Assay device
10234451 ยท 2019-03-19
Assignee
Inventors
Cpc classification
International classification
C12M3/06
CHEMISTRY; METALLURGY
C12M1/34
CHEMISTRY; METALLURGY
G01N33/543
PHYSICS
C12M1/12
CHEMISTRY; METALLURGY
Abstract
The disclosure relates to a method and device for detecting and quantifying biological molecules such as cell surface or intracellular ligands/receptors in a dynamic system with high sensitivity and specificity; the method of using such platform optionally in combination with an optical detection system and kits comprising the optical platform.
Claims
1. An assay device for the dynamic analysis of cell surface and/or intracellular ligand/receptor expression by live cells, comprising: a cell culture support having one or more cell culture channels, wherein said channel[s] comprise a cell support matrix comprising one or more cell adhesion/cell growth factors over all or part of the cell culture channel[s] to provide a cell culture surface, wherein said cell culture channel[s] each comprise: i) first and second openings positioned at or near the ends of said cell culture channel[s] to provide fluid passage into said cell culture channel[s], wherein said first and second openings are adapted to receive cell growth medium, ii) a third opening, optionally closable, positioned separately from the first or second openings, and in fluid contact with said cell culture channel[s], wherein said third opening is adapted to receive a sample comprising one or more cell types, and iii) a fourth opening, optionally closable, positioned separately from said first, second and third openings and in fluid contact with said cell culture channel[s], wherein said fourth opening is adapted to receive a sample comprising a binding agent that specifically binds a cell surface and/or intracellular ligand/receptor.
2. The device according to claim 1, wherein said cell culture support comprises a plurality of cell culture channels.
3. The device according to claim 1, wherein said cell culture support comprises silicone.
4. The device according to claim 3, wherein the silicone is polydimethylsiloxane.
5. The device according to claim 1, wherein said cell culture support comprises plastic or polystyrene or nylon.
6. The device according to claim 1, wherein said cell support matrix comprises one or more cell adhesion proteins selected from the group consisting of fibronectin, laminins, collagens, and adherens.
7. The device according to claim 1, wherein the one or more cell culture channels comprises the same cell support matrix.
8. The device according to claim 1, wherein the one or more cell culture channels comprises a different cell support matrix.
9. The device according to claim 1, wherein said device comprises one or more cell types.
10. The device according to claim 9, wherein said one or more cell types comprise a mammalian cell.
11. The device according to claim 10, wherein said mammalian cell is a non-human primate cell, mouse cell, rat cell, hamster cell, or rabbit cell.
12. The device according to claim 10, wherein said mammalian cell is a human cell.
13. The device according to claim 10, wherein said mammalian cell is an epidermal keratinocyte, a fibroblast, an epithelial cell, a neuronal glial cell, a neural cell, a hepatocyte, a hepatocyte stellate cell, a mesenchymal cell, a muscle cell, a cardiomyocyte, a myotube cell, a kidney cell, a blood cell, a pancreatic cell, or an endothelial cell.
14. The device according to claim 13, wherein said mammalian cell is a cardiomyocyte.
15. The device according to claim 10, wherein said mammalian cell is a cancer or tumour cell.
16. The device according to claim 9, wherein said one or more cell types comprise a stem cell.
17. The device according to claim 16, wherein said stem cell is an embryonic stem cell/embryonic germ cell which is a pluripotent cell and not a totipotent cell.
18. The device according to claim 16, wherein said stem cell is a cancer stem cell.
19. The device according to claim 1, wherein said device is a microfluidic device.
20. A cell culture apparatus comprising: the assay device according to claim 1 in fluid contact with a source of cell growth medium, wherein the cell growth medium flows through said device to provide cell growth nutrients to cells contained within said assay device.
21. A method to assay expression of one or more ligands/receptors expressed by a cell, comprising: i) adding to the assay device according to claim 1 via at least one of the openings, at least one binding agent that binds one or more ligands/receptors expressed by a cell contained within said cell culture channel, wherein said binding agent is detected, either directly or indirectly, by a detectable label; and ii) detecting the binding of the binding agent to said one or more ligands/receptors as a measure of the presence of said ligand/receptor.
22. The method according to claim 21, wherein said binding agent is a biomolecule.
23. The method according to claim 21, wherein said binding agent is an antibody or antibody binding fragment.
24. The method according to claim 21, wherein said binding agent is a ligand that specifically binds said receptor.
25. The method according to claim 21, wherein said binding agent is a receptor that specifically binds said ligand.
26. The method according to claim 21, wherein said detectable label is a bioluminescent label.
27. The method according to claim 26, wherein said binding agent is a fusion protein comprising a polypeptide binding agent fused in frame to a bioluminescent polypeptide.
28. The method according to claim 26, wherein said bioluminescent polypeptide is a luciferase or a modified luciferase.
29. The method according to claim 21, wherein said device comprises a plurality of cell culture channels comprising one or more cell types arranged in an array and adapted to be read by an array reader.
30. The method according to claim 21, wherein said method is a diagnostic or prognostic method and said cell sample is an isolated biological sample from a subject.
31. The method according to claim 30, wherein said subject is human.
32. A screening method identify agents that modulate the activity of a cell, comprising: i) adding to the device of claim 9 via at least one of the openings, at least one test agent to be screened for biological activity; and ii) measuring the activity of the test agent compared to a device or channel that has not been exposed to said test agent.
33. The method according to claim 32, wherein said assay includes the steps of: i) collating the activity data; ii) converting the collated data into a data analysable form; and optionally iii) providing an output for the analysed data.
34. The method according to claim 32, wherein said agent is a small organic molecule/biomolecule, antibody, ligand, peptide, nucleic acid or peptide aptamer, double stranded RNA, or small inhibitory RNA.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1) The patent or application file contains at least one drawing executed in color. Copies of this patent or patent application publication with color drawing(s) will be provided by the Office upon request and payment of the necessary fee.
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MATERIALS AND METHODS
(11) Microfluidic Device Fabrication
(12) The microdevice was fabricated using polydimethylsiloxane, PDMS (Sylgard 184, Dow Corning, USA) following conventional rapid prototyping and soft lithography techniques. A plastic photomask containing an array of channel profiles having the dimension 65 mm (L)2 mm (W) was printed using a commercial photo plotting direct write laser imager. Standard photolithographic techniques were used to produce a silicon master with positive relief features using a negative photoresist (SU-8 2035, MicroChem Co, USA) to obtain features with 0.08 mm (H).
(13) The silicon master was silanized with Trichloro (1H,1H,2H,2H-perfluorooctyl)silane (Sigma Aldrich, Singapore) in a desiccator for 15 minutes at room temperature prior to the soft lithography steps in order to prevent undesired bonding of PDMS to the master. A mixture of PDMS-prepolymer and curing agent in 10:1 ratio, was poured over the master, degassed and cured for 4 hours at 65 C. The cured PDMS molds were peeled away from the master and cut to the size of standard glass slides (25 mm75 mm). Channel inlets and outlets were punched using 1.5 mm diam. Harris Uni-Core puncher (Ted Pella Inc, USA). An additional hole was punched a few millimeters away from the main inlet using a 0.5 mm diam. Harris Uni-Core puncher, to facilitate the perfusion of the b*-Ab, s-GLuc and CTZ solutions respectively. The PDMS mold was then cleaned and rinsed with Isopropyl alcohol, de-ionized water and blow dried to remove traces of solvents. This was kept aside to bond with fibronectin patterned PDMS-glass coverslips.
(14) Fibronectin Patterning on PDMS-Coverslips
(15) A 25 mm75 mm, glass coverslip (Electron Microscopy Sciences, USA) was coated with PDMS. Briefly, a PDMS mix consisting of 10:1 ratio of base to curing agent was mixed with hexane in a 1:1 ratio. Around 1.5 ml of the PDMS mix: hexane mixture was poured uniformly over the glass coverslip and spin coated at 6000 rpm for 30 seconds. The PDMS coated glass coverslips were baked in 60 C. for 4 hours resulting in 6 m thick PDMS coating on the glass coverslip (
(16) The process of patterning fibronectin onto the PDMS coated glass slides is illustrated in
(17) Cell Culture
(18) A431 and H9c2 cells expressing epidermal growth factor receptors (EGFR's) and -adrenergic receptors respectively were purchased from American Type Culture Collection (Manassas, USA). These cells were examined for their respective surface receptor expression using standard fluorescent ligands/antibodies with an additional actin stain for cardiomyocytes (
(19) Once the cells were 95% confluent for A431 cells and 70% confluent for H9c2 cells, they were trypsinized with 2 0.5% Trypsin-EDTA (Caisson Labs, USA), centrifuged and re-suspended in DMEM complete medium at concentrations of 3 and 1 million cells/mL for A431 and H9c2 respectively. Prior to cell seeding inside the channel, the device was passivated with 1% Pluronics F-127 (Sigma Aldrich, Singapore) for 30 minutes. The channels were then flushed with cell culture media preceding cell seeding. 50 L of cell suspension at the aforementioned concentrations were perfused inside different channels through the cell seeding inlets and outlets with micropipettes placed at both the ends acting as a source and a sink, while the other ports were blocked with stoppers. The micro-device was then incubated at 37 C. inside a 5% CO2 humidified incubator and was left undisturbed for a period of 2 hours to allow the cells to attach to the fibronectin patterns. The unbound cells were flushed away by perfusing media through the main inlet (
(20) Optical Detection
(21) Bioluminescence signal was detected using a deep cooled back illuminated CCD camera, PIXIS_XF 2048F (Princeton Instruments, USA) with a large area sensor 27.627.6 mm2 having a 13.513.5 m pixel size (
(22) Calibration Curve
(23) An enzyme calibration curve was obtained by incubating different dilutions of the s-Gluc on a standard 22 mm22 mm biotinylated glass coverslip (Microsurface inc., USA). This biotinylated coverslip with approximately 1014 biotin/cm2 served as a platform to immobilize different dilutions of s-Gluc. Briefly, a silicone gasket containing rectangular microwells (4 mm1 mm0.5 mm) was placed on top of the biotinylated coverslip to serve as a stencil. Different s-Gluc dilutions 0.07, 0.21, 0.36, 0.43, 0.57, 0.71, 0.86 and 1 of 1 L volume were added on to the micro wells respectively and were incubated for half an hour to attain equilibrium. After incubation, the coverslip was rinsed with DI water following which the silicone stencil was removed and replaced by a PDMS block containing 0.3 mm wide microchannels (
Example 1
(24) We describe a fast and easy method of quantifying cell surface receptors using quantitative bioluminescence and microfluidics. Cells are allowed to grow in a confined area within the microfluidic device by patterning fibronectin on the PDMS coated glass slide (
(25) The number of receptors per cell, R.sub.cell can then be determined by
R.sub.cell=R.sub.TC.sub.sa/(C.sub.n.Math.B*.sub.LR)(1)
where B*.sub.LR is the biotin/pAb labelling ratio.
(26) Bioluminescent signal from a cell standard with a known R.sub.cell is first used to calculate the number of immobilized enzyme molecules in the calibration curve, (see calibration curve results section and
Example 2
(27) Effect of Substrate Concentration
(28) The concentration of the substrate i.e. [CTZ] plays an important role in the light emission kinetics of the bioluminescent reaction. S.sub.T is less when a lesser concentration of the substrate [CTZ] is used. This is because at lower [CTZ] concentrations not all the enzyme molecules react with the substrate to produce light per unit time. However, when one uses a higher substrate concentration, almost all the enzyme molecules react with equal number of substrate molecules per unit time. Hence it is essential to operate at a sufficient amount of substrate concentration in order to carry out a better measurement.
(29) Although there would be continuous perfusion of substrate molecules in a microfluidic flow system (as in this case), the user still has to operate at a sufficiently high substrate concentration so that all the enzyme molecules are actively involved in light production leading to better quantitative results. Thus a sufficiently high concentration 100 M of CTZ was used in all the experiments conducted with cells.
Example 3: Effect of Exposure Time
(30) The exposure time is also an important parameter for quantitative measurements with bioluminescence. Increasing the exposure time would improve the detection of fainter signals by ruling out instrumental delays caused while capturing continuous frames with lesser exposure times. The flash kinetic profile of Gaussia luciferase (Gluc) requires the user to detect signal instantaneously since the peak height as well as S.sup.T is an important factor while quantifying enzyme concentrations.
Example 4: Calibration Curve
(31) The stock concentration of the s-Gluc complex is difficult to determine from protein assays since the streptavidin moiety is also accounted during quantification. Moreover, in order to quantify the cell bound receptors from adherent cells, it is necessary to obtain a calibration curve from immobilized enzymes since this best represents the system under study and avoids any loss in signal caused due to scattering or dispersion which could take place in solution phase free enzyme form. An alternate approach of considering a cell standard, to calculate the actual number of immobilized molecules for the calibration curve is suggested.
(32) The epidermoid carcinoma A431 cell line was found to overexpress EGFR's (R.sub.cell=1.810.sup.6-310.sup.6) on the cell surface by using different methods [1-4]. This was considered to be an appropriate cell standard for our study since it stably over expressed EGFR on the cell surface, as reported in the literature by using quantitative methods such as radiolabelling and positron emission tomography (PET).
(33) Total bioluminescent signal S.sub.T (RLU.Math.m.sup.2s.sup.1) obtained from the A431 cells per unit area and time is determined by performing a flow experiment as mentioned in the methods section. C.sub.n was counted visually by capturing an image using a bright field microscope. The R.sub.cell value from the literature was then used to determine the R.sub.T as mentioned in equation 1.
(34) An area normalized value of the R.sub.cell i.e. molecules/m.sup.2 and its S.sub.T (RLU.Math.m.sup.2s.sup.1) was used to calculate the immobilized receptor density for the 1 enzyme dilution by correlating to its signal (RLU.Math.m.sup.2s.sup.1) obtained from the calibration experiments. The immobilized densities from the other dilutions are interpolated by the same way as mentioned above. The immobilized enzyme densities and their corresponding S.sub.T (RLU.Math.m.sup.2s.sup.1) have been mentioned in table 2.
(35) The surface plot in
Example 4: Receptor Quantification from Cell Islands
(36) A431 Cell Standard:
(37) The signal generated by the microfluidic cell islands are used to determine the total amount of receptor molecules per cell. Prior to the microfluidic cell island experiments, the binding of the b*-EGF and s-Gluc complex to cell surface EGFR's were first validated on a 8-well confocal chamber and imaged with a 601.45NA objective, 70 C. cooled EMCCD camera (Andor Technology) to capture bioluminescence signal from the bound EGF (ligand) molecules. Briefly, the cells were labeled with b*-EGF first followed by the addition of s-Gluc which bound to the b*-EGF molecules. Coelenterazine (CTZ) was then added to the wells and simultaneously imaged with the aforementioned ultrasensitive EMCCD camera.
(38) The cell standard cultured on fibronectin islands is then placed on the lensfree platform to quantify S.sub.T.
Example 4: H9c2 Cell Sample
(39) The back illuminated CCD camera used in our experiments increased the quantum efficiency to >95% allowing one to detect faint signals from the cell islands expressing low receptor numbers. The .sub.1 adrenergic receptor expression on H9c2 cells was found to be a suitable platform to validate our method. Rabbit .sub.1 adrenergic receptor pAb was first biotinylated following standard biotinylation procedure using the ChromaLink Biotinylation kit. UV measurements in NanoDrop instrument revealed that around 6 biotin molecules per antibody were conjugated using this kit. This conjugation or labelling ratio of biotin molecules was taken into account while determining R.sub.cell value. Following the biotinylation procedure the specificity of the .sub.1 pAb was checked by allowing them to bind to H9c2 cells. The .sub.1 adrenergic receptor targeted pAb on these cells were then labelled with streptavidin conjugated Alexa Fluor-488 (s-AF 488). Confocal imaging of these live cells revealed surface binding of the pAb as shown by a slice represented in
(40) R.sub.cell value for the case of H9c2 cells were determined by fitting the total amount of bioluminescent signal produced per unit area and time, S.sub.T for H9c2 cells into the calibration curve equation. The number of .sub.1 adrenergic receptors on the surface of these cells was finally determined by further dividing this value by the biotin labelling ratio, B*.sub.LR (corresponding to one biotin pAb binding to six s-Gluc) as mentioned in table 1. Additional experiments trying to validate the number of s-Gluc complexes on the cell surface were performed in well plates. The cells in the wells were lysed (refer methods section) following which the proteins were subjected to Native PAGE and western blotting. Intensity analysis of the bands obtained from western blot, revealed distinct curves for the .sub.1AR-b*-pAb and the b*-pAb-s-Gluc complexes (
(41) Although this method allows protein separation under non-denaturing conditions, the protein charge and conformation along with the molecular weight, play an important role during protein separation in a Native PAGE. Considering the inherent properties of protein separation in a Native PAGE, the observed molecular weight difference might be apparent and underestimated due to these reasons. In addition, stearic hindrance at the cell surface caused due to receptor localization and clustering might also contribute to inadequate occupancy of the biotin sites per b*-pAb. Hence, the estimated B*.sub.LR from the Native PAGE suggests the lower limit of the s-Gluc bound per antibody.
(42) The R.sub.cell for the case of A431 cells provided in the literature is around 1.810.sup.6 receptors/cell for which a calibration curve with a mono exponential fit were plotted. Considering the two B*.sub.LR values the corresponding .sub.1 adrenergic receptor numbers obtained from the best fit equation for H9c2 cells are 3.1210.sup.5 to <9.3610.sup.5 as mentioned in table 1. Given the inherent variation of B*.sub.LR, the .sub.1 adrenergic receptor numbers determined for the case of H9c2 cells are still found to be in a good agreement with that mentioned in the literature.
(43) TABLE-US-00001 TABLE 1 Values used in the bioluminescent assay for A431 and H9c2 cell line. R.sub.cell calculated using this assay for H9c2 cell line is also mentioned. Ref- Cell er- line C.sub.n B*.sub.LR S.sub.T R.sub.cell R.sub.cell literature ences A431/ 315 1 137.5 1.80 10.sup.6 1.8 10.sup.6 23, EGFR 24 H9c2/ 75 6 7.02 3.12 10.sup.5 .sub.1AR (chroma- link estima- tion) H9c2/ 75 min. 2 7.02 <9.36 10.sup.5 3.00 10.sup.5 25 .sub.1AR (Native PAGE approx- imation)
(44) TABLE-US-00002 TABLE 2 Immobilized enzyme densities calculated from the standard cell intensity by interpolation. Calibration Molecules/m.sup.2 Molecules/m.sup.2 S.sub.T (RLU m.sup.2s.sup.1) when R.sub.cell = when R.sub.cell = Average S.D Dilution 3 10.sup.6 1.8 10.sup.6 5.49E02 1.13E03 0.07 183.39 109.93 2.39E01 9.43E03 0.21 550.17 329.79 8.14E01 3.20E02 0.36 916.95 549.64 1.14E+01 3.52E01 0.43 1100.34 659.57 1.48E+01 1.24E+00 0.57 1467.12 879.43 1.60E+01 1.16E+00 0.71 1833.89 1099.29 3.32E+01 4.24E+00 0.86 2200.67 1319.14 5.88E+01 1.23E+01 1 2567.45 1539.00 Best fit equation y = e.sup.0.0016x y = e.sup.0.0026x
REFERENCES
(45) 1. De Jong L A A, Uges D R A, Franke J P, & Bischoff R (2005) Receptor-ligand binding assays: Technologies and Applications. Journal of Chromatography B 829(1-2):1-25. 2. Ahmed A (2003) Myocardial beta-1 adrenoceptor down-regulation in aging and heart failure: implications for beta-blocker use in older adults with heart failure. European Journal of Heart Failure 5(6):709-715. 3. Guttman M (1992) Dopamine receptors in Parkinson's disease. Neurologic Clinics 10(2):377-386. 4. DeBlasi A, O'Reilly K, & Motulsky H J (1989) Calculating receptor number from binding experiments using same compound as radioligand and competitor. Trends in Pharmacological Sciences 10(6):227-229. 5. Ianoul A, et al. (2005) Imaging nanometer domains of [beta]-adrenergic receptor complexes on the surface of cardiac myocytes. Nat Chem Biol 1(4):196-202. 6. Abulrob A, et al. (Nanoscale imaging of epidermal growth factor receptor clustering. Journal of Biological Chemistry 285(5):3145. 7. Hausmann M, et al. (2006) Near-field scanning optical microscopy in cell biology and cytogenetics. METHODS IN MOLECULAR BIOLOGYCLIFTON THEN TOTOWA 319:275. 8. Edidin M (2001) Near-Field Scanning Optical Microscopy, a Siren Call to Biology. Traffic 2(11):797-803. 9. Maguire C A, et al. (2009) Gaussia Luciferase Variant for High-Throughput Functional Screening Applications. Analytical Chemistry 81(16):7102-7106. 10. Cui K, Xu X, Zhao H, & Wong S T C (2008) A quantitative study of factors affecting in vivo bioluminescence imaging. Luminescence 23(5):292-295. 11. Sadikot R T & Blackwell T S (2005) Bioluminescence Imaging. Proceedings of the American Thoracic Society 2(6):537-540. 12. Hodgson L (2008) New Approaches to In-Cell Detection of Protein Activity: Genetically Encoded Chemiluminescence Probes Pave the Way to Robust HTS Assays. ACS Chemical Biology 3(6):335-337. 13. Zhang Y, Phillips G J, Li Q, & Yeung E S (2008) Imaging localized astrocyte ATP release with firefly luciferase beads attached to the cell surface. Analytical Chemistry 80(23):9316-9325. 14. Cali J J, et al. (2008) Bioluminescent assays for ADMET. 15. Tannous B A, Kim D E, Fernandez J L, Weissleder R, & Breakefield X O (2005) Codon-optimized Gaussia luciferase cDNA for mammalian gene expression in culture and in vivo. Molecular Therapy 11(3):435-443. 16. Chopra A (2008) Gaussia princeps luciferase. 17. Shimomura O & Teranishi K (2000) Light-emitters involved in the luminescence of coelenterazine. Luminescence 15(1):51-58. 18. Inouye S & Sahara Y (2008) Identification of two catalytic domains in a luciferase secreted by the copepod Gaussia princeps. Biochemical and Biophysical Research Communications 365(1):96-101. 19. Inouye S & Shimomura O (1997) The Use of Renilla Luciferase, Oplophorus Luciferase, and Apoaequorin as Bioluminescent Reporter Protein in the Presence of Coelenterazine Analogues as Substrate. Biochemical and Biophysical Research Communications 233(2):349-353. 20. Barry R & Ivanov D (2004) Microfluidics in biotechnology. Journal of nanobiotechnology 2(1):2. 21. Weibel D B & Whitesides G M (2006) Applications of microfluidics in chemical biology. Current Opinion in Chemical Biology 10(6):584-591. 22. Fabricant R N, De Larco J E, & Todaro G J (1977) Nerve growth factor receptors on human melanoma cells in culture. Proceedings of the National Academy of Sciences 74(2):565-569. 23. Felder S, LaVin J, Ullrich A, & Schlessinger J (1992) Kinetics of binding, endocytosis, and recycling of EGF receptor mutants. The Journal of cell biology 117(1):203-212. 24. Velikyan I, et al. (2005) Preparation and Evaluation of 68Ga-DOTA-hEGF for Visualization of EGFR Expression in Malignant Tumors. Journal of Nuclear Medicine 46(11):1881-1888. 25. Ianoul A, et al. (2005) Imaging nanometer domains of .sup.2-adrenergic receptor complexes on the surface of cardiac myocytes. Nature chemical biology 1(4):196-202. 26. Markwardt C B (2009) Non-linear least squares fitting in IDL with MPFIT. arXiv preprint arXiv:0902.2850.