NOVEL APPROACH FOR INCREASING CONTRACTILITY IN PATIENTS WITH SYSTOLIC HEART FAILURE
20220397567 · 2022-12-15
Inventors
- Steven O. MARX (New york, NY, US)
- Alexander KUSHNIR (New York, NY, US)
- Sergey ZAKHAROV (New York, NY, US)
- Alexander KATCHMAN (New York, NY, US)
- Steven P. GYGI (New York, NY, US)
- Marian KALOCSAY (New York, NY, US)
- Manu BEN-JOHNY (New York, NY, US)
- Henry M. COLECRAFT (New York, NY, US)
- Guoxia LIU (New York, NY, US)
Cpc classification
International classification
Abstract
The method for increasing contractility in patients with systolic heart failure involves screening for candidate small molecules which block the interaction between Rad and the plasma membrane and/or block the interaction between Rad and the Ca.sub.V1.2/Ca.sub.Vβ2 complex, or between Rad and Ca.sub.Vβ2, in order to increase cardiac contractility. A method for preventing calcium overload and arrhythmias in heart disease involves preventing the dissociation of Rad and the Ca.sub.V1.2/Ca.sub.Vβ2 complex, or between Rad and Ca.sub.Vβ2, during beta-adrenergic system activation. Additionally, a method of screening for drugs that block interaction between an RGK GTPase protein and a β-subunit of the calcium channel is provided. A suitable technique, such as fluorescence resonance energy transfer (FRET), may be used to assess blocking of the interaction between the RGK GTPase protein and the β-subunit of the calcium channel for the treatment of heart disease, pain, diabetes, skeletal muscle disorders and/or central nervous system (CNS) disorders.
Claims
1. A method of screening for drugs that increase α.sub.1C calcium current in cardiomyocytes and increase cardiac contractility, comprising the step of screening a molecular library for one or more candidate molecules which block interaction between Rad and a cardiomyocyte membrane.
2. A method of screening for drugs that increase α.sub.1C calcium current in cardiomyocytes and increase cardiac contractility, comprising the step of screening a molecular library for one or more candidate molecules which block interaction between Rad and a Ca.sub.V1.2/Ca.sub.Vβ2 complex.
3. A method of screening for drugs that increase α.sub.1C calcium current in cardiomyocytes and increase cardiac contractility, comprising the steps of: generating a stable cell line that expresses α.sub.1C and β.sub.2; transiently transfecting the stable cell line with Rad and a light sensitive ion channel; adding a calcium sensitive fluorescent dye to the stable cell line; exposing the stable cell line to light to depolarize each of the cells and activate the α.sub.1C calcium channels; assessing an amplitude of calcium current by measuring an intensity of calcium dye fluorescence.
4. The method of screening for drugs that increase α.sub.1C calcium current in cardiomyocytes and increase cardiac contractility as recited in claim 3, wherein the method of screening for drugs that increase α.sub.1C calcium current in cardiomyocytes and increase cardiac contractility is performed in the absence of a screening compound.
5. The method of screening for drugs that increase α.sub.1C calcium current in cardiomyocytes and increase cardiac contractility as recited in claim 3, wherein the method of screening for drugs that increase α.sub.1C calcium current in cardiomyocytes and increase cardiac contractility is performed in the presence of a screening compound.
6. The method of screening for drugs that increase α.sub.1C calcium current in cardiomyocytes and increase cardiac contractility as recited in claim 5, further comprising the step of determining that the screening compound increases α.sub.1C calcium current in cardiomyocytes and increases cardiac contractility if the intensity of calcium dye fluorescence is above a threshold value.
7. A method of screening for drugs that block interaction between an RGK GTPase protein and a β-subunit of a calcium channel, comprising the steps of: attaching a first fluorophore to an RGK GTPase protein; attaching a second fluorophore to a β-subunit of a calcium channel; exciting one of the first and second fluorophores; and measuring fluorescence resonance energy transfer (FRET) efficiency to determine interaction between the RGK GTPase protein and the β-subunit of a calcium channel.
8. The method of screening for drugs that block interaction between an RGK GTPase protein and a β-subunit of a calcium channel as recited in claim 7, wherein the RGK GTPase protein is selected from the group consisting of Rad, Rem, Rem2, and Kir/Gem.
9. The method of screening for drugs that block interaction between an RGK GTPase protein and a β-subunit of a calcium channel as recited in claim 8, wherein the β-subunit is selected from the group consisting of CACNB1, CACNB2, CACNB3, and CACNB4.
10. The method of screening for drugs that block interaction between an RGK GTPase protein and a β-subunit of a calcium channel as recited in claim 9, wherein the calcium channel is selected from the group consisting of CACNA1S, CACNA1C, CACNA1D, CACNA1F, CACNA1A, CACNA1B, CACNA1E, CACNA1 G, CACNA1H, and CACNA1I.
11. A method of screening for drugs that increase α.sub.1C calcium current in cardiomyocytes and increase cardiac contractility, comprising the step of screening a molecular library for one or more candidate molecules which block interaction between Rad and a Ca.sub.V1.2/Ca.sub.Vβ2 complex and between Rad and Ca.sub.Vβ2.
12. A method of screening for drugs that increase α.sub.1C calcium current in cardiomyocytes and increase cardiac contractility, comprising the step of screening a molecular library for one or more candidate molecules which block interaction between Rad and Ca.sub.Vβ2.
13. A method of screening for drugs that enhance interaction between an RGK GTPase protein and a β-subunit of a calcium channel to decrease calcium current, reduce calcium overload and reduce arrhythmias, comprising the steps of: attaching a first fluorophore to an RGK GTPase protein; attaching a second fluorophore to a β-subunit of a calcium channel; expressing the RGK GTPase protein and the β-subunit of the calcium channel in a cell line; expressing a catalytic subunit of PKA in the cell line; exciting one of the first and second fluorophores; and measuring fluorescence resonance energy transfer (FRET) efficiency to determine interaction between the RGK GTPase protein and the β-subunit of the calcium channel.
14. A method of screening for drugs that block interaction between an RGK GTPase protein and a β-subunit of a calcium channel, comprising the steps of: attaching a first fluorophore to an RGK GTPase protein; attaching a second fluorophore to an integral membrane bound protein; exciting one of the first and second fluorophores; and measuring fluorescence resonance energy transfer (FRET) efficiency to determine interaction between the RGK GTPase protein and the integral membrane bound protein.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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[0136] Similar reference characters denote corresponding features consistently throughout the attached drawings.
BEST MODE(S)
[0137] As discussed above, a great deal of research has been performed to define the molecular mechanisms of β-adrenergic regulation of Ca.sub.V1.2 to provide tools for the development of targeted therapies. Such research is described, for example, in pending U.S. patent application Ser. No. 16/228,433, filed on Dec. 20, 2018, which is hereby incorporated by reference in its entirety. It has been further found that PKA phosphorylates Rad, and that when Rad is released from Ca.sub.Vβ2 and/or the plasma membrane, and/or somewhere else on the Ca.sub.V1.2/Ca.sub.Vβ2 complex. As noted above, references to, for example the interaction between Rad and the Ca.sub.V1.2/Ca.sub.Vβ2 complex and/or Ca.sub.Vβ2, apply equally to any other Ca.sub.V/Ca.sub.Vβ complex and/or Ca.sub.V(3.
[0138] This results in decreased Cav1.2 calcium channel inhibition, resulting in increased calcium influx and increased contractility. Rad is a member of the RGK family of GTP-binding proteins, is an inhibitor of voltage-gated Ca.sup.2+ channels and is also a PKA target. Thus, candidate small molecule drugs should block the interaction between Rad and the cardiomyocyte membrane, and/or block the interaction between Rad and Ca.sub.Vβ2, and/or otherwise block the interaction between Rad and the Ca.sub.V1.2/Ca.sub.Vβ2 complex, in order to increase cardiac contractility.
[0139]
[0140] Preliminary research involving mass spectrometry of the Ca.sub.V1.2 interactome in adult cardiomyocytes has been performed. To identify new candidate regulators, transgenic (TG) mice were created with doxycycline-inducible expression of ascorbate-peroxidase (APEX2) conjugated to α.sub.1C or β.sub.2, enabling in situ biotin-labeling and subsequent identification of Ca.sub.V1.2 near-neighbors by mass spectrometry (MS). Using the α.sub.1C-APEX2 and β.sub.2b-APEX2 transgenic (TG) mice, 124 proteins were identified with a greater than three-fold increase of normalized spectral counts in the biotinylated samples. Eighty proteins were present in both atria and ventricle datasets. Additional filtering was performed by eliminating proteins such as the Na.sup.+—Ca.sup.2+ exchanger and RyR2, as well as numerous kinases, phosphatases and their regulatory subunits, since it was already known that protein kinase A (PKA), PP1 and PP2A regulate Ca.sub.V1.2. This left 67 candidates.
[0141] The mass spectrometry was performed to identify whether the neighborhood and phosphorylation around Ca.sub.V1.2 changes in response to perturbations such as β-adrenergic stimulation. Ca.sub.V1.2-APEX2-expressing cardiomyocytes were labeled in the absence or presence of isoproterenol. Biotinylated proteins were enriched by denaturing streptavidin affinity purification, digested into tryptic peptides, labeled with isobaric tandem mass tags (TMT), fractionated by alkaline reversed phase chromatography, and analyzed by triple stage mass spectrometry (TMT SPS MS.sup.3). Quantification by SPS MS.sup.3, rather than applying conventional tandem mass spectrometry (MS.sup.2), has the advantage of reducing signal ratio distortion and enhancing the accuracy of peptide (and, by inference, protein) quantification. Data were collected by an SPS MS.sup.3 TMT method using Orbitrap Fusion Lumos mass spectrometers coupled to a Proxeon EASY-nLC 1200 liquid chromatography (LC) system. Peptides were searched using SEQUEST-based in-house software against a mouse proteome database with a target decoy database strategy. Quantitative information on peptides was derived from MS.sup.3 scans. A modified version of the Ascore algorithm was used to quantify the confidence assignment of phosphorylation sites.
[0142] Of the proteins identified by proximity-labeling in the α.sub.1C-APEX2 and β.sub.2b-APEX mice, >85% of the proteins were present in both groups using TMT SPS MS.sup.3. All 67 potential candidates were included in the datasets acquired by TMT SPS MS.sup.3. To be fully inclusive, all proteins identified by both α.sub.1C-APEX2 and β.sub.2b-APEX2 screens were included, regardless of fold-biotinylation or relative quantification. It was found that 213 proteins in the full ventricular datasets for α.sub.1C-APEX and β.sub.2b-APEX mice (N>10 replicates) were amongst the 353 proteins previously identified to be significantly phosphorylated in mice upon β.sub.1-adrenergic stimulation. Excluding ion channels, receptors and pumps (e.g. Cacna1c, Cacnb2, Ryr2, Kcnq1, Scn5a, PLN, PLM), kinases and phosphatases, translational machinery, mitochondrial proteins, and proteins already excluded from being potential candidates, 90 candidates remain. Filtering by including only those proteins identified in the atrial screen resulted in a remaining 56 potential candidates, which were considered to be part of the “tier 1” high-priority group. From a dataset of 8,518 phospho-sites of 4,246 proteins, 401 proteins were identified that had phosphorylated Ser or Thr within a consensus PKA phosphorylation site (R/KXS/T, R/KXXS/T, R/KXXXS/T). Cross-referencing these 401 proteins with the atrial and ventricular α.sub.1C-APEX2 and β.sub.2b-APEX2 datasets yielded 138 proteins, of which 44 were excluded based upon the above criteria. Thus, 55 more proteins were added to the tier 1 high-priority group, including Rrad, a known inhibitor of Ca.sub.V1.2. Groups of proteins were selected from this list for the initial studies based upon known t-tubule/membrane localization, and experiments were designed to pare the list.
[0143] In addition to the candidate proteins being protein kinase A (PKA) phosphorylation targets, a determination is also made as to whether the interactome and the “neighborhood” changes after β-adrenergic stimulation. Thus, proximity-labeling in cardiomyocytes treated with isoproterenol was compared to untreated controls. Cardiomyocytes were enzymatically isolated from two α.sub.1C-APEX2 mice, mixed, loaded with biotin-phenol and exposed to isoproterenol or vehicle for 10 minutes at room temperature. For the final minute, labeling was initiated with H.sub.2O.sub.2. This was repeated for myocytes from 4 additional sets of mice (total: 5 sets of biological replicates; 10 mice). Biotinylated proteins were purified and detected using TMT SPS MS.sup.3. The isobaric labeling allowed simultaneous quantification of all proteins measured rather than just a select subset, thus enabling statistical analysis of relative enrichment between vehicle and isoproterenol treatment. Candidates in the upper left quadrant have reduced labeling (likely indicating reduced proximity) after isoproterenol and candidates in the upper right quadrant have increased labeling (likely indicating increased proximity) after isoproterenol. Mitochondrial/nuclear proteins were removed from the analysis. The labeling of the catalytic subunit of PKA (Prkaca) increased. Other significant changes were the ˜50% decrease in Rad (Rrad) (P=6.9×10.sup.4) and ˜57% reduction in Sorbin and SH3 domain containing 2 (Arg/Abl-Interacting Protein 2; Sorbs2) (P=0.004). Similar experiments for β.sub.2-APEX, and atrial myocytes for both α.sub.1C-APEX2 and β.sub.2-APEX2 are also contemplated, and more “hits” are anticipated as the sample size increases. It is important to note, however, that changes in proximity do not necessarily imply changes in interactions with Ca.sub.V1.2.
[0144] Mass spectrometry identified phosphorylated proteins from biotinylated, streptavidin-purified samples from APEX2 mice, and from whole hearts of wild-type (WT) mice treated with isoproterenol. Both Rad and Sorb2 are phosphorylated on multiple residues. Rad, a member of the RGK family of GTP-binding proteins, is an inhibitor of voltage-gated Ca.sup.2+ channels and is also a PKA target. Although RGK proteins do not contain canonical lipid modification motifs, they are enriched at the plasma membrane, although some RGK proteins are also localized to the nucleus, cytosol and actin/microtubule network. To further explore whether β-agonists can alter membrane-localization of Rad relative, rat cardiomyocytes were infected with adenoviruses harboring cyan fluorescent protein (CFP)-tagged Rad. The fluorescence of CFP-Rad at the membrane and in the cytosol was quantified before and after isoproterenol. The number of exposures were limited to avoid photo-bleaching. It was found that isoproterenol decreased Rad localized at the membrane by 21%±3%, whereas cytosolic Rad increased by 20%±5% (P<0.0001, as shown in
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[0146] Increased cardiac contractility during fight-or-flight response is caused by (3-adrenergic augmentation of Ca.sub.V1.2 channels. In transgenic murine hearts expressing fully PKA phosphorylation-site-deficient mutant Ca.sub.V1.2 α.sub.1C and β subunits, this regulation persists, implying involvement of extra-channel factors. Here, the inventors identified the mechanism by which β-adrenergic agonists stimulate voltage-gated Ca.sup.2+ channels. The inventors expressed ascorbate-peroxidase-conjugated-α.sub.1C or β.sub.2B subunits in mouse hearts and used multiplexed, quantitative proteomics to track hundreds of proteins in proximity of Ca.sub.V1.2. The inventors observed that Rad is enriched in the Ca.sub.V1.2 micro-environment but is depleted during β-adrenergic stimulation. The inventors found that PKA-catalyzed phosphorylation of Rad relieves its inhibition of Ca.sub.V1.2 observed as an increase in channel open probability that depended on specific Ser residues in Rad. Expression of Rad or Rem, another member of this small G-protein family, also imparted PKA-induced stimulation of Ca.sub.V1.3 and Ca.sub.V2.2. These results reveal an evolutionary conserved mechanism that confers adrenergic-modulation to voltage-gated Ca.sup.2+ channels.
[0147] The positive inotropic effect of β-adrenergic agonists on the heart is a classical physiological phenomenon universally experienced during excitement, exercise, fight or flight. This effect is mediated by β-adrenergic activation of protein kinase A (PKA) which leads to increased Ca.sup.2+ influx through L-type Ca.sub.V1.2 channels in cardiomyocytes. The molecular mechanism of PKA-induced up-regulation of Ca.sub.V1.2 current (I.sub.Ca,L) (
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[0149] Phosphorylation of core Ca.sub.V1.2 channel subunits is not required for acute β-adrenergic regulation. The inventors developed a transgenic approach that enables doxycycline-inducible expression in mice of FLAG-epitope tagged, dihydropyridine (DHP)-resistant Ca.sub.V1.2 channels (
[0150] All 37 conserved and non-conserved Ser and Thr within 28 PKA-consensus phosphorylation sites of human β.sub.2B were mutated to Ala (construct termed “28-mutant β.sub.2B”; see
[0151] Finally, the inventors crossed the 35-mutant α.sub.1C transgenic mice with the 28-mutant β.sub.2B transgenic mice. Feeding these mice doxycycline overnight induced robust expression of both 35-mutant α.sub.1C and GFP-tagged 28-mutant β.sub.2B in the heart, and anti-FLAG antibody immunoprecipitation indicated GFP-tagged 28-mutant β.sub.2B subunits dominate in the 35-mutant α.sub.1C complex (
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[0153] A peroxidase-catalyzed proximity labeling system in cardiomyocytes and intact hearts reveals the Ca.sub.V1.2 proteome subdomain. Given the foregoing results, it seemed likely that β-adrenergic stimulation of Ca.sup.2+ current in the heart involves recruitment of an activator protein to or loss of an inhibitory protein from the Ca.sub.V1.2 macromolecular complex. Accordingly, the inventors adapted for application to cardiomyocytes an enzyme-catalyzed proximity labeling method originally developed for the identification of the mitochondrial proteome. The inventors generated transgenic mice with doxycycline-inducible, cardiomyocyte-specific expression of V5-tagged-APEX2-DHP-resistant-α.sub.1C or V5-tagged-APEX2-β.sub.2B proteins. These resulted in in situ biotin-labeling and subsequent identification by mass spectrometry of Ca.sub.V1.2 near-neighbors. Importantly, fusing APEX2 to α.sub.1C and β.sub.2B did not affect Ca.sub.V1.2 subcellular localization and function in cardiomyocytes because: 1) APEX2-conjugated α.sub.1C subunits inserted in the membrane and were appropriately activated by voltage (
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[0155] The inventors initiated proximity labeling in either isolated ventricular cardiomyocytes or Langendorff-perfused whole hearts by incubating or perfusing with a solution containing biotin-phenol (biotin-tyramide) followed by exposure to H.sub.2O.sub.2. The short half-life (1-2 msec) of enzyme-generated biotin-phenoxyl radicals ensures that labeling of proteins occurs only within ˜20 nm of the enzyme. The distance between the sarcoplasmic reticulum membrane and the sarcolemma at the dyad is 12-15 nm. Western blots of extracted proteins probed with streptavidin-HRP confirmed robust biotinylation of proteins in cardiomyocytes isolated from both α.sub.1C-APEX2 and β.sub.2B-APEX2 transgenic mice (
[0156] The inventors extracted and isolated the biotinylated proteins by affinity purification on streptavidin beads of whole-cell lysates. Purified proteins were analyzed either by Western blotting (
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[0158] With regard to isoproterenol-induced changes in the Ca.sub.V1.2 neighbors, recently, APEX-labeling, combined with either multiplexed quantitative mass spectrometry or quantitative proteomics using a system of spatial references and bystander ratio calculations, was utilized to analyze ligand-induced changes in the local environment of G-protein-coupled receptors. Similarly, by identifying proteins the proximity-labeling of which change in response to β-adrenergic stimulation, the inventors reasoned that the hypothesized unknown PKA target involved in up-regulating Ca.sub.V1.2 current could be identified.
[0159] The nisoldipine-resistant Ca.sup.2+ currents from α.sub.1C-APEX2 mice and the Ca.sub.V1.2 current from β.sub.2B-APEX2 mice are stimulated by isoproterenol (
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[0164] Rad is a potential PKA target. It is a member of the Rad- and Gem/Kir Ras-related (RGK) family of GTP-binding proteins, known for their capacity to inhibit all high-voltage-activated Ca.sup.2+ channels. Recently, a Rem2 variant was identified as a genetic modifier in long QT syndrome 2, and a Rad variant was linked to Brugada syndrome. Moreover, Rad-knockout mice display an increased maximum Ca.sup.2+ current, and the Ca.sup.2+ channels activate at lower voltages, mimicking the effects of β-adrenergic receptor stimulation. Other studies, however, led to expectations that Rad is not directly involved in adrenergic regulation of Ca.sub.V1.2 since adenoviral-induced over-expression of Rad or Rem in cultured cardiomyocytes ablated Ca.sub.V1.2 and attenuated adrenergic regulation. Our proximity labeling results elevated Rad as the leading candidate for the critical missing link that enables PKA regulation of Ca.sub.V1.2.
[0165] PKA regulation of Ca.sub.V1.2 requires phosphorylation of Rad. The robust heterologous reconstitution of PKA regulation of L-type Ca.sup.2+ currents has been long pursued as a crucial step. Previous attempts have been unsuccessful or irreproducible. The inventors now find that Rad was the missing ingredient. To prove this experimentally in vivo, the inventors co-expressed Rad with α.sub.1C and β.sub.2B subunits in HEK293T cells, adding 3- to 6-fold less Rad than Ca.sub.V1.2 subunits. Excess Rad could eliminate Ca.sup.2+ current. To preserve the normal intracellular milieu and signaling cascades, the inventors used perforated, whole-cell patch clamp to assess function. The inventors used Ba.sup.2+ as the charge carrier to minimize inactivation and depolarized the membrane potential with either a voltage step to 0 mV or a voltage ramp from −60 mV to +60 mV. Under these conditions, run-down of the Ba.sup.2+ current was minimal. In control HEK293T cells transfected with only α.sub.1C+β.sub.2B, superfusion of forskolin over 1-3 minutes had no impact on Ba.sup.2+ current (
[0166] In HEK cells expressing 35-mutant α.sub.1C+28-mutant β.sub.2B+Rad, applying forskolin increased G.sub.max by as much as 3.1-fold and by a mean of 1.9-fold, and shifted the V.sub.50 for activation by −3.3 mV (
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[0168] The inventors used low noise single-channel recordings to determine the mechanism of PKA/Rad modulation of Ca.sub.V1.2, and a slow voltage ramp was used to elicit stochastic channel opening that reflect near-steady-state open probability (P.sub.o) at each voltage. In the exemplary records, channels closures correspond to zero-current portions (horizontal gray lines) and openings correspond to downward deflections to the open level (slanted gray lines). In the absence of Rad, sweeps with no openings or blank sweeps are quite rare (10%), while most sweeps exhibit either intermediate or high levels of openings, consistent with channels switching between low and high activity modes (
[0169] Having established that expression of Rad is required for PKA-mediated activation of Ca.sub.V1.2 current in HEK cells, the inventors then asked whether Rad is the critical PKA-target. Using both manual sequence analyses and several web-based PKA phosphorylation prediction tools, the inventors identified 14 consensus PKA phosphorylation sites in Rad (residues labeled purple in
[0170] In lysates from forskolin-stimulated HEK cells transfected with GFP-Rad, the inventors found, using mass spectrometry, that Ser.sup.25, Ser.sup.38 and Ser.sup.300 were phosphorylated (
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[0175] A C-terminal 32 amino acids, polybasic region of Rad is involved in plasma membrane targeting via binding to anionic phospholipids such as PIP2. Deletion of these 32 residues prevents Rad-mediated inhibition of Ca.sup.2+ channel function. Deletion of the C-terminal domain of Rem, a homologous RGK GTPase, also greatly reduced binding of Rem to the Ca.sub.V β subunit. The inventors reasoned that phosphorylation of the two serine residues, Ser.sup.272 and Ser.sup.300, within the C-terminal polybasic membrane region can tune the Rad-mediated inhibition of Ca.sup.2+ channels, potentially by changing the electrostatic interactions with anionic phospholipids. Consistent with this hypothesis, the inventors found that alanine substitutions at Ser.sup.272 and Ser.sup.300 (2-SA mutant) in the C-terminus prevented both the forskolin-induced increase in current amplitude and the hyperpolarizing shift in the I-V curve (
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[0178] Rad binding to 0 is required for PKA regulation of Ca.sub.V1.2 channels. Rad can inhibit Ca.sub.V1.2 via β-dependent and β-independent (α.sub.1C-dependent) mechanisms. Alanine substitutions of Rad at residues R208 and L235 (
[0179] The inventors utilized flow-cytometric Förster resonance energy transfer (FRET) 2-hybrid assay to probe potential PKA-mediated changes in the binding of β.sub.2B subunit and WT Rad (
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[0181] The FRET-based method for assessing Rad/β binding demonstrates that Rad binds to β.sub.3 and β.sub.4, and that this can be reversed by PKA phosphorylation of Rad dependent. Cerulean (Cer)-tagged β.sub.3 (
[0182] Rad and Rem confer PKA regulation to Ca.sub.V1.3 and Ca.sub.V2.2 channels. In adrenal chromaffin cells and the sinus node cells of the heart, L-type Ca.sub.V1.3 channels are robustly stimulated by PKA. In control HEK293T cells transfected with only Ca.sub.V1.3 α.sub.1D+β2B, superfusion of forskolin over 1-3 minutes had no impact on Ba.sup.2+ current (
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[0185] β.sub.2 binding to Rad was demonstrated using a novel FRET-based assay. Cerulean (Cer)-tagged β.sub.2B is co-expressed in HEK cells with either N-terminal Venus (Ven)-tagged WT (
[0186] N-type Ca.sup.2+ channels (Ca.sub.V2.2) are widely expressed, play an essential role in neurotransmitter release, and are targets for the development of drugs to relieve chronic pain. The inventors expressed the Ca.sub.V2.2 α.sub.1B subunit with β.sub.2B and Rad in HEK cells. As with Ca.sub.V1.2 and Ca.sub.V1.3, forskolin increased G.sub.max through Ca.sub.V2.2 when co-expressed with Rad by a mean of 2.2-fold and shifted the V.sub.50 for activation by −3.7 mV (
[0187] Multiple-alignment analysis of mouse Rad and other species shows conservation of the four phosphorylation sites, suggesting that this regulatory mechanism is conserved (
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[0189] PKA-induced stimulation of the Ca.sub.V1.2 Ca.sup.2+ current is the prototypic form of Ca.sup.2+ channel modulation. Yet decades of research had failed to identify the molecular mechanisms responsible. It was supposed that the core α.sub.1C and β.sub.2B subunits contain the PKA target sites required for acute β-adrenergic agonist-induced stimulation of Ca.sub.V1.2, but as the inventors demonstrate here they do not (
[0190] Short stretches of basic and hydrophobic (BH) amino acids are known to interact with the membrane and phosphorylation of residues within these alter the electrostatic character, thereby reducing membrane affinity. The phospho-regulated BH (PRBH) motif of Rad is an essential switch that couples the evolutionary-conserved fight or flight pathway to enhanced Ca.sup.2+ current (
[0191] Whereas phosphorylation of Ser.sup.1928 is definitively not required for β-adrenergic regulation of Ca.sub.V1.2 in the heart, alanine substitution of Ser.sup.1928 prevents β-adrenergic stimulation of Ca.sup.2+ channels in hippocampal neurons and hyperglycemia-induced stimulation of Ca.sup.2+ currents in arterial smooth muscle cells. Perhaps the components of the Ca.sub.V1.2 channel macromolecular complex differ across tissues. Phosphorylation on the α.sub.1C subunit may also affect the trafficking and clustering in neurons and cardiomyocytes.
[0192] Our results indicate that proximity labeling using APEX2 is feasible in heart and combined with multiplexed TMT proteomics can identify a dynamically evolving network of interactions induced by β-adrenergic stimulation. Our findings establish the utility of proximity labeling in animals and provide an important foundation for future studies that will investigate how diseases, such as heart failure, change the proteomic subdomain of the excitation-contraction coupling machinery.
[0193] These findings also identify potential targets and interaction sites for the therapeutic modulation of β-adrenergic regulation of Ca.sup.2+ currents in the heart and other tissues. For instance, disrupting the interaction between Rad and β subunit can be inotropic by increasing Ca.sup.2+ entry in the heart. Conversely, interfering with the α.sub.1C-β interaction, blocking PKA phosphorylation of Rad or potentially enhancing the interaction of Rad with the plasma membrane could attenuate more specifically than β-blockers the sympathetic nervous system activation of cardiac Ca.sup.2+ entry and inotropy.
[0194] In the above, with regard to clone construction and cell culture, all mouse N-terminal-GFP-tagged mouse Rad (accession #XM_006531206) constructs in a pEGFP-C1 vector were generated by gene-synthesis (Gene Universal). The human Ca.sub.V2.2 (pSAD442-1) was a gift from Diane Lipscombe (Addgene plasmid #62574). HEK293T cells were cultured in DMEM with 10% FBS, 1% Pen/Strep, and transfected with 3 μg rabbit α.sub.1C (accession #X15539) or α.sub.1B (for Ca.sub.V2.2 experiments), 3 μg human β.sub.2B (NM-201590.3) and 0.5 μg N-terminal-GFP-tagged mouse Rad using Lipofectamine 2000 (Thermo Fisher Scientific). The media was changed 4-6 hours after transfection. The cells were split onto coverslips coated with attachment factor protein (Gibco). Electrophysiological recordings were carried out at room temperature 24-48 hours after transfection.
[0195] For, animal generation, the Institutional Animal Care and Use Committee at Columbia University approved all animal experiments. The transgenic constructs were generated by fusing rabbit α.sub.1C cDNA or human β.sub.2B cDNA to the modified murine α-myosin heavy chain (MHC) tetracycline-inducible promoter vector (gift of Jeffrey Robbins and Jeffrey Molkentin, University of Cincinnati, Cincinnati, Ohio). A 3× FLAG-epitope was ligated in-frame to the N-terminus of α.sub.1C. The α.sub.1C subunit was engineered to be dihydropyridine (DHP)-insensitive with the substitutions T1066Y and Q1070M. GFP was ligated to the N-terminus of β.sub.2B. The V5 epitope and APEX2 cDNA, created by gene synthesis, were conjugated to the N-terminus of DHP-resistant α.sub.1C and β.sub.2B.
[0196] The 35-α mutant and the 28-β mutant cDNA were generated by site-directed mutagenesis. The optimal PKA phosphorylation motif is a tetrapeptide with Arg at the 2nd and 3rd positions (termed −2 and −3) prior to the phosphorylated Ser or Thr, and a large hydrophobic residue immediately thereafter (R-R-X-S/T-Φ). The requirement for a positive charge is highest for residues at −2 and −3, but can be found for residues as far as position −6 in PKA target sites. Sites with Arg in positions between −4 and −1 are strongly preferred and to a lesser extent this is found for for His or Lys. The inventors identified all potential intracellular PKA phosphorylation sites (
[0197] Transgenic mice with non-targeted insertion of these tetracycline-regulated cDNA were bred with cardiac-specific (α-MHC), doxycycline-regulated, codon-optimized reverse transcriptional trans-activator (rtTA) mice (obtained via the Mutant Mouse Resource and Research Center) to generate double-transgenic mice. For the α.sub.1C-APEX2 and β.sub.2B-APEX2 mice, transgene expression did not require doxycycline due to a low basal binding of rtTA protein to the Tet operator sequences (so-called “leak”). These expression levels result in Ca.sup.2+ current levels similar to naïve conditions in heart. The results presented were consistent across all founder lines and gender, and therefore were pooled.
[0198] With regard to the isolation of adult cardiac myocytes, mice ventricular myocytes were isolated by enzymatic digestion using a Langendorff perfusion apparatus. Cardiomyocytes were isolated from 8-12 week-old non-transgenic and transgenic mice.
[0199] For fractional shortening, freshly isolated myocytes were perfused with a Tyrode's solution containing 1.8 mM CaCl.sub.2. Myocytes were field stimulated at 1-Hz. Nisoldipine (300 nM) dissolved in Tyrode's solution was then superfused. Fractional shortening of sarcomere length was measured using the SarcLen module of Ionoptix. With regard to whole cell patch clamp electrophysiology, isolated cardiomyocytes or HEK cells on glass 8×8 mm coverslips were placed in Bioptechs Delta T Dishes filled with solution containing (in mM): 112 NaCl, 5.4 KCl, 1.7 NaH.sub.2PO4. 1.6 MgCl.sub.2, 20.4 HEPES (pH 7.2), 30 Taurine, 2 DL-Carnitine, 10.3 Creatine, 5.4 Glucose. The petri dishes were mounted on the stage of an inverted microscope and served as a perfusion chamber. After establishing a seal and achieving whole-cell configuration, external solutions were changed by fast local perfusion method.
[0200] For cardiomyocytes, pipette resistance was between 1-3 ma Membrane currents were measured by conventional (ruptured) whole-cell patch-clamp method using a MultiClamp 700B or Axopath200B amplifier and pCLAMP 10.7 software (Molecular Devices). Capacitance transients and series resistance were compensated. Voltage was corrected for liquid junction potential (−10 mV) during analysis. Leak currents were subtracted by a P/4 protocol. The parameters of voltage-dependent activation were obtained using a modified Boltzmann distribution: I(V)=G.sub.max*(V−E.sub.rev)/[1+exp(V−V.sub.50)/V.sub.c)], where I(V) is peak current, G.sub.max is maximal conductance, E.sub.rev is reversal potential, V.sub.50 is the midpoint, and V.sub.c is the slope factor.
[0201] The pipette solution contained was (in mM): 40 CsCI, 80 Cesium Gluconate, 10 BAPTA (1,2-bis(o-aminophenoxy)ethane-N,N,N′,N′-tetraacetic acid), 1 MgCl.sub.2, 4 Mg-ATP, 2 CaCl.sub.2, and 10 HEPES (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid), adjusted to pH 7.2 with CsOH. After the isolated cardiomyocytes were dialyzed and adequately buffered with 10 mM BAPTA in the internal solution, cells were superfused with (in mM): 140 TEA-Cl (Tetraethylammonium chloride), 1.8 CaCl.sub.2, 1 MgCl.sub.2, 10 glucose, and 10 HEPES, adjusted to pH 7.4 with CsOH. To measure peak currents, the cell membrane potential was held at −50 mV and stepped to +0 mV for 350 ms every 10 s. To evaluate the current-voltage (I-V) relationship in cardiomyocytes, the same protocol was repeated with steps between −60 mV to +60 mV in 10 mV increments. Nisoldipine (Santa Cruz) was stored protected from light at −20° C. as 3 mM stock in ethanol. The final dilution of nisoldipine to 300 nM was in the extracellular recording solution immediately prior to the experiment. Isoproterenol (Sigma 15627) and forskolin (Santa Cruz) were prepared daily and diluted in extracellular solution.
[0202] For HEK293T cell experiments involving the forskolin-induced stimulation of Ca.sub.V1.2 and Ca.sub.V2.2 currents, perforated whole-cell patch clamp technique was implemented to minimize current run-down and preserve the intracellular milieu. Amphotericin B (Sigma A9528) was initially dissolved in DMSO (20 mg/ml) and used in the pipette solution at a final concentration of 200 μg/ml. The tip of the pipette was filled with amphotericin-free solution (in mM): 80 Cesium Gluconate, 40 CsCI, 10 HEPES, 10 BAPTA, 1 MgCl.sub.2, 1 Mg-ATP, pH adjusted to 7.2 with CsOH. The pipette was backfilled with (in mM): 125 CsCI, 10 HEPES, 4 CaCl.sub.2, 1 MgCl.sub.2, pH-7.2 with CsOH; containing amphotericin, 200 μg/ml. CaCl.sub.2 (4 mM) was added to the intracellular patch electrode solution to enable the detection of conversion from perforated to ruptured configuration. The external solution contained (in mM): 130 tetraethylammonium methanesulfonate, 10 HEPES, 1 MgCl.sub.2, 10 (with Rad expression) or 2 (without Rad expression) BaCI.sub.2, 5 Glucose, pH adjusted to pH 7.4 with CsOH. For experiments with HEK293T cells, in addition to step protocols, we used a ramp protocol with a 200 ms voltage ramp from −60 mV (or −70 mV for Ca.sub.V1.3) to +60 mV applied every 10 s- to monitor the near-steady-state I-V relationship. All experiments were performed at room temperature, 22±1° C. Cells were selected based on co-transfection of a vector containing GFP in the absence of Rad, and GFP-conjugated Rad for the experiments with Rad transfected. For both cardiomyocytes and HEK293 cells, cells without a stable baseline (potentially due to run-down or run-up) were not studied.
[0203] The voltage steps protocol used in cardiomyocytes studies evaluated I.sub.Ipeak=I.sub.peak (V), which was recalculated in CLAMPFIT to G=G(V) as G=I/(V−E.sub.rev). For HEK cells experiments, the inventors used a ramp protocol (
[0204] With regard to single channel patch clamp electrophysiology, cell-attached single-channel recordings were performed at room temperature. Patch pipettes (5-10 MΩ) were pulled from ultra-thick-walled borosilicate glass (BF200-116-10, Sutter Instruments), and coated with Sylgard. Currents were filtered at 2 kHz. The pipette solution contained (in mM): 140 tetraethylammonium methanesulfonate; 10 HEPES; 40 BaCl.sub.2; at 300 mOsm/L, adjusted with tetraethylammonium methanesulfonate; and pH 7.4 adjusted with tetraethylammonium hydroxide. To maintain the membrane potential at 0 mV, the bath contained (in mM): 132 potassium glutamate; 5 KCl; 5 NaCl; 3 MgCl.sub.2; 2 EGTA (ethylene glycol-bis(β-aminoethyl ether)-N,N,N′,N′-tetraacetic acid); 10 glucose; 20 HEPES; at 300 mOsm/L adjusted with glucose; and pH 7.4 adjusted with NaOH. Cell-attached single-channel currents were measured during 200 ms voltage ramps between −80 to +70 mV (portions between −50 and 40 mV displayed and analyzed). For each patch, the inventors recorded 80-120 sweeps with a repetition interval of 10 seconds.
[0205] For the flow cytometric FRET assay, HEK293 cells (ATCC) CRL1573 were cultured in 12 well plates and transfected with polyethylenimine (PEI) 25 kDa linear polymer (Polysciences #2396602). Briefly, 1.5 pg of Cerulean (Cer) and Venus (Ven)-tagged protein pairs were mixed together in 100 μl of serum-free DMEM media and 6 μl of PEI is added to each sterile tube. FRET experiments were performed 1-day post-transfection. Protein synthesis inhibitor cyclohexamide (100 μM) was added to cells 2-hrs prior to experimentation to halt synthesis of new fluorophores to allow existing fluorophores to fully mature.
[0206] For FRET measurements, the inventors utilized an LSR II (BD Biosciences) flow cytometer equipped with 405 nm, 488 nm, and 633 nm lasers for excitation and 18 different emission channels. Forward and side scatter signals were detected and used to gate for single and healthy cells. For determining FRET efficiency, the inventors measured three distinct fluorescence signals: (1) S.sub.Cer corresponding to cerulean emission is measured through the BV421 channel (excitation, 405 nm; emission, 450/50), (2) S.sub.Ven corresponding to venus emission measured via FITC channel (excitation, 405 nm; dichroic, 505LP; emission, 525/50), and (3) S.sub.FRET corresponding to FRET emission via the BV510 channel (excitation, 405 nm; dichroic, 505LP; emission, 525/50). These raw fluorescence measurements were subsequently used to obtain Ven.sub.direct (venus emission due to direct excitation), Cer.sub.direct (cerulean emission due to direct excitation), and Ven.sub.FRET (venus emission due to FRET excitation). Flow cytometric signals were collected at medium flow rate (2 k-8 k events/sec). Fluorescence data was exported as FCS 3.0 files for further processing and analysis using custom MATLAB functions (MathWorks).
[0207] For each experimental run on the flow cytometer, the inventors performed several control experiments: (1) Background fluorescence level for each fluorescent channel (BG.sub.Cer, BG.sub.Ven, and BG.sub.FRET) was obtained by measuring fluorescence from cells exposed to PEI without any fluorophore containing plasmids. (2) Cells expressing Ven fluorophore alone were utilized to measure spectral crosstalk parameter R.sub.A1, corresponding to bleed-through of Ven fluorescence into the FRET channel. (3) Cells expressing cerulean fluorophore alone were used to measure spectral crosstalk parameter R.sub.D1 and R.sub.D2, corresponding to bleed-through of cerulean fluorescence into FRET and Ven channels respectively. (4) FRET measurements also require determination of instrument-specific calibration parameters g.sub.Ven/g.sub.Cer and f.sub.Ven/f.sub.Cer, corresponding to ratios of fluorescence excitation and emission for Ven to cerulean fluorophores. These parameters also incorporate fluorophore-dependent aspects including, molar extinction (for g) and quantum yield (foil) as well as instrument specific parameters including laser power, attenuation by optical components, as well as photodetection, amplification, digitiziation of fluorescence. For determination of these parameters, the inventors utilized Cer-Ven dimers with four different linker lengths (5, 32, 40, and 228). (5) Coexpression of cerulean and Ven fluorophores provided estimates for concentration-dependent collisional FRET.
[0208] For the above experiments, R.sub.A1˜0.11, R.sub.D1˜2.8, and R.sub.D2˜0.006. The inventors observed only minor day-to-day variation in these measurements. For each cell, spectral cross-talk was subtracted by applying the following matrix operation:
Following spectral unmixing, the inventors obtained g.sub.Ven/g.sub.Cer and f.sub.Ven/f.sub.Cer from data for Cer-Ven dimers by determining the slope and intercept for the following linear relationship:
For typical experiments, g.sub.Ven/g.sub.Cer=0.0194 and f.sub.Ven/f.sub.Cer=2.3441. Having obtained these calibration values, donor-centric FRET efficiencies were computed as:
For Cer-Ven dimers, FRET efficiencies of ˜0.55, 0.38, and 0.05 were obtained for linker lengths 5, 32, and 228 respectively. The relative proportion of Cerulean and Venus fluorophores in each cell was determined as N.sub.Cer=Cer.sub.direct/(1−E.sub.D) and N.sub.Ven=Ven.sub.direct/(g.sub.Ven/g.sub.Cer×f.sub.Ven/f.sub.Cer). To construct FRET 2-hybrid binding curves, the inventors imposed a 1:1 binding isotherm. For each FRET pairs, K.sub.d,EFF and E.sub.D,max and 95%—confidence intervals were obtained by constrained least squares fit.
[0209] For the proximity labeling, isolated ventricular cardiomyocytes were incubated in labeling solution with 0.5 μM biotin-phenol (Iris-biotech) for 30 minutes. During the final 10 minutes of labeling, 1 μM isoproterenol (Sigma 15627) was added. To initiate labeling, H.sub.2O.sub.2 (Sigma H1009) was added to a final concentration of 1 mM for 1 min Exactly 1 minute after H.sub.2O.sub.2 treatment, the cells were washed three times with cold quenching solution containing (in mM) 10 Sodium ascorbate (VWR 95035-692), 5 Trolox (Sigma 238813), and 10 Sodium azide (Sigma S2002). After the cells were harvested by centrifugation, the quenching solution was aspirated and the pellet was flash-frozen and stored at −80° C. until streptavidin pull-down.
[0210] For biotinylation in Langendorff-perfused hearts, mice were injected with 5 mg/kg propranolol-HCl (Sigma PHR1308) to suppress adrenergic stimulation during the isoflurane anesthesia and cardiectomy. Hearts were retrograde perfused with Krebs' solution for 10 minutes prior to addition of biotin-phenol for 15 minutes. During the final 5 minutes, 1 μM Isoproterenol (Sigma 1351005) or vehicle was added to the perfusate. The hearts were then perfused with 1 mM H.sub.2O.sub.2 for 1 minute, followed by 3-minutes of perfusion of quenching solution. Electrocardiograms were monitored throughout the experiment to ensure viability of the preparation and an isoproterenol-induced increase in heart rate.
[0211] The cells or whole heart tissue were lysed with a hand-held tip homogenizer in a solution containing (in mM), 50 Tris (tris(hydroxymethyl)aminomethane), 150 NaCl, 10 EGTA, 10 EDTA, 1% Triton X-100 (v/v), 0.1% SDS (w/v), 10 Sodium ascorbate, 5 Trolox, and 10 Sodium azide, phosphatase inhibitors (Sigma 4906845001), protease inhibitors (Sigma 4693159001), Calpain inhibitor I (Sigma A6185) and Calpain inhibitor II (Sigma A6060). Biotin labeling of the samples was confirmed by Western blot with Streptavidin-HRP (Sigma RABHRP3) and the response to isoproterenol was assessed by immunoblotting with a phospho-phospholamban (Ser16/Thr17) antibody (Cell Signaling #8496).
[0212] With regard to immunoprecipitation and immunoblots, cardiomyocytes were lysed with a hand-held tip homogenizer in a 1% (v/v) Triton X-100 buffer containing (in mM): 50 Tris-HCl (pH7.4) 150 NaCl, 10 EDTA, 10 EGTA and protease inhibitors. The lysates were incubated on ice for 30 minutes, centrifuged at 14 k RPM at 4° C. for 10 minutes and supernatants collected. Proteins were size-separated on SDS-PAGE, transferred to nitrocellulose membranes, and probed with anti-V5 antibody (Fisher R960-25), an anti-α.sub.1C antibody, a custom-made polyclonal anti-13 antibody (epitope: mouse residues 120-138: DSYTSRPSDSDVSLEEDRE), an anti-JPH2 antibody (Pierce), an anti-calmodulin antibody (Millipore Sigma 05-173), an anti-RyR2 antibody, and an anti-K.sub.V1.5 antibody (Alomone, APC-150). Anti-FLAG antibody (Sigma) immunoprecipitations were performed overnight in a lysis buffer consisting of (in mM): 50 Tris-HCl pH 7.4, 150 NaCl, 0.25% Triton X-100 (v/v), 10 EDTA, 10 EGTA, 0.01 Calpain inhibitor I, 0.01 Calpain inhibitor II, and Complete protease inhibitors (1 per 7 ml, Roche). Antibody-protein complexes were collected using protein A conjugated agarose (Amersham) for 2 h, followed by at least 3 washes in lysis buffer. Proteins were size-separated by SDS, transferred to nitrocellulose membranes and probed with HRP-conjugated anti-FLAG (Sigma) antibody, a custom-made anti-13 antibody and HRP-conjugated secondary goat anti-rabbit antibody. Phospholamban phosphorylation was detected with an anti-phospho-PLB antibody (Cell Signaling #8496). Detection of luminescence was performed with a CCD camera (Carestream Imaging).
[0213] For immunofluorescence, isolated cardiomyocytes were first exposed to biotin-phenol and H.sub.2O.sub.2, as described above. After quenching, the cells were fixed for 15 minutes in 4% paraformaldehyde, washed with glycine/PBS (phosphate-buffered saline) twice, treated with PBST (0.1% Triton X-100 (v/v) in PBS) for 5 minutes, and blocked with 3% BSA (w/v) in PBS for 1 hour. Indirect immunofluorescence was performed using a 1:500 anti-V5 antibody (Fisher R960-25) and 1:1000 Alexa594-labeled goat-anti-mouse antibody (Fisher A-11032), and 1:800 streptavidin-Alexa Fluor 488 conjugate (Fisher S32354). Images were acquired using a confocal microscope.
[0214] With regard to the processing of biotinylated proteins for mass spectrometry, proteins were precipitated with Trichloroacetic acid (TCA; Sigma T9159) and then centrifuged at 21,130×g at 4° C. for 10 minutes. The pellet was washed with −20° C. cold acetone (Sigma 650501), vortexed, and centrifuged at 21,130×g at 4° C. for 10 minutes. Following centrifugation, acetone was aspirated and the pellet was acetone-washed again three more times. After the last washing step, the pellet was resuspended in: 8M urea, 100 mM sodium phosphate pH 8, 100 mM NH.sub.4HCO.sub.3, and 1% SDS (w/v) and rotated at room temperature until fully dissolved. Re-suspended proteins were centrifuged at 21,130×g at room temperature for 10 minutes and the cleared supernatant was transferred to a new microcentrifuge tube. To reduce disulfides, 10 mM TCEP-HCl (Thermo Fisher Scientific PG82089) in Milli-Q water titrated to pH 7.5 with NaOH was added. To alkylate free Cys, freshly prepared 400 mM iodoacetamide (Thermo Fisher Scientific 90034) stock solution in 50 mM ammonium bicarbonate was added to the supernatant to a final concentration of 20 mM, immediately vortexed, and incubated in the dark for 25 minutes at room temperature. After alkylation, freshly prepared DTT (dithiothreitol) stock solution was added to 50 mM final concentration to quench alkylation. Water was added to each sample to reach a final concentration of 4 M urea and 0.5% (w/v) of SDS.
[0215] A 100 μL suspension equivalent per sample of streptavidin magnetic beads (Thermo Fisher Scientific #88817) was washed twice with 4 M urea, 0.5% SDS (w/v), 100 mM sodium phosphate pH 8 and was added to each sample (about 1 mg), diluting each sample with an equal amount of water to reach a final concentration of 2 M urea, 0.25% SDS (w/v), 50 mM sodium phosphate pH 8 during pulldown. The tubes were rotated overnight at 4° C. Following streptavidin pull-down, the magnetic beads were washed three times with 4 M urea, 0.5% SDS (w/v), 100 mM sodium phosphate pH 8, and three times with the same buffer without SDS. The beads were transferred to new tubes for the last wash step. Before final pulldown of the beads for mass spectrometry analysis, 5% of beads resuspension was removed for streptavidin-HRP blotting.
[0216] For on-bead digestion and TMT labeling, the liquid reagents used were HPLC quality grade. Washed beads were re-suspended in 50 μL of 200 mM EPPS (4-(2-Hydroxyethyl)-1-piperazinepropanesulfonic acid) buffer pH 8.5, 2% acetonitrile (v/v) with 1 μL of LysC stock solution (2 mg/ml, Wako), vortexed briefly and incubated at 37° C. for 3 hr. Then, 50 μL of trypsin stock (Promega #V5111) diluted 1:100 (v/v) in 200 mM EPPS pH 8.5 was added. After mixing, digests were incubated at 37° C. overnight and beads were magnetically removed. Peptides were directly labeled after digest. For this, acetonitrile was added to a concentration of 30% (v/v) and peptides were labeled with TMT 10-plex reagents (Thermo Fisher Scientific #90406) for 1 hr. Reactions were quenched with hydroxylamine at a final concentration of 0.3% (v/v) for 15 minutes and 1% of labeled peptides were analyzed for efficiency of label incorporation and relative ratios by mass spectrometry. After quenching, peptide solutions were acidified with formic acid, trifluoroacetic acid (TFA) was added to a concentration of 0.1% and peptides were desalted and fractionated by high pH reversed phase chromatography (Thermo Fisher Scientific #84868). After loading of labeled peptides onto pre-conditioned columns and a single wash with water, excess unincorporated TMT label was removed by washing reversed phase columns once with 0.1% trimethylamine (TEA) buffer containing 5% acetonitrile. Samples were fractionated under alkaline conditions into 12 fractions with increasing concentrations of acetonitrile: 10%, 12.5%, 15%, 17.5%, 20%, 25%, 30%, 35%, 40%, 50%, 65% and 80%. Fractions 1 and 7, 2 and 8, 3 and 9, 4 and 10, 5 and 11, 6 and 12 were pooled to obtain 6 final pooled fractions for subsequent analysis. Pooled fractions were dried to completion and further purified and desalted by acidic C.sub.18 solid phase extraction (StageTip). Labeled peptides were finally re-suspended in 1% formic acid (v/v) and 3% acetonitrile (v/v).
[0217] With regard to whole cell proteomics, specifically cell lysis, protein digest and TMT labeling mass spectrometry analysis, the cells were lysed by homogenization (QIAshredder cartridges, Qiagen) in lysis buffer (2% SDS, 150 mM NaCl, 50 mM Tris pH 7.4). Lysates were reduced with 5 mM DTT, alkylated with 15 mM iodoacetamide for 30 minutes in the dark, alkylation reactions quenched with freshly prepared DTT added to a concentration of 50 mM and proteins precipitated by methanol/chloroform precipitation. Digests were carried out in 1M urea freshly prepared in 200 mM EPPS pH 8.5 in presence of 2% acetonitrile (v/v) with LysC (Wako, 2 mg/ml, used 1:75 w/w protease:substrates during digest) for 3 hours at room temperature and after subsequent addition of trypsin (Promega #V5111, stock 1:100 w/w protease:substrates) over night at 37° C. Missed cleavage rate was assayed from a small aliquot by mass spectrometry. For the whole proteome analysis, digests containing approximately 60 μg of peptide material were directly labeled with TMT reagents (Thermo Fisher Scientific). Labeling efficiency and TMT ratios were assayed by mass spectrometry, while labeling reactions were stored at −80° C. After quenching of TMT labeling reactions with hydroxylamine, TMT labeling reactions were mixed, solvent evaporated to near completion and TMT labeled peptides purified and desalted by acidic reversed phase C.sub.18 chromatography. Peptides were then fractionated by alkaline reversed phase chromatography into 96 fractions and combined into 24 samples.
[0218] For the mass spectrometry analysis, data collection followed a MultiNotch MS.sup.3 TMT method using an Orbitrap Lumos mass spectrometer coupled to a Proxeon EASY-nLC 1200 liquid chromatography (LC) system (both Thermo Fisher Scientific). The capillary column used was packed with C.sub.18 resin (35 cm length, 75 μm inner diameter, matrix 2.6 μm Accucore (Thermo Fisher Scientific)). Peptides of each fraction were separated for 4 hours over acidic acetonitrile gradients by LC prior to mass spectrometry (MS) analysis. The scan sequence started with an MS' scan (Orbitrap analysis; resolution 120,000; mass range 400-1400 Th). MS.sup.2 analysis followed collision-induced dissociation (CID, CE=35) with a maximum ion injection time of 150-300 ms and an isolation window of 0.4 m/z. In order to obtain quantitative information, MS.sup.3 precursors were fragmented by high-energy collision-induced dissociation (HCD) and analyzed in the Orbitrap at a resolution of 50,000 at 200 Th.
[0219] Peptides were searched with SEQUEST (v.28, rev. 12) based software against a size-sorted forward and reverse database of the M. musculus proteome (Uniprot 07/2014) with added common contaminant proteins. For this, the spectra were first converted to mzXML. Searches were performed using a mass tolerance of 20 ppm for precursors and a fragment ion tolerance of 0.9 Da. For the searches, maximally 2 missed cleavages per peptide were allowed. The inventors searched dynamically for oxidized methionine residues (+15.9949 Da) and, where indicated, for phospho-modification of S,T and Y residues (+79.9663 Da). The inventors applied a target decoy database strategy and a false discovery rate (FDR) of 1% was set for peptide-spectrum matches following filtering by linear discriminant analysis (LDA). The FDR for final collapsed proteins was 1%. MS.sup.1 data were calibrated post search and searches performed again. A modified version of the Ascore algorithm was used to quantify the confidence assignment of phosphorylation sites. Phosphorylation localized to particular residues required Ascore values >13 (p≤0.05) for confident localization. Quantitative information on peptides was derived from MS.sup.3 scans. Quant tables were generated requiring an MS.sup.2 isolation specificity of >70% for each peptide and a sum of TMT signal to noise (s/n) of >200 over all channels for any given peptide and exported to Excel and further processed therein.
[0220] The relative summed TMT s/n for proteins between two experimental conditions (referred to as “enrichment” above) was calculated from the sum of TMT s/n for all peptides quantified of a given protein. For gene ontology (GO) term enrichment, the BINGO package in Cytoscape was used. Scaled quantification data were subjected to two-way clustering (JMP software package) and changes in enrichment were analyzed using Graphpad Prism 8 (Graphpad Software). FDR corrected p-values were used for volcano plots.
[0221] With regard to the purification of GFP-conjugated Rad and the phosphoproteomic analysis, HEK293T cells were cultured in DMEM with 10% FBS and 1% Pen-Strep. Cells were transfected with GFP-Rad using lipofectamine 2000, as described above. Media was changed 4-6 hours after transfection. After 24 hours, the cells were treated with trypsin and spun down for 5 minutes at 1000 rpm. The cells were then resuspended in PBS with 10 μM forskolin for 5 minutes. After washing the cell pellets three times with phosphate-buffered saline (PBS), the cells were frozen at −80° C. The cold cell pellets were lysed in PBS with 0.1% triton X-100 (v/v, Sigma) and a phosphatase inhibitor mixture (PhosSTOP, Roche) by pipetting up and down several times. The lysates were homogenized by passing them through QIAshredder cartridges (Qiagen) and incubated with GFP-trap agarose beads (Chromotek, Germany) for 4 hours at 4° C. with constant rotation. Beads were washed 3 times with PBS with 0.1% (v/v) Triton and three times with detergent-free PBS and subjected to on-bead digest with trypsin (Promega #V5111), LysC (Wako) or ArgC (Promega #V1881, ArgC digestion buffer 50 mM Tris-HCL pH 7.8, 5 mM CaCl.sub.2, 2 mM EDTA, 2% acetonitrile (v/v)) separately, as described above, overnight at 37° C. After acidification, peptides were purified by reversed phase C.sub.18 chromatography and subjected to MS/MS analysis. For this, the same parameters as given above for the MS' and MS.sup.2 scans were used with an isolation window of 1.2 Da and taking neutral loss of 97.9763 Da into account with multi-stage activation (MSA) set for MS.sup.2 scans. Analysis of phospho-site localization was performed as described above.
[0222] For the statistical analysis, results are presented as mean±SEM. For comparisons between two groups, the Student's t-test was used. Statistical analyses were performed using Prism 8 (Graphpad Software). For multiple group comparisons, a one-way ANOVA followed by either Dunnett's or Tukey's post-hoc test were performed using Prism 8. Differences were considered statistically significant at values of P<0.05.
[0223] Ca.sup.2+ influx through L-type Ca.sub.V1.2 channels into cardiomyocytes initiates excitation-contraction coupling by triggering Ca.sup.2+ release from ryanodine receptors, and modulates action potential duration and gene expression. In the failing heart, activation of Ca.sub.V1.2 channels can trigger electrical instability, early after-depolarizations, arrhythmias, and sudden death. Moreover, increased activation of Ca.sub.V1.2 channels can elicit Ca.sup.2+-responsive signaling pathways, including those affecting gene expression, which contributes to the pathogenesis of heart failure and hypertrophy.
[0224] Voltage-gated Ca.sup.2+ channels are multi-subunit protein complexes comprised of a pseudo-tetrameric pore-forming α.sub.1 subunit and a cytosolic β subunit that interacts with the α.sub.1 subunit at its α-interaction domain (AID) within the intracellular linker between domains I and II. This interaction and its supporting molecular interfaces has emerged as a central hub that organizes a sophisticated scheme of ion channel regulation that is critical for the maintenance of proper cardiac function. In heterologous cells, binding to the β subunit is obligatory for α.sub.1C trafficking to the plasma membrane, and for normalizing channel activation and inactivation gating properties via a mechanism that requires a rigid IS6-AID helix linker.
[0225] Following activation, the channel undergoes Ca.sup.2+-dependent inactivation, which is dependent upon calmodulin (CaM), and voltage-dependent inactivation, which is dependent upon the β subunit, the I-II linker and the cytosolic ends of the S6 transmembrane segments. Cardiac Ca.sub.V1.2 channels are prominently up-regulated by (3-adrenergic agonists via activation of protein kinase A (PKA). This regulation, a component of the physiological ‘fight-or-flight’ response, contributes to the increased contractility of the heart during exercise. The overall features of this regulation—PKA-dependent enhanced whole-cell current amplitude, leftward shift in voltage-dependence of channel activation, and increased single-channel channel open probability (P.sub.o)—are well-established, yet essential molecular details remained stubbornly enigmatic. Recently, we showed that Ca.sub.Vβ subunits are required for β-adrenergic regulation of Ca.sub.V1.2 channels and positive inotropy in the heart. Further, by using proximity proteomics and multiplexed quantitative mass spectrometry, and cellular electrophysiology, we found that the Ca.sup.2+ channel inhibitor Rad.sup.28, which binds to the β subunit, is the functionally relevant PKA target, imparting β-adrenergic regulation upon Ca.sub.V1.2.
[0226] Beyond these, the I-II loop is also subject to alternative splicing that tunes channel function and interacting proteins in a cell-type specific manner. The inclusion of alternatively-spliced exon 9* is observed at high levels in the smooth muscle and at lower but variable expression in adult heart that increases in animal models of hypertrophy and in the peri-infarct zone after MI in mice. This variant results in the insertion of a 25 amino acid residues C-terminal to the AID and tunes channel activation. In all, the modulatory landscape supported by the Ca.sub.V1.2 domain I-II linker appears rich and multifaceted, involving the β subunits, RGK proteins, phosphoregulation by PKA, and alternative splicing, all poised to precisely tune Ca.sup.2+ influx into cardiomyocytes.
[0227] Several important mechanistic unknowns persist impeding in-depth pathophysiological understanding. First, although Ca.sub.Vβ-α.sub.1 interaction is obligatory for Ca.sub.V1.2 trafficking in heterologous cells, we found it to be dispensable for cell surface trafficking, for basal function and excitation-contraction coupling in adult cardiomyocyte, thus raising fundamental questions about the functional role of Ca.sub.Vβ subunits in cardiomyocytes. Second, it is unknown how distal conformational changes involving Rad interaction with the Ca.sub.Vβ subunit and phosphorylation-dependent signaling are ultimately conveyed to the channel pore-domain. Third, how alternative splicing of the domain I-II linker contributes to this overall regulatory scheme including effects of phosphorylation remains to be fully-elucidated. Importantly, the pathogenesis of heart failure has been long-suspected to reshape this regulatory framework, although the precise changes remain largely undefined.
[0228] To dissect these possibilities, we measured baseline channel gating properties and the strength of adrenergic modulation of Ca.sub.V1.2 in three transgenic mouse models: (1) Our previously-established AID mutant where Ca.sub.V1.2 is incapable of binding to the β subunit, (2) Triple-glycine substitution (GGG-α.sub.1C) of the rigid I-II linker, which connects the pore-domain with the AID. These mutations have been previously shown to disrupt coupling between these two domains, and (3) The insertion of 25 amino acid residues C-terminal to the AID corresponding to the introduction of exon 9* variant (9*-α.sub.1C). We found that the loss of β subunit binding diminishes channel P.sub.o by destabilizing high-activity gating mode. In like manner, increased flexibility of the IS6-AID rigid linker imparted by triple-glycine substitution also reduced basal P.sub.o by preventing sojourns to the high activity gating mode and abolished stimulation by β-adrenergic agonists. By contrast, we found that insertion of the 9* exon conferred the opposite properties, namely an increase in basal channel P.sub.o by increasing channel availability and stabilizing the high-activity gating mode, and a preservation of physiological responses to the β-adrenergic signaling cascade. Interestingly, this functional signature is reminiscent of Ca.sub.V1.2 behavior in myocytes from failing human hearts, which also show increased availability and P.sub.o. Indeed, we found that myocytes of patients with end-stage heart failure (HF) show increased splice inclusion of exon 9* suggesting that molecular alterations in I-II loop may be pathophysiologically important. Taken together, these findings identify the IS6-AID linker as a vital molecular element for transducing the PKA-induced activation of Ca.sub.V1.2, and as a molecular rheostat for Ca.sub.V1.2 activity whereby distinct structural changes elicited by β subunits, RGK proteins, and alternative splicing bidirectionally tune Ca.sup.2+ influx into the heart in both normal physiology and during heart failure.
[0229] To study cardiac Ca.sub.V1.2 channels in their native context, we generated transgenic mice featuring inducible, cardiac-specific expression of dihydropyridine (DHP)-resistant, FLAG-epitope-tagged α.sub.1C. We have previously shown that control transgenic FLAG-tagged DHP-resistant α.sub.1C subunits, termed pseudo-wild-type (pWT) α.sub.1C have similar properties as native cardiac Ca.sup.2+ channels. To study properties of Ca.sub.V1.2 devoid of the 13 subunit, we used transgenic mice expressing rabbit α.sub.1C with a disrupted AID via alanine substitutions of 3 conserved residues, Y467, W470 and 1471, that are essential for binding of β subunit. We further generated transgenic mice expressing FLAG-tagged DHP-resistant α.sub.1C with a substitution of three glycine residues (GGG) for the AKA motif in the IS6-AID linker, designated GGG-α.sub.1C. All three lines, pWT-, AID- and GGG-a.sub.1C were crossed with α-myosin heavy chain reverse transcriptional transactivator (αMHC-rtTA) transgenic mice. Several GGG-α.sub.1C and AID-mutant founder transgenic lines were generated, and all lines demonstrated doxycycline-induced α.sub.1C expression after crossing with the αMHC-rtTA mice. As expected, channels with a disrupted AID motif do not bind β subunits, assessed by anti-FLAG antibody immunoprecipitation of cleared homogenates. By comparison, GGG-α.sub.1C channels exhibit robust β subunit binding similar to pWT α.sub.1C.
[0230] Previously, we showed that β-less Ca.sub.V1.2 channels traffic to the dyad and produce currents that mediate normal E-C coupling in cardiomyocytes. To determine whether β binding to α.sub.1C alters basal channel gating in cardiomyocytes, we utilized low-noise single-channel recordings of acutely isolated cardiomyocytes. Stochastic channel openings, which reflect near-steady-state open probability (P.sub.o) at each voltage, were elicited by a slow voltage ramp. Ca.sup.2+ channels in cardiomyocytes from non-transgenic mice were inhibited by 300 nM nisoldipine. In the transgenic mice, however, there is a mixture of transgenic nisodipine-resistant channels and endogenous nisoldipine-sensitive channels. As dihydropyridines are known to allosterically modify channel gating, partial blockade of nisoldipine-resistant channels may be a confounding factor. To obviate this possibility, we obtain ˜80-120 stochastic records from each patch and subsequently apply nisoldipine to identify resistant transgenic channels. This process allows us to unambiguously establish baseline function of mutant Ca.sub.V1.2. Indeed, exemplar traces from DHP-resistant pWT channels confirm channel openings in the presence of nisoldipine. Measurements of steady-state P.sub.o as a function of voltage were obtained by averaging many records and by normalizing the unitary current level. Reassuringly, steady-state P.sub.o-V relationships of pWT channels are similar to that of non-transgenic channels. The DHP-resistant AID-mutant α.sub.1C channels, however, displayed a striking 3.5-fold reduction in maximal P.sub.o compared to DHP-sensitive endogenous Ca.sup.2+ channels from non-transgenic Ca.sup.2+ mice and DHP-resistant channels from pWT mice. To further elucidate changes in elementary channel gating mechanisms, we scrutinized single-trial average open probabilities (
[0231] Having established the importance of β subunits in upregulating Ca.sub.V1.2 channel activity, we considered whether the rigid I-II linker between the AID and the IS6 pore helix is essential for tuning channel function. Introduction of the three glycine residues in the IS6-AID linker had no effect on α.sub.1C subcellular localization and functional expression in cardiomyocytes Immunofluorescence studies using anti-FLAG antibody on fixed cardiomyocytes showed that GGG-α.sub.1C Ca.sub.V1.2 channels demonstrated a striated z-disk pattern consistent with localization to the surface membrane and transverse-tubules (t-tubules). Similar to cardiomyocytes expressing pWT or AID-mutant α.sub.1C transgenic channels, field-stimulated contraction of cardiomyocytes isolated from GGG-α.sub.1C transgenic mice persisted in the presence of 300 nM nisoldipine, which is sufficient to block excitation-contraction coupling induced by endogenous Ca.sub.V1.2 channels in non-transgenic mice, indicating that the GGG-α.sub.1C Ca.sub.V1.2 channels are localized correctly and flux sufficient Ca.sup.2+ to evoke Ca.sup.2+-induced Ca.sup.2+ release in cardiomyocytes.
[0232] When GGG-α.sub.1C is co-expressed in Xenopus oocytes with β.sub.2B, the predominant β.sub.2 isoform in the heart, channels displayed accelerated voltage-dependent inactivation but slowed Ca.sup.2+-dependent inactivation. Here, we assessed aggregate inactivation of Ca.sup.2+ channels in the heart with Ca.sup.2+ as a charge carrier. The inactivation kinetics of nisoldipine-resistant GGG-α.sub.1C Ca.sup.2+ currents were significantly faster at +30 mV test potential compared to pWT controls. Therefore, in adult cardiomyocytes Ca.sub.V1.2 channels comprised of transgenic GGG-α.sub.1C have faster overall inactivation kinetics as compared to transgenic pWT Ca.sub.V1.2 channels likely reflecting accelerated kinetics of voltage-dependent inactivation.
[0233] Given that β subunits upregulate Ca.sub.V1.2 channel P.sub.o, we considered whether disruption of the rigid IS6-AID linker might reverse this effect. Consistent with this possibility, the conductance-voltage (G-V) relationships, normalized to cell capacitance, of nisoldipine-resistant transgenic mutant GGG-α.sub.1C channels was reduced compared to pWT. To directly assess changes in P.sub.o, we used low-noise single-channel recordings of acutely isolated cardiomyocytes from the GGG-α.sub.1C transgenic mice. Exemplar records show DHP-resistant GGG-α.sub.1C channels exhibit sparse channel openings, a distinct gating pattern compared to pWT and non-transgenic channels which undergo high-activity flickery openings. Ensemble average P.sub.o-V relationship and bar-graph summary of maximal P.sub.o from individual patches show a striking 3.5-fold reduction in maximal P.sub.o compared to both pWT and non-transgenic channels. Interestingly, this reduced basal activity of GGG-α.sub.1C is reminiscent of β-less AID-mutant channels suggesting that disruption of the rigid IS6-AID linker may be akin to uncoupling β subunit from the channel pore. To further scrutinize this possibility, we assessed average P.sub.o from individual trials for one channel patches of GGG-α.sub.1C. Unlike pWT channels, the single-trial
[0234] Having established the loop as a vital regulator of channel openings, we considered whether alternative splicing in this domain might tune channel gating. The 9* exon, which encodes a 75-nucleotide sequence within the is expressed at a high level in aortic smooth muscle and has lower expression in non-diseased adult human and rat heart. The 9* exon-containing channels are however increased in rodent models of hypertrophy and in the perinfarct zone. This altered pattern of α.sub.1C splicing in rodent models raises the possibility of pathological inclusion of exon 9* in human cardiac disease, an outcome yet to be observed clinically. As such, we sought to determine whether the frequency of exon 9* splice variant is changed in humans with end-stage heart failure. Samples from patients undergoing LVAD implantation Columbia-NY Presbyterian Hospital were acquired in the operating room, and compared to samples obtained from donor hearts without heart failure. Exon 9* transcript expression was increased in humans with heart failure compared to control samples.
[0235] To determine the functional consequence of exon 9* splice inclusion in cardiomyocytes, we created transgenic mice with cardiac-specific expression of DHP-resistant Ca.sup.2+ channels containing exon 9*, but with all other mutually exclusive exons typical of cardiac variants. The 9*-α.sub.1C channels still bound β subunits similar to pWT channels, and trafficked to the surface membrane and t-tubules, as demonstrated by the striated z-disk pattern of immunofluorescence. Whole-cell electrophysiological analysis of nisoldipine-resistant transgenic mutant 9*-α.sub.1C channels revealed a significant increase in the G-V relationship normalized to cell capacitance in comparison to pWT channels. Changes in whole cell current may stem from alterations in channel trafficking, unitary conductance, or baseline open probability. To dissect these mechanistic possibilities, we undertook low-noise single-channel recordings to determine whether the increased normalized conductance of 9*-α.sub.1C reflected a genuine increase in channel P.sub.o. In the presence of nisoldipine, the DHP-resistant 9*-α.sub.1C channels exhibited robust channel openings with the ensemble average demonstrating a marked increase in maximal P.sub.o (0.26±0.03, mean±s.e.m) in comparison to pWT (0.15±0.015, mean±s.e.m). Furthermore, examination of single-trial P.sub.o distribution revealed a virtual elimination of blank traces (˜0% for 9* versus 40.5% for pWT), and increased propensity for the high activity gating mode (56.7%). Thus, the insertion of the 9* exon into the loop upregulates basal voltage-dependent opening of Ca.sup.2+ channels by enhancing channel availability and stabilizing the high P.sub.o gating configuration.
[0236] Recently, we determined that the mechanism of adrenergic stimulation of Ca.sub.V1.2 requires constitutive pre-inhibition of Ca.sub.V1.2 owing to Rad interaction with the Ca.sub.V channel β subunit. PKA phosphorylation of Rad at conserved sites in its C-terminus alters its interaction with the Ca.sub.V channel 13 subunit and relieves constitutive inhibition. As increased flexibility of the IS6-AID linker effective decouples β subunit mediated regulation, we hypothesized that the rigid IS6-AID linker may be also essential for adrenergic upregulation of Ca.sub.V1.2 currents. Consistent with this possibility, at the single channel level, Rad inhibited Ca.sub.V1.2 channels have decreased availability and increased propensity for low activity gating mode, akin to GGG-α.sub.1C channels.
[0237] In cardiomyocytes isolated from mice expressing transgenic pWT α.sub.1C, 10 μM forskolin (which stimulates adenylyl cyclase to produce cyclic AMP, thereby activating PKA) increased the nisoldipine-insensitive maximal conductance (G.sub.max) by a mean of 1.4-fold, and shifted the V.sub.50 for activation. Ca.sup.2+ currents through transgenic GGG-α.sub.1C channels, in contrast, were not stimulated by forskolin. By comparison, forskolin increased the G.sub.max of 9* exon-containing Ca.sub.V1.2 channels by a mean of 1.4-fold, and shifted the V.sub.50 for activation suggesting that 9* exon still preserves responsiveness for PKA modulation. For both pWT and 9* Ca.sub.V1.2 channels, the forskolin-induced enhancement of Ca.sup.2+ current was greatest at hyperpolarized potentials and fell as the test potential approached the reversal potential, consistent with prior observations. The GGG Ca.sub.V1.2 channels failed to respond to forskolin at any test potential.
[0238] We used reconstitution studies in HEK cells to further gain mechanistic insights into the mechanisms by which the β subunit and I-II loop modulate adrenergic regulation of Cav1.2. We co-expressed Rad with α.sub.1C and β.sub.2B subunits in HEK293T cells, limiting Rad expression by using 1:3 to 1:6 cDNA ratio of Rad:Ca.sub.V1.2 subunits in order to avoid eliminating the Ca.sup.2+ current. Perforated, whole-cell patch clamp was used to preserve the normal intracellular milieu and signaling cascades, and minimize current run-down. In HEK293T cells transfected with only α.sub.1C+β.sub.2B, superfusion of forskolin over 1-3 minutes had no impact on Ba.sup.2+ current. In contrast, applying forskolin to cells expressing α.sub.1C+β.sub.2B+Rad increased the maximal conductance (G.sub.max) by a mean of 1.6-fold, and shifted the V.sub.50 for activation. Consistent with our findings in cardiomyocytes, in cells transfected with GGG-α.sub.1C forskolin failed to increase G.sub.max or shift the voltage-dependence of activation in a hyperpolarizing direction. In contrast, applying forskolin to cells expressing 9*-α.sub.1C, β.sub.2B, and Rad increased the G.sub.max by a mean of 1.6-fold, and shifted the V.sub.50 for activation. Thus, PKA-modulation of Ca.sub.V channels in heart and cardiomyocytes is dependent on both Rad phosphorylation and a rigid IS6-AID linker.
[0239] This work has examined mechanisms of regulation of cardiac Ca.sub.V1.2 channel gating by three essential factors with important physiological and pathophysiological consequences that converge at the α.sub.1C subunit I-II loop—auxiliary Ca.sub.Vβ subunits, sympathetic activation, and alternative splicing. We discuss our findings on these three inter-related regulatory mechanisms in the context of previously published reports.
[0240] Many reconstitution studies in heterologous mammalian cells established the idea that auxiliary Ca.sub.Vβ subunits were necessary for trafficking of Ca.sub.V1.2 channels to the plasma membrane, and that this depended on high-affinity Ca.sub.Vβ binding to a discrete α.sub.1-interaction domain (AID) in the α.sub.1C I-II loop. Beyond trafficking, Ca.sub.Vβ binding also boosted Ca.sub.V1.2 P.sub.o and produced a hyperpolarizing shift in the voltage-dependence of channel activation. These latter gating effects were deduced to require formation of a rigid helix spanning IS6 and AID because they were selectively eliminated by a triple glycine substitution that disrupts the continuous helix. In adult cardiomyocytes, cardiac-specific excision of the dominant cardiac Ca.sub.Vβ.sub.2 isoform that reduced protein levels by 96% resulted in only a 26% reduction in whole-cell Ca.sub.V1.2 current, providing a first hint that, by contrast to heterologous cells, Ca.sub.Vβ binding to α.sub.1C may not be obligatory for forming functional Ca.sub.V1.2 channels at the cell surface. We explicitly confirmed this by showing that transgenic mice expressing a DHP-resistant α.sub.1C mutant that does not bind Ca.sub.Vβ, nevertheless, yielded robust nisoldipine-resistant whole-cell Ca.sup.2+ currents indicating that the channels made it to the surface sarcolemma. While Ca.sub.Vβ does not appear necessary for surface trafficking of Ca.sub.V1.2 in adult cardiomyocytes, it remained unclear whether this also extended to the impact on channel P.sub.o. Here, we unambiguously show using single-channel recordings that Ca.sub.Vβ binding to α.sub.1C in cardiomyocytes enhances Ca.sub.V1.2 channel P.sub.o by 3.5-fold. The single-channel gating signature of AID-mutant channels was dominated by null (46%) and low-activity (47%) sweeps, with rare sojourns into a high-activity (7%) gating mode. By contrast, Ca.sub.Vβ-bound WT channels displayed more high-activity sweeps (26%) and correspondingly lower null (41%) and low-activity (33%) gating modes. GGG-α.sub.1C channels displayed only blanks and low-activity gating. These results are consistent with the interpretation that in adult cardiomyocytes Ca.sub.Vβ induces high-P.sub.o gating by stabilizing a continuous helix linking IS6 to AID. Unbinding of Ca.sub.Vβ (as occurs with AID-mutant) reduces the propensity for helix formation and accordingly decreases fractional occupancy of the high-P.sub.o gating mode. GGG-α.sub.1C completely dispels the continuous helix and, therefore, these channels do not sojourn into the high-P.sub.o mode. In the cryo-electron microscopy structure of the homologous Ca.sub.V1.1 channel, comparison of the two conformations, class Ia and II, revealed significant shifts of the C-terminal end of IS6 and the I-II helix of α.sub.1 subunit, and the β subunit. Substitution of the three glycine residues in either one of the two conformations likely alters the conformation and increases the flexibility of the I-II loop and the position of the β subunit.
[0241] We recently reported that β-adrenergic regulation of cardiac Ca.sub.V1.2 channel requires Ca.sub.Vβ binding binding to α.sub.1C I-II loop, and PKA phosphorylation of Rad, a small G-protein that inhibits Ca.sup.2+ channels via binding to Ca.sub.Vβ subunit. Here, we report that GGG-α.sub.1C channels expressed in cardiomyocytes, or reconstituted with Rad in heterologous cells, do not display PKA-mediated up-regulation of whole-cell current density, even though they bind Ca.sub.Vβ. This result suggests the rigid IS6-AID helical linker as another essential requirement for transduction of sympathetic regulation of Ca.sub.V1.2 that is essential for the fight or flight response. The exclusively low-P.sub.o gating mode of GGG-α.sub.1C channels is reminiscent of the behavior of Rad-inhibited channels. It is intriguing to speculate that Rad interaction with Ca.sub.Vβ may structurally alter the IS6-AID linker as a mechanism for channel inhibition.
[0242] Finally, we examined the impact of the α.sub.1C 9*-splice variant that is elevated in the failing heart. Interestingly, the 9*-α.sub.1C channels had increased basal P.sub.o and were exclusively recorded in high activity gating modes, with no sojourns into mode 0 gating. Given the proximity of the 9* exon to the AID, and the role of the continuous IS6-AID helix in promoting high activity Cav1.2 gating, one explanation is that the 9* exon may increase basal P.sub.o by further stabilizing the rigid IS6-AID helical linker. Another explanation is that insertion of the 9* exon may affect the function of the voltage-sensor domain of domain II. Previous single-channel experiments have indicated that Ca.sub.V1.2 channels in failing hearts have an elevated basal P.sub.o which was putatively attributed to enhanced phosphorylation of the channel Our results suggest that the increased Ca.sub.V1.2 P.sub.o observed in heart failure may be due, in part, to the emergence of the alternatively spliced 9*-α.sub.1C variant in this condition.
[0243] These results provide key insight into the mechanism underlying the β-adrenergic stimulation of Ca.sup.2+ current and contractility in the heart. Upon β-adrenergic stimulation, PKA phosphorylation of Rad releases the Rad-induced inhibition of the Ca.sup.2+ channels. The Rad-inhibited channels are the heart's functional reserve of Ca.sup.2+ channels, likely having minimal effects on excitation-contraction coupling at rest, but primed to respond to β-adrenergic agonists upon release of Rad-induced inhibition. Thus, therapeutic release of Rad-mediated inhibition of Ca.sup.2+ channels could be inotropic. β subunit binding to the α.sub.1C subunit enables transitions to a high P.sub.o state, as Ca.sup.2+ channels with the AID-mutation fail to transition to high P.sub.o states and also fail to respond to β-adrenergic stimulation.
[0244] It is to be understood that the method of screening for drugs for prevention of pathologic calcium overload in cardiomyocytes is not limited to the specific embodiments described above, but encompasses any and all embodiments within the scope of the generic language of the following claims enabled by the embodiments described herein, or otherwise shown in the drawings or described above in terms sufficient to enable one of ordinary skill in the art to make and use the claimed subject matter.