ONCOLYTIC VIROTHERAPY AND IMMUNOTHERAPY
20220387530 · 2022-12-08
Assignee
Inventors
- Masataka Suzuki (Houston, TX, US)
- Amanda Rosewell Shaw (Pearland, TX, US)
- Caroline Elaine Porter (Houston, TX, US)
- Norihiro Watanabe (Houston, TX, US)
- Malcolm K. Brenner (Bellaire, TX)
- Andrew Sikora (Houston, TX, US)
Cpc classification
A61K39/395
HUMAN NECESSITIES
C12N7/00
CHEMISTRY; METALLURGY
A61K35/17
HUMAN NECESSITIES
A61K35/17
HUMAN NECESSITIES
C07K2317/73
CHEMISTRY; METALLURGY
A61K35/768
HUMAN NECESSITIES
A61K2300/00
HUMAN NECESSITIES
A61K2300/00
HUMAN NECESSITIES
C12N15/86
CHEMISTRY; METALLURGY
A61K2039/545
HUMAN NECESSITIES
A61P35/00
HUMAN NECESSITIES
C12N2710/10332
CHEMISTRY; METALLURGY
A61K38/1774
HUMAN NECESSITIES
A61K2039/507
HUMAN NECESSITIES
C07K2317/24
CHEMISTRY; METALLURGY
A61K39/395
HUMAN NECESSITIES
C12N2710/10321
CHEMISTRY; METALLURGY
International classification
A61K35/768
HUMAN NECESSITIES
A61K35/17
HUMAN NECESSITIES
A61K39/395
HUMAN NECESSITIES
A61P35/00
HUMAN NECESSITIES
Abstract
The present disclosure concerns combination therapy for cancer thatutilizes (i) an oncolytic virus; (ii) a virus comprising nucleic acid encoding an immunomodulatory factor; and (iii) at least one cell comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen. In particular embodiments, the virus comprises nucleic acid encoding an immunomodulatory factor comprises nucleic acid encoding IL-12 and/or antagonist anti-PD-L1 antibody.
Claims
1. A method of treating a cancer, comprising administering to a subject: (i) an oncolytic virus and a virus comprising nucleic acid encoding IL-12 and antagonist anti-PD-L1 antibody; and (ii) cells comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen.
2. A combination of (i) an oncolytic virus and a virus comprising nucleic acid encoding IL-12 and antagonist anti-PD-L1 antibody, and (ii) cells comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen, for use in a method of treating a cancer.
3. Use of (i) an oncolytic virus and a virus comprising nucleic acid encoding IL-12 and antagonist anti-PD-L1 antibody, and (ii) cells comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen, in the manufacture of a medicament for use in a method of treating a cancer.
4. The method according to claim 1, the combination for use according to claim 2, or the use according to claim 3, wherein the method of treating a cancer comprises administering the oncolytic virus and virus comprising nucleic acid encoding IL-12 and antagonist anti-PD-L1 antibody at a total viral particle dose of 1×10.sup.10, 1×10.sup.11, or 1×10.sup.12 particles.
5. The method, combination or use according to any one of claims 1 to 4, wherein the method of treating a cancer comprises administering a dose of 1×10.sup.6, 1×10.sup.7, or 1×10.sup.8 cells comprising a CAR.
6. The method, combination or use according to any one of claims 1 to 5, wherein the method of treating a cancer comprises: (a) administering the oncolytic virus and virus comprising nucleic acid encoding IL-12 and antagonist anti-PD-L1 antibody; and (b) administering cells comprising a CAR three days after administration according to (a).
7. The method, combination or use according to any one of claims 1 to 6, wherein the method of treating a cancer comprises administering the oncolytic virus and virus comprising nucleic acid encoding IL-12 and antagonist anti-PD-L1 antibody via intratumoral administration.
8. The method, combination or use according to claims 1 to 7, wherein the method of treating a cancer comprises administering the cells comprising a CAR via intravenous administration.
9. The method, combination or use according to claims 1 to 8, wherein the method of treating a cancer comprises administering the oncolytic virus and virus comprising nucleic acid encoding IL-12 and antagonist anti-PD-L1 antibody at a viral particle ratio of oncolytic virus:virus comprising nucleic acid of from 1:0.5 to 1:25.
10. The method, combination or use according to claims 1 to 9, wherein the method of treating a cancer comprises administering the oncolytic virus and virus comprising nucleic acid encoding IL-12 and antagonist anti-PD-L1 antibody at a viral particle ratio of oncolytic virus:virus comprising nucleic acid of 1:1.
11. The method, combination or use according to any one of claims 1 to 10, wherein the oncolytic virus is an oncolytic adenovirus (OncAd).
12. The method, combination or use according to any one of claims 1 to 11, wherein the oncolytic virus is derived from adenovirus 5 (Ad5).
13. The method, combination or use according to any one of claims 1 to 12, wherein the oncolytic virus encodes an E1A protein which displays reduced binding to Rb protein as compared to E1A protein encoded by Ad5.
14. The method, combination or use according to any one of claims 1 to 13, wherein the oncolytic virus encodes an E1A protein lacking the amino acid sequence LTCHEACF (SEQ ID NO:52).
15. The method, combination or use according to any one of claims 1 to 14, wherein the oncolytic virus encodes an E1A protein comprising, or consisting of, the amino acid sequence SEQ ID NO:34.
16. The method, combination or use according to claim any one of claims 1 to 15, wherein the virus comprising nucleic acid encoding IL-12 and antagonist anti-PD-L1 antibody is a helper-dependent adenovirus (HDAd).
17. The method, combination or use according to claim any one of claims 1 to 16, wherein the virus comprising nucleic acid encoding IL-12 and antagonist anti-PD-L1 antibody comprises nucleic acid encoding an enzyme capable of catalysing conversion of a non-toxic factor to a cytotoxic form.
18. The method, combination or use according to claim 17, wherein the enzyme is selected from: thymidine kinase, cytosine deaminase, nitroreductase, cytochrome P450, carboxypeptidase G2, purine nucleoside phosphorylase, horseradish peroxidase and carboxylesterase.
19. The method, combination or use according to any one of claims 1 to 18, wherein the cells comprising a CAR specific for a cancer cell antigen are T cells.
20. The method, combination or use according to any one of claims 1 to 19, wherein the CAR comprises an antigen binding domain capable of specific binding to HER2.
21. The method, combination or use according to any one of claims 1 to 20, wherein the CAR comprises an antigen-binding domain comprising: a VL domain comprising: LC-CRD1: SEQ ID NO:10; LC-CRD2: SEQ ID NO:11; LC-CRD3: SEQ ID NO:12; and a VH domain comprising: HC-CRD1: SEQ ID NO:13; HC-CRD2: SEQ ID NO:14; HC-CRD3: SEQ ID NO:15; or a VL domain comprising: LC-CRD1: SEQ ID NO:18; LC-CRD2: SEQ ID NO:19; LC-CRD3: SEQ ID NO:20; and a VH domain comprising: HC-CRD1: SEQ ID NO:21; HC-CRD2: SEQ ID NO:22; HC-CRD3: SEQ ID NO:23; or a VL domain comprising: LC-CRD1: SEQ ID NO:26; LC-CRD2: SEQ ID NO:27; LC-CRD3: SEQ ID NO:28; and a VH domain comprising: HC-CRD1: SEQ ID NO:29; HC-CRD2: SEQ ID NO:30; HC-CRD3: SEQ ID NO:31; or a VL domain comprising: LC-CRD1: SEQ ID NO:57; LC-CRD2: SEQ ID NO:58; LC-CRD3: SEQ ID NO:59; and a VH domain comprising: HC-CRD1: SEQ ID NO:60; HC-CRD2: SEQ ID NO:61; HC-CRD3: SEQ ID NO:62.
22. The method, combination or use according to any one of claims 1 to 21, wherein the CAR comprises an antigen binding domain comprising: a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:16 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:17; or a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:24 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:25; or a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:32 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:33; or a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:63 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:64.
23. The method, combination or use according to any one of claims 1 to 22, wherein the method of treating a cancer comprises: (a) isolating at least one cell from a subject; (b) modifying the at least one cell to express or comprise a CAR specific for a cancer cell antigen, or a nucleic acid encoding a CAR specific for a cancer cell antigen, (c) optionally expanding the modified at least one cell, and; (d) administering the modified at least one cell to a subject.
24. The method, combination or use according to any one of claims 1 to 23, wherein the cancer expresses HER2.
25. The method, combination or use according to any one of claims 1 to 24, wherein the cancer is selected from head and neck cancer, head and neck squamous cell carcinoma, nasopharyngeal carcinoma (NPC), breast cancer, bladder cancer, cervical carcinoma (CC), oropharyngeal carcinoma (OPC), oesophageal cancer, colorectal cancer, gastric carcinoma (GC), hepatocellular carcinoma (HCC), salivary gland cancer, lung cancer, and pancreatic adenocarcinoma.
26. The method, combination or use according to any one of claims 1 to 25, wherein the cancer comprises a HER2-positive tumour.
Description
BRIEF DESCRIPTION OF THE FIGURES
[0630] Embodiments and studies illustrating the principles of the disclosure will now be discussed with reference to the accompanying figures.
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NUMBERED STATEMENTS OF DISCLOSURE
[0660] Following numbered paragraphs (paras) describe particular aspects and embodiments of the present disclosure:
[0661] 1. A method of treating a cancer, comprising administering to a subject: [0662] (i) an oncolytic virus; [0663] (ii) a virus comprising nucleic acid encoding an immunomodulatory factor; and [0664] (iii) at least one cell comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen.
[0665] 2. The method of para 1, wherein the oncolytic virus is an oncolytic adenovirus (OncAd).
[0666] 3. The method of para 1 or para 2, wherein the oncolytic virus is derived from adenovirus 5 (Ad5).
[0667] 4. The method of any one of paras 1 to 3, wherein the oncolytic virus encodes an E1A protein which displays reduced binding to Rb protein as compared to E1A protein encoded by Ad5.
[0668] 5. The method of any one of paras 1 to 4, wherein the oncolytic virus encodes an E1A protein lacking the amino acid sequence LTCHEACF (SEQ ID NO:52).
[0669] 6. The method of any one of paras 1 to 5, wherein the oncolytic virus encodes an E1A protein comprising, or consisting of, the amino acid sequence SEQ ID NO:34.
[0670] 7. The method of any one of paras 1 to 6, wherein the oncolytic virus comprises nucleic acid having one or more binding sites for one or more transcription factors.
[0671] 8. The method of any one of paras 1 to 7, wherein the oncolytic virus comprises nucleic acid having one or more binding sites for STAT1.
[0672] 9. The method of any one of paras 1 to 8, wherein the virus comprising nucleic acid encoding an immunomodulatory factor is a helper-dependent adenovirus (HDAd).
[0673] 10. The method of any one of paras 1 to 9, wherein the immunomodulatory factor is selected from: an agonist of an effector immune response or antagonist of an immunoregulatory response.
[0674] 11. The method of any one of paras 1 to 10, wherein the virus comprising nucleic acid encoding an immunomodulatory factor comprises nucleic acid encoding IL-12 and/or antagonist anti-PD-L1 antibody.
[0675] 12. The method of any one of paras 1 to 11, wherein the virus comprising nucleic acid encoding an immunomodulatory factor comprises nucleic acid encoding a thymidine kinase.
[0676] 13. The method of any one of paras 1 to 12, wherein the at least one cell comprising a CAR specific for a cancer cell antigen is a T cell.
[0677] 14. The method of any one of paras 1 to 13, wherein the CAR comprises an antigen binding domain capable of specific binding to HER2.
[0678] 15. The method of any one of paras 1 to 14, wherein the CAR comprises an antigen binding domain comprising: [0679] a VL domain comprising: [0680] LC-CRD1: SEQ ID NO:10; [0681] LC-CRD2: SEQ ID NO:11; [0682] LC-CRD3: SEQ ID NO:12; [0683] and a VH domain comprising: [0684] HC-CRD1: SEQ ID NO:13; [0685] HC-CRD2: SEQ ID NO:14; [0686] HC-CRD3: SEQ ID NO:15;
[0687] or [0688] a VL domain comprising: [0689] LC-CRD1: SEQ ID NO:18; [0690] LC-CRD2: SEQ ID NO:19; [0691] LC-CRD3: SEQ ID NO:20; [0692] and a VH domain comprising: [0693] HC-CRD1: SEQ ID NO:21; [0694] HC-CRD2: SEQ ID NO:22; [0695] HC-CRD3: SEQ ID NO:23;
[0696] or [0697] a VL domain comprising: [0698] LC-CRD1: SEQ ID NO:26; [0699] LC-CRD2: SEQ ID NO:27; [0700] LC-CRD3: SEQ ID NO:28; [0701] and a VH domain comprising: [0702] HC-CRD1: SEQ ID NO:29; [0703] HC-CRD2: SEQ ID NO:30; [0704] HC-CRD3: SEQ ID NO:31.
[0705] 16. The method of any one of paras 1 to 15, wherein the CAR comprises an antigen binding domain comprising: [0706] a VL comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:16 and a VH comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:17;
[0707] or [0708] a VL comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:24 and a VH comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:25;
[0709] or [0710] a VL comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:32 and a VH comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:33.
[0711] 17. The method of any one of paras 1 to 16, wherein the method additionally comprises: [0712] (a) isolating at least one cell from a subject; [0713] (b) modifying the at least one cell to express or comprise a CAR specific for a cancer cell antigen, or a nucleic acid encoding a CAR specific for a cancer cell antigen, [0714] (c) optionally expanding the modified at least one cell, and; [0715] (d) administering the modified at least one cell to a subject.
[0716] 18. The method of any one of paras 1 to 17, wherein the cancer is selected from head and neck cancer, nasopharyngeal carcinoma (NPC), cervical carcinoma (CC), oropharyngeal carcinoma (OPC), gastric carcinoma (GC), hepatocellular carcinoma (HCC) and lung cancer.
[0717] 19. An oncolytic adenovirus (OncAd) encoding an E1A protein comprising, or consisting of, the amino acid sequence SEQ ID NO:34.
[0718] 20. An oncolytic adenovirus (OncAd) comprising nucleic acid having one or more binding sites for STAT1.
[0719] 21. The OncAd according to para 20, wherein the OncAd comprises a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:51 or an equivalent sequence as a result of codon degeneracy.
[0720] 22. A helper-dependent adenovirus (HDAd) comprising nucleic acid encoding IL-12 and/or antagonist anti-PD-L1 antibody.
[0721] 23. The HDAd according to para 22, wherein the HDAd additionally comprises nucleic acid encoding a thymidine kinase.
[0722] 24. A chimeric antigen receptor (CAR) comprising an antigen binding domain comprising: [0723] a VL domain comprising: [0724] LC-CRD1: SEQ ID NO:10; [0725] LC-CRD2: SEQ ID NO:11; [0726] LC-CRD3: SEQ ID NO:12; [0727] and a VH domain comprising: [0728] HC-CRD1: SEQ ID NO:13; [0729] HC-CRD2: SEQ ID NO:14; [0730] HC-CRD3: SEQ ID NO:15;
[0731] or [0732] a VL domain comprising: [0733] LC-CRD1: SEQ ID NO:18; [0734] LC-CRD2: SEQ ID NO:19; [0735] LC-CRD3: SEQ ID NO:20; [0736] and a VH domain comprising: [0737] HC-CRD1: SEQ ID NO:21; [0738] HC-CRD2: SEQ ID NO:22; [0739] HC-CRD3: SEQ ID NO:23;
[0740] or [0741] a VL domain comprising: [0742] LC-CRD1: SEQ ID NO:26; [0743] LC-CRD2: SEQ ID NO:27; [0744] LC-CRD3: SEQ ID NO:28; [0745] and a VH domain comprising: [0746] HC-CRD1: SEQ ID NO:29; [0747] HC-CRD2: SEQ ID NO:30; [0748] HC-CRD3: SEQ ID NO:31.
[0749] 25. The CAR according to para 24, wherein the CAR comprises an antigen binding domain comprising: [0750] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:16 and a VH comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:17;
[0751] or [0752] a VL comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:24 and a VH comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:25;
[0753] or [0754] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:32 and a VH comprising, or consisting of or consisting essentially of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:33.
[0755] 26. A nucleic acid, optionally isolated or man-made, encoding the oncolytic adenovirus (OncAd) according to any one of paras 19 to 21, the helper-dependent adenovirus (HDAd) according to para 22 or para 23, or the chimeric antigen receptor (CAR) according to para 24 or para 25.
[0756] 27. A cell comprising the oncolytic adenovirus (OncAd) according to any one of paras 19 to 21, the helper-dependent adenovirus (HDAd) according to para 22 or para 23, the chimeric antigen receptor (CAR) according to para 24 or para 25, or the nucleic acid according to para 26, optionally wherein the cell is man-made and not found in nature.
[0757] 28. A pharmaceutical composition comprising the oncolytic adenovirus (OncAd) according to any one of paras 19 to 21, the helper-dependent adenovirus (HDAd) according to para 22 or para 23, the chimeric antigen receptor (CAR) according to para 24 or para 25, the nucleic acid according to para 26 or the cell according to para 27 and a pharmaceutically acceptable carrier, diluent, excipient or adjuvant.
[0758] 29. A method of treating cancer comprising administering to a subject the oncolytic adenovirus (OncAd) according to any one of paras 19 to 21, the helper-dependent adenovirus (HDAd) according to para 22 or para 23, the chimeric antigen receptor (CAR) according to para 24 or para 25, the nucleic acid according to para 26, the cell according to para 27 or the pharmaceutical composition according to para 28.
[0759] 30. The oncolytic adenovirus (OncAd) according to any one of paras 19 to 21, the helper-dependent adenovirus (HDAd) according to para 22 or para 23, the chimeric antigen receptor (CAR) according to para 24 or para 25, the nucleic acid according to para 26, the cell according to para 27 or the pharmaceutical composition according to para 28 for use in a method of treating a cancer.
[0760] 31. Use of the oncolytic adenovirus (OncAd) according to any one of paras 19 to 21, the helper-dependent adenovirus (HDAd) according to para 22 or para 23, the chimeric antigen receptor (CAR) according to para 24 or para 25, the nucleic acid according to para 26, the cell according to para 27 or the pharmaceutical composition according to para 28 in the manufacture of a medicament for treating a cancer.
[0761] 32. The method, the use or the use according to any one of paras 29 to 31, wherein the cancer is selected from head and neck cancer, nasopharyngeal carcinoma (NPC), cervical carcinoma (CC), oropharyngeal carcinoma (OPC), gastric carcinoma (GC), hepatocellular carcinoma (HCC) and lung cancer.
[0762] 33. A kit of parts comprising a predetermined quantity of the oncolytic adenovirus (OncAd) according to any one of paras 19 to 21, the helper-dependent adenovirus (HDAd) according to para 22 or para 23, the chimeric antigen receptor (CAR) according to para 24 or para 25, the nucleic acid according to para 26, the cell according to para 27 or the pharmaceutical composition according to para 28.
[0763] 1A. A method of treating a cancer, comprising administering to a subject: [0764] (i) an oncolytic virus; [0765] (ii) a virus comprising nucleic acid encoding an immunomodulatory factor; and [0766] (iii) at least one cell comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen.
[0767] 2A. A combination of (i) an oncolytic virus, (ii) a virus comprising nucleic acid encoding an immunomodulatory factor, and (iii) at least one cell comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen, for use in a method of treating a cancer.
[0768] 3A. Use of (i) an oncolytic virus, (ii) a virus comprising nucleic acid encoding an immunomodulatory factor, and (iii) at least one cell comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen, in the manufacture of a medicament for use in a method of treating a cancer.
[0769] 4A. A method of treating a cancer, comprising administering to a subject: [0770] (i) an oncolytic virus; and [0771] (ii) at least one cell comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen.
[0772] 5A. A combination of (i) an oncolytic virus, and (ii) at least one cell comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen, for use in a method of treating a cancer.
[0773] 6A. Use of (i) an oncolytic virus, and (ii) at least one cell comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen, in the manufacture of a medicament for use in a method of treating a cancer.
[0774] 7A. The method according to para 1A or para 4A, the combination according to para 2A or para 5A, or the use according to para 3A or para 6A, wherein the cell comprising a CAR is specific for the oncolytic virus.
[0775] 8A. A method of treating a cancer, comprising administering to a subject: [0776] (i) an oncolytic virus; and [0777] (ii) at least one immune cell specific for the oncolytic virus.
[0778] 9A. A combination of (i) an oncolytic virus, and (ii) at least one immune cell specific for the oncolytic virus, for use in a method of treating a cancer.
[0779] 10A. Use of (i) an oncolytic virus, and (ii) at least one immune cell specific for the oncolytic virus, in the manufacture of a medicament for use in a method of treating a cancer.
[0780] 11A. The method, combination or use according to any one of paras 1A to 10A, wherein the oncolytic virus is an oncolytic adenovirus (OncAd).
[0781] 12A. The method, combination or use according to any one of paras 1A to 11A, wherein the oncolytic virus is derived from adenovirus 5 (Ad5).
[0782] 13A. The method, combination or use according to any one of paras 1A to 12A, wherein the oncolytic virus encodes an E1A protein which displays reduced binding to Rb protein as compared to E1A protein encoded by Ad5.
[0783] 14A. The method, combination or use according to any one of paras 1A to 13A, wherein the oncolytic virus encodes an E1A protein lacking the amino acid sequence LTCHEACF (SEQ ID NO:52).
[0784] 15A. The method, combination or use according to any one of paras 1A to 14A, wherein the oncolytic virus encodes an E1A protein comprising, or consisting of, the amino acid sequence SEQ ID NO:34.
[0785] 16A. The method, combination or use according to any one of paras 1A to 15A, wherein the oncolytic virus comprises nucleic acid having one or more binding sites for one or more transcription factors.
[0786] 17A. The method, combination or use according to any one of paras 1A to 16A, wherein the oncolytic virus comprises nucleic acid having one or more binding sites for STAT1.
[0787] 18A. The method, combination or use according to any one of paras 1A to 7A, or 11A to 17A, wherein the at least one cell comprising a CAR specific for a cancer cell antigen is a T cell.
[0788] 19A. The method, combination or use according to any one of paras 1A to 7A, or 11A to 18A, wherein the CAR comprises an antigen binding domain capable of specific binding to HER2.
[0789] 20A. The method, combination or use according to any one of paras 1A to 7A, or 11A to 19A, wherein the CAR comprises an antigen-binding domain comprising: [0790] a VL domain comprising: [0791] LC-CRD1: SEQ ID NO:10; [0792] LC-CRD2: SEQ ID NO:11; [0793] LC-CRD3: SEQ ID NO:12; [0794] and a VH domain comprising: [0795] HC-CRD1: SEQ ID NO:13; [0796] HC-CRD2: SEQ ID NO:14; [0797] HC-CRD3: SEQ ID NO:15;
[0798] or [0799] a VL domain comprising: [0800] LC-CRD1: SEQ ID NO:18; [0801] LC-CRD2: SEQ ID NO:19; [0802] LC-CRD3: SEQ ID NO:20; [0803] and a VH domain comprising: [0804] HC-CRD1: SEQ ID NO:21; [0805] HC-CRD2: SEQ ID NO:22; [0806] HC-CRD3: SEQ ID NO:23;
[0807] or [0808] a VL domain comprising: [0809] LC-CRD1: SEQ ID NO:26; [0810] LC-CRD2: SEQ ID NO:27; [0811] LC-CRD3: SEQ ID NO:28; [0812] and a VH domain comprising: [0813] HC-CRD1: SEQ ID NO:29; [0814] HC-CRD2: SEQ ID NO:30; [0815] HC-CRD3: SEQ ID NO:31;
[0816] or [0817] a VL domain comprising: [0818] LC-CRD1: SEQ ID NO:57; [0819] LC-CRD2: SEQ ID NO:58; [0820] LC-CRD3: SEQ ID NO:59; [0821] and a VH domain comprising: [0822] HC-CRD1: SEQ ID NO:60; [0823] HC-CRD2: SEQ ID NO:61; [0824] HC-CRD3: SEQ ID NO:62.
[0825] 21A. The method, combination or use according to any one of paras 1A to 7A, or 11A to 20A, wherein the CAR comprises an antigen binding domain comprising: [0826] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:16 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:17;
[0827] or [0828] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:24 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:25;
[0829] or [0830] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:32 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:33;
[0831] or [0832] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:63 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:64.
[0833] 22A. The method, combination or use according to any one of paras 1A to 3A, or 11A to 21A, wherein the virus comprising nucleic acid encoding an immunomodulatory factor is a helper-dependent adenovirus (HDAd).
[0834] 23A. The method, combination or use according to any one of paras 1A to 3A, or 11A to 22A, wherein the immunomodulatory factor is selected from: an agonist of an effector immune response or antagonist of an immunoregulatory response.
[0835] 24A. The method, combination or use according to any one of paras 1A to 3A, or 11A to 23A, wherein the virus comprising nucleic acid encoding an immunomodulatory factor comprises nucleic acid encoding IL-12 and/or antagonist anti-PD-L1 antibody.
[0836] 25A. The method, combination or use according to any one of paras 1A to 3A, or 11A to 24A, wherein the virus comprising nucleic acid encoding an immunomodulatory factor comprises nucleic acid encoding an enzyme capable of catalysing conversion of a non-toxic factor to a cytotoxic form.
[0837] 26A. The method, combination or use according to para 25A, wherein the enzyme is selected from: thymidine kinase, cytosine deaminase, nitroreductase, cytochrome P450, carboxypeptidase G2, purine nucleoside phosphorylase, horseradish peroxidase and carboxylesterase.
[0838] 27A. The method, combination or use according to any one of paras 1A to 26A, wherein the method of treating a cancer comprises: [0839] (a) isolating at least one cell from a subject; [0840] (b) modifying the at least one cell to express or comprise a CAR specific for a cancer cell antigen, or a nucleic acid encoding a CAR specific for a cancer cell antigen, [0841] (c) optionally expanding the modified at least one cell, and; [0842] (d) administering the modified at least one cell to a subject.
[0843] 28A. The method, combination or use according to any one of paras 1A to 27A, wherein the method of treating a cancer comprises: [0844] (a) isolating immune cells from a subject; [0845] (b) generating or expanding a population of immune cells specific for an oncolytic virus by a method comprising: stimulating the immune cells by culture in the presence of antigen presenting cells (APCs) presenting a peptide of the oncolytic virus, and; [0846] (c) administering at least one immune cell specific for the oncolytic virus to a subject.
[0847] 29A. The method, combination or use according to any one of paras 1A to 28A, wherein the cancer is selected from head and neck cancer, nasopharyngeal carcinoma (NPC), cervical carcinoma (CC), oropharyngeal carcinoma (OPC), gastric carcinoma (GC), hepatocellular carcinoma (HCC) and lung cancer.
[0848] 30A. An oncolytic adenovirus (OncAd) encoding an E1A protein comprising, or consisting of, the amino acid sequence SEQ ID NO:34.
[0849] 31A. An oncolytic adenovirus (OncAd) comprising nucleic acid having one or more binding sites for STAT1.
[0850] 32A. An oncolytic adenovirus (OncAd) comprising a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:51 or an equivalent sequence as a result of codon degeneracy.
[0851] 33A. An oncolytic adenovirus (OncAd) comprising a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:55 or an equivalent sequence as a result of codon degeneracy.
[0852] 34A. A helper-dependent adenovirus (HDAd) comprising nucleic acid encoding IL-12 and/or antagonist anti-PD-L1 antibody.
[0853] 35A. The HDAd according to para 34A, wherein the HDAd additionally comprises nucleic acid encoding an enzyme capable of catalysing conversion of a non-toxic factor to a cytotoxic form.
[0854] 36A. The HDAd according to para 34A or para 35A, wherein the enzyme is selected from: [0855] thymidine kinase, cytosine deaminase, nitroreductase, cytochrome P450, carboxypeptidase G2, purine nucleoside phosphorylase, horseradish peroxidase and carboxylesterase.
[0856] 37A. A chimeric antigen receptor (CAR) comprising an antigen binding domain comprising: [0857] a VL domain comprising: [0858] LC-CRD1: SEQ ID NO:10; [0859] LC-CRD2: SEQ ID NO:11; [0860] LC-CRD3: SEQ ID NO:12; [0861] and a VH domain comprising: [0862] HC-CRD1: SEQ ID NO:13; [0863] HC-CRD2: SEQ ID NO:14; [0864] HC-CRD3: SEQ ID NO:15;
[0865] or [0866] a VL domain comprising: [0867] LC-CRD1: SEQ ID NO:18; [0868] LC-CRD2: SEQ ID NO:19; [0869] LC-CRD3: SEQ ID NO:20; [0870] and a VH domain comprising: [0871] HC-CRD1: SEQ ID NO:21; [0872] HC-CRD2: SEQ ID NO:22; [0873] HC-CRD3: SEQ ID NO:23;
[0874] or [0875] a VL domain comprising: [0876] LC-CRD1: SEQ ID NO:26; [0877] LC-CRD2: SEQ ID NO:27; [0878] LC-CRD3: SEQ ID NO:28; [0879] and a VH domain comprising: [0880] HC-CRD1: SEQ ID NO:29; [0881] HC-CRD2: SEQ ID NO:30; [0882] HC-CRD3: SEQ ID NO:31;
[0883] or [0884] a VL domain comprising: [0885] LC-CRD1: SEQ ID NO:57; [0886] LC-CRD2: SEQ ID NO:58; [0887] LC-CRD3: SEQ ID NO:59; [0888] and a VH domain comprising: [0889] HC-CRD1: SEQ ID NO:60; [0890] HC-CRD2: SEQ ID NO:61; [0891] HC-CRD3: SEQ ID NO:62.
[0892] 38A. The CAR according to para 37A, wherein the CAR comprises an antigen binding domain comprising: [0893] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:16 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:17;
[0894] or [0895] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:24 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:25;
[0896] or [0897] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:32 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:33
[0898] or [0899] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:63 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:64.
[0900] 39A. A nucleic acid, or a plurality of nucleic acids, optionally isolated or man-made, encoding the oncolytic adenovirus (OncAd) according to any one of para 30A to 33A, the helper-dependent adenovirus (HDAd) according to any one of paras 34A to 36A, or the chimeric antigen receptor (CAR) according to para 37A or para 38A.
[0901] 40A. A cell comprising the oncolytic adenovirus (OncAd) according to any one of para 30A to 33A, the helper-dependent adenovirus (HDAd) according to any one of paras 34A to 36A, the chimeric antigen receptor (CAR) according to para 37A or para 38A, or the nucleic acid or plurality of nucleic acids according to para 39A.
[0902] 41A. A pharmaceutical composition comprising the oncolytic adenovirus (OncAd) according to any one of paras 30A to 33A, the helper-dependent adenovirus (HDAd) according to any one of paras 34A to 36A, the chimeric antigen receptor (CAR) according to para 37A or para 38A, the nucleic acid or plurality of nucleic acids according to para 39A, or the cell according to para 40A, and a pharmaceutically acceptable carrier, diluent, excipient or adjuvant.
[0903] 42A. A method of treating cancer comprising administering to a subject the oncolytic adenovirus (OncAd) according to any one of paras 30A to 33A, the helper-dependent adenovirus (HDAd) according to any one of paras 34A to 36A, the chimeric antigen receptor (CAR) according to para 37A or para 38A, the nucleic acid or plurality of nucleic acids according to para 39A, the cell according to para 40A, or the pharmaceutical composition according to para 41A.
[0904] 43A. The oncolytic adenovirus (OncAd) according to any one of paras 30A to 33A, the helper-dependent adenovirus (HDAd) according to any one of paras 34A to 36A, the chimeric antigen receptor (CAR) according to para 37A or para 38A, the nucleic acid or plurality of nucleic acids according to para 39A, the cell according to para 40A, or the pharmaceutical composition according to para 41A, for use in a method of treating a cancer.
[0905] 44A. Use of the oncolytic adenovirus (OncAd) according to any one of paras 30A to 33A, the helper-dependent adenovirus (HDAd) according to any one of paras 34A to 36A, the chimeric antigen receptor (CAR) according to para 37A or para 38A, the nucleic acid or plurality of nucleic acids according to para 39A, the cell according to para 40A, or the pharmaceutical composition according to para 41A, in the manufacture of a medicament for treating a cancer.
[0906] 45A. The method according to para 42A, the OncAd, HDAd, CAR, nucleic acid or plurality of nucleic acids, cell, or pharmaceutical composition for use according to para 43A, or the use according to para 44A, wherein the cancer is selected from head and neck cancer, nasopharyngeal carcinoma (NPC), cervical carcinoma (CC), oropharyngeal carcinoma (OPC), gastric carcinoma (GC), hepatocellular carcinoma (HCC) and lung cancer.
[0907] 46A. A kit of parts comprising a predetermined quantity of the oncolytic adenovirus (OncAd) according to any one of paras 30A to 33A, the helper-dependent adenovirus (HDAd) according to any one of paras 34A to 36A, the chimeric antigen receptor (CAR) according to para 37A or para 38A, the nucleic acid or plurality of nucleic acids according to para 39A, the cell according to para 40A, or the pharmaceutical composition according to para 41A.
[0908] 1B. A method of treating a cancer, comprising administering to a subject: [0909] (i) an oncolytic virus; and [0910] (ii) at least one cell comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen.
[0911] 2B. A combination of (i) an oncolytic virus, and (ii) at least one cell comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen, for use in a method of treating a cancer.
[0912] 3B. Use of (i) an oncolytic virus, and (ii) at least one cell comprising a chimeric antigen receptor (CAR) specific for a cancer cell antigen, in the manufacture of a medicament for use in a method of treating a cancer.
[0913] 4B. The method according to para 1B, the combination according to para 2B, or the use according to para 3B, wherein the cell comprising a CAR is specific for the oncolytic virus.
[0914] 5B. A method of treating a cancer, comprising administering to a subject: [0915] (i) an oncolytic virus; and [0916] (ii) at least one immune cell specific for the oncolytic virus.
[0917] 6B. A combination of (i) an oncolytic virus, and (ii) at least one immune cell specific for the oncolytic virus, for use in a method of treating a cancer.
[0918] 7B. Use of (i) an oncolytic virus, and (ii) at least one immune cell specific for the oncolytic virus, in the manufacture of a medicament for use in a method of treating a cancer.
[0919] 8B. The method, combination or use according to any one of paras 1B to 7B, wherein the oncolytic virus is an oncolytic adenovirus (OncAd).
[0920] 9B. The method, combination or use according to any one of paras 1B to 8B, wherein the oncolytic virus is derived from adenovirus 5 (Ad5).
[0921] 10B. The method, combination or use according to any one of paras 1B to 9B, wherein the oncolytic virus encodes an E1A protein which displays reduced binding to Rb protein as compared to E1A protein encoded by Ad5.
[0922] 11B. The method, combination or use according to any one of paras 1B to 10B, wherein the oncolytic virus encodes an E1A protein lacking the amino acid sequence LTCHEACF (SEQ ID NO:52).
[0923] 12B. The method, combination or use according to any one of paras 1B to 11B, wherein the oncolytic virus encodes an E1A protein comprising, or consisting of, the amino acid sequence SEQ ID NO:34.
[0924] 13B. The method, combination or use according to any one of paras 1B to 12B, wherein the oncolytic virus comprises nucleic acid having one or more binding sites for one or more transcription factors.
[0925] 14B. The method, combination or use according to any one of paras 1B to 13B, wherein the oncolytic virus comprises nucleic acid having one or more binding sites for STAT1.
[0926] 15B. The method, combination or use according to any one of paras 1B to 4B, or 8B to 14B, wherein the at least one cell comprising a CAR specific for a cancer cell antigen is a T cell.
[0927] 16B. The method, combination or use according to any one of paras 1B to 4B, or 8B to 15B, wherein the CAR comprises an antigen binding domain capable of specific binding to HER2.
[0928] 17B. The method, combination or use according to any one of paras 1B to 4B, or 8B to 16B, wherein the CAR comprises an antigen-binding domain comprising: [0929] a VL domain comprising: [0930] LC-CRD1: SEQ ID NO:10; [0931] LC-CRD2: SEQ ID NO:11; [0932] LC-CRD3: SEQ ID NO:12; [0933] and a VH domain comprising: [0934] HC-CRD1: SEQ ID NO:13; [0935] HC-CRD2: SEQ ID NO:14; [0936] HC-CRD3: SEQ ID NO:15;
[0937] or [0938] a VL domain comprising: [0939] LC-CRD1: SEQ ID NO:18; [0940] LC-CRD2: SEQ ID NO:19; [0941] LC-CRD3: SEQ ID NO:20; [0942] and a VH domain comprising: [0943] HC-CRD1: SEQ ID NO:21; [0944] HC-CRD2: SEQ ID NO:22; [0945] HC-CRD3: SEQ ID NO:23;
[0946] or [0947] a VL domain comprising: [0948] LC-CRD1: SEQ ID NO:26; [0949] LC-CRD2: SEQ ID NO:27; [0950] LC-CRD3: SEQ ID NO:28; [0951] and a VH domain comprising: [0952] HC-CRD1: SEQ ID NO:29; [0953] HC-CRD2: SEQ ID NO:30; [0954] HC-CRD3: SEQ ID NO:31;
[0955] or [0956] a VL domain comprising: [0957] LC-CRD1: SEQ ID NO:57; [0958] LC-CRD2: SEQ ID NO:58; [0959] LC-CRD3: SEQ ID NO:59; [0960] and a VH domain comprising: [0961] HC-CRD1: SEQ ID NO:60; [0962] HC-CRD2: SEQ ID NO:61; [0963] HC-CRD3: SEQ ID NO:62.
[0964] 18B. The method, combination or use according to any one of paras 1B to 4B, or 8B to 17B, wherein the CAR comprises an antigen binding domain comprising: [0965] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:16 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:17;
[0966] or [0967] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:24 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:25;
[0968] or [0969] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:32 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:33;
[0970] or [0971] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:63 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:64.
[0972] 19B. The method, combination or use according to any one of paras 1B to 18B wherein the method, combination or use further comprises a virus comprising nucleic acid encoding an immunomodulatory factor.
[0973] 20B. The method, combination or use according to para 19B wherein the virus comprising nucleic acid encoding an immunomodulatory factor is a helper-dependent adenovirus (HDAd).
[0974] 21B. The method, combination or use according to para 19B or 20B, wherein the immunomodulatory factor is selected from: an agonist of an effector immune response or antagonist of an immunoregulatory response.
[0975] 22B. The method, combination or use according to any one of paras 19B to 21B, wherein the virus comprising nucleic acid encoding an immunomodulatory factor comprises nucleic acid encoding IL-12 and/or antagonist anti-PD-L1 antibody.
[0976] 23B. The method, combination or use according to any one of paras 19B to 22B, wherein the virus comprising nucleic acid encoding an immunomodulatory factor comprises nucleic acid encoding an enzyme capable of catalysing conversion of a non-toxic factor to a cytotoxic form.
[0977] 24B. The method, combination or use according to para 23B, wherein the enzyme is selected from: thymidine kinase, cytosine deaminase, nitroreductase, cytochrome P450, carboxypeptidase G2, purine nucleoside phosphorylase, horseradish peroxidase and carboxylesterase.
[0978] 25B. The method, combination or use according to any one of paras 1B to 24B, wherein the method of treating a cancer comprises: [0979] (a) isolating at least one cell from a subject; [0980] (b) modifying the at least one cell to express or comprise a CAR specific for a cancer cell antigen, or a nucleic acid encoding a CAR specific for a cancer cell antigen, [0981] (c) optionally expanding the modified at least one cell, and; [0982] (d) administering the modified at least one cell to a subject.
[0983] 26B. The method, combination or use according to any one of paras 1B to 25B, wherein the method of treating a cancer comprises: [0984] (a) isolating immune cells from a subject; [0985] (b) generating or expanding a population of immune cells specific for an oncolytic virus by a method comprising: stimulating the immune cells by culture in the presence of antigen presenting cells (APCs) presenting a peptide of the oncolytic virus, and; [0986] (c) administering at least one immune cell specific for the oncolytic virus to a subject.
[0987] 27B. The method, combination or use according to any one of paras 1B to 26B, wherein the cancer is selected from head and neck cancer, nasopharyngeal carcinoma (NPC), cervical carcinoma (CC), oropharyngeal carcinoma (OPC), gastric carcinoma (GC), hepatocellular carcinoma (HCC) and lung cancer.
[0988] 28B. An oncolytic adenovirus (OncAd) encoding an E1A protein comprising, or consisting of, the amino acid sequence SEQ ID NO:34.
[0989] 29B. An oncolytic adenovirus (OncAd) comprising nucleic acid having one or more binding sites for STAT1.
[0990] 30B. An oncolytic adenovirus (OncAd) comprising a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:51 or an equivalent sequence as a result of codon degeneracy.
[0991] 31B. An oncolytic adenovirus (OncAd) comprising a nucleic acid sequence having at least 60% sequence identity to SEQ ID NO:55 or an equivalent sequence as a result of codon degeneracy.
[0992] 32B. A helper-dependent adenovirus (HDAd) comprising nucleic acid encoding IL-12 and/or antagonist anti-PD-L1 antibody.
[0993] 33B. The HDAd according to para 32B, wherein the HDAd additionally comprises nucleic acid encoding an enzyme capable of catalysing conversion of a non-toxic factor to a cytotoxic form.
[0994] 34B. The HDAd according to para 32B or para 33B, wherein the enzyme is selected from: thymidine kinase, cytosine deaminase, nitroreductase, cytochrome P450, carboxypeptidase G2, purine nucleoside phosphorylase, horseradish peroxidase and carboxylesterase.
[0995] 35B. A chimeric antigen receptor (CAR) comprising an antigen binding domain comprising: [0996] a VL domain comprising: [0997] LC-CRD1: SEQ ID NO:10; [0998] LC-CRD2: SEQ ID NO:11; [0999] LC-CRD3: SEQ ID NO:12; [1000] and a VH domain comprising: [1001] HC-CRD1: SEQ ID NO:13; [1002] HC-CRD2: SEQ ID NO:14; [1003] HC-CRD3: SEQ ID NO:15;
[1004] or [1005] a VL domain comprising: [1006] LC-CRD1: SEQ ID NO:18; [1007] LC-CRD2: SEQ ID NO:19; [1008] LC-CRD3: SEQ ID NO:20; [1009] and a VH domain comprising: [1010] HC-CRD1: SEQ ID NO:21; [1011] HC-CRD2: SEQ ID NO:22; [1012] HC-CRD3: SEQ ID NO:23;
[1013] or [1014] a VL domain comprising: [1015] LC-CRD1: SEQ ID NO:26; [1016] LC-CRD2: SEQ ID NO:27; [1017] LC-CRD3: SEQ ID NO:28; [1018] and a VH domain comprising: [1019] HC-CRD1: SEQ ID NO:29; [1020] HC-CRD2: SEQ ID NO:30; [1021] HC-CRD3: SEQ ID NO:31;
[1022] or [1023] a VL domain comprising: [1024] LC-CRD1: SEQ ID NO:57; [1025] LC-CRD2: SEQ ID NO:58; [1026] LC-CRD3: SEQ ID NO:59; [1027] and a VH domain comprising: [1028] HC-CRD1: SEQ ID NO:60; [1029] HC-CRD2: SEQ ID NO:61; [1030] HC-CRD3: SEQ ID NO:62.
[1031] 36B. The CAR according to para 35B, wherein the CAR comprises an antigen binding domain comprising: [1032] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:16 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:17;
[1033] or [1034] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:24 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:25;
[1035] or [1036] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:32 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:33
[1037] or [1038] a VL comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:63 and a VH comprising, or consisting of, an amino acid sequence having at least 75% sequence identity to SEQ ID NO:64.
[1039] 37B. A nucleic acid, or a plurality of nucleic acids, optionally isolated or man-made, encoding the oncolytic adenovirus (OncAd) according to any one of paras 28B to 31B, the helper-dependent adenovirus (HDAd) according to any one of paras 32B to 24B, or the chimeric antigen receptor (CAR) according to para 35B or para 36B.
[1040] 38B. A cell comprising the oncolytic adenovirus (OncAd) according to any one of paras 28B to 31B, the helper-dependent adenovirus (HDAd) according to any one of paras 32B to 34B, the chimeric antigen receptor (CAR) according to para 35B or para 36B, or the nucleic acid or plurality of nucleic acids according to para 37B.
[1041] 39B. A pharmaceutical composition comprising the oncolytic adenovirus (OncAd) according to any one of paras 28B to 31B, the helper-dependent adenovirus (HDAd) according to any one of paras 32B to 34B, the chimeric antigen receptor (CAR) according to para 35B or para 36B, the nucleic acid or plurality of nucleic acids according to para 37B, or the cell according to para 38B, and a pharmaceutically acceptable carrier, diluent, excipient or adjuvant.
[1042] 40B. A method of treating cancer comprising administering to a subject the oncolytic adenovirus (OncAd) according to any one of paras 28B to 31B, the helper-dependent adenovirus (HDAd) according to any one of paras 32B to 34B, the chimeric antigen receptor (CAR) according to para 35B or para 36B, the nucleic acid or plurality of nucleic acids according to para 37B, the cell according to para 38B, or the pharmaceutical composition according to para 39B.
[1043] 41B. The oncolytic adenovirus (OncAd) according to any one of paraS 28B to 31B, the helper-dependent adenovirus (HDAd) according to any one of paraS 32B to 34B, the chimeric antigen receptor (CAR) according to para 35B or para 36B, the nucleic acid or plurality of nucleic acids according to para 37B, the cell according to para 38B, or the pharmaceutical composition according to para 39B, for use in a method of treating a cancer.
[1044] 42B. Use of the oncolytic adenovirus (OncAd) according to any one of paras 28B to 31B, the helper-dependent adenovirus (HDAd) according to any one of paras 32B to 34B, the chimeric antigen receptor (CAR) according to para 35B or para 36B, the nucleic acid or plurality of nucleic acids according to para 37B, the cell according to para 38B, or the pharmaceutical composition according to para 39B, in the manufacture of a medicament for treating a cancer.
[1045] 43B. The method according to para 40B, the OncAd, HDAd, CAR, nucleic acid or plurality of nucleic acids, cell, or pharmaceutical composition for use according to para 41B, or the use according to para 42B, wherein the cancer is selected from head and neck cancer, nasopharyngeal carcinoma (NPC), cervical carcinoma (CC), oropharyngeal carcinoma (OPC), gastric carcinoma (GC), hepatocellular carcinoma (HCC) and lung cancer.
[1046] 44B. A kit of parts comprising a predetermined quantity of the oncolytic adenovirus (OncAd) according to any one of paras 28B to 31B, the helper-dependent adenovirus (HDAd) according to any one of paras 32B to 34B, the chimeric antigen receptor (CAR) according to para 35B or para 36B, the nucleic acid or plurality of nucleic acids according to para 37B, the cell according to para 38B, or the pharmaceutical composition according to para 39B.
EXAMPLES
[1047] In the following Examples, the inventors describe the generation functional characterisation of novel HER-2 specific CARs and CAR-T cells, oncolytic adenoviruses and helper-dependent adenovirus.
Example 1: HER2-Specific CAR-T Cells
[1048] 1.1 Generation of HER2-Specific CAR Constructs and CAR-T Cells
[1049] HER2-binding CAR constructs were prepared. Briefly, DNA encoding scFv (i.e. VL domain and VH domain joined by a linker sequence) for the anti-HER2 antibody clone C5, E4, F1 or A3 was cloned into a CAR construct backbone comprising a 5′ signal peptide (SP), and CD28 transmembrane (TM) and intracellular domain sequence, with a 3′ CD3ζ intracellular domain sequence. The three HER2-binding CAR constructs are represented schematically in
[1050] HER2 specific CAR-T cells were generated as represented graphically in
[1051] T-cells were thawed and expanded in the presence of 100 IU/mL of recombinant human IL-2 for 5 days and used for in vitro/in vivo experiments and phenotypic analysis.
[1052] 1.2 Characterisation of the HER2-Specific CAR-T Cells
[1053] 1.2.1 Expression of Surface Markers and HER2 CARs
[1054] T cells transduced with HER2 CAR construct encoding scFv for anti-HER2 antibody clone E4 were characterised by flow cytometry for expression of different cell surface molecules. Expanded HER2 specific CAR T-cells were stained with fluorescently-labelled monoclonal antibodies for 30 minutes at 4° C. Discrimination of live/dead cells was achieved by including 7AAD in stainings (BD Pharmingen). Stained cells were analyzed using a Gallios flow cytometer and Kaluza software (BD Bioscience), according to manufacturer's instructions.
[1055] The results are shown in
[1056]
[1057] 1.2.2 Cell Killing Activity
[1058] The HER2-CAR-T cells were analysed for their ability to kill HER2 expressing cancer cells in vitro in cell killing assays.
[1059] In a first experiment, cells of the HER2 negative MDA cell line (negative control), MDA cells stably expressing HER2 (MDA-HER2; positive control), pharynx squamous cell carcinoma cell line FaDu or the head and neck squamous carcinoma cell line SCC47 cells were labelled with Chromium-51 (.sup.51Cr) and co-cultured with non-transduced T-cells (NT) or the HER2-CAR-T cells expressing the indicated CARs at an effector:target cell ratio of 20:1 for 4 hours. After centrifugation, .sup.51Cr levels in the cell culture media were counted using a liquid scintillation counter. The results are shown in
[1060] Expression of HER2 on MDA-HER2, FaDu and SCC47 was confirmed by flow cytometry. Briefly, the cells were stained with fluorescently-labelled monoclonal anti-HER2 antibody or isotype control antibody for 30 minutes at 4° C. Discrimination of live/dead cells was achieved by including 7AAD in stainings (BD Pharmingen). Stained cells were analyzed using a Gallios flow cytometer and Kaluza software (BD Bioscience), according to manufacturer's instructions. The results are shown in
[1061] In a separate experiment, FaDu and SCC47 cells genetically modified to express firefly luciferase (ffLuc) were seeded in wells of 24-well plates, and co-cultured with HER2(C5)-CAR-T cells, HER2(E4)-CAR-T cells, or HER2(F1)-CAR-T cells at an effector:target cell ratio of 1:5 for 3 days, and ffLuc activity was measured using a plate reader (Life Technologies). The results are shown in
Example 2: OncAd Constructs
[1062] 2.1 Generation of OncAd Constructs
[1063] Novel constructs encoding oncolytic adenovirus are prepared using recombinant DNA techniques. In particular embodiments, an OncAd is produced upon modification of a known virus. For example, a region encoding E1A protein from adenovirus 5, such as one lacking the sequence LTCHEACF (SEQ ID NO:52) involved in binding the Rb protein, is replaced with sequence encoding E1A protein from adenovirus 2, similarly lacking the sequence LTCHEACF (SEQ ID NO:52).
[1064] ICOSTAT shown in
[1065] Onc5/3Ad2E1Δ24 (also referred to herein as “Onc5/2E1A24”) shown in SEQ ID NO:55 and represented schematically in
[1066] 2.2 Cell Killing Activity
[1067] The ability of an oncolytic adenovirus of choice or ICOSTAT as generated in Example 2.1 to kill cancer cells may be analysed for example by MTS assay. Briefly, cells of the human alveolar basal epithelial adenocarcinoma cell line A549 cells, FaDu cells, SCC47 cells, or non-cancerous WI-38 human lung fibroblasts or ARPE-19 human retinal pigmented epithelial cells were seeded in wells of 96-well plates and infected with different amounts of a helper-dependent, non-replicating adenovirus (HDAd; as a negative control), an oncolytic adenovirus of choice (e.g. Onc5/3Ad2E1Δ24 described in Example 2.1), or ICOSTAT described in Example 2.1 above.
[1068] Cells may be cultured for 4 days, for example, and then MTS reagents (Promega) may be added to each well, with cells being incubated at 37° C. for 2 hours. Live cells may be analyzed by measuring the absorbance at 490 nm with a plate reader. Readings may be normalized using the readings for untreated cells of each type (i.e. untreated cells =100% cell viability), and wells lacking cells would be considered 0%.
[1069] In particular embodiments, the oncolytic virus of choice is able to kill cancer cells in a dose-dependent manner. The oncolytic virus of choice also exhibits a lower level of cell killing of non-cancerous cells, such as WI-38 and ARPE-19 cells as compared to the level of killing by the virus of cancerous cells, in specific embodiments.
[1070]
[1071]
[1072] 2.3 Ability to Help Helper-Dependent Adenovirus (HDAd)
[1073] The ability of an oncolytic adenovirus of choice or ICOSTAT as generated in Example 2.1 to assist replication of a helper-dependent adenovirus (HDAd) may be analysed by co-infecting cancer cells with the OncoAd and HDAd, and determining virus copy number. Briefly, FaDu or SCC47 cells are plated in 24-well plates and infected with 10 viral particles per cell of HDAd alone, or OncAd+HDAd (at an OncAd:HDAd ratio of 1:10). Cells are harvested at 48 hours post-infection, DNA is extracted and both HDAd and Onc.Ad vector copies are analyzed by quantitative real-time PCR (10 min at 95° C. and then 45 cycles of 10 s at 95° C., 15 s at 60° C., and 30 s at 72° C.) using a Bio-Rad iQ5 real-time PCR detection system (Bio-Rad), and Applied Biosystems SYBR green PCR master mix (Life Technologies). Copy number is normalized using copy number detected for GAPDH.
[1074] In particular embodiments, the oncolytic virus of choice is able to replicate itself and the HDAd sufficiently.
[1075]
[1076] 2.4 Effect of IFNγ on Replication of ICOSTAT in Cancer Cells
[1077] The effect of IFNγ treatment on replication of ICOSTAT OncAd was analysed. Briefly, FaDu and SCC47 cells are plated in 24-well plates, and the cells are infected with 10 vp/cell of the oncolytic virus of choice or icoSTAT 3 hours post-infection cell culture medium is replaced with medium containing, or not containing, 10 ng/mL recombinant IFNγ at 3 hours post-infection, and cell culture media are replaced with fresh media with/without 10 ng/mL recombinant IFNγ again at 24 and 48 hours post-infection. Cells are harvested at 3, 24, 48 and 72 hours post-infection, DNA is extracted from the cells, viral copy numbers are analysed by quantitative real-time PCR and normalized using copy number detected for GAPDH.
[1078]
Example 3: Helper-Dependent Ad (HDAd) Constructs
[1079] 3.1 HDAd Constructs and Production A novel construct encoding a helper-dependent adenovirus was prepared using recombinant DNA techniques. The coding sequence of the resulting construct designated HDAd/L-12_TK_PD-L1 is represented schematically in
[1080] The HDAd HDA28E4EGFP construct containing an EGFP transgene driven by the CMV promoter (HDAdeGFP) was produced as described in Farzad et al. Oncolytics 2014 1: 14008.
[1081] The HDAd “HDIL12_PDL1” contains sequence encoding human IL-12p70 protein and anti-PD-L1 minibody derived from YW243.55.S70 (atezolizumab). The anti-PD-L1 minibody of this construct consists of scFv for YW243.55.S70 fused with a hinge, CH2 and CH3 regions of human IgG1 and a C-terminal HA tag (as described e.g. in Tanoue et al. Cancer Res. (2017) 77(8):2040-2051).
[1082] 3.2 Expression of Encoded Proteins
[1083] Cancer cells were transfected with plasmid HDAd vectors, and medium samples were collected to analyze IL-12p70 and anti-PD-L1 minibody levels in the cell culture media of the transfected cells at 48 hours post-transfection.
[1084] IL-12p70 levels in media were measured using the BD cytokine multiplex bead array system (BD Biosciences), according to manufacturer's instructions. The results are shown in
[1085] Secretion of anti-PD-L1 minibodies into the cell culture medium was detected by western blot analysis, using an anti-HA antibody (to detect the HA-tagged minibodies).
[1086] In another experiment, cells were transfected with the different constructs and at 8 hours post-transfection the cell culture media was replaced with medium containing 10 ng/ml Ganciclovir (GCV). Cell culture medium was then replaced with medium containing 10 ng/ml every 24 hours, and after 7 days, the wells were stained with Crystal Violet solution to reveal viable cells.
[1087] The results are shown in
[1088] In further experiments A549, FaDu or SCC47 cells (n=4 wells per condition) were infected in vitro with HDAd/L-12_TK_PD-L1, HDAd_PD-L1 (see e.g. Tanoue et al., supra), or a control HDAd encoding eGFP (see Farzad et al., supra). The cells were either cultured for 48 hours in the absence of ganciclovir, or medium was changed at 8 hours post-infection and every 24 hours thereafter with medium containing 10 ng/ml ganciclovir.
[1089] Secretion of IL-12 into the cell culture supernatant was analysed by ELISA, and secretion of anti-PD-L1 minibody was analysed by western blot using an anti-HA antibody (the anti-PD-L1 minibody comprises a C-terminal HA-tag). At the end of the experiment wells were stained with Crystal Violet solution to reveal viable cells.
[1090] The results are shown in
[1091] 3.3 Confirmation of Anti-PD-L1 Minibody Binding to PD-L1
[1092] The ability of the anti-PD-L1 minibody encoded by HDAd/L-12_TK_PD-L1 to bind to PD-L1 was analysed by ELISA.
[1093] Briefly, Immulon 2 high binding 96-well plates (VWR) were coated with 500 ng/well of recombinant human PD-L1 (BioVision). After blocking plate with PBS-T containing 3% BSA, serially diluted cell culture media of A549 cells which had been transfected with plasmid encoding GFP (pGFP; negative control), plasmid encoding the anti-PD-L1 minibody described in Tanoue et al. supra, (pPDL1 mini Tanoue) or plasmid encoding the anti-PD-L1 minibody encoded by HDAd/L-12 TK_PD-L1 (pPDL1 mini) were added and incubated at 4° C. for 24 hours. Serially diluted anti-human PD-L1 antibody starting from 10 μg/well (BioLegend) was used as a positive control (PDL1 IgG). After washing plate with PBS-T, HRP-labeled anti-human IgG (for PD-L1 mini and PDL1 mini Tanoue) or HRP-labeled anti-mouse IgG (BioRad; for PD-L1 IgG and Iso IgG) were added for detection, and incubated at room temperature for 1 hour. The plate was then developed, and absorbance at 450 nm was measured using Tecan reader (TECAN).
[1094] The results are shown in
Example 4: Analysis of Treatment of Cancer In Vivo
[1095] The anticancer effect of treatment with the combination of (1) an oncolytic virus of choice+HDAd/L-12_TK_PD-L1+HER2-CAR-T and (2) ICOSTAT+HDAd/L-12_TK_PD-L1+HER2-CAR-T is demonstrated in vivo in mouse xenograft tumour models.
[1096] In a first experiment, 1×10.sup.6 FaDu cells are injected subcutaneously in PBS into NSG male mice. After 12 days, 1×10.sup.8 viral particles (1) oncolytic virus and HDAd/L-12_TK_PD-L1 or (2) ICOSTAT+HDAd/L-12_TK_PD-L1 are injected intratumorally at an OncAd:HDAd ratio of 1:20.
[1097] In a second experiment, 0.5×10.sup.6 FaDu cells are injected orthotopically into NSG male mice. After 6 days, 1×10.sup.8 viral particles (1) oncolytic virus and HDAd/L-12_TK_PD-L1 or (2) ICOSTAT+HDAd/L-12_TK_PD-L1 are injected intratumorally at an OncAd:HDAd ratio of 1:20.
[1098] In both experiments, 3 days after administration of the viral particles, 1×10.sup.6 HER2-CAR T cells are administered intravenously.
[1099] In both experiments, control conditions are included as follows:
TABLE-US-00002 Condition OncAd HDAd CAR T 1 (test condition) Of choice HDAdIL-12_TK_PD-L1 HER2 CAR-T 2 (test condition) ICOSTAT HDAdIL-12_TK_PD-L1 HER2 CAR-T 3 — HDAdIL-12_TK_PD-L1 HER2 CAR-T 4 Of choice — HER2 CAR-T 5 ICOSTAT — HER2 CAR-T 6 Of choice HDAdIL-12_TK_PD-L1 — 7 ICOSTAT HDAdIL-12_TK_PD-L1 — 8 Of choice — — 9 ICOSTAT — — 10 — HDAdIL-12_TK_PD-L1 — 11 — — HER2 CAR-T
[1100] Tumor size is monitored and tumour volumes are calculated using the formula: Width.sup.2×Length×0.5.
[1101] The use of the combination of oncolytic virus, HDAdIL-12_TK_PD-L1 and HER2 CAR-T (test condition 1) is found to have an improved antitumour effect as compared to the use of any of the agents alone (conditions 8, 10 or 11), or compared to the use of two of the three agents (conditions 3, 4 and 6).
[1102] Similarly, the use of the combination of ICOSTAT, HDAdIL-12_TK_PD-L1 and HER2 CAR-T (test condition 2) is found to have an improved antitumour effect as compared to the use of any of the agents alone (conditions 9, 10 or 11), or compared to the use of two of the three agents (conditions 3, 5 and 7).
[1103] Similar results are observed when xenograft tumours are established using SCC47 cells and A549 cells.
Example 5: Analysis of the Anti-Cancer Activity of the HER2-Specific CAR-T Cells In Vivo
[1104] The anti-cancer activity of the HER2-specific CAR-T cells (see Example 1 above) was investigated in vivo in a FaDu cell-derived xenograft model of squamous cell head and neck cancer.
[1105] Briefly, 0.5×10.sup.6 FaDu cells were injected orthotopically into NSG male mice. After 9 days, mice were injected via the tail vein with 1×10.sup.6 T cells genetically modified to express firefly luciferase, which had not been transduced with a HER2-CAR construct, or with 1×10.sup.6 firefly luciferase-expressing T cells which had been transduced with the C5, F1 or A3 CAR constructs. A control condition was included in the experiment in which mice were not injected with T cells at day 9.
[1106] Luciferase activity (and thus number and distribution of the administered T cells), body weight, survival of the mice was monitored overtime. Luciferase activity was monitored by intraperitoneal injection of D-Luciferin (1.5 mg per mouse), and imaging of the mice 10 min later using an IVIS imager (Xenogen).
[1107]
[1108]
[1109] In a separate experiment NOD scid gamma (NSG) mice were injected via the tail vein with 1×10.sup.6 firefly luciferase-expressing T cells which had not been transduced with a HER2-CAR construct, or with 1×10.sup.6 firefly luciferase-expressing T cells which had been transduced with the C5, F1 or A3 CAR construct. Luciferase activity was monitored as described above, and body weight of the mice was also monitored overtime.
[1110] The results of the experiment are shown in
Example 6: Analysis of the Anti-Cancer Activity of the Combination of Oncolytic Virus, HDAd Virus and HER2-Specific CAR-T Cells In Vivo
[1111] The anti-cancer activity of a combination of oncolytic virus, HdAd and HER-specific CAR-T cell therapy was investigated in vivo in a FaDu cell-derived xenograft model of squamous cell head and neck cancer.
[1112] Briefly, 0.5×10.sup.6 FaDu cells were injected orthotopically into NSG male mice. After 6 days, one group of mice was then injected intratumorally with a combination of Onc5/3Ad2E1Δ24 (described in Example 2.1) and HDAd/L-12_TK_PD-L1 described in Example 3.1 (this combination of OncAd and HdAd is referred to herein as “CAdtrio”). A total of 1×10.sup.7 viral particles were administered, at a 1:10 ratio of Onc5/3Ad2E1Δ24:HDAd/L-12_TK_PD-L1.
[1113] Three days later, mice were injected via the tail vein with 1×10.sup.6 T cells engineered to express firefly luciferase, which had been transduced with the HER2-specific CAR construct corresponding to clone F1. A control group of mice which had not been administered with CAdtrio was injected via the tail vein with 1×10.sup.6 firefly luciferase-expressing T cells which had not been transduced with a HER2-CAR construct, and a further control group of mice was not administered with CAdtrio nor injected with T cells. Luciferase activity, body weight and survival of the mice was monitored over time.
[1114] Prior to their use in the experiment the F1.CART cells were characterised flow cytometry, and the results are shown in
[1115] The results of the experiments analysing the therapeutic efficacy of the combination of oncolytic virus, HDAd virus and HER2-specific CAR-T cells to treat cancer in vivo are shown in
[1116] In further experiments two different ratios of Onc5/3Ad2E1Δ24 to HDAd/L-12_TK_PD-L1 were investigated.
[1117] Briefly, 0.5×10.sup.6 FaDu cells modified to express firefly luciferase were injected orthotopically into NSG male mice. After 6 days, mice were injected intratumorally with: [1118] (i) 1×10.sup.7 viral particles of CAdtrio, at a ratio of Onc5/3Ad2E1Δ24:HDAd/L-12_TK_PD-L1 of 1:10; [1119] (ii) 1×10.sup.7 viral particles of CAdtrio, at a ratio of Onc5/3Ad2E1Δ24:HDAd/L-12_TK_PD-L1 of 1:20; [1120] (iii) 1×10.sup.8 viral particles of CAdtrio, at a ratio of Onc5/3Ad2E1Δ24:HDAd/L-12_TK_PD-L1 of 1:10; or [1121] (iv) 1×10.sup.8 viral particles of CAdtrio, at a ratio of Onc5/3Ad2E1Δ24:HDAd/L-12_TK_PD-L1 of 1:20.
[1122] Three days later, mice were injected via the tail vein with 1×10.sup.6 T cells which had been transduced with the F1 CAR construct (not expressing firefly luciferase). The cancer was monitored overtime by analysis of luciferase activity as described above, and the body weight of the mice was also monitored.
[1123] The results of the experiments are shown in
Example 7: Analysis of the Anti-Cancer Activity of the Combination of Oncolytic Virus, HDAd Virus and Ganciclovir (GCV) In Vivo
[1124] The anti-cancer activity of a combination of oncolytic virus and HdAd (encoding thymidine kinase) (I,e, CAdtrio) in conjunction with ganciclovir (GCV) was investigated in vivo in a FaDu cell-derived xenograft model of squamous cell head and neck cancer.
[1125] Ectopic FaDu tumors were established by subcutaneous injection of FaDu cells into the flanks of mice. The mice were subsequently injected intratumorally with 1×10.sup.8 viral particles of CAdtrio, at a ratio of Onc5/3Ad2E1Δ24:HDAd/L-12_TK_PD-L1 of 1:10. One group of mice (n=5) was then injected intraperitoneally on days 2, 3, 4, 5, 7, 10, 14, 17 and 21 days after CAdtrio injection with 10 mg/kg of ganciclovir.
[1126] Blood samples were collected from the mice on days 2, 7, 14 and 21 and analysed by ELISA for IL-12 expression. Tumor volumes were monitored throughout the experiment. At day 22 Onc.Ad and HDAd vector copy numbers were determined in DNA extracted from the tumors by quantitative real-time PCR analysis, and normalised using the copy number detected for GAPDH.
[1127] The results of the experiments are shown in
Example 8: Generation of Oncolytic Virus-Specific T Cells and HER-Specific CAR-Expressing Oncolytic Virus-Specific T Cells
[1128] 8.1 Generation and Characterisation of Oncolytic Virus-Specific T Cells
[1129] Adenovirus-specific T cells (AdVSTs) and activated T cells (ATCs) were prepared as follows.
[1130] Anti-CD3 (clone OKT3) and anti-CD28 agonist antibodies were coated onto wells of tissue culture plates by addition of 0.5 ml of 1:1000 dilution of 1 mg/ml antibodies, and incubation for 2-4 hr at 37° C., or at 4° C. overnight.
[1131] PBMCs were isolated from blood samples obtained from healthy donors according to the standard Ficoll-Paque method.
[1132] ATCs:
[1133] 1×10.sup.6 PBMCs (in 2 ml of cell culture medium) were stimulated by culture on the anti-CD3/CD28 agonist antibody-coated plates in CTL cell culture medium (containing 50% Advanced RPMI, 50% Click's medium, 10% FBS, 1% GlutaMax, 1% Pen/Strep) supplemented with 10 ng/ml IL-7 and 5 ng/ml IL-15. The cells were maintained at 37° C. in a 5% CO.sub.2 atmosphere. The next day, 1 ml of the cell culture medium was replaced with fresh CTL medium containing 20 ng/ml IL-7 and 10 ng/ml IL-15.
[1134] ATCs were maintained in culture, and subsequently harvested and used in experiments or cryopreserved between days 5-7.
[1135] AdVSTs:
[1136] 1×10.sup.6 PBMCs (in 2 ml of cell culture medium) were stimulated by culture on the anti-CD3/CD28 agonist antibody-coated plates in CTL cell culture medium supplemented with 10 ng/ml IL-7 and 100 ng/ml IL-15.
[1137] 20 μl of a 200-fold dilution of Adenovirus-specific Hexon Pepmix (JPT Cat #PM-HAdV3) or Penton PepMix (JPT Cat #PM-HAdV5) was added to the wells. The cells were maintained at 37° C. in a 5% CO.sub.2 atmosphere. After 48 hours cells were fed with CTL medium, with added IL-7 and IL-15 to a final concentration of 10 ng/ml IL-7 and 100 ng/ml IL-15.
[1138] 8.2 Generation of CAR-Expressing, Oncolytic Virus-Specific T Cells
[1139] On day 3, AdVSTs were resuspended at a concentration of 0.125×10.sup.6 cells/ml in CTL cell culture medium containing 10 ng/ml IL-7 and 100 ng/ml IL-15.
[1140] Retronectin coated plates were prepared by incubation of RetroNectin (Clontech) diluted 1:100 in PBS for 2-4 hr at 37° C., or at 4° C. overnight. The wells were washed with CTL medium, 1 ml of retroviral supernatant of HER2-specific CAR retrovirus was added to wells, and plates were centrifuged at 2000g for 1.5 hr. At the end of the centrifugation step retroviral supernatant was aspirated, and 2 ml of AdVST suspension (i.e. 0.25×10.sup.6 cells) was added to wells of the plate. Plates were centrifuged at 400g for 5 min, and incubated at 37° C. in a 5% CO.sub.2 atmosphere.
[1141] After 48 hrs (i.e. on day 6) the cell culture medium was aspirated and replaced with CTL cell culture medium containing 10 ng/ml IL-7 and 100 ng/ml IL-15.
[1142] On day 9 cells were harvested and used in experiments or cryopreserved, or subjected to a second stimulation to expand CAR-expressing AdVSTs (see Example 8.3).
[1143] 8.3 Expansion of AdVSTs and CAR-AdVSTs
[1144] AdVSTs and CAR-expressing AdVSTs were expanded by further stimulations as desired, as follows.
[1145] Pepmix-pulsed autologous ATCs were used as APCs, and K562cs cells (see e.g. Ngo et al., J Immunother. (2014) 37(4):193-203) were used as costimulatory cells. The final ratio of AdVSTs or CAR-AdVSTs:ATCs:K562cs cells in the stimulation cultures was 1:1:3-5.
[1146] AdVSTs or CAR-AdVSTs were resuspended to a concentration of 0.2×10.sup.6 cells/ml in CTL medium.
[1147] 1×10.sup.6 ATCs were incubated with 10 μl of 200-fold dilution of Adenovirus-specific Hexon Pepmix (JPT Cat #PM-HAdV3) or Penton PepMix (JPT Cat #PM-HAdV5) at 37° C. for 30 min. The ATCs were subsequently irradiated at 30 Gy and harvested. 3-5×10.sup.6 K562cs cells were irradiated at 100 Gy.
[1148] The ATCs and K562cs cells were then mixed in a total volume of 5 ml CTL medium, and 20 ng/ml IL-7 and 200 ng/ml IL-15 was added, 1 ml of this mixture was added to wells of a 24 well plate, and 1 ml of AdVST suspension or CAR-AdVST suspension was added to the wells.
[1149] Cells were maintained at 37° C. in a 5% CO.sub.2 atmosphere. After 3-4 days cell culture medium was added as necessary, and after 6-7 days cells the expanded AdVSTs or CAR-AdVSTs were harvested for use in experiments.
Example 9: Analysis of the Anti-Cancer Activity of Combinations of Oncolytic Virus, HDAd, Oncolytic Virus-Specific T Cells and CAR-Expressing Oncolytic Virus-Specific T Cells In Vivo
[1150] The anti-cancer activity of different combinations of oncolytic virus, HDAd, oncolytic virus-specific T cells and CAR-expressing oncolytic virus-specific T cells was investigated in vivo in a FaDu cell-derived xenograft model of squamous cell head and neck cancer.
[1151] Briefly, 0.5×10.sup.6 FaDu cells engineered to express firefly luciferase were injected orthotopically into NSG male mice. After 6 days groups of mice were injected intratumorally with: [1152] (i) 1×10.sup.7 viral particles of CAdtrio, at a ratio of Onc5/3Ad2E1Δ24:HDAd/L-12_TK_PD-L1 of 1:10; or [1153] (ii) 1×10.sup.7 viral particles of Onc5/3Ad2E1Δ24.
[1154] Three days later, mice were injected via the tail vein with: [1155] (a) 1×10.sup.6 AdVSTs, or [1156] (b) 1×10.sup.6 AdVSTs transduced with anti-HER2 CAR clone F1 (prepared as described in Example 8).
[1157] Prior to their use in the experiment the AdVSTs and F1.CAR-AdVSTs were characterised by flow cytometry, and the results of the analysis are shown in
[1158] The cancer was monitored over time by analysis of luciferase activity as described above, and the body weight of the mice was also monitored.
[1159] The results of the experiments are shown in
Example 10: Analysis of the Anti-Cancer Activity of the Combination of Oncolytic Virus, HDAd Virus and HER2-Specific CAR-T Cells in In Vivo Mouse Models
[1160] Tumour cells derived from HNSCC (SCC 47), prostate cancer (PC-3), cervical cancer (SiHa) and nasopharyngeal SSC (FaDu) were implanted into the right flanks of NSG mice. Animals were treated with control, CAdtrio (Onc5/3Ad2E1Δ24:HDAd/L-12_TK_PD-L1), HER2 specific CAR T cells, or a combination of CAdtrio and HER2.CAR T cells.
[1161] The mice received an intratumoural injection of 1×10.sup.8 viral particles of CAdtrio at a ratio of 1:20 Onc5/3Ad2E1Δ24:HDAd/L-12_TK_PD-L1. Three days later, the groups receiving CAR T cell therapy received an intravenous, systemic, administration via tail vein injection of a total of 1×10.sup.6 HER2.CAR T cells. Tumour volumes were measured at different time points. The end point was established at a tumour volume of >1500 mm.sup.3.
[1162] The results are shown in
[1163] The same treatment was assessed in a metastatic (orthotopic) tumour model of HNSCC. FaDu cells labelled with firefly luciferase were transplanted into the tongues of NSG mice. 1×10.sup.8 viral particles of CAdtrio were injected into the tongue. Three days later, 1×10.sup.6 HER2.CAR T cells were administered systemically by injection. Bioluminescence of FaDu cells, indicating cancer cell distribution, and body weight were monitored at different time points. The end point was established as animal body weight <80%.
[1164] The results are shown in
Example 11: Analysis of Anti-Tumour Efficacy and Host Immune Stimulation by CAdVEC in Humanised Mice
[1165] In the following examples, CAdtrio (oncolytic virus and helper-dependent adenovirus combination described herein) is referred to as ‘CAdVEC’. To address how the combination of local oncolysis-dependent inflammation, IL-12, and PD-L1 blocking mini-antibody produced by CAdVEC affects the human immune system, humanized mouse models were generated that reconstitute human innate and adaptive immune cells.
[1166] Transgenic NSG mice expressing human SCF, IL-3, and GM-CSF (NSGSGM3) were reconstituted with human innate and adaptive immune cells after hepatic transplantation of human cord blood-derived CD34+ cells. Once the presence in the blood of human CD45.sup.+ cells was confirmed, human FaDu cells were transplanted into the hind flank. Mice received a single intratumoural injection of TBG (buffer control), 2.5×10.sup.6 viral particles of CAdVEC, or 2.5×10.sup.9 viral particles of CAdVEC. A dose of 2.5×10.sup.6 VP dose/mouse corresponds to a human dose of 1×10.sup.10 VP/patient. A dose of 2.5×10.sup.9 VP dose/mouse corresponds to 1-log higher than a human dose of 1×10.sup.12 VP/patient.
[1167] The results are shown in
Example 12: CAdVEC and HER2.CAR T Cell Treatment in Subcutaneous Xenograft Immunodeficient Mice
[1168] CAdVEC was studied for its ability to enhance the anti-tumour activity of adoptively-transferred HER2.CAR T cells in vivo.
[1169] Monocytes infiltrate many solid tumour types (e.g., lung adenocarcinoma, pancreatic adenocarcinoma, and renal cell carcinoma). To mimic the human tumour microenvironment in subcutaneous xenograft mouse models, human cancer cells were co-transplanted with monocytes that were partially HLA-matched to tumour cells. CAR T cells were generated from the same donor and the anti-tumour effects of combination treatment were studied.
[1170] Eight-week old female NSG mice were subcutaneously transplanted with ffLuc-labeled human FaDu cells mixed with partially HLA-matched monocytes. Mice were split into four treatment groups:
[1171] 1. TGB buffer control (day 0)
[1172] 2. intratumoral injection of 1×10.sup.7 viral particles CAdVEC (Onc.Ad:HDAd=1:1) (day 0)
[1173] 3. systemic administration of 1×10.sup.6 HER2.CAR T cells (day 3)
[1174] 4. intratumoral injection of 1×10.sup.7 viral particles CAdVEC (Onc.Ad:HDAd=1:1) (day 0) followed by systemic administration of 1×10.sup.6 HER2.CAR T cells (day 3)
[1175] The results are shown in
[1176] Thus, local CAdVEC treatment augments the anti-tumour effects of the CAR T cells.
Example 13: CAdVEC and HER2.CAR T Cell Treatment in Orthotopic Xenograft Immunodeficient Mice
[1177] An orthotopic mouse model was generated to reflect patient outcomes as accurately as possible. Monocytes were co-transplanted with cancer cells and the anti-tumour efficacy of the combination treatment was studied. The model was used to study the efficacy of the combination treatment against both primary and metastatic tumour growth.
[1178] Nine-week old female NSG mice were orthotopically transplanted with ffLuc-labeled human FaDu cells and partially HLA-matched monocytes. Upon confirming local lymph node metastasis with IVIS imaging (Xenogen), the mice were divided into 4 groups and treated with one of:
[1179] 1. TGB buffer control (day 0)
[1180] 2. intratumoral injection of 2.5×10.sup.6 viral particles CAdVEC (Onc.Ad:HDAd=1:1) (day 0)
[1181] 3. systemic administration of 1×10.sup.6 HER2.CAR T cells (day 3)
[1182] 4. intratumoral injection of 2.5×10.sup.6 viral particles CAdVEC (Onc.Ad:HDAd=1:1) (day 0) followed by systemic administration of 1×10.sup.6 HER2.CAR T cells (day 3)
[1183] The results are shown in
[1184] Since combination but not single treatment provided long-term control over both primary and metastatic tumours in orthotopic xenograft mice, it was concluded that each treatment overcomes the inherent limitations of the other (CAdVEC: limited anti-tumour effect to metastasized tumors; CART: limited anti-tumour effect to bulky tumour and tumours can escape detection by downregulating the target antigen).
Example 14: Treatment of Advanced HER2-Positive Solid Tumors Using Binary Oncolytic Adenovirus in Combination with HER2-Specific CAR-T
[1185] 14.1 Brief Summary
[1186] This study involves patients with a type of cancer called HER2 (Human Epidermal Growth Factor Receptor 2) positive cancer. Because there is no standard treatment for this cancer at this time or because the currently used treatments do not work fully, this study asks patients to volunteer to take part in a research study investigating the safety and efficacy of using special immune cells called HER2 chimeric antigen receptor-modified Adenovirus-specific cytotoxic T lymphocytes (HER2-AdVST), in combination with intra-tumor injection of CAdVEC, an oncolytic adenovirus that is designed to help the immune system including HER2-AdVST react to the tumor.
[1187] The body has different ways of fighting infection and disease. No single way seems perfect for fighting cancers. This research study combines two different ways of fighting cancer: oncolytic adenovirus (CAdVEC) and T cells (HER2-AdVST).
[1188] CAdVEC is an oncolytic adenovirus that has been modified to include additional immune system stimulators. Specifically, genes that stimulate the immune system have been added to the oncolytic adenovirus. Oncolytic adenoviruses are viruses that are made to target and kill cancer cells without killing normal cells. Other oncolytic adenoviruses have been used in patients before however CAdVEC has not. In this study, CAdVEC will be injected into participants tumor at one tumor site which is most easiest to reach. Once the oncolytic adenovirus infects the cancer cells, the genes will be expressed, resulting in activation of the immune response so it can attack and kill cancer cells. However, because this approach may have limited effects on the other tumor sites that have not received the oncolytic virus injection, patients will also receive specific T cells following the intratumor CAdVEC injection. These T cells are special infection-fighting blood cells that can kill cells infected with viruses and tumor cells. Investigators have found from previous research that investigators can put a new gene into T cells and make them specifically recognize and kill cancer cells expressing HER2. In the past patients have signed a consent form that allowed us to put on their T cells the HER2 chimeric receptor with viral antigen receptor on their T cells. Investigators want to see if these cells can survive in a patient's blood and affect the tumor. Although HER2 chimeric antigen receptor modified cytotoxic T lymphocytes have been used in patients before, HER2-AdVST has not.
[1189] 14.2 Detailed Description
[1190] Treatment with CAdVEC: [1191] On the first day of participants' treatment, participants receive an intratumor injection of CAdVEC.
[1192] A blood sample is obtained from participants on Day 1 of treatment before participants receive CAdVEC intra-tumor injection. Depending on the location of the participant's tumor, different techniques are used for intra-tumor injection. The most common route of injection is ultrasound-guided percutaneous (needle puncture in the skin) injection, but endoscopic (examination of the inside of the body by using a lighted, flexible instrument called an endoscope) ultrasound-guidance are used for some patients as appropriate. Participants' doctors describe the procedures in more detail. Prior to percutaneous injection, participants may receive an anti-anxiety medicine such as diazepam (Valium) 5-10 mg to calm participants down, to relieve muscle spasms, and provide sedation. If the participant's tumor is injected during an endoscopic procedure, the procedure may be done under sedation.
[1193] This study looks at different doses of CAdVEC. The decision about the dose participants receive is determined when enrolled on the study.
[1194] Treatment with HER2-AdVST: [1195] Participants provide blood samples for the production of Adenovirus-specific HER2 targeting cytotoxic T-lymphocytes (HER2-AdVSTs) in the lab. Investigators make the cells by first combining a special type of cells called dendritic cells (DCs) or monocytes with the T cells in the presence of produced mixtures of adenoviral proteins. Investigators then put a new gene in to those T cells to make them specifically attract to and kill HER2 positive tumors. As the T cells grow, investigators culture them by adding adenoviral proteins for stimulation and expansion. Investigators call those T cells: adenovirus-specific HER2-targeting T cells (HER2-AdVST). These cells are grown and frozen for participants.
[1196] Participants receive HER2-AdVST cells infusion between day 3 and day 14 after receiving CAdVEC intra-tumor injections. Before receiving the T cell infusion, participants may be given Benadryl (diphenhydramine) and Tylenol (acetaminophen). Tylenol and Benadryl are given to prevent a possible allergic reaction to the T cell administration.
[1197] This study looks at different doses of HER2-AdVST. The decision about the dose participants receive is determined when participants are enrolled on the study.
[1198] Standard Medical Tests Before Treatment:
[1199] Before being treated, participants receive a series of standard medical tests: [1200] Physical exam and History [1201] Blood tests to measure blood cells, kidney and liver function. [1202] Pregnancy testing for female patients of childbearing potential (on blood or urine) [1203] Measurements of participants tumor by scans will be performed as standard of care procedures [1204] Color photography of skin lesions to estimate the size of the lesion, if present
[1205] Standard Medical Tests During and after Treatment:
[1206] Participants receive standard medical tests during and after study treatment: [1207] Physical exams and History [1208] Blood tests to measure blood cells, kidney and liver function. [1209] Measurements of participants tumor by PET scans or CT scans 12 weeks after CAdVEC intra-tumor injection and then every 3 months up to 24 months per standard of care evaluation. [1210] Color photography of skin lesions to estimate the size of the lesion, if present.
[1211] Study Specific Evaluations:
[1212] Investigators follow participants closely after treatment for any side effects for at least 2 years after the participants last infusion.
[1213] To learn more about the way the T cells are working in the participants body, an extra 20-50 mL (4-10 teaspoons) of blood is taken before CAdVEC injection, before the HER2-AdVST infusion, and at week 1, 2, 4 and 6 and 3, 6, 9 and 12 months after HER2-AdVST infusion. The blood may be drawn from participants central line at the time of the regular blood tests. Investigators use this blood to see how long the T cells last and to look at the immune response to the participants cancer. Investigators may also ask participants for a tumor tissue biopsy at week 12 if necessary.
[1214] 14.3 Study Details
[1215] Study type: Interventional
[1216] Study Phase: Phase 1
[1217] Study Design: [1218] Intervention Model: Single Group Assignment; [1219] Masking: None (Open Label) [1220] Primary Purpose: Treatment
[1221] 14.4 Conditions
[1222] Bladder Cancer
[1223] Head and Neck Squamous Cell Carcinoma
[1224] Cancer of the Salivary Gland
[1225] Lung Cancer
[1226] Breast Cancer
[1227] Gastric Cancer
[1228] Esophageal Cancer
[1229] Colorectal Cancer
[1230] Pancreatic Adenocarcinoma
[1231] 14.5 Intervention [1232] CAdVEC [1233] HER2.CAR AdVST
[1234] The administration of CAdVEC may create a pro-inflammatory tumor microenvironment and will promote the recruitment and expansion of adoptively transferred CAR AdVSTs via both CAR recognition of tumor antigen and TCR recognition of viral antigen. The CAR AdVSTs expanded at primary tumor sites may re-circulate and target metastasized tumors. The combination this study proposes to test has the potential to overcome each of the established individual limitations of oncolytic viruses and of CAR T-cell/VST and testing each element separately would not be beneficial or informative.
[1235] 14.6 Study Arms
[1236] Experimental: Treatment Phase Six dose levels will be evaluated using the BOIN design. Cohorts of size 3 will be enrolled at each dose level (see section 11.1) until 9 evaluable patients have been studied at a single dose. Each patient receives an intratumoral injection of CAdVEC alone or combined with an injection of HER2.CAR.AdVST 3 days later (Day 4), according to the following dose levels.
[1237] Dose Level 1: [1238] CAdVEC=1×10.sup.10 viral particles
[1239] Dose Level 2: [1240] CAdVEC=1×10.sup.10 viral particles+1×10.sup.6 HER2.CAR-AdVSTs
[1241] Dose Level 3: [1242] CAdVEC=1×10.sup.11 viral particles+1×10.sup.6 HER2.CAR-AdVSTs
[1243] Dose Level 4: [1244] CAdVEC=1×10.sup.11 viral particles+1×10.sup.7 HER2.CAR-AdVSTs
[1245] Dose Level 5: [1246] CAdVEC=1×10.sup.12 viral particles+1×10 HER2.CAR-AdVSTs
[1247] Dose Level 6: [1248] CAdVEC=1×10.sup.12 viral particles+1×10.sup.8 HER2.CAR-AdVSTs
[1249] 14.7 Eligibility Criteria
[1250] Inclusion/Exclusion Criteria
[1251] 1. Histologically confirmed HER2 positive solid tumors, including but not limited to: head and neck squamous cell carcinoma; cancer of the salivary glands; lung cancer; breast cancer; bladder cancer; gastric cancer; esophageal cancer; colorectal cancer; and pancreatic adenocarcinoma. HER2 positivity is defined as ≥2+ staining by IHC with the FDA-approved 4B5 antibody (Ventana), which refers to greater than weak-to-moderate staining intensity in >10% tumor cells.
[1252] 2. The disease must be deemed by the appropriate multidisciplinary tumor board unsuitable for curative surgery, radiotherapy, systemic therapy or any combination of the above modalities.
[1253] 3. Disease must have progressed after standard first line therapy, or without available effective treatment options.
[1254] 4. The patient must have at least one tumor site appropriate for intratumoral injection.
[1255] 5. The patient must have radiographically measurable disease as per RECIST 1.1.
[1256] 6. The patient must have adequate organ function within 7 days prior to consent for treatment as indicated by following measures: [1257] Hematologic: Absolute neutrophil count (ANC) ≥1.0×10{circumflex over ( )}9/l; Hemoglobin 29 g/dl; [1258] Platelet count ≥100×10{circumflex over ( )}9/l; PT or PTT ≤1.5×ULN unless the subject is receiving anticoagulation. [1259] Hepatic function: bilirubin <2 ULN, and AST and ALT <3 ULN [1260] Renal Function: serum creatinine <2× the ULN or creatinine clearance >30 mL/min.
[1261] 7. Prior HER2 targeted therapy is allowed if delivered at least 4 weeks prior to the enrollment.
[1262] 8. Prior immunotherapy is allowed if it was delivered at least 4 weeks prior to the enrollment.
[1263] 9. Eastern Cooperative Oncology Group (ECOG) performance status 2 or less.
[1264] 10. Females of childbearing potential must have a negative pregnancy test and agree to use contraception during on-study protocol therapy.
[1265] 11. Male subjects with pregnant partner/female partner of childbearing potential agree to use barrier contraceptive during the study to minimize the risk of embryo-fetal exposure.
[1266] 12. The patient is 18 years of age, and able to understand and give informed consent to study related procedures and treatments.
[1267] Sex/Gender: All sexes eligible for study
[1268] Ages: 18 years and older
[1269] Healthy volunteers not accepted.
[1270] 14.8 Outcome Measures
[1271] Primary Outcome Measures
[1272] 1. Number of patients with dose limiting toxicity (DLT) by CTCAE 5.0 [Time Frame: 6 weeks after the HER2.CAR AdVST infusion or 6 weeks+3 days after the CAdVEC injection.] [1273] Incidence of dose limiting toxicities (DLT) of CAdVEC intratumoral injection in combination with HER2.CAR AdVST cells in patients with advanced refractory HER2 positive solid tumors.
[1274] Secondary Outcome Measures [1275] 1. Overall Response Rate (ORR) according to RECIST1.1 criteria [Time Frame: 13 weeks] [1276] Overall response rate is defined as the number of patients experiencing PR or better (i.e. PR+CR) divided by the number evaluable for efficacy. Tumor regression or progression will be evaluated accordingly with RECIST 1.1 criteria. [1277] 2. Disease Control Rate (DCR) [Time Frame: 13 weeks] [1278] Disease Control Rate is defined as the number of patients experiencing SD or better (i.e. SD+PR+CR) divided by the number evaluable for efficacy. Tumor regression or progression will be evaluated accordingly with RECIST 1.1 criteria. [1279] 3. Progression Free Survival (PFS) [Time Frame: 15 years] [1280] Progression-Free Survival is defined as the time from start of treatment to disease progression or death. [1281] 4. Overall Survival (OS) [Time Frame: 15 years] [1282] Overall survival is defined as the time from the start of treatment to death due to any cause. [1283] 5. Number of treatment related adverse events with grade 3 or greater severity by CTCAE 5.0 [Time Frame: 30 days] [1284] Treatment related adverse events with grade 3 or greater severity by CTCAE 5.0