the samples passed the above statistical test. Thus, the arithmetic mean value of all the results, 0.1018 mg/g, was taken as the standard value of the test results of the HPLC-IDMS.
[0241] (o) Determination of the N protein content of the nCOV N protein reference material by peptide fragment analysis-based HPLC-IDMS
[0242] The standard peptide fragment ITFGGPSDSTGSNQNGER and the corresponding isotope-labeled peptide fragment ITF*GGPSDSTGSNQNGER were synthesized, where F* was .sup.13C.sub.8-labeled phenylalanine. The synthesized standard peptide fragment was subject to a purity examination by reverse phase HPLC, and the result was 99.2%. The synthesized standard peptide fragments were dissolved in water containing 0.1% trifluoroacetic acid to formulate a solution with a concentration of 0.1 mg/g. To 100 mL of the standard peptide fragment solution was added .sup.13C isotope-labeled phenylalanine and proline with a concentration of 0.01 mg/mL, and the mixture was subject to centrifugal concentration or nitrogen blowing. To the mixture was added 500 ?L of concentrated hydrochloric acid with a concentration of 6 mol/L, and sealed while passing nitrogen for protection. The mixture was hydrolyzed in an oven at 110? C. for 60 hours. After hydrolysis, taking the national reference material of mixed amino acid solution as standard, the amino acid content in the hydrolysate was measured by IDMS, and the purity of the standard peptide fragments was calculated as 0.843 g/g according to the sequence of the standard peptide fragment.
[0243] 5 nCOV N protein reference materials were randomly taken. 100 ?L was taken from each sample, calculated as 0.1 mg/g, and an equivalent mole of isotope-labeled peptide fragment was added. 100 ?g trypsin (dissolved in 200 ?L of ammonium bicarbonate with a concentration of 0.1 mol/L, pH=8.0, containing 10% acetonitrile) was added and digested at 37? C. for 36 hours to give a digested sample. According to the concentration of the digested peptide fragment in the sample, a mixture of the standard peptide fragment and the isotope-labeled peptide segment with similar concentration was formulated as standard solution.
[0244] After digestion, both the digested sample and the standard solution were analyzed by HPLC-tandem mass spectrometry, using an aqueous solution containing 0.1% formic acid as mobile phase A, and an acetonitrile solution containing 0.1% formic acid as mobile phase B. The injection volume was (3?20) ?L, and a 2.1 mm?150 mm C18 reversed-phase chromatography column was used for isolation at a flow rate of 0.2 mL/min. Within 120 min, the gradient of mobile phase linearly changed from 100% mobile phase A to 100% mobile phase B, to achieve the isolation of the digested peptide fragments. A triple tandem quadrupole mass spectrometer is used for detection to harvest mass spectrometry signals from the standard peptide fragment ITFGGPSDSTGSNQNGER and the corresponding isotope-labeled peptide fragments, respectively, by using a positive ion mode and a multiple reaction monitoring (MRM) scanning mode. Each sample was analyzed in triplicate. The concentrations of various standard peptide fragments in the digested samples were calculated according to the concentrations of the standard peptide fragments and the isotope-labeled peptide fragments in the standard solution and their mass respectively added, as well as the peak areas of the standard peptide fragments and isotope-labeled peptide fragments in the extraction chromatogram of the digested samples, the peak areas of the standard peptide fragments and isotope-labeled peptide fragments in the extraction chromatogram of the standard solution, the sample mass, and the concentration and mass of the isotope-labeled peptide fragment added in the sample, and the concentration of N protein in the sample was calculated according to the molecular weight of the standard peptide fragments and N protein according to the formulas below:
[0245] In the formula, R.sub.STD is a ratio of the mass of the standard peptide fragment to the mass of the isotope-labeled peptide fragment in the standard solution, c.sub.pep is a concentration of the standard peptide fragment, M.sub.pep is a mass of the standard peptide fragment added, c.sub.pep is a concentration of the isotope-labeled peptide fragment, M.sub.pep is a mass of the isotope-labeled peptide fragment added, c.sub.s is a concentration of the standard peptide fragment in the digested sample, A.sub.s is a ratio of peak area of the standard peptide fragment to the isotope-labeled peptide fragment in the sample, c.sub.s is a concentration of the isotope-labeled peptide fragment added in the sample, M.sub.s is a mass of the isotope-labeled peptide fragment added in the sample, A.sub.STD is a ratio of peak area of the standard peptide fragment to the isotope-labeled peptide fragment in the standard solution, M.sub.s is a sample mass, c.sub.N is a concentration of N protein in the sample, MW.sub.s is a molecular weight of the standard peptide fragment, and MW.sub.N is a molecular weight of the N protein.
[0246] The results are shown in Table 6.
TABLE-US-00009 TABLE 6 Test results of the N protein content by peptide fragment analysis-based HPLC-IDMS, mg/g 1 2 3 Mean Sample 1 0.097 0.100 0.105 0.1007 Sample 2 0.092 0.098 0.099 0.0963 Sample 3 0.101 0.089 0.105 0.0983 Sample 4 0.109 0.090 0.110 0.1030 Sample 5 0.116 0.112 0.111 0.1130 Grand 0.1027 Mean
[0247] The obtained test results were subject to the K-S single-sample normality test, the Grabs method and/or Dixon method were used for outlier test, and all the samples passed the above statistical test. Thus, the arithmetic mean value of all the results, 0.1027 mg/g, was taken as the standard value of the test results of the peptide fragment analysis-based HPLC-IDMS method.
(VI). Determination and Statistical Test of Standard Value of nCOV N Protein Reference Material
[0248] The at least 15 data of N protein content obtained by the amino acid analysis-based HPLC-IDMS in step (n) and the at least 15 data of N protein content obtained by the peptide fragment analysis-based HPLC-IDMS in step (o) were subject to independent-samples t-test; if the |t| value calculated from Formula (24) is less than t.sub.?,(n.sub.
[0249] In Formula (24): [0250] mean number of the first sample, that is, a standard value of the test results by the amino acid analysis-based HPLC-IDMS; [0251]
mean number of the second sample, that is, a standard value of the test results by the peptide fragment analysis-based HPLC-IDMS; [0252] s.sub.1.sup.2variance of the first sample,
[0256] The data in Tables 5 and 6 were tested for consistency of the mean value, and the calculated |t|=0.0106 is less than t.sub.?,(n.sub.
(VII). Assessment of Uncertainty of the Certified Results of the Standard Value of the nCOV N Protein Reference Material
[0257] The uncertainty U of the certified results of the nCOV N protein reference material is derived from an uncertainty u.sub.char introduced during the certification, an uncertainty u.sub.bb introduced by the uniformity of reference material, an uncertainty u.sub.sts introduced by short-term stability and an uncertainty u.sub.lts introduced by long-term stability, which are combined according to Formula (25)
[0258] In the formula, k is a coverage factor, typically k=2;
[0259] Where, u.sub.char includes an uncertainty u.sub.char,HPLC-AAA-IDMS from the amino acid analysis-based HPLC-IDMS and an uncertainty u.sub.char,HPLC-PEP-IDMS from the peptide fragment analysis-based HPLC-IDMS; and [0260] u.sub.char,HPLC-AAA-IDMS includes an uncertainty component u.sub.char,HPLC-AAA-IDMS,A (Formula 26) introduced by the repeatability of the test results of the HPLC-IDMS, as well as an uncertainty component u.sub.char,HPLC-AAA-IDMS,wi (Formula 27) introduced by multiple balance weighing, and an uncertainty component u.sub.char,HPLC-AAA-IDMS,P (Formula 28) introduced by the amino acid reference material, which are combined according to Formula (29).
[0261] In Formula (26), s is a standard deviation, i.e.,
x.sub.i?
[0262] In Formula (27), MPE is a maximum permissible error of balance verification certificate.
[0263] In Formula (28), U is an uncertainty in the certificate of national amino acid reference material, k is a coverage factor, typically k=2.
[0264] In Formula (29), q is a number of balance weighing, c.sub.i is a sensitivity coefficient at the i.sup.th weighing, and c.sub.p is a sensitivity coefficient of the purity of the reference material which is calculated according to JJF1059.1-2012, the Evaluation and Expression of Uncertainty in Measurement.
[0265] u.sub.char,HPLC-PEP-IDMS of the test results of the peptide fragment analysis-based HPLC-IDMS method is calculated according to Formula (33):
[0266] In Formula (33), q is a number of balance weighing, c.sub.i is a sensitivity coefficient at the i.sup.th weighing, c.sub.p is a sensitivity coefficient of the purity of the reference material, and the calculation formulas for u.sub.char,HPLC-PEP-IDMS,A, u.sub.char,HPLC-PEP-IDMS,wi and u.sub.char,HPLC-PEP-IDMS,P are the same as those in the HPLC-IDMS.
[0267] u.sub.char is calculated according to Formula (34):
[0269] The uncertainty introduced by short-term stability and the uncertainty introduced by long-term stability of the reference material are calculated according to the following formulas:
[0273] In the formula, x is the certified value, U is an expanded uncertainty of the certified value; it is obtained that the expanded uncertainty of the certified value of the reference material U=0.011 mg/g, and thus the certified result of the nCOV N protein reference material can be represented as (0.102?0.011) mg/g; finally, the certified results of the uniformity, stability, and N protein content of the prepared nCOV N protein reference material are obtained.
[0274] The foregoing is an explanation of the present invention, rather than a limitation to the present invention. The scope of the present invention is defined by the claims, and the present invention can be modified in any form without departing from the spirit of the present invention.