Vascular endothelial growth factor receptor targeting peptide-elastin fusion polypeptides
11518798 · 2022-12-06
Assignee
- Industry-University Cooperation Foundation Hanyang University Erica Campus (Ansan-si, KR)
- INJE UNIVERSITY INDUSTRY-ACADEMIC COOPERATION FOUNDATION (Gimhae-si, KR)
Inventors
- Dong Woo Lim (Ansan-si, KR)
- Min Jung Kang (Bucheon-si, KR)
- Jae Sang Lee (Ansan-si, KR)
- Sae-Gwang Park (Busan, KR)
Cpc classification
C07K16/2863
CHEMISTRY; METALLURGY
B82Y5/00
PERFORMING OPERATIONS; TRANSPORTING
C07K14/78
CHEMISTRY; METALLURGY
A61K38/39
HUMAN NECESSITIES
A61K9/141
HUMAN NECESSITIES
International classification
A61P43/00
HUMAN NECESSITIES
C07K14/78
CHEMISTRY; METALLURGY
A61K38/39
HUMAN NECESSITIES
A61K9/14
HUMAN NECESSITIES
C07K16/28
CHEMISTRY; METALLURGY
Abstract
Disclosed is a fusion polypeptide for inhibiting neovascularization, including a peptide specifically binding to vascular endothelial growth factor (VEGF) receptors, and a hydrophilic elastin-based polypeptide (hydrophilic EBP) linked to the peptide.
Claims
1. A fusion polypeptide for inhibiting neovascularization, comprising: a peptide of SEQ ID NO: 38 specifically binding to vascular endothelial growth factor (VEGF) receptors; and a hydrophilic elastin-based polypeptide (hydrophilic EBP) linked to the peptide, wherein the fusion polypeptide further comprises a hydrophobic elastin-based polypeptide (hydrophobic EBP) linked to the hydrophilic EBP, and the hydrophobic EBP is consisting of an amino acid sequence represented by Formula 1 or 2 below: TABLE-US-00010 Formula 1 [SEQ ID NO: 1] n; or Formula 2 [SEQ ID NO: 2] n, wherein SEQ ID NO: 1 is consisting of [VPGXG VPGXG VPGXG VPGXG VPGXG VPGXG]; SEQ ID NO: 2 is consisting of [VPAXG VPAXG VPAXG VPAXG VPAXG VPAXG]; n is an integer of 1 or more, and represents the number of repeats of SEQ ID NO: 1 or SEQ ID NO: 2; and X is an amino acid other than proline, is selected from any natural or artificial amino acids when the pentapeptide VPGXG or VPAXG is repeated, and at least one of X is a hydrophobic or aliphatic amino acid.
2. The fusion polypeptide according to claim 1, wherein the hydrophobic EBP is consisting of an amino acid sequence represented by Formula 1 or 2: in Formula 1, n is 1, and each X of the pentapeptide repeats is consisting of G (Gly), A (Ala), and F (Phe) in a ratio of 1:3:2 [SEQ ID NO: 28], or in Formula 2, n is 1, and each X of the pentapeptide repeats is consisting of, G (Gly), A (Ala), and F (Phe) in a ratio of 1:3:2 [SEQ ID NO: 29]; K (Lys), A (Ala), and F (Phe) in a ratio of 1:3:2 [SEQ ID NO: 30]; D (Asp), A (Ala), and F (Phe) in a ratio of 1:3:2 [SEQ ID NO: 31]; K (Lys) and F (Phe) in a ratio of 3:3 [SEQ ID NO: 32]; D (Asp) and F (Phe) in a ratio of 3:3 [SEQ ID NO: 33]; H (His), A (Ala), and I (Ile) in a ratio of 3:2:1 [SEQ ID NO: 34]; H (His) and G (Gly) in a ratio of 5:1 [SEQ ID NO. 35]; or G (Gly), C (Cys), and F (Phe) in a ratio of 1:3:2 [SEQ ID NO: 36].
3. The fusion polypeptide according to claim 1, wherein the hydrophobic EBP is consisting of an amino acid sequence represented by Formula 2: in Formula 2, n is 12, and each X of the pentapeptide repeats is consisting of G (Gly), A (Ala), and F (Phe) in a ratio of 1:3:2 [SEQ ID NO: 46], or in Formula 2, n is 24, and each X of the pentapeptide repeats is consisting of G (Gly), A (Ala), and F (Phe) in a ratio of 1:3:2 [SEQ ID NO: 47].
4. The fusion polypeptide according to claim 1, wherein the fusion polypeptide is consisting of an amino acid sequence corresponding to SEQ ID NO: 52 or SEQ ID NO: 53.
5. The fusion polypeptide according to claim 1, wherein the fusion polypeptide forms a self-assembled nanostructure having a core-shell structure, when the hydrophobic EBP forms a core structure and the hydrophilic EBP and the VEGF receptor-specific peptide form a shell structure by a temperature stimulus ranging from 18 to 50° C.
6. The fusion polypeptide according to claim 5, wherein the self-assembled nanostructure comprises a multivalent VEGF receptor-specific peptide as a shell.
7. A composition for treating diseases caused by neovascularization, comprising the fusion polypeptide of claim 1, wherein the fusion polypeptide forms a self-assembled nanostructure having a core-shell structure, when a hydrophobic EBP forms a core structure and a hydrophilic EBP and a VEGF receptor-specific peptide form a shell structure by a temperature stimulus ranging from 18 to 50° C., and the self-assembled nanostructure comprises a multivalent VEGF receptor-specific peptide as a shell, whereby binding affinity between the self-assembled nanostructure and a VEGF receptor increases, and VEGF fails to bind to the VEGF receptor, thereby inhibiting neovascularization.
8. The composition according to claim 7, wherein the diseases caused by neovascularization is any one or more selected from the group comprising diabetic retinopathy, retinopathy of prematurity, macular degeneration, choroidal neovascularization, neovascular glaucoma, eye diseases caused by corneal neovascularization, corneal transplant rejection, corneal edema, corneal opacity, cancer, hemangioma, hemangiofibroma, rheumatoid arthritis, and psoriasis.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1) The above and other objects, features and advantages of the present invention will become more apparent to those of ordinary skill in the art by describing in detail exemplary embodiments thereof with reference to the accompanying drawings, in which:
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DETAILED DESCRIPTION OF EXEMPLARY EMBODIMENTS
Example 1: Materials
(16) A pET-21a (+) vector and BL21 (DE3) E. Coli cells were obtained from Novagen Inc. (Madison, Wis., U.S.). Top10 competent cells and calcein-AM were purchased from Invitrogen (Carlsbad, Calif., U.S.) and HUVECs were purchased from American Type Culture Collection (ATCC) (Virginia, U.S.). All customized oligonucleotides were synthesized by Cosmo GeneTech (Seoul, South Korea) and recombinant human VEGF-165 (rhVEGF.sub.165) was obtained from Sino Biological Inc. (Beijing, China). Calf intestinal alkaline phosphatase (CIP), BamHI and XbaI were obtained from Fermentas (Ontario, Canada). AcuI and BseRI were purchased from New England Biolabs (Ipswich, Mass., U.S.). T4 DNA ligase was obtained from Elpis Bio-tech (Taejeon, South Korea). DNA miniprep, gel extraction, and PCR purification kits were obtained from Geneall Biotechnology (Seoul, South Korea). “Dyne Agarose High” was obtained from DYNE BIO, Inc. (Seongnam, South Korea). Top10 cells were grown in “TB DRY” media obtained from MO BIO Laboratories, Inc. (Carlsbad. Calif., U.S.). BL21 (DE3) cells were grown in “CircleGrow” media obtained from MP Biomedicals (Solon, Ohio, U.S.). “Ready Gels, Tris-HCl 2-20% precast gels” were from Bio-Rad (Hercules, Calif., U.S.). Phosphate buffered saline (PBS, pH 7.4), kanamycin, polyethyleneamine (PEI), FITC-dextran, formalin and bovine serum albumin (BSA) were obtained from Sigma-Aldrich (St Louis, Mo., U.S.). Matrigel was purchased from BD Biosciences (San Diego, Calif., U.S.). Avastin, also known as bevacizumab was purchased from Roche Pharma Ltd. (Reinach, Switzerland). Ketamine was obtained from Huons (Seongnam, South Korea). Xylazine was purchased from BAYER (Leverkusen, Germany). Tropicamide was purchased from Santen Pharmaceutical Co. Ltd (Kita-ku, Osaka, Japan). A stereomicroscope was obtained from Leica (Wetzlar, Germany). Recombinant human VEGF.sub.165 protein and recombinant human VEGF R1/Flt-1 F.sub.c were purchased from R&D System (Minneapolis, Minn., U.S.). Rabbit anti-human IgG F.sub.c-HRP chimeric protein and 3,3′,5,5′-tetramethylbenzidine (TMB) was obtained from ThermoFisher (Massachusetts, U.S.).
Example 2: Notation for Different EBP Blocks and Block Polypeptides Thereof
(17) Different EBPs having a pentapeptide repeat unit of Val-Pro-(Gly or Ala)-X.sub.aa-Gly[VP (G or A)XG] are named as follows. X.sub.aa may be any amino acid except Pro. First, pentapeptide repeats of Val-Pro-Ala-X.sub.aa-Gly (VPAXG) with plasticity are defined as an elastin-based polypeptide with plasticity (EBPP). On the other hand, pentapeptide repeats of Val-Pro-Gly-X.sub.aa-Gly (VPGXG) are called elastin-based polypeptides with elasticity (EBPEs). Second, in [X.sub.iY.sub.jZ.sub.k].sub.n, the capital letters in the parentheses represent the single letter amino acid codes of guest residues, i.e., amino acids at the fourth position (X.sub.aa or X) of an EBP pentapeptide, and subscripts corresponding to the capital letters indicate the ratio of the guest residues in an EBP monomer gene as a repeat unit. The subscript number n of [X.sub.iY.sub.jZ.sub.k].sub.n represents the total number of repeats of an EBP corresponding to SEQ ID NO. 1 [VPGXG VPGXG VPGXG VPGXG VPGXG VPGXG] or SEQ ID NO. 2[VPAXG VPAXG VPAXG VPAXG VPAXG VPAXG] according to the present invention. For example, EBPP[G.sub.1A.sub.3F.sub.2].sub.12 is an EBPP block including 12 repeats of a pentapeptide unit, SEQ ID NO. 2 [VPAXG VPAXG VPAXG VPAXG VPAXG VPAXG], in which a ratio of Gly, Ala, and Phe at the fourth guest residue position (X.sub.aa) is 1:3:2. Finally, EBP-EBP diblock polypeptides are named according to the composition of each block in brackets with a hyphen between blocks as in EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.12.
Example 3: Preparation of Modified pET-21a Vector for Cloning Seamless Gene
(18) 4 μg of a pET-21a vector was digested and dephosphorylated with 50 U of XbaI, 50 U of BamHI and 10 U of a thermosensitive alkaline phosphatase in FastDigest buffer for 20 minutes at 37° C. The digested plasmid DNA was purified using a PCR purification kit, and then was eluted in 40 μl of distilled and deionized water. Two oligonucleotides with XbaI and BamHI compatible sticky ends were designed, i.e., SEQ ID NO. 39 (5′-ctagaaataattttgtttaactttaagaaggaggagtacatatgggctactgataatgatcttcag-3′) and SEQ ID NO. 40 (5′-gatcctgaagatcattatcagtagcccatatgtactcctccttcttaaagttaaacaaaattattt-3′). To anneal the two types of oligonucleotides, each oligonucleotide was prepared at a concentration of 2 μM in 50 μl of T4 DNA ligase buffer, heat treated at 95° C. for 2 minutes and then slowly cooled to room temperature over 3 hours. To ligate the annealed dsDNA, i.e., a DNA insert, into multiple cloning sites within the linearized pET-21a vector, 20 pmol of the annealed dsDNA and 0.1 pmol of the linearized pET-21a vector were incubated in T4 DNA ligase buffer containing 1 U of T4 DNA ligase for 30 minutes at 37° C. The modified pET-21a (mpET-21a) vector for cloning and expressing a seamless gene was transformed into Top10 competent cells, followed by plating the Top10 competent cells on a super optimal broth with catabolite repression (SOC) plate supplemented with 50 μg/ml ampicillin. The DNA sequence of the mpET-21a vector was then verified by fluorescent dye terminator DNA sequencing (Applied Biosystems Automatic DNA Sequencer ABI3730).
Example 4: Synthesis of EBP Monomer Gene and Oligomerization Thereof
(19) EBP sequences having a pentapeptide repeat unit, Val-Pro-(Gly or Ala)-X.sub.aa-Gly, in which the fourth residues were varied in different molar ratios, were designed at the DNA level to optimize T.sub.t below a physiological temperature. The DNA and amino acid sequences of EBPs with various pentapeptide repeat units for 17 EBP libraries are shown in Tables 1 and 2, respectively.
(20) TABLE-US-00003 TABLE 1 Gene sequences corresponding to EBP libraries. Both EBPs with plasticity (EBPPs) having a pentapeptide repeat of Val-Pro-Ala-X.sub.aa-Gly, and EBPs with elasticity (EBPEs) having a pentapeptide repeat of Val-Pro-Gly-X.sub.aa-Gly were cloned to have the same guest residue composition and ratio. SEQ ID EBP Gene Sequence NO. EBPE[A.sub.1G.sub.4I.sub.1] GTC CCA GGT GGA GGT GTA CCC GGC GCG GGT GTC CCA GGT GGA GGT 3 GTA CCT GGG GGT GGG GTC CCT GGT ATT GGC GTA CCT GGA GGC GGC EBPP[A.sub.1G.sub.4I.sub.1] GTT CCA GCT GGC GGT GTA CCT GCT GCT GCT GTT CCG GCC GGT GGT 4 GTT CCG GCG GGC GGC GTG CCT GCA ATA GGA GTT CCC GCT GGT GGC EBPE[K.sub.1G.sub.4I.sub.1] GTT CCG GGT GGT GGT GTT CCG GGT AAA GGT GTT CCG GGT GGT GGT 5 GTT CCG GGT GGT GGT GGT GTT CCG GGT ATC GGT GTT CCG GGT GGC EBPP[K.sub.1G.sub.4I.sub.1] GTT CCG GCG GGT GGT GTT CCG GCG AAA GGT GTT CCG GCG GGT GGT 6 GTT CCG GCG GGT GGT GTT CCG GCG ATC GGT GTT CCG GCG GGT GGC EBPE[D.sub.1G.sub.4I.sub.1] GTT CCG GGT GGT GGT GTT CCG GGT GAT GGT GTT CCG GGT GGT GGT 7 GTT CCG GGT GGT GGT GGT GTT CCG GGT ATC GGT GTT CCG GGT GGC EBPP[D.sub.1G.sub.4I.sub.1] GTT CCG GCG GGT GGT GTT CCG GCG GAT GGT GTT CCG GCG GGT GGT 8 GTT CCG GCG GGT GGT GTT CCG GCG ATC GGT GTT CCG GCG GGT GGC EBPE[E.sub.1G.sub.4I.sub.1] GTT CCG GGT GGT GGT GTT CCG GGT GAA GGT GTT CCG GGT GGT GGT 9 GTT CCG GGT GGT GGT GGT GTT CCG GGT ATC GGT GTT CCG GGT GGC EBPP[E.sub.1G.sub.4I.sub.1] GTT CCG GCG GGT GGT GTT CCG GCG GAA GGT GTT CCG GCG GGT GGT 10 GTT CCG GCG GGT GGT GTT CCG GCG ATC GGT GTT CCG GCG GGT GGC EBPE[G.sub.1A.sub.3F.sub.2] GTC CCG GGT GCG GGC GTG CCG GGA TTT GGA GTT CCG GGT GCG GGT 11 GTT CCA GGC GGT GGT GTT CCG GGC GCG GGC GTG CCG GGC TTT GGC EBPP[G.sub.1A.sub.3F.sub.2] GTG CCG GCG GCG GGC GTT CCA GCC TTT GGT GTG CCA GCG GCG GGA 12 GTT CCG GCC GGT GGC GTG CCG GCA GCG GGC GTG CCG GCT TTT GGC EBPP[K.sub.1A.sub.3F.sub.2] GTG CCG GCG GCG GGC GTT CCA GCC TTT GGT GTG CCA GCG GCG GGA 13 GTT CCG GCC AAA GGC GTG CCG GCA GCG GGC GTG CCG GCT TTT GGC EBPP[D.sub.1A.sub.3F.sub.2] GTG CCG GCG GCG GGC GTT CCA GCC TTT GGT GTG CCA GCG GCG GGA 14 GTT CCG GCC GAT GGC GTG CCG GCA GCG GGC GTG CCG GCT TTT GGC EBPP[K.sub.3F.sub.3] GTT CCA GCG TTT GGC GTG CCA GCG AAA GGT GTT CCG GCG TTT GGG 15 GTT CCC GCG AAA GGT GTG CCG GCC TTT GGT GTG CCG GCC AAA GGC EBPP[D.sub.3F.sub.3] GTT CCA GCG TTT GGC GTG CCA GCG GAT GGT GTT CCG GCG TTT GGG 16 GTT CCC GCG GAT GGT GTG CCG GCC TTT GGT GTG CCG GCC GAT GGC EBPP[H.sub.3A.sub.3I.sub.1] GTG CCG GCG CAT GGA GTT CCT GCC GCC GGT GTT CCT GCG CAT GGT 17 GTA CCG GCA ATT GGC GTT CCG GCA CAT GGT GTG CCG GCC GCC GGC EBPP[H.sub.5G.sub.1] GTT CCG GCC GGA GGT GTA CCG GCG CAT GGT GTT CCG GCA CAT GGT 18 GTG CCG GCT CAC GGT GTG CCT GCG CAT GGC GTT CCT GCG CAT GGC EBPP[G.sub.1C.sub.3F.sub.2] GTG CCG GCG TGC GGC GTT CCA GCC TTT GGT GTG CCA GCG TGC GGA 19 GTT CCG GCC GGT GGC GTG CCG GCA TGC GGC GTG CCG GCT TTT GGC
(21) TABLE-US-00004 TABLE 2 Amino acid sequences corresponding to EBP libraries SEQ ID EBP Amino acid Sequence NO. EBPE[A.sub.1G.sub.4I.sub.1] VPGGG VPGAG VPGGG VPGGG VPGIG VPGGG 20 EBPP[A.sub.1G.sub.4I.sub.1] VPAGG VPAAG VPAGG VPAGG VPAIG VPAGG 21 EBPE[K.sub.1G.sub.4I.sub.1] VPGGG VPGKG VPGGG VPGGG VPGIG VPGGG 22 EBPP[K.sub.1G.sub.4I.sub.1] VPAGG VPAKG VPAGG VPAGG VPAIG VPAGG 23 EBPE[D.sub.1G.sub.4I.sub.1] VPGGG VPGDG VPGGG VPGGG VPGIG VPGGG 24 EBPP[D.sub.1G.sub.4I.sub.1] VPAGG VPADG VPAGG VPAGG VPAIG VPAGG 25 EBPE[E.sub.1G.sub.4I.sub.1] VPGGG VPGEG VPGGG VPGGG VPGIG VPGGG 26 EBPP[E.sub.1G.sub.4I.sub.1] VPAGG VPAEG VPAGG VPAGG VPAIG VPAGG 27 EBPE[G.sub.1A.sub.3F.sub.2] VPGAG VPGFG VPGAG VPGGG VPGAG VPGFG 28 EBPP[G.sub.1A.sub.3F.sub.2] VPAAG VPAFG VPAAG VPAGG VPAAG VPAFG 29 EBPP[K.sub.1A.sub.3F.sub.2] VPAAG VPAFG VPAAG VPAGG VPAAG VPAFG 30 EBPP[D.sub.1A.sub.3F.sub.2] VPAAG VPAFG VPAAG VPAGG VPAAG VPAFG 31 EBPP[K.sub.3F.sub.3] VPAFG VPAKG VPAFG VPAKG VPAFG VPAKG 32 EBPP[D.sub.3F.sub.3] VPAFG VPADG VPAFG VPADG VPAFG VPADG 33 EBPP[H.sub.3A.sub.3I.sub.1] VPAHG VPAAG VPAHG VPAIG VPAHG VPAAG 34 EBPP[H.sub.5G.sub.1] VPAGG VPAHG VPAHG VPAHG VPAHG VPAHG 35 EBPP[G.sub.1C.sub.3F.sub.2] VPACG VPAFG VPACG VPAGG VPACG VPAFG 36
(22) In Table 1, SEQ ID NO. 3 to 10 may be classified as gene sequences for hydrophilic EBP blocks, and SEQ ID NO. 11 to 19 may be classified as gene sequences for hydrophobic EBP blocks, in which Phe and His are incorporated. In Table 2, amino acid SEQ ID NO. 20 to 27 may be classified as hydrophilic EBP blocks, and amino acid SEQ ID NO. 28 to 36, in which Phe and His are incorporated, may be classified as hydrophobic EBP blocks. In particular, in Table 2, SEQ ID NO. 22 and 23 are classified as positively charged hydrophilic EBP blocks, and SEQ ID NO. 24 to 27 are classified as negatively charged hydrophilic EBP blocks. That is, as described above, when the LCST of an EBP is lower than the body temperature, the EBP exhibits hydrophobicity, and when the LCST of an EBP is higher than the body temperature, the EBP exhibits hydrophilicity. Due to this nature of EBPs, the hydrophilic and hydrophobic properties of EBPs may be relatively defined when EBPs are applied to biotechnology.
(23) Different EBPs having a pentapeptide repeat unit, Val-Pro-(Gly or Ala)-X.sub.aa-Gly [where X.sub.aa may be any amino acid except Pro], which are capable of responding to unique stimuli including temperature and pH, were designed at the DNA level. EBPs with plasticity (EBPPs) having a pentapeptide repeat unit of Val-Pro-Ala-X.sub.aa-Gly and EBPs with elasticity (EBPEs) having a pentapeptide repeat unit of Val-Pro-Gly-X.sub.aa-Gly were all cloned to have the same guest residue composition and ratio. Tables 1 and 2 represent the gene and amino acid sequences of different EBPs having respective pentapeptide units. For example, EBPE[G.sub.1A.sub.3F.sub.2].sub.12 and EBPP[G.sub.1A.sub.3F.sub.2].sub.12 not only show almost the same molar mass, but also the fourth residues of these EBP pentapeptide units represent the same combination. In addition, these EBP blocks have different mechanical properties because the third amino acid residues (Ala or Gly) of the pentapeptide units are different. Positively and negatively charged EBPs were prepared by introducing charged amino acids such as Lys, Asp, GIu, and His as guest residues.
(24) To anneal each pair of oligonucleotides encoding various EBPs, each oligonucleotide was prepared at a concentration of 2 μM in 50 μl of T4 DNA ligase buffer, heat treated at 95° C. for 2 minutes and then slowly cooled to room temperature over 3 hours. 4 μg of a modified pET-21a vector was digested and dephosphorylated with 15 U of BseRI and 10 U of FastAP thermosensitive alkaline phosphatase for 30 minutes at 37° C. The digested plasmid DNA was purified using a PCR purification kit, and then was eluted in 40 μl of distilled and deionized water. To ligate the annealed dsDNA, i.e., a DNA insert, into multiple cloning sites within the linearized mpET-21a vector, 90 pmol of the annealed dsDNA and 30 pmol of the linearized mpET-21a vector were incubated in T4 DNA ligase buffer containing 1 U of T4 DNA ligase for 30 minutes at 16° C. The ligated plasmid was transformed into Top10 chemically competent cells, followed by plating the Top10 competent cells on an SOC plate supplemented with 50 μg/ml ampicillin. DNA sequences were then confirmed by DNA sequencing. After all EBP monomer genes were constructed, each EBP gene was synthesized by ligating each of 36 types of repetitive genes (as an insert) into the corresponding vector containing each of the same 36 types of repetitive genes, as follows. A cloning procedure for EBP libraries and fusions thereof are illustrated in
(25) As described above, EBP gene libraries having different DNA sizes were synthesized using the designed plasmid vector and three different restriction endonucleases.
(26) EBP genes and block co-polypeptides thereof were overexpressed in E. coli having a T7 promoter and purified by multiple cycles of inverse transition cycling (ITC).
(27) EBP libraries were characterized.
Example 5: Gene Construction of Anti-Flt1-EBPP[A.SUB.1.G.SUB.4.I.SUB.1.]n and Anti-Flt1-EBP Diblock Block (Copolypeptides)
(28) A pair of oligonucleotides encoding an anti-Flt1 peptide acting as a VEGFR1 antagonist were chemically synthesized by Cosmo Genetech (Seoul, Korea), and linked to an oligonucleotide cassette with cohesive ends including restriction sites recognized by AcuI and BseRI. An oligonucleotide cassette encoding the anti-Flt1 peptide was rationally designed to have no restriction sites recognized by BseRI, XbaI, AcuI and BamHI for seamless gene cloning, as shown in Table 3.
(29) TABLE-US-00005 TABLE 3 Gene and amino acid sequences of CPPs SEQ ID NO. Sequence Type Sequence 37 Gene Sequence GGC AAT CAG TGG TTT ATT 38 Amino acid G N Q W F I Sequence
(30) In Table 4, the sequences, gene lengths and molecular weights of fusion polypeptides with a hydrophilic EBP block or an EBP diblock of hydrophilic EBP block-hydrophobic EBP block are shown.
(31) TABLE-US-00006 TABLE 4 Sequences, gene lengths and molecular weights of fusion polypeptides Nucleotide Fusion protein (SEQ ID NO.) length (bp) M.W (kDa) Anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3 (SEQ ID NO. 48) 288 8.19 Anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.6 (SEQ ID NO. 49) 558 15.27 Anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.12 (SEQ ID NO. 50) 1098 29.42 Anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.24 (SEQ ID NO. 51) 2178 57.72 Anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.12 2178 59.90 (SEQ ID NO. 52) Anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.24 3258 90.00 (SEQ ID NO. 53)
(32) Each plasmid containing an EBP with restriction sites recognized by BseRI, XbaI, AcuI and BamHI, and the oligonucleotide cassette were used to create genes for the fusion polypeptide libraries of anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3 and anti-Flt1-EBP diblock blocks. First, to anneal a pair of oligonucleotides encoding an anti-Flt1 peptide, each oligonucleotide was prepared at a concentration of 2 μM in 50 μl of T4 DNA ligase buffer, heat treated at 95° C. for 2 minutes and then the reaction solution was slowly cooled to room temperature over 3 hours. To clone the anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n, a plasmid vector encoding EBPP[A.sub.1G.sub.4I.sub.1].sub.3n was digested with 15 U of BseRI in CutSmart buffer for 30 minutes at 37° C. The digested plasmid DNA was purified using a PCR purification kit, and then dephosphorylated with 10 U of FastAP as a thermosensitive alkaline phosphatase in CutSmart buffer for 1 hour at 37° C. The digested and dephosphorylated plasmid DNA was purified using a PCR purification kit, and then eluted in 40 μl of distilled and deionized water. Ligation was performed by incubating 90 pmol of the purified insert and 30 pmol of the linearized vector in T4 DNA ligase buffer containing 1 U of T4 DNA ligase at 16° C. for 30 minutes. The product was transformed into Top10 chemically competent cells and the cells were plated on SOC plates supplemented with 50 μg/ml ampicillin Transformants were initially screened by diagnostic restriction digestion on an agarose gel and further confirmed by DNA sequencing as described above.
(33) Similarly, to clone anti-Flt1-EBP diblock blocks with hydrophobic blocks of different lengths, plasmid vectors encoding EBPP[G.sub.1A.sub.3F.sub.2].sub.n were digested with 10 U of XbaI and 15 U of BseRI in CutSmart buffer for 30 minutes at 37° C. The digested plasmid DNA was purified using a PCR purification kit, and then dephosphorylated with 10 U of FastAP as a thermosensitive alkaline phosphatase in CutSmart buffer for 1 hour at 37° C. The digested and dephosphorylated plasmid DNA was purified using a PCR purification kit, and then eluted in 40 μl of distilled and deionized water. 4 μg of EBPP[E.sub.1G.sub.4I.sub.1].sub.n genes were digested with 10 U of XbaI and 15 U of AcuI in CutSmart buffer for 30 minutes at 37° C. After digestion, the reaction product was separated by agarose gel electrophoresis and an insert was purified using a gel extraction kit. Ligation was performed by incubating 90 pmol of the purified insert and 30 pmol of the linearized vector in T4 DNA ligase buffer containing 1 U of T4 DNA ligase at 16° C. for 30 minutes. The product was transformed into Top10 chemically competent cells and the cells were plated on SOC plates supplemented with 50 μg/ml ampicillin Transformants were initially screened by diagnostic restriction digestion on an agarose gel and further confirmed by DNA sequencing. Plasmid vectors encoding anti-Flt1-EBP diblock blocks were prepared using BseRI, and ligation and confirmation of ligation were performed as described above.
Example 6: Expression of Genes Encoding EBPs, Anti-Flt1-EBPP[A.SUB.1.G.SUB.4.I.SUB.1.].SUB.3n .and Anti-Flt1-EBP Diblock Block and Purification of Gene Expression Products
(34) E. coli strain BL21 (DE3) cells were transformed with each vector containing an EBP, anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n or an anti-Flt1-EBP diblock block, and then inoculated in 50 ml of CircleGrow media supplemented with 50 μg/ml ampicillin Preculture was performed in a shaking incubator at 200 rpm overnight at 37° C. 500 ml of CircleGrow media with 50 μg/ml ampicillin was then inoculated with 50 ml of the precultured CircleGrow media and incubated in a shaking incubator at 200 rpm for 16 hours at 37° C. When optical density at 600 nm (OD.sub.600) reached 1.0, overexpression of an EBP gene or a block polypeptide gene thereof was induced by addition of IPTG at a final concentration of 1 mM. The cells were centrifuged at 4500 rpm for 10 minutes at 4° C. The expressed EBPs and block polypeptides thereof were purified by inverse transition cycling (ITC) as reported previously. The cell pellet was resuspended in 30 ml of HEPES buffer, and the cells were lysed by sonication for 10 s in 20 s intervals (VC-505, Sonics & Materials, Inc, Danbury, Conn.) on ice. The cell lysate was centrifuged in a 50 ml centrifuge tube at 13,000 rpm for 15 min at 4° C. to precipitate the insoluble debris of the cell lysate. Supernatant containing soluble EBPs was then transferred to a new 50 ml centrifuge tube and centrifuged with 0.5% w/v of PEI at 13,000 rpm for 15 minutes at 4° C. to precipitate nucleic acid contaminants. The inverse phase transition of the EBPs were triggered by adding sodium chloride at a final concentration of 4 M, and aggregated EBPs were separated from the lysate solution by centrifugation at 13,000 rpm for 15 minutes at 4° C. The aggregated EBPs were resuspended in cold PBS buffer, and the EBP solutions were centrifuged at 13,000 rpm for 15 minutes at 4° C. to remove any aggregated protein contaminants. These aggregation and resuspension processes were repeated 5 to 10 times until EBP purity reached about 95%, and the purity was determined by SDS-polyacrylamide gel electrophoresis (SDS-PAGE).
(35)
(36) As shown in
(37) Modified pET-21a (mpET-21a) plasmids harboring EBPP[A.sub.1G.sub.4I.sub.1].sub.n, EBPP[E.sub.1G.sub.4I.sub.1].sub.n or EBPP[G.sub.1A.sub.3F.sub.2].sub.n (where the subscript number n of [X.sub.iY.sub.jZ.sub.k].sub.n is 6, 12, 18, 24, 30 or 36) were seamlessly cloned using standard molecular biology methodology. In particular, multimerization and fusion of EBPP genes were executed using recursive directional ligation (RDL) to construct genes encoding EBPPs with different molecular weights and EBPP block copolymers.
(38) In VEGFR-targeting peptide (anti-Flt1 peptide)-hydrophilic EBP-fusion polypeptide, anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3, 6, 12, 24 is soluble under physiological conditions and acts as a VEGFR antagonist to compete with VEGF, thereby inhibiting delivery of neovascularization signals to cells (
Example 7: Characterization of EBPs, Anti-Flt1-EBPP[A.SUB.1.G.SUB.4.I.SUB.1.].SUB.3n .and Anti-Flt1-EBP Diblock Block
(39) The purity of EBPs, anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n and anti-Flt1-EBP diblock blocks was determined by SDS-PAGE, and gel permeation chromatography (GPC) with a high-performance liquid chromatography (HPLC) 1260 series instrument (Agilent Technologies, Palo Alto, Calif., U.S.) using a Shodex GPC OHpak SB-804 HQ column (Showa Denko Co., Tokyo, Japan). Deionized water at 20° C. was used as an eluent at a flow rate of 1 ml/min and the GPC column was maintained at 20° C. Low dispersity pullulan in a range of 5,900 to 200,000 g/mol was used as a standard. A series of EBPs, anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n and anti-Flt1-EBP diblock blocks were analyzed using a refractive index detector (RID) and variable wavelength detector (VWD) at 280 nm. An effect of temperature on the inverse phase transition of various EBPs, anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n and anti-Flt1-EBP diblock blocks at 25 μM concentration in PBS was determined by measuring OD.sub.350 using a Cary 100 Bio UV/Vis spectrophotometer equipped with a multi-cell thermoelectric temperature controller (Varian Instruments, Walnut Creek, Calif.) between 10 to 85° C. at a heating rate of 1° C./min Self-assembly behaviors of anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-[G.sub.1A.sub.3F.sub.2].sub.12 and anti-Flt1-EBPP [E.sub.1G.sub.4I.sub.1].sub.12-[G.sub.1A.sub.3F.sub.2].sub.24 from soluble unimers into micelles were characterized using a temperature-controlled Nano ZS90 (ZEN3690) dynamic light scattering (DLS) instrument (Malvern instruments, Worcestershire, UK), and the hydrodynamic radius (R.sub.H) thereof at 25 μM in PBS was measured in 11 successive runs at each temperature in a temperature range from 18 to 50° C. at a heating rate of 1° C./min. In addition, T.sub.t thereof is defined as the onset temperature for phase transition, and calculated from each DLS plot.
(40) Genes for fusion polypeptides composed of an anti-Flt1 peptide and hydrophilic EBP blocks with different lengths were constructed by molecular cloning and the lengths of those genes digested with XbaI and BseRI were confirmed by agarose gel electrophoresis as shown in
(41)
(42) TABLE-US-00007 TABLE 5 (a) (b) (c) (d) (e) (f) (g) (h) 0M NaCl N/A N/A N/A 68 N/A N/A 67 57 1M NaCl N/A 80 52 42 N/A 57 45 39 2M NaCl N/A 53 34 28 49 34 28 23 T.sub.1 of (a) EBPP[A.sub.1G.sub.4I.sub.1].sub.3, (b) EBPP[A.sub.1G.sub.4I.sub.1].sub.6, (c) EBPP[A.sub.1G.sub.4I.sub.1].sub.12, (d) EBPP[A.sub.1G.sub.4I.sub.1].sub.24, (e) anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3, (f) anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.6, (g) anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.12 and (h) anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.24
(43) T.sub.t values in Table 5 are determined by measuring the inflection points of thermal profiles in
(44) In general, EBPP[A.sub.1G.sub.4I.sub.1].sub.3n and anti-Flt1-EBPP [A.sub.1G.sub.4I.sub.1].sub.3n without polar amino acid residues exhibit T.sub.t higher than 37° C. under physiological conditions because Ala, Gly and Ile were introduced to the EBPPs as the guest residue of the repetitive pentapeptide unit of the EBPPs in a ratio of 1:4:1. Anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n was hydrophilic and VEGFR binding-fusion polypeptides thereof were soluble under physiological conditions, which allowed the polypeptides to specifically bind to VEGFRs without any steric hindrance. Thus, the fusion polypeptides of the present invention may act as VEGFR antagonists against VEGF. Furthermore, when the effect of EBPP block length and ionic strength on thermal responsiveness was analyzed, as the EBP block length of EBPP[A.sub.1G.sub.4I.sub.1].sub.3n and anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n, and sodium chloride concentration in PBS increased, T.sub.t thereof decreased. In particular, the T.sub.t of anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n was much lower than that of EBPP[A.sub.1G.sub.4I.sub.1].sub.3n because Gly-Asn-Gln-Trp-Phe-Ile (GNQWFI) of an anti-Flt1 peptide sequence for targeting VEGFRs was hydrophobic, resulting in a decrease in the T.sub.t of anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n. For example, the T.sub.t of anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.12 and the T.sub.t of anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.24 were about 18 and 11° C. lower than those of EBPP[A.sub.1G.sub.4I.sub.1].sub.12 and EBPP[A.sub.1G.sub.4I.sub.1].sub.24 in PBS, respectively. A T.sub.t difference (DT.sub.t) between EBPP[A.sub.1G.sub.4I.sub.1].sub.3 and anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3 was more than 36° C. in PBS with 2 M sodium chloride, whereas DT.sub.t between EBPP[A.sub.1G.sub.4I.sub.1].sub.3 and anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3 was 23° C. in PBS with 1 M sodium chloride. Therefore, as EBPP[A.sub.1G.sub.4I.sub.1] block length became shorter, the T.sub.t of anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n was greatly decreased irrespective of various concentrations of sodium chloride. This data indicates that the effect of hydrophobicity of the anti-Flt1 peptide on the thermal transition of the EBPP[A.sub.1G.sub.4I.sub.1] block is potentially greater.
(45) Next, the properties of fusion polypeptides composed of VEGFR-targeting peptide (anti-Flt1 peptide)-hydrophilic EBP-hydrophobic EBP are described. Two different genes, which encode a fusion polypeptide composed of “anti-Flt1 peptide” and “amphiphilic EBP diblock” of hydrophilic EBP-hydrophobic EBP having hydrophobic EBP blocks with various chain lengths, were constructed using RDL, a seamless molecular cloning method. The full lengths of those genes digested by XbaI and BseRI were confirmed by agarose gel electrophoresis as shown in
(46)
(47) TABLE-US-00008 TABLE 6 (a) (b) (c) (d) Conc. (uM) 25 25 12.5 25 50 100 12.5 25 50 100 First T.sub.t 39.02 29.12 34.2 36.2 37.4 39.5 26.7 28.0 29.1 29.2 (° C.) Second T.sub.t N/A N/A 78.2 81.2 82.3 84.4 74.6 78.0 79.2 81.2 (° C.) T.sub.1 of (a) EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.12, (b) EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.24, (c) anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.12 and (d) anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.24
(48) T.sub.t values in Table 6 are determined by measuring the inflection points of thermal profiles in
(49) As the concentration of anti-Flt1-EBP diblock blocks increased, the first T.sub.t and the second T.sub.t gradually decreased. In general, the temperature-triggered phase transition of anti-Flt1-EBP diblock copolypeptides occurs twice, because aliphatic- and hydrophobic EBPP[A.sub.1G.sub.3F.sub.2] block having a low T.sub.t and polar- and hydrophilic EBPP[E.sub.1G.sub.4I.sub.1] block having a high T.sub.t exhibit different thermal properties. The phase transition of anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-[G.sub.1A.sub.3F.sub.2].sub.12 occurred at 36.2 and 81.2° C. at the 25 μM concentration, whereas the phase transition of anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-[G.sub.1A.sub.3F.sub.2].sub.24 occurred at 28.0 and 78.0° C. at the same concentration. This data indicates that the doubled block length of the hydrophobic EBPP[A.sub.1G.sub.3F.sub.2] has a significant effect on the first T.sub.t and the second T.sub.t, lowering the same by 8.2 and 3.2° C., respectively. In particular, diblock polypeptides of EBPP[E.sub.1G.sub.4I.sub.1].sub.12-[G.sub.1A.sub.3F.sub.2].sub.12 and EBPP[E.sub.1G.sub.4I.sub.1].sub.12-[G.sub.1A.sub.3F.sub.2].sub.24 without anti-Flt1 fusion, as a control, exhibited a first T.sub.t of only 39.0 and 29.1° C. without an additional phase transition, as shown in
(50) In accordance with the unique thermal transition of anti-Flt1-EBP diblock copolypeptides, the self-assembly behaviors of anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-[G.sub.1A.sub.3F.sub.2].sub.12 and anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-[G.sub.1A.sub.3F.sub.2].sub.24 from soluble unimers into micelles were characterized by dynamic light scattering (DLS). The hydrodynamic radius (R.sub.H) thereof at 25 μM in PBS was measured in 11 successive runs at each temperature in a temperature range from 18 to 50° C. at a heating rate of 1° C./min. T.sub.t thereof was defined as the onset temperature for phase transition, calculated from each DLS plot in
(51) TABLE-US-00009 TABLE 7 (a) (b) First T.sub.t (° C.) Second T.sub.t (° C.) First T.sub.t (° C.) Second T.sub.t (° C.) Absorbance 36.2 82.3 28.0 79.2 DLS 36.0 N/A 27.0 N/A T.sub.t of (a) anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.12 and (b) anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.24
(52) Referring to Table 7, the first aggregation of fusion polypeptides increases the hydrodynamic radius thereof due to micelle formation.
(53) Anti-Flt1-EBP diblock copolypeptides existed in soluble unimer forms below the first T.sub.t of 36° C. for anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-[G.sub.1A.sub.3F.sub.2].sub.12 and below the first T.sub.t of 27° C. for anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-[G.sub.1A.sub.3F.sub.2].sub.24, and the hydrodynamic radius (R.sub.H) thereof at 25 μM in PBS was about 10 nm. As temperature increased above the first T.sub.t, the R.sub.H thereof instantaneously increased in a range of 160 and 240 nm at a slightly higher temperature than the first T.sub.t, then decreased to 28.4 and 43.6 nm. The anti-Flt1-EBP diblock copolypeptides formed metastable micelles due to non-equilibrium thermodynamics of amphiphile-based self-assembly and different hydrophilic-to-hydrophobic block length ratios, and then the copolypeptides formed stable micelles with constant R.sub.H values even at 50° C. because self-assembly thereof reached equilibrium. The R.sub.H of an anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.24 micelle was 15.2 nm larger than that of the anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.12 micelle due to the doubled block length of EBPP[G.sub.1A.sub.3F.sub.2] and the bigger aggregated domain of the EBPP[G.sub.1A.sub.3F.sub.2] block at the core of the micellar structure thereof. Furthermore, to determine the critical micelle concentrations (CMCs) of the anti-Flt1-EBP diblock copolypeptides, the micelle sizes thereof at various concentrations in a range of 0.1 to 25 μM were measured at 20° C. below T.sub.t and 37° C. above T.sub.t. Under environmental conditions of 0.5 μM and 37° C., the anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-[G.sub.1A.sub.3F.sub.2].sub.12 still formed a metastable micelle with a R.sub.H of ˜125 nm and the anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.24 formed a stabilized micelle with a R.sub.H of ˜44 nm. However, no micelle formation was observed for the two anti-Flt1-EBP diblock copolypeptides at 0.1 μM and 37° C., indicating that the 0.1 μM concentration was lower than CMCs thereof, and the CMCs were in a range of 0.1 to 0.5 μM. Therefore, the anti-Flt1-EBP diblock copolypeptides formed temperature-triggered core-corona micellar structures with multivalent anti-Flt1 peptides for targeting Flt1 under physiological conditions because of the amphiphilic properties of hydrophilic EBPP[E.sub.1G.sub.4I.sub.1] and hydrophobic EBPP[G.sub.1A.sub.3F.sub.2]. In particular, in the anti-Flt1-EBP diblock copolypeptides, different block lengths of hydrophobic EBPP[G.sub.1A.sub.3F.sub.2] finely controlled micellar size, which affected the binding affinity thereof to Flt1, resulting in high adhesion.
Example 8: Determination of Specific Binding of Anti-Flt1-EBPP[A.SUB.1.G.SUB.4.I.SUB.1.].SUB.3n .and Anti-Flt1-EBP Diblock Block to Flt1
(54) Specific binding of anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n (n: 1, 2, 4, and 8) and anti-Flt1-EBP diblock copolypeptides to Flt1 was determined by enzyme-linked immunosorbent assay (ELISA). First, to coat a 96 well plate with recombinant human VEGF165 protein (rhVEGF.sub.165) (M.W. 38.4 kDa) present in a disulfide-linked homodimer, 50 μl of a solution containing the rhVEGF.sub.165 at a concentration of 0.5 μg/ml was added to the 96 well plate, and the plated was incubated at 4° C. overnight. The wells of the 96 well plate coated with the rhVEGF.sub.165 were washed with PBS containing 0.05% Tween-20 to completely remove unattached rhVEGF.sub.165, and then the wells were incubated with PBS containing 3 wt % BSA at room temperature for 2 hours to block the surface of each well, which was not coated with the rhVEGF.sub.165. After incubation, the wells were washed with PBS containing 0.05% Tween-20 to remove unbound BSA. Next, to impart specific binding affinity between an anti-Flt1 peptide and Flt1 (VEGFR1), a recombinant human Flt1-F.sub.c chimeric protein (M.W. 200.0 kDa) present in a disulfide-linked homodimer at a concentration of 0.5 μg/ml was pre-incubated with (1) anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n (n: 1, 2, 4, and 8) in PBS containing 1 wt % BSA or with (2) anti-Flt1-EBP diblock copolypeptides (anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP [G.sub.1A.sub.3F.sub.2] 12 and anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.24) with hydrophobic blocks of different lengths. In this case, the pre-incubation was carried out at room temperature for 2 hours at different concentrations within a range of 0.5 to 500 μM. Thereafter, the mixed solution was added to rhVEGF.sub.165-coated wells, followed by additional incubation at room temperature for 2 hours. The EBPP[A.sub.1G.sub.4I.sub.1].sub.12 and EBP diblock copolypeptide (EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.12 and anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.24) with hydrophobic blocks (having the same concentration) of different lengths were used as a standard. Each well was washed with PBS supplemented with 0.05% Tween-20 to remove Flt1-F.sub.c protein that was not bound to rhVEGF.sub.165 on the surface of the well. Whether human Flt1-F.sub.c protein was specifically bound to the rhVEGF.sub.165-coated well was determined by measuring the absorbance of oxidized chromogenic substrates upon protein-antibody binding at 450 nm using rabbit anti-human IgG F.sub.c-horseradish peroxidase (HRP) conjugates as a secondary antibody. PBS (containing 0.3 w % BSA) diluted with anti-human IgG F.sub.c-HRP was added to each well and incubated for 1 hour at room temperature, followed by washing 8 times with PBS containing 0.05 Tween-20. 3,3′,5,5′-tetramethylbenzidine (TMB) was added to each well to indirectly determine the degree of specific binding of Flt1-F.sub.c protein to VEGF by measuring the specific interaction between the Flt1-F.sub.c protein and the anti-human IgG F.sub.c-HRP protein, and HRP-catalyzed oxidation of the TMB. The color intensity of the oxidized TMB was measured at 450 nm. Each ELISA experiment was performed three times for reproducibility.
(55) The specific binding properties of a fusion polypeptide of VEGFR-targeting peptide (anti-Flt1 peptide)-hydrophilic EBP are examined. As shown in
(56) Next, the binding properties of fusion polypeptides of VEGFR-targeting peptide (anti-Flt1 peptide)-hydrophilic EBP-hydrophobic EBP are examined With specific binding of soluble anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n to a human Flt1-F.sub.c chimeric protein, anti-Flt1-EBP diblock blocks (anti-Flt1-EBPP [E.sub.1G.sub.4I.sub.1].sub.12-EBPP[G.sub.1A.sub.3F.sub.2].sub.12 and anti-Flt1-EBPP[E.sub.1G.sub.4I.sub.1].sub.12-EBPP [G.sub.1A.sub.3F.sub.2].sub.24) with hydrophobic blocks of different lengths formed temperature-triggered core-shell micellar structures with multivalent anti-Flt1 peptides under physiological conditions. Multivalent anti-Flt1 located on the outer shell of the formed self-assembled micelles increased the binding affinity of the fusion polypeptides to human Flt1 (VEGFR1). As measured by enzyme-linked immunosorbent assay (ELISA) in
Example 9: In Vitro Tubing Assay of HUVECs Using Anti-Flt1-EBPP[A.SUB.1.G.SUB.4.I.SUB.1.].SUB.12
(57) In vitro tubing assay of HUVECs using soluble anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.12 was performed to evaluate effects of the soluble anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.12 copolypeptides on proliferation, migration and tube formation of endothelial cells. For Matrigel coating, 200 μl of 8.7 mg/ml Matrigel was added to a 48 well plate and incubated at 37° C. for 1 hour to become solidified. To label HUVECs with fluorescence, HUVECs were incubated with 10 μM calcein-AM at 37° C. for 15 minutes and washed with PBS several times. The calcein-labeled HUVECs at 2×10.sup.4 cells/well were grown on the Matrigel-coated wells, and incubated at 37° C. for 4 hours with 50 ng/ml recombinant human rhVEGF.sub.165 and anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.12 as a Flt1-specific antagonist at different concentrations. After incubation, it was determined whether proliferation, migration and tube formation of endothelial cells were stimulated. To clarify to what extent anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.12 could inhibit tube formation of HUVECs, the same concentration of EBPP[A.sub.1G.sub.4I.sub.1].sub.12 was assessed as a control. In addition, Avastin, a recombinant humanized monoclonal antibody (mAb) against VEGF, was used as another control to compare therapeutic efficacy for anti-neovascularization based on the therapeutic efficacy of anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.12, as a Flt1-specific antagonist. The tube formation of HUVECs was photographed with Micromanipulator (Olympus, Tokyo, Japan), and quantified by measuring whole tube lengths in three random fields per well with Image lab software (Bio-Rad Laboratories, Hercules, Calif., USA). When the tubing assay was performed, the tube formation of HUVECs incubated in PBS for 4 hours was used as a control. The experiment was repeated three times.
(58) As shown in
Example 10: In Vivo Anti-Neovascularization Using Anti-Flt1-EBPP[A.SUB.1.G.SUB.4.I.SUB.1.].SUB.12 .in Laser-Induced Choroidal Neovascularization Model
(59) 6- to 8-week-old female C57BL-6 mice were anesthetized with intraperitoneal injection of ketamine at 100 mg/kg and xylazine at 10 mg/kg, and the pupils were dilated with 5 mg/ml tropicamide, and 532 nm laser diode (150 to 210 mW, 0.1 sec, 50 to 100 μM) was applied to each fundus to induce choroidal neovascularization in vivo. Multiple burns were performed in the 6, 9, 12, and 3 o'clock positions of the posterior pole of the eye with a slit-lamp delivery system. Production of bubbles at the time of laser, which indicates Bruch's membrane rupturing, is an important factor in obtaining the CNV model. To evaluate an effect of anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n copolypeptides on anti-neovascularization in a laser-induced choroidal neovascularization model in vivo, the CNV model mice were injected in an intravitreal manner with PBS as a vehicle, EBPP[A.sub.1G.sub.4I.sub.1].sub.12 or various concentrations of anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.12 once a day for 5 days and anesthetized after 14 days with an intraperitoneal injection of ketamine at 100 mg/kg and xylazine at 10 mg/kg. The mice were treated with retro-orbital injection of 100 μl ultrapure water containing 25 mg/ml FITC-dextran. Enucleated eyes were then fixed in 10% formalin for 30 minutes at room temperature. The cornea, iris, lens, and vitreous humor were gently removed under a stereomicroscope (Leica, Wetzlar, Germany). Four radial incisions were made in the dissected retina, which was then flattened with a coverslip. Each in vivo anti-neovascularization experiment was performed with three replicates.
(60) By ELISA and HUVEC tubing assay, it was demonstrated that anti-Flt1-EBPP[A G.sub.4I.sub.1].sub.3n fusion polypeptides retained anti-neovascularization activity as an antagonist against VEGFR1. The present inventors hypothesized that anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n fusion polypeptides might show a therapeutic activity with respect to neovascularization-related eye diseases (in particular, retinal neovascular disease, age-related macular degeneration (AMD)). Intravitreal injection of anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.12 was evaluated for the suppression of laser-induced choroidal neovascularization (CNV), which was an animal model for AMD, in C57BL-6 mice. Daily injection of protein solutions started immediately after laser injury and maintained for 5 days. Injection of a vehicle (PBS) or EBPP[A.sub.1G.sub.4I.sub.1].sub.12 was used as a negative control. CNV lesion volumes were imagined and evaluated with fluorescein isothiocyanate (FITC)-dextran perfused whole choroidal flat-mounts at day 14 after laser injury (
(61) Binding affinity of a targeting ligand against a growth factor receptor (GFR) in cells is important for various diseases associated with cell growth such as neovascularization, because the binding affinity determines whether intracellular signaling will proceed. In the present invention, VEGFR-targeting fusion polypeptides, which are composed of thermally responsive elastin-based polypeptides (EBPs) and vascular endothelial growth factor receptor (VEGFR)-targeting peptides, were genetically manipulated, expressed, and purified and the physicochemical properties thereof were analyzed. The EBPs were introduced as non-chromatographic purification tags and also introduced as a stabilizer, like a poly(ethylene glycol) conjugate, for minimizing rapid in vivo degradation of VEGFR-targeting peptides. In addition, the VEGFR-targeting peptide was introduced to function as a receptor antagonist by specifically binding to VEGFRs.
(62) A fusion polypeptide composed of VEGFR-targeting peptide (anti-Flt1 peptide)-hydrophilic EBP exhibited a soluble unimer form. On the other hand, a fusion polypeptide composed of VEGFR-targeting peptide (anti-Flt1 peptide)-hydrophilic EBP-hydrophobic EBP exhibited a temperature-triggered core-shell micellar structure with a multivalent VGFR-targeting peptide under physiological conditions. As analyzed by enzyme-linked immunosorbent assay (ELISA), this structure greatly increased the binding affinity of the fusion polypeptide for VEGF receptors. Depending on the spatial display of a VEGFR-targeting peptide, the binding affinity of the fusion polypeptides to VEGFRs was greatly regulated.
(63) An anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.3n fusion polypeptide (anti-Flt1 peptide-hydrophilic EBP), which existed as a soluble unimer form below a transition temperature, showed a high anti-neovascularization effect in a CNV model as compared with a EBPP block as a control. In addition, an anti-Flt1-EBP diblock fusion polypeptide (anti-Flt1 peptide-hydrophilic EBP-hydrophobic EBP) formed a temperature-triggered, self-assembled multivalent micellar nanostructure under physiological conditions, resulting in a great difference in the degree of inhibition with respect to specific binding between Flt1-F.sub.c and VEGF depending on the stability of the micellar nanostructure thereof. In the tube formation assay of HUVECs in vitro, anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.12 greatly reduced tube formation, whereas EBPP[A.sub.1G.sub.4I.sub.1].sub.12 had no significant effect on tube formation, which was due to specific interactions between the anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.12 and Flt1 (VEGFR1) on the HUVEC membrane. Finally, in the laser-induced CNV model of mice, anti-Flt1-EBPP[A.sub.1G.sub.4I.sub.1].sub.12 showed a high anti-neovascularization effect. Therefore, this fusion polypeptide and the self-assembled multivalent micellar nanostructure thereof with an anti-Flt1 may be used as a therapeutic polypeptide targeting neovascularization, such as treatment of retinal, corneal, choroidal neovascularization, tumor growth, cancer metastasis, diabetic retinopathy, and asthma.
(64) A fusion polypeptide for inhibiting neovascularization of the present invention can provide a new direction for a drug delivery system for anti-neovascularization, such as treatment of retinal, corneal, choroidal neovascularization, tumor growth, cancer metastasis, diabetic retinopathy, and asthma.