TRANSGENIC PLANTS FROM THE BRASSICA spp. GENUS WITH MYCORRHIZATION CAPACITY AND HAVING AN INCREASED PRODUCTIVITY
20220389439 · 2022-12-08
Inventors
- Carlos NICOLÁS RODRÍGUEZ (Salamanca, ES)
- Enrique MONTE VÁZQUEZ (Salamanca, ES)
- Rosa HERMOSA PRIETO (Salamanca, ES)
- Ana ALONSO RAMÍREZ (Salamanca, ES)
- Jorge POVEDA ARIAS (Salamanca, ES)
Cpc classification
C12N15/8261
CHEMISTRY; METALLURGY
C12N15/8247
CHEMISTRY; METALLURGY
A01H17/00
HUMAN NECESSITIES
Y02A40/146
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
International classification
Abstract
The present invention relates to a transgenic plant, preferably of the Brassica spp. genus, comprising in its genome a fungal sequence, preferably belonging to the fungus Trichoderma harzianum, capable of establishing symbiosis with mycorrhizal fungi. Additionally, the transgenic plants of the invention have an increased biomass and higher resistance to abiotic stress. The present invention also provides methods for increasing the resistance to abiotic stress of plants of the Brassica spp. genus, as well as methods for obtaining said transgenic plants with the capacity to establish mycorrhization processes and resistance to abiotic stress and methods for producing foods, feeds or industrial products using the transgenic plant.
Claims
1. A transgenic plant, a reproductive or propagating material, or a cultured plant cell comprising at least one copy of SEQ ID NO: 1.
2. The transgenic plant, the reproductive or propagating material, or the cultured plant cell according to claim 1, characterised in that belongs to the Brassica sp genus.
3. The transgenic plant, the reproductive or propagating material, or the cultured plant cell according to any of claims 1 to 2, characterised in that are selected from the list consisting of: B. napus, B. oleracea, B. rapa and B. nigra.
4. The transgenic plant, the reproductive or propagating material, or the cultured plant cell according to any of claims 1 to 3, characterised in that comprises more than one copy of SEQ ID NO: 1.
5. The transgenic plant, the reproductive or propagating material, or the cultured plant cell according to any of claims 1 to 4, characterised in that has mycorrhization capacity.
6. The transgenic plant, the reproductive or propagating material, or the cultured plant cell according to any of claims 1 to 5, characterised in that has higher tolerance to abiotic stress compared to the corresponding wild-type control plant.
7. The transgenic plant, the reproductive or propagating material, or the cultured plant cell according to any of claims 1 to 6, wherein the abiotic stress is selected from water stress and saline stress.
8. The transgenic plant, the reproductive or propagating material, or the cultured plant cell according to any of claims 1 to 7, characterised in that have an increased biomass, yield and/or oil compare to the corresponding wild-type control plants.
9. The transgenic plant, the reproductive or propagating material, or the cultured plant cell according to any of claims 1 to 8, characterised in that has a decreased concentration of glucosinolates compared to the corresponding wild-type control plants.
10. A cell, silique, seed, progeny or part of the plant according to any of claims 1 to 9, characterised in that comprises SEQ ID NO: 1.
11. The cell, silique, seed, progeny or part of the plant according to claim 10, wherein the parts of the plant are selected from the list consisting of: a leaf, a stem, a flower, an ovary, a fruit or a callus.
12. A use of SEQ ID NO: 1 to induce mycorrhization in plants from Brassica sp. genus.
13. The use according to claim 12, wherein the plants are selected from the list consisting of: B. napus, B. oleracea, B. rapa and B. nigra.
14. The use of SEQ ID NO: 1 for the production of transgenic plants resistant to abiotic stress, and having an increase in biomass and yield compared to the corresponding wild-type control plants.
15. A use of the transgenic plants, the reproductive or propagating material, or the cultured plant cell according to any of claims 1 to 9, and/or of the cells, siliques, seeds, progeny or part of the plant according to claims 10 to 11, for producing foods, feeds, and/or industrial products.
16. The use according to claim 15, wherein the food or feed is selected from the list consisting of: oil, semolina, grain, starch, flour or protein, and the industrial product is selected from the list consisting of: biofuel, fibre, industrial chemicals, a pharmaceutical product or a nutraceutical.
17. A method for increasing the biomass and the yield of a wild-type plant comprising: (a) transforming said wild-type plant with an expression vector comprising the nucleotide sequence SEQ ID NO: 1, and (b) expressing the transformed nucleic acid molecule in said plant.
18. A method for producing a transgenic plant according to any of claims 1 to 9, characterised in that it comprises the following steps: (a) transforming a wild-type plant with an expression vector comprising the nucleotide sequence SEQ ID NO: 1, and (b) expressing the transformed nucleic acid molecule in said plant.
19. The method according to any of claim 17 or 18, wherein the plant belongs to the Brassica spp. genus.
20. The method according to any of claims 17 to 19, characterised in that the plant is selected from the list consisting of: B. napus, B. oleracea, B. rapa and B. nigra.
21. A production method of foods, feeds and/or industrial products comprising: (a) obtaining the plant, reproductive or propagating material, plant cell, according to any of claims 1 to 9, or cell, silique, seed, progeny or part of the plant according to any of claims 10 to 11, and (b) preparing the food, feed and/or industrial product from the plant or part of same of step (a).
22. The method according to claim 21, wherein the food or the feed is selected from the list consisting of: oil, semolina, grain, starch, flour or protein; or the industrial product is selected from the list consisting of: biofuel, fibre, industrial chemicals, a pharmaceutical product or a nutraceutical.
23. An oil production method comprising: (a) obtaining the seeds of the transgenic plants of claims 1 to 9, or of claim 10, (b) grinding the seed of step (a), and (c) extracting the oil from the seed of step (b).
Description
BRIEF DESCRIPTION OF THE FIGURES
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EXAMPLES
[0074] The invention is illustrated below by means of tests conducted by the inventors that demonstrate the effectiveness of the product of the invention.
[0075] Biological Material Used.
[0076] The seeds used belong to the species B. napus spring Jura variety.
[0077] For the mycorrhization tests, a formulation based on mycorrhizal fungi Glomus spp. specifically G. mosseae, G. microagreatum, G. etunicatum, G. intraradices and G. claroideum called MIRATEXT-02 (Mirat S. A., Salamanca, Spain), has been used.
Example 1. Obtaining the Thk1 Transgenic Rapeseed Plants of the Invention
[0078] Cloning by Gateway Technology
[0079] This technology allows introducing an insert of interest in a vector without having to cut with restriction enzymes and binding. Firstly, the oligonucleotides for amplifying the fragment are designed to be cloned by introducing recombination sites attB1 (GGGGACAAGTTTGTACAAAAAAGCAGGCTGC—SEQ ID NO: 3) at the 5′ end and attB2 (GGGGACCACTTTGTACAAGAAAGCTGGGTC—SEQ ID NO: 4) at the 3′ end. Once PCR has been performed, the obtained fragment is introduced in the pDONOR201 plasmid by the Gateway BP Clonase II Enzyme mix (Invitrogen) (introduces segments of DNA with attB sites in a donor vector with attP sites), by recombination, incubating the mixture overnight at 25° C., now being referred to as pENTR201 plasmid. The reaction is stopped by adding proteinase K (it digests keratin) for 10 min at 37° C.
[0080] Next, competent DH5a cells were transformed with the recombination mixture by electroporation. To that end, an aliquot of DH5a cells together with the mixture was placed in a cuvette (0.1 cm wide), and was put in the electroporator (1.8 kV, 1 kW and 25 μF). After that, the bacteria recovered from the cuvette were transferred to LB medium, where they were incubated at 37° C. under stirring a 250 rpm for 1 hour in order to regenerate. After that time, they were seeded on plates with LB medium supplemented with kanamycin, keeping the plates at 37° C. overnight. From the colonies that grew, some colonies were selected and inoculated with LB media supplemented with the same antibiotic, and were kept for 24 h under stirring (250 rpm) and at 37° C. for multiplication.
[0081] The plasmid DNA was extracted with the Nucleospin Plasmid kit (Macherery-Nagel), following the supplier's instructions. This method is based on the use of columns designed for extracting purified plasmid DNA. Next, the concentration of the DNA was determined in the Nanodrop and viewed in agarose gel.
[0082] The plasmid DNAs were sent to be sequenced using the oligos Seq-Gate.L1.F (TCGCGTTAACGCTAGCATGCATGGATCTC— SEQ ID NO: 5) and Seq-Gate.L2.R (GTAACATCAGAGATTTTGAGACAC— SEQ ID NO: 6) designed for the attL1 and attL2 recombination sites which are generated in the pENTR201 vector and flank the DNA sequence introduced.
[0083] Once the sequence of the pENTR201 plasmid has been checked, it was introduced in a DESTINY plasmid (with the right and left border of Agrobacterium tumefaciens). The plasmid used in this process was pKGWFS7. The recombination of the pENTRY and pDEST plasmids was performed with LR clonase (it introduces a gene of interest flanked by attL sites of an ENTRY vector in a destination vector with attR sites), incubating the mixture at 25° C. overnight. The reaction was stopped by adding proteinase K for 10 min at 37° C.
[0084] Next, competent DH5a cells were transformed with the recombination mixture by electroporation (1.8 kV), this time seeding the bacteria obtained in LB medium supplemented with spectinomycin, since this is the resistance the destination plasmid presents. After selecting the transformed colonies three different PCRs were performed to confirm the construct (presence of the cloned fragment and said fragment being in the right direction and in the suitable vector), to that end oligos attB1 (SEQ ID NO: 3) and attB2 (SEQ ID NO: 4), Seq-Gate.L1.F (SEQ ID NO: 5) and Seq-Gate.L2.R (SEQ ID NO: 6), oligos of the cloned fragment SEQ ID No: 8 and SEQ ID No: 9) and another oligo of the destination vector (35S-GTW F) were used. The obtained PCR products were checked in agarose gel, a band being observed only in the first and third PCRs.
[0085] Lastly, the plasmid DNA was extracted and purified with the NucleoSpin Plasmid (Macherey-Nagel) kit, quantifying the product in the Nanodrop and checking it by agarose gel electrophoresis.
[0086] Transformation of A. tumefaciens by Means of Electroporation
[0087] A. tumefaciens competent cells were transformed with the pKGWFS7-Thkel1 construct by electroporation. Between 0.1-0.5 μg of the DNA of the recombinant plasmid were added to a suspension of 0.4 ml of competent cells. Immediately after electroporation, 1 ml of SOC medium (2% bacto tryptone, 0.5% yeast extract, 0.05% NaCl, 2.5 mM KCl, pH 7.0, 10 mM MgCl2 and 20 mM glucose) were added to the cells and they were incubated at 28° C. for 2-3 h. The transformants were selected on plates with solid LB medium supplemented with spectinomycin (50 μg/ml).
[0088] Extraction of Plasmid DNA from A. tumefaciens
[0089] To confirm that the transformed cells contained the suitable construct, plasmids were extracted from a saturated culture of the strains transformed in LB medium with spectinomycin. The cells present in 1 ml of the culture were collected by centrifugation and resuspended in 100 μl of lysis buffer (50 mM glucose, 25 mM Tris-HCl pH 7.5, 10 mM EDTA, 4 mg/ml lysozyme). The suspension was vigorously stirred for 10 min and incubated at room temperature for another 30 min, after which time 150 μl of 3M NaAc (pH 4.8) were added, it was mixed and incubated on ice for 5 min. After centrifuging at 1200 rpm for 5 min, an equal volume of phenol: chloroform (1:1) was added to the supernatant, it was mixed by stirring, and after a final centrifugation the precipitate was resuspended in 50 μl of water.
[0090] Transformation of B. napus by Floral-Dip of A. tumefaciens
[0091] B. napus was transformed by means of A. tumefaciens by the plant (in vivo) infiltration method. This method offers several advantages with respect to methods requiring an in vitro culture process. The transformation of whole plants does not require regeneration, which prevents somaclonal variation, furthermore, the time required for obtaining transformed individuals is reduced.
[0092] A saturated culture of A. tumefaciens was used to inoculate 200 ml of LB medium (3:200). This culture was incubated at 28° C. for 24 h, the cells were collected by centrifugation (3000 rpm, 15 min a 4° C.) and resuspended in 400 ml of infiltration solution (5% sucrose, 0.03% Silwet L-77 detergent (v/v), 0.5× MS medium, 0.044 μM BAP (benzylaminopurine) and acetosyringone (16 mg/l).
[0093] The B. napus plants to be infiltrated were grown in pots until they developed the floral primordia. To inoculate the plants with A. tumefaciens, 400 ml of the suspension of the bacterium were placed in a beaker, where the floral primordia of the branches of each plant were introduced one by one for 2 min, subsequently covering them with a plastic bag to maintain moisture for 2-3 days. When the bacterium is contacted with the floral primordia of B. napus, this infects the tissue. During this period of contact, the bacterium transfers to the tissue the DNA-T of the Ti plasmid, which is integrated in the genetic material of its cells, being transcribed later as if it were its own gene. Once the produced siliques were dried, the seeds were collected. The following step consisted of selecting the transgenic seeds and taking them to homozygosis.
[0094] Selection of Transgenic Seeds
[0095] After sterilizing the surface of the seeds, dormancy was eliminated by stratification for 72 h at 4° C., and they were placed on plates with MS medium supplemented with kanamycin (50 μg/ml). These plates were incubated at 22° C. with a photoperiod of 16 h of light and 8 h of darkness, and a humidity of 70% until the seedlings had completely opened cotyledons (7 days). At this time the transformed seedlings can already be distinguished from the non-transformed seedlings, since latter presented a predominant purple colour due to the accumulation of anthocyanins. The apparently transformed seedlings were transplanted in dirt, where after a few days, those not resistant to kanamycin, overlooked in the preceding step, were discarded since their primary leaves emerged white or purple.
[0096] Molecular Characterisation of the Thkel1 Transgenic Plants
[0097] The plants corresponding to lines T1 were used to check by means of PCR for the presence of the gene Thkel1 in the genome of those lines. To that end, genomic DNA was used together with specific oligonucleotides of the transgene (35S-GTW-F: CTTCGCAAGACCCTTCCTCT—SEQ ID NO: 7; Thkel1-R: GGGGACCACTTTGTACAAGAAAGCTGGGTCTTACAAAAAGTCCAACCTCC—SEQ ID NO: 8; and Thkel1-F: GGGGACAAGTTTGTACAAAAAAGCAGGCTGCATGGCCGCTTCCATCATCT—SEQ ID NO: 9). Next, the confirmed plants continued on to homozygosis.
Example 2. Visual Observation of the Mycorrhization of Thk1 Transgenic Rapeseed Plants
[0098] To demonstrate the mycorrhization process in the Thk1 transgenic rapeseed plants of the invention, the roots thereof were submerged in a 10% KOH solution for 10-13 min at 70-80° C. to increase permeability of their cell walls. Three washes were subsequently performed with distilled water to eliminate the KOH and once more with a 2% acetic acid solution (v/v). Next, the roots were taken to a solution with Sheaffer Skrip ‘Chinese ink’ (5% of ink in 2% acetic acid) for 10 min at 90° C. Lastly, the excess ink was discarded and the roots were rinsed with distilled water, where they were kept until observation. mycorrhization was viewed with the Leica M205 FA stereoscopic microscope and photographs were taken with the Leica DFC 495 photographic camera.
[0099] As can be observed in
[0100] Next, mycorrhization in the transgenic rapeseed plants was quantified. By means of real-time PCR mycorrhization levels of wild-type rapeseed plants and transgenic rapeseed plants which overexpress the gene Thkel1 (SEQ ID NO: 1). As can be observed in
Example 3. Effect of the Mycorrhization on the Production of Transformed Rapeseed Plants of the Invention
[0101] Once the first generation (T1) was obtained from a transgenic rapeseed plant which overexpresses the gene ThKel1 (SEQ ID NO: 1), the effect of mycorrhization on seed production was checked. The productive capacity of B. napus at the level of oleaginous seeds was determined by means of the collection and quantification of the total number of siliques produced by the plant. Next, each of the collected siliques was opened individually and data on the number of seeds formed in each silique was recorded, and groups of 10 seeds were weighed on a precision balance. Lastly, the weight of seeds produced by each plant was calculated. As can be seen in
[0102] Moreover, it can be seen in
[0103] Additionally, the weight of the seeds of the transgenic plants was analysed with respect to the wild-type control plants. The results shown in
[0104] With all this data, an extrapolation has been carried out to calculate the output per hectare expressed in kg (
Example 4. Effect of the Mycorrhization of Thkel1 Transgenic Rapeseed Plants in Response to Different Types of Stress
[0105] 4.1 Saline Stress
[0106] The Thkel1 transgenic rapeseed plants were grown under conditions of saline stress, generated by irrigation with 250 mM NaCl from when the sixth true leaf started to sprout in the plants.
[0107] Moreover, the Thkel2 transgenic plants that had in their genome two copies of the gene Thkel1 (SEQ ID NO: 1) have a higher production of siliques with respect to wild-type control plants, possibly due to greater β-glycosidase activity because of the presence of two copies of the gene Thkel1. However, an increase significant in production in the presence of mycorrhizae was not observed, perhaps because that greater glycosidase activity also hinders colonisation by Glomus spp.
[0108] 4.2 Water Stress—Drought
[0109] Thkel1 transgenic rapeseed plants were grown under conditions of drought by means of the suspending irrigation of said plants when the sixth true leaf started to sprout.
[0110]
[0111] In
[0112] In
Example 5. Measurement of Glucosinolates in the Thkel1 Transgenic Plants of the Invention
[0113] Glucosinolates were measured in the root of Thkel1 transgenic plants and wild-type plants. The results clearly show that the accumulation of indole glucosinolates, specifically 4-methoxyl-13M, 1-methoxy-13M and 4-hydroxy-13M (
[0114] Glucosinolate hydrolysis products, 1-MeO-IGL and 4-MeO-IGL, have been related with the inability of various Cruciferae species to be subject to mycorrhization, indicating the possibility that both compounds are responsible for that impediment. Tong and others (Tong et al., Environmental and Experimental Botany. 2015; 109: 288-295), determined how, in a simultaneous broccoli (Brassica oleracea), sesame and mycorrhizal fungi crop, while the latter was being subjected to mycorrhization, there was both a root and a systemic increase in 1-MeO-IGL and 4-MeO-IGL as a defensive response of the broccoli to mycorrhization, which impeded interaction. Vierheilig and others (Vierheilig et al. New Phytologist. 2000; 146(2): 343-352) qualitatively and quantitatively measured the glucosinolate profiles of different plants belonging to the Brassicales order with and without mycorrhization capacity (in this case several Cruciferae) and observed how the difference between species of Brassicales such as Carica papaya and Tropaelum majus, with mycorrhizal capacity, and Cruciferae without mycorrhization capacity such as B. napus, B. nigra, Sinapis alba or Nastortium officinale, was the presence of these compounds.
Example 6. Analysis of the Oleaginous Quality of the Seeds Obtained from the Thkel1 Transgenic Plants of the Invention
[0115] To determine the quality of the seeds obtained from the transgenic rapeseed plants of the invention compared with that of the seeds obtained from the wild-type rapeseed plants, compounds such as glucosinolates in the roots or fatty acids of nutritional interest present in the seeds were analysed.
[0116] For each root sample replica, 500 μl of 70% methanol supplemented with biochanin A at 1 mg/l (internal standard, IS) were added to 5 mg of tissue lyophilized plant dust. After 10 min of ultrasounds, the samples were centrifuged at 9450 g for 10 min at 4° C. Before UPLC-QTOF-MS (Ultra-High Performance Liquid Chromatography-Quadrupole Time-of-Flight Mass Spectrometry) analysis, the supernatants were filtered through PluriTetraFluoroEthylene (PTFE) syringe filters of 0.2 μm (Whatman International Inc., Kent, United Kingdom). The analyses were carried out following the polar metabolite methodology described below.
[0117] The samples of seeds were weighed (about 50 mg) and ground using a ball mile and glass beads. The resulting oily paste was mixed with 300 μl of pure methanol (liquid chromatography with mass spectrometer or LC/MS grade) complemented with biochanin A at 1 mg/l. Extraction was carried out essentially as in the root samples, but the methanol extracts were combined with 400 μl of ultrapure water and 200 μl of chloroform. The upper layer of water was recovered for polar metabolite analysis, whereas the lower organic layer was dried under vacuum and subsequently reconstituted in pure n-butanol (LC/MS grade) for non-polar metabolite analysis.
[0118] Chromatographic separations were performed in an Acquity SDS system (Waters Corp. Ltd., Milford, Mass.) interconnected to a QTOF Premier of Micromass Ltd. through an ESI source. For all separations, a Luna Omega 1.6u Polar C18 column 100 mm×2.1 mm i.d., 1.6 μm was used (Phenomenex, Torrance, U.S.A.). For data acquisition, the column was kept at 40° C. and the samples at 12° C. to slow degradation.
[0119] To analyse polar metabolites, the samples were injected into the UPLC system in aliquots of 10 μl using the partial loop filling option. The gradient elution program used was 0-2 min, 95% isocratic A [water with 0.1% formic acid (v/v)] and 5% B [acetonitrile with 0.1% formic acid (v/v)]; 2-17 min, gradient 5-95% B; 17-20 min, return to conditions initial; 20-25 min, re-equilibrium period. For acquisition, the flow rate was constant at 300 μl/min.
[0120] To analyse non-polar metabolites, the samples were injected into the UPLC system in aliquots of 5 μl using the partial loop filling option. The gradient elution program used was 0 min, 100% A [water: acetonitrile acid, 15:85 (v/v) with 0.01% formic acid and 0.5 mM CH.sub.3COONH.sub.4] and 0% B [n-butanol with 0.01% formic acid and 0.5 mM CH.sub.3COONH.sub.4]; 0-3 min, 0-10% B; 3-6 min, gradient 10-55% B; 6-9 min, gradient 55-60% B; 9-11 min, gradient 60-70% B; 11-13 return to conditions initial; and re-equilibrium. For acquisition, the flow rate was constant at 300 μl/min.
[0121] For mass spectrometry, the samples were analysed in both negative and positive ionisation modes. Two functions were established in the instrument: in function 1, data was acquired in the 50 to 1000 Da profile mode using an exploration time of 0.2 s and a collision energy of 2 eV; in function 2, The exploration range was the same, but a collision ramp was established between 4 and 65 eV. For all measurements, the capillary electrospray voltage was adjusted to 4 kV, and the cone voltage was adjusted to 25 V. The temperature of the source was kept at 120° C., and the temperature of the desolvation gas was adjusted to 350° ° C. Argon was used as the collision gas and nitrogen was used as the nebulizer, as well as desolvation gas at 60 and 800 I/h, respectively. Exact mass measurements were provided by controlling the lock mass leucine-enkephalin reference compounds.
[0122] The data was processed using Masslynx v.4.1. Raw. The data files were converted to netCDF format using the data bridge of the Masslynx application and were processed using the xcms package. Chromatographic detection of the peaks was performed using the MatchFilter 9 algorithm, applying the following configurations of parameters: snr=3, fwhm=15 s, step=0.01 D, mzdiff=0.1 D, and profmethod=bin. The retention time correction was achieved in three iterations by applying the parameters minfrac=1, bw=30 s, mzwid=0.05 D, span=1, and missing=extra=1 for the first iteration; minfrac=1, bw=10 s, mzwid=0.05 D, span=0.6, and missing=extra=0 for the second iteration; and minfrac=1, bw=5 s, mzwid=0.05 D, span=0.5, and missing=extra=0 for the third iteration. After the final maximum grouping (minfrac=1, bw=5 s) and the filling in of the missing characteristics using the fillPeaks routine in the xcms package, a data matrix consisting of the characteristic×sample was obtained.
[0123] As can be seen in
[0124] With respect to the oleic profile of the oil obtained from the seeds (