Sample holder with magnetic base and magnetisable body
10293344 ยท 2019-05-21
Assignee
Inventors
Cpc classification
G01N35/0098
PHYSICS
B03C1/002
PERFORMING OPERATIONS; TRANSPORTING
B03C1/025
PERFORMING OPERATIONS; TRANSPORTING
B03C2201/18
PERFORMING OPERATIONS; TRANSPORTING
B03C1/288
PERFORMING OPERATIONS; TRANSPORTING
B01L9/06
PERFORMING OPERATIONS; TRANSPORTING
B03C2201/26
PERFORMING OPERATIONS; TRANSPORTING
International classification
G01N35/00
PHYSICS
B03C1/033
PERFORMING OPERATIONS; TRANSPORTING
B01L9/06
PERFORMING OPERATIONS; TRANSPORTING
B03C1/025
PERFORMING OPERATIONS; TRANSPORTING
Abstract
This invention relates to a sample holder for isolating magnetically labelled particles from a non-magnetic medium in a plurality of samples. The holder comprises a magnetic base for applying a magnetic force to the magnetically labelled particles and a body which is mountable on the base and demountable therefrom. The body comprises an array of sample holding portions and a magnetizable member which is magnetically urged towards the magnetic base when the body is seated on the base, whereby the body is urged to remain seated on the base. The invention also relates to use of the sample holder to separate magnetic particles from a non-magnetic medium and methods of performing such a separation.
Claims
1. A sample holder comprising: a magnetic base comprising one or more high gradient magnets; and a body which is mountable on the magnetic base and demountable therefrom, the body comprising an array of sample holding portions and at least one magnetisable member, the magnetisable member magnetically urged towards the magnetic base when the body is seated on the magnetic base, and wherein the same one or more high gradient magnets comprised in the magnetic base apply a magnetic force to a sample comprising magnetically labelled particles in a nonmagnetic medium and also magnetically urge the body to remain seated on the magnetic base when the sample holder is inverted; wherein the body comprises two opposed arms, each containing a row of the array of sample holding portions, and wherein the opposed arms are interconnected at an upper portion thereof by a bridge portion adapted to be seated on the base; wherein the bridge portion comprises the at least one magnetisable member.
2. The sample holder of claim 1, wherein the one or more high gradient magnets are selected from the group consisting of permanent magnets and electromagnets.
3. The sample holder of claim 1, wherein the one or more high gradient magnets comprises a plurality of magnets and the sample holder is adapted for the plurality of magnets to be juxtaposed to the plurality of samples when the body is seated on the magnetic base.
4. The sample holder of claim 1, wherein the magnetic base comprises a generally rectangular portion with two opposed walls upright and joined at the top by a top wall on which the body is adapted to be seated.
5. The sample holder of claim 1, wherein the body is a rack comprising twenty sample vessel retaining portions.
6. The sample holder of claim 5, wherein the at least one magnetisable member comprises a single magnetisable member which is disposed at a generally central position intermediate the ends of the rack.
7. The sample holder of claim 1, wherein the at least one magnetisable member comprises a plurality of magnetisable members, and wherein the bridge portion comprises the plurality of magnetisable members.
8. A method for separation of magnetically labelled particles from a nonmagnetic medium in a plurality of samples, comprising: placing each of the plurality of samples in a sample holding portion of the array of sample holding portions of the sample holder of claim 1; before or after placing the plurality of samples in the array of sample holding portions, seating the body on the magnetic base; and allowing the magnetically labelled particles to be separated from the non-magnetic medium by application of the magnetic force to the magnetically labelled particles by the magnetic base.
9. The method of claim 8, wherein the magnetically labelled particles are magnetic polymer particles.
10. The method of claim 8, wherein the magnetically labelled particles have a z-average diameter of no more than 10 m.
11. The method of claim 8, further comprising: inverting the sample holder to dispense the non-magnetic medium from the array of sample holding portions while retaining the magnetically labelled particles.
12. The method of claim 11, wherein the magnetic force exerted by the magnetic base on the magnetisable member retains the body in a seated arrangement on the base during the inverting of the sample holder.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1) Embodiments of the invention are further described hereinafter with reference to the accompanying drawings, in which:
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DETAILED DESCRIPTION
(15) Throughout the description and claims of this specification, the words comprise and contain and variations of them mean including but not limited to, and they are not intended to and do not exclude other moieties, additives, components, integers or steps. Throughout the description and claims of this specification, the singular encompasses the plural unless the context otherwise requires. In particular, where the indefinite article is used, the specification is to be understood as contemplating plurality as well as singularity, unless the context requires otherwise.
(16) Features, integers, characteristics, compounds, chemical moieties or groups described in conjunction with a particular aspect, embodiment or example of the invention are to be understood to be applicable to any other aspect, embodiment or example described herein unless incompatible therewith. All of the features disclosed in this specification including any accompanying claims, abstract and drawings, and/or all of the steps of any method or process so disclosed, may be combined in any combination, except combinations where at least some of such features and/or steps are mutually exclusive. The invention is not restricted to the details of any specific embodiments. The invention extends to any novel one, or any novel combination, of the features disclosed in this specification including any accompanying claims, abstract and drawings, or to any novel one, or any novel combination, of the steps of any method or process so disclosed.
(17) The reader's attention is directed to all papers and documents which are filed concurrently with or previous to this specification in connection with this application and which are open to public inspection with this specification, and the contents of all such papers and documents are incorporated herein by reference.
(18) All publications, patent applications, patents, and other references mentioned herein are incorporated by reference in their entirety. In case of conflict, the present specification, including definitions, will control.
(19) The present invention includes a sample holder for isolating magnetically labelled particles from a non-magnetic medium (e.g. a non-magnetic liquid or solution) in a plurality of samples. The holder comprises a magnetic base for applying a magnetic force to the magnetically labelled particles and a body which is mountable on the base and demountable therefrom. The body comprises an array of sample holding portions. Each of the sample holding portions can hold a sample of the plurality of samples. Each sample may be in a sample vessel retained by a said sample holding portion; alternatively the sample holding portion may comprise a vessel for retaining a sample. The body comprises a magnetisable member which is magnetically urged towards the magnetic base when the body is seated on the base, whereby the body is urged to remain seated on the base.
(20) The term magnetisable means responds to a magnetic field. A magnetisable member therefore may be (or can comprise a material) selected from a permanent magnet, a ferromagnetic substance, ferrimagnetic substance and a paramagnetic substance. A magnetisable material can comprise one or more of iron, cobalt, nickel, and/or one or more rare earths. For example a magnetisable material can be or can comprise an alloy comprising one or more of iron, cobalt, nickel, and/or one or more rare earths.
(21) The term magnetically labeled means responds to a magnetic field. Therefore magnetically labeled particles are particles that respond to a magnetic field. Such particles are disclosed in, for example, WO 2010/125170 and WO 2005/015216, (the contents of both of which are incorporated herein by reference). The particles may be monodisperse. By monodisperse is meant that for a plurality of particles (e. g. at least 100, more preferably at least 1000) the particles have a coefficient of variation (CV) of their diameters of less than 20%, for example less than 15%, typically of less than 10%. The particles can have a z-average diameter of no more than 10 m, for example of no more than 5 m or of no more than 1 m. The z-average diameter can be measured by photon correlation spectroscopy.
(22) Referring now in detail to the Figures of the illustrated embodiments of the disclosure,
(23) The sample rack and the magnetic base may have other geometries. If the base has a different geometry than rectangular as shown, the sample rack can have a complementary geometry with a bridge and an array of sample vessel retaining portions. For example, the base could have a circular geometry or ellipsoid geometry. For base with a circular geometry, the sample vessel retaining portions may be arranged in a circular or arcuate array. For a base with an ellipsoid geometry, the sample vessel retaining portions may be arranged in an elipsoid or arcuate array.
(24) The body may be a multiple well plate, such as a microtitre plate (e.g. a standard or deep well microtitre plate), instead of a rack. For example, the body may be selected from multiple well plates and/or microtitre plates with 6, 24, 48, 96, 384 or 1536 wells.
(25) Returning to
(26) The high-gradient magnetic assembly of the magnetic base 20, when present, is configured to provide a high-gradient magnetic field in regions proximate to the sample vessel retaining portions 40 when the rack 30 is fitted to the magnetic base 20. For example, the high-gradient magnetic assembly may comprise one or more magnets oriented such that the north and south poles of the one or more magnets are proximate to the sample vessel retaining portions 40 when the rack 30 is fitted to the magnetic base 20. The magnetic base 20 therefore suitably provides a high-gradient magnetic field that is suitable for attracting and separating magnetically labelled particles from fluid in which they are contained. Further details of magnetic assemblies suitable for use in a magnetic base of the present invention are provided, for example, in WO 2008/145712 (the contents of which are incorporated herein by reference), in particular at page 10, line 15 to page 19, line 26.
(27) The high-gradient magnetic assembly may comprise one or more permanent magnets. The high-gradient magnetic assembly may comprise one or more electromagnets. An electromagnet only provides a magnetic field when switched on. Thus, the skilled person will appreciate that, when an electromagnet is switched off, the magnetising portion does not provide a magnetic field from the electromagnet. In addition to on and off functionality, the magnetic field provided by an electromagnet may be adjusted by controlling the amount of current in the electromagnet when it is on. The high-gradient magnetic assembly may comprise one or more electromagnets. When the electromagnet is off the magnetisable member may not be urged to remain seated on the base, and when the electromagnet is on the magnetisable member may be urged to remain seated on the base. Switching the electromagnet from the off to on states, and/or on to off states, and/or control of the amount of the current in the on state may be done manually or by automation.
(28) The magnetic base may comprise one or more magnets to provide the magnetic field for isolating magnetically labeled particles from a non-magnetic medium, (e.g. providing a high-gradient magnetic field in the regions proximate to the sample vessel retaining portions), when the body is seated on the base. The magnetic base may comprise one or more magnets to exert a magnetic force on the magnetisable member(s), when the body is seated on the base. The magnetic force acts on the magnetisable member(s) to magnetically urge the magnetisable member(s) (and thus the body) towards the magnetic base.
(29) The one or more magnets that provide the magnetic field for isolating the magnetically labeled particles and the one or more magnets that exert the magnetic force on the magnetisable member(s) may be the same or different. The same one or more magnets may provide for isolating magnetically labeled particles and urging the body to remain seated on the base. When the one or more magnets are the same, an advantage of synergy is provided. Different one or more magnets may provide isolation of magnetically labeled particles and urging the body to remain seated on the base; e.g. a first set of one or more magnets may provide the isolating and a second set of one or more magnets may urge the body to remain seated on the base. When the one or more magnets are different, decoupling is provided.
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(33) The body, e.g. rack 30, of a sample holder of the invention may have a single magnetisable member or a plurality of magnetisable members. Where there is a plurality of magnetisable members in a rack 30 comprising a bridge portion, the bridge portion may comprise all the magnetisable members, e.g. in a generally symmetrical arrangement.
(34) Additionally or alternatively to one or more magnetisable members located on the underside of a bridge portion, magnetisable member 100 may be located in many other portions of the body. For example, a magnetisable member (e.g. the sole magnetisable member(s) of a sample holder) may be located on at least a portion of the inside of one or more of the opposed arms. A magnetisable member may be embedded within the material of the frame, where the magnetisable member is isolated from the external environment; this has the advantage of protecting the magnetisable member from environmental damage, e.g. corrosion. A magnetisable member may be located on the topside of the bridge portion, side(s), or other part of the body. Where a magnetisable member is located on the topside of the bridge portion or other part of the body, the magnetisable member may, in some instances, be detachable from the body; this can be particularly advantageous where the body is a multiple well or microtitre plate. For example, detachability of the magnetisable member(s) permits the use of a multiple well or microtitre plate that can be disposable, and a magnetisable member that can be reusable. A detachable magnetisable member may be used to vary or adjust the strength with which the body is held to the base, e.g. by selection of the material and/or size and/or location of the or each detachable magnetisable member. Thus a detachable magnetic member may allow the degree with which the body is urged to remain seated on the base to be adjusted for specific experiments.
(35) The material, size and location of the or each magnetisable member on the body can be selected to ensure that the magnetic force exerted by the base on the magnetisable member retains the body in seating arrangement on the base. This permits selection of the magnetic holding force predominantly independently of selection of the high-gradient magnetic field provided by the base. For example, the magnetic field provided by the base can be selected to optimise isolation of magnetically labelled particles from non-magnetic medium, while one or more of the material, size and location of the magnetisable member on the body can be selected to provide an optimal magnetic holding force between the body and the base. This can be advantageous when the same one or more magnets in the base provide the magnetic field for isolating magnetically labeled particles and the magnetic force on the magnetisable member(s) when the body is seated on the base.
(36) The magnetic force exerted by the base on the magnetisable member of the body may retain the body in seated arrangement on the base when the sample holder is inverted. Inverted in this context means that the sample holder is tilted sufficiently to decant non-magnetic medium, if present, from one or more samples that may be present in the array of sample holding portions. For example, inverting can mean turning the sample holder upside down, that is rotating the sample holder by approximately 180, thereby permitting removal of the non-magnetic medium. For example, inverting can mean rotating the sample holder by an angle of between about 95 and about 180.
(37) The sample holder of the present invention provide a number of advantages. For example, it provides a benefit of synergy: the magnetic field provided by the base, which in use isolates magnetically labelled particles from non-magnetic medium, is also utilised to retain the body in seated arrangement with the base. The system of the present invention, which utilises magnetic attraction between a magnetisable member on or in the body and magnetic field provided by the base to retain the body on the base, has the advantage of being relatively constant over time and relatively simple for a user to implement. This is different to mechanical methods for seating the body on the base, such as use of clips or clamping mechanisms, which are subject to wear over time, thereby decreasing the retaining force and/or requiring user adjustment.
(38) Also provided is the use of the sample holder of the present disclosure to separate magnetically labelled particles from non-magnetic medium. In such a use the body is seated on the base.
(39) Also provided are methods for the separation of magnetic particles from a non-magnetic medium as disclosed herein.
(40) The particles to be isolated in a sample may be magnetically labelled using conventional magnetic labelling means. For example, the sample may be mixed with magnetic beads that bind to or coat the target particles of interest during a short incubation. The target substance may be, for example, DNA, RNA, mRNA, proteins, bacteria, viruses, sub-cellular components such as organelles (e.g. nuclei, mitochondria, multivessicular bodies, microvessicles), cells, enzymes, pesticides, hormones or other chemical compounds.
(41) In operation, a sample (typically in solution) and a magnetically labeled particles are initially placed within a sample vessel, e.g. a sample tube 70a. The sample is then typically mixed and/or incubated. After mixing and/or incubation, a sample holder of the present disclosure may be used to isolate the magnetically labeled particles from the non-magnetic sample. The body (for example sample rack 30) is mounted on the magnetic base 20 such that the sample contained within the at least one sample vessel (e.g. sample tube 70a) is subject to a magnetic field, e.g. to a high-gradient magnetic field. During the magnetic separation period, the magnetically labelled particles are attracted by the magnetic field gradient and consequently migrate to a region of the internal surface of the sample vessel adjacent the magnetising portion. The body 30 is magnetically urged towards the base 20 by the magnetic force experienced by the magnetisable member 100. Any non-magnetic material may then be readily removed from the sample vessel, e.g. by decanting.
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(44) In a method of operation of the disclosure, a sample and magnetically labeled particles are initially placed within a sample vessel. The sample is incubated with the particles such that the particles are rosetted. During the incubation period, the sample contained within a sample vessel (for example a sample tube 70a) may be retained by a sample vessel retaining portion 40 of the body. The body can be separate from the magnetic base 20. If the magnetic base comprises one or more electromagnets, the electromagnets may be switched off, in which case the body may be seated on the base during incubation.
(45) During the incubation period, the sample may require mixing to help mix the magnetic labelling means and subsequently magnetically labelled particles within the sample. The body may therefore be configured such that it may be coupled to a mixing apparatus.
(46) After incubation, a sample holder of the present disclosure may be used to isolate the magnetically labelled particles from the non-magnetic sample medium. The body (for example sample rack 30) is mounted on the magnetic base 20 such that the ample contained within the at least one sample vessel (e.g. sample tube 70a) is subject to a magnetic field, e.g. to a high-gradient magnetic field. During the magnetic separation period, the magnetically labelled particles are attracted by the magnetic field and consequently migrate to a region of the internal surface of the sample vessel adjacent the magnetising portion. The body 30 is magnetically urged towards the base 20 by the magnetic force experienced by the magnetisable member 100. This enables the easy removal of the non-magnetic supernatant, possibly using a pipette or by decanting, whilst the magnetically labelled particles are left isolated in the sample vessel. After washing, the target particles may be used in further studies (positive particle isolation). Magnetic separation may also be used to remove unwanted magnetic particles from a suspension such that substances remaining in the supernatant that is now depleted of the target particles can be used (negative isolation).
(47) The magnetic separation device may be configured such that both the main volume and the tip of a sample vessel are subject to a high-gradient magnetic field, whereby the magnetic separation device is suitable for isolating magnetically labeled particles in both larger volumes and smaller volumes of a sample contained in the same sample vessel. For example, the magnetic separating device may process a sample which substantially fills the sample vessel by subjecting both the tip and main volume of a sample vessel, to a high-gradient magnetic field. After isolating the magnetically labelled particles and removing the supernatant, e.g. using a pipette, the magnetically labeled particles may be released/separated from the magnetic labelling means using a release-buffer. This may be achieved by adding a small volume of release-buffer to the isolated magnetically labelled particles remaining in the sample vessel. Hence, the same sample vessel may now contain only a small volume filling substantially the tip of the sample vessel. The magnetic separating device may then be used to subject the tip of the sample vessel to a high-gradient magnetic field such that the magnetic labelling means separate from the particles and migrate to a region of the internal surface of the sample vessel adjacent the magnetising portion. The particles released/separated from the magnetic labelling means may then be removed from the sample vessel, e.g. using a pipette.
(48) The sample holders as herein described are inherently advantageous and as such may also be usefully used with any other suitable magnetic base or means to provide a suitable high-gradient magnetic field.
EXAMPLES
Example 1: Measurement of Magnetic Separation Efficiency
(49) Measurements with a gauss meter indicated that, in the region of the sample vessel retaining portion 40 proximate (e.g. +/1 to 3 mm) to the plane of the magnetisable member 100, the magnetisable member 100 caused a reduction in the magnetic field strength. The experiment of Example 1 was therefore conducted to determine the effect, if any, of this decrease in magnetic field strength on the magnetic separation efficiency of the sample rack.
(50) Magnetic separation efficiency was measured determined with a sample holder of
(51) The assessment of magnetic separation was performed with DYNABEADS MYONE magnetic beads, available from Life Technologies Limited, Inchinnan Business Park, Paisley PA4 9RF, UK. Glass tubes (8 mL volume, 16 mm diameter) were filled with phosphate buffered saline (PBS) 0.1% bovine serum albumin (BSA) buffer containing the magnetic beads. The glass tubes were mixed well and placed in sample rack A and sample rack B. The solution in these glass tubes extended over 15 mm above the plane of the magnetisable member 100 in sample rack A. Thus the solution was subject to magnetic separation in the region of the sample vessel retaining portion 40 where the magnetisable member caused a reduction in the magnetic field strength, which may be expected to effect the efficiency of magnetic separation. Bead collection was monitored, with photographs taken at time intervals 0 (commencement of magnetic separation), 30 and 60 minutes. These results are illustrated in
(52) A review of the figures indicated very similar bead capture when using the sample rack with the magnetisable metal plate (sample rack A) and without the magnetisable member (sample rack B). This indicates that the presence of the magnetisable member in the sample rack has little to no effect on the rate of bead collection compared to a conventional rack, notwithstanding the effect of the magnetisable member 100 on field strength in its vicinity. This demonstrates that sample racks of the invention provide efficient and effective isolation of magnetic particles from a non-magnetic medium.
(53) In an embodiment the magnetisable member may be spatially arranged to be remote from the highest gradient region of the magnetic field, when the body is mounted on the magnetic base. In this arrangement the magnetisable member may have a negligible or no effect on the region of high magnetic field gradient, e.g. the region of the sample holding portion to which magnetically labeled particles would be attracted, when the body is mounted on the magnetic base. Therefore the presence of the magnetisable member may not affect the efficiency of the separation.