ATTENUATED SALMONELLA GALLINARUM EXPRESSING FLIC OR FLIC-HIL2 AND USES THEREOF
20240240140 ยท 2024-07-18
Assignee
Inventors
Cpc classification
C12N15/74
CHEMISTRY; METALLURGY
Y02A50/30
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
A61P35/00
HUMAN NECESSITIES
International classification
A61P35/00
HUMAN NECESSITIES
Abstract
Disclosed are attenuated Salmonella gallinarum expressing FliC (flagellin) or FliC-hIL2 (human IL2 fused to FliC) and use thereof, wherein the Salmonella strain exhibits excellent immune activation ability and anticancer efficacy and thus can be used as a cancer therapeutic agent, together with or independently from existing anticancer agents.
Claims
1. A polynucleotide, which is introduced to a Salmonella strain to enhance immune activation ability and anti-tumor efficacy of the Salmonella strain, wherein the polynucleotide comprises a polynucleotide encoding FliC, a filament structural protein.
2. The polynucleotide of claim 1, wherein the Salmonella strain is Salmonella gallinarum.
3. The polynucleotide of claim 1, wherein the polynucleotide further comprises a polynucleotide encoding interleukin-2 (IL-2) fused with FliC.
4. The polynucleotide of claim 1, wherein the polynucleotide encoding FliC includes the sequence of SEQ ID NO: 1.
5. The polynucleotide of claim 3, wherein the polynucleotide encoding interleukin-2 fused with FliC includes the sequence of SEQ ID NO: 3.
6. A Salmonella strain, to which a vector containing protein, is introduced.
7. The Salmonella strain of claim 6, wherein the Salmonella strain is Salmonella gallinarum.
8. The Salmonella strain of claim 6, wherein the Salmonella strain is deposited under accession number KACC 15269BP.
9. The Salmonella strain of claim 6, wherein the Salmonella strain is deleted in a gene encoding guanosine tetraphosphate (ppGpp) synthase, a gene inducing functions of the type III secretion system (T3SS), and a Gifsy-2 prophage gene.
10. The Salmonella strain of claim 9, wherein the Salmonella strain is deleted in the glmS gene.
11. The Salmonella strain of claim 6, wherein the Salmonella strain is deleted in relA, spot, ssrAB, Gifsy-2 prophage, and glmS genes.
12. The Salmonella strain of claim 6, wherein the vector further contains a polynucleotide encoding interleukin-2 (IL-2).
13. The Salmonella strain of claim 12, wherein the Salmonella strain is deposited under accession number KACC 15270BP.
14. A pharmaceutical composition for treating, preventing, alleviating, or inhibiting cancer, the pharmaceutical composition comprising, as an active ingredient, a Salmonella strain, to which a vector containing a polynucleotide encoding FliC, a filament structural protein, is introduced.
15. The pharmaceutical composition of claim 14, wherein a vector containing a polynucleotide encoding FliC, a filament structural protein, and a polynucleotide encoding interleukin-2 (IL-2) is introduced to Salmonella strain.
16. The pharmaceutical composition of claim 14, wherein the cancer is at least one selected from the group consisting of breast cancer, lung cancer, stomach cancer, liver cancer, blood cancer, bone cancer, pancreatic cancer, skin cancer, head or neck cancer, skin or eye melanoma, uterine sarcoma, ovarian cancer, rectal cancer, anal cancer, colorectal cancer, fallopian tubal cancer, endometrial cancer, cervical cancer, small intestine cancer, endocrine cancer, thyroid cancer, parathyroid cancer, kidney cancer, soft tissue tumor, urethral cancer, prostate cancer, bronchial cancer, glioblastoma, and bone marrow cancer.
17. A method for treating, preventing, alleviating, or inhibiting cancer, comprising administering to a subject in need there of the pharmaceutical composition according to claim 14.
18. A method for enhancing immune activation ability and anti-tumor efficacy of a Salmonella strain, comprising introducing the polynucleotide according to claim 1 to the Salmonella strain.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0067] The above and other aspects, features, and advantages of the present disclosure will be more apparent from the following detailed description taken in conjunction with the accompanying drawings.
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DETAILED DESCRIPTION OF THE EXEMPLARY EMBODIMENTS
[0085] Hereinafter, the present disclosure will be described in more detail by the following exemplary embodiments. However, these exemplary embodiments are used only for illustration, and the scope of the present disclosure is not limited by these exemplary embodiments.
Example 1: Analysis of Motility and FliC Expression of Salmonella gallinarum
[0086] The mutations in genes associated with flagellin biosynthesis were confirmed through whole genome sequencing of wild-type Salmonella gallinarum, and the results are shown in
[0087] Subsequently, the motility of wild-type Salmonella gallinarum and wild-type Salmonella typhimurium was verified through bacterial motility assay, and the results are shown in
[0088] The mRNA levels of flhD/C (Class I), flgE (Class II), and FliC (Class III), representative genes involved in flagellin biosynthesis, were verified through QPCR, and the results are shown in
Example 2: Identification of Type III Secretion-Dependent Extracellular Secretion Ability of Salmonella gallinarum-Derived FliC
[0089] It is known that FliC from Enteropathogenic Escherichia coli (EPEC) is extracellularly secreted through the Type III secretion system (T3SS) to stimulate TLR5 signal but is not involved in motility. In addition, FliC, known as the filament structural protein of Salmonella typhimurium, is known to be extracellularly secreted.
[0090] It was identified that sgFliC was not produced in wild-type Salmonella gallinarum (see
[0091] As can be shown in
Example 3: Evaluation of Anti-Tumor Efficacy of sgFliC-Secreted Attenuated Salmonella gallinarum
[0092] To evaluate the anti-tumor efficacy of sgFliC, psgFliC having the sequences shown in Table 1 below was transformed into the attenuated Salmonella gallinarum strain SG4048 (?relA, ?spot, ?ssrAB, ?Gifsy-2 prophage, and ?glmS) to produce a sgFliC-secreted attenuated Salmonella gallinarum strain (SG4052). In addition, the SG4052 strain was deposited on 4 Jan. 2023 with the Korean collection for type cultures (KCTC) at Korea Research Institute of Bioscience and Biotechnology and assigned accession number KACC 15269BP. In addition, Mock was transformed into SG4048 to produce a bacterium that could be used as a control for subsequent experiments (SG4051). The sgFliC was strongly detected in the cytoplasm and outside the cells in SG4052 but not in SG4051 (see
TABLE-US-00001 TABLE1 SEQ ID NO Name Sequence(5->3) Note 1 fliC ATGGCACAAGTCATTAATACAAACAGCCTGTCGCT GTTGACCCAGAATAACCTGAACAAATCTCAGTCCT CACTGAGTTCCGCTATTGAGCGTCTGTCCTCTGGT CTGCGTATCAACAGCGCGAAAGACGATGCGGCAGG CCAGGCGATTGCTAACCGCTTCACTTCTAATATCA AAGGTCTGACTCAGGCTTCCCGTAACGCTAACGAC GGCATTTCTATTGCGCAGACCACTGAAGGTGCGCT GAATGAAATCAACAACAACCTGCAGCGTGTGCGTG AGTTGTCTGTTCAGGCCACTAACGGGACTAACTCT GATTCCGATCTGAAATCTATCCAGGATGAAATTCA GCAACGTCTGGAAGAAATCGATCGCGTTTCTAATC AGACTCAATTTAACGGTGTTAAAGTCCTGTCTCAG GACAACCAGATGAAAATCCAGGTTGGTGCTAACGA TGGTGAAACCATTACCATCGATCTGCAAAAAATTG ATGTGAAAAGCCTTGGCCTTGATGGGTTCAATGTT AATGGGCCAAAAGAAGCGACAGTGGGTGATCTGAA ATCCAGCTTCAAGAATGTTACGGGTTACGACACCT ATGCAGCGGGTGCCGATAAATATCGTGTAGATATT AATTCCGGTGCTGTAGTGACTGATGCAGCAGCACC GGATAAAGTATATGTAAATGCAGCAAACGGTCAGT TAACAACTGACGATGCGGAAAATAACACTGCGGTT GATCTCTTTAAGACCACTAAATCTACTGCTGGTAC CGCTGAAGCCAAAGCGATAGCTGGTGCCATTAAAG GTGGTAAGGAAGGAGATACCTTTGATTATAAAGGC GTGACTTTTACTATTGATACAAAAACTGGTGATGA CGGTAATGGTAAGGTTTCTACTACCATCAATGGTG AAAAAGTTACGTTAACTGTCGCTGATATTGCCACT GGCGCGACGGATGTTAATGCTGCTACCTTACAATC AAGCAAAAATGTTTATACATCTGTAGTGAACGGTC AGTTTACTTTTGATGATAAAACCAAAAACGAGAGT GCGAAACTTTCTGATTTGGAAGCAAACAATGCTGT TAAGGGCGAAAGTAAAATTACAGTAAATGGGGCTG AATATACTGCTAACGCCACGGGTGATAAGATCACC TTAGCTGGCAAAACCATGTTTATTGATAAAACAGC TTCTGGCGTAAGTACATTAATCAATGAAGACGCTG CCGCAGCCAAGAAAAGTACCGCTAACCCACTGGCT TCAATTGATTCTGCATTGTCAAAAGTGGACGCAGT TCGTTCTTCTCTGGGGGCAATTCAAAACCGTTTTG ATTCAGCCATTACCAACCTTGGCAATACGGTAACC AATCTGAACTCCGCGCGTAGCCGTATCGAAGATGC TGACTATGCAACGGAAGTTTCTAATATGTCTAAAG CGCAGATTCTGCAGCAGGCTGGTACTTCCGTTCTG GCGCAGGCTAACGACTACAAAGACCATGACGGTGA TTATAAAGATCATGACATCGATTACAAGGATGACG ATGACAAGTAG 2 fliC_AA MAQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSG LRINSAKDDAAGQAIANRFTSNIKGLTQASRNAND GISIAQTTEGALNEINNNLQRVRELSVQATNGTNS DSDLKSIQDEIQQRLEEIDRVSNQTQENGVKVLSQ DNQMKIQVGANDGETITIDLQKIDVKSLGLDGENV NGPKEATVGDLKSSFKNVTGYDTYAAGADKYRVDI NSGAVVTDAAAPDKVYVNAANGQLTTDDAENNTAV DLFKTTKSTAGTAEAKAIAGAIKGGKEGDTEDYKG VTFTIDTKTGDDGNGKVSTTINGEKVTLTVADIAT GATDVNAATLQSSKNVYTSVVNGQFTEDDKTKNES AKLSDLEANNAVKGESKITVNGAEYTANATGDKIT LAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLA SIDSALSKVDAVRSSLGAIQNREDSAITNLGNTVT NLNSARSRIEDADYATEVSNMSKAQILQQAGTSVL AQANDYKDHDGDYKDHDIDYKDDDDK
[0093] For the evaluation of the TLR5 activation ability of sgFliC secreted from SG4052, QUANTI-Blue SEAP assay was performed using HEK293/mTLR5 cell line, which is a cell line selectively and strongly expressing mouse TLR5. After SG4051 and SG4052 were grown over night (O/N), respective bacterial culture media were separated and then concentrated using a Centricon concentrator. Flagellin from the Salmonella typhimurium (FLA-ST) was used as a positive control for testing TLR5 activation ability.
[0094] As can be seen in
[0095] To evaluate the tumor therapeutic ability according to the SG4052 treatment, colon tumor-forming mice were created using CT26, a cell line derived from mouse colon cancer. The CT26 bearing mice were administered SG4052 (1?10.sup.8 cfu/mice, intravenous route) at a single dose, and the tumor size was measured at 2-day intervals. PBS- and SG4051-treated groups were used as control groups in this experiment, and the tumor size was measured at 2-day intervals in the same manner (see
Example 4: Identification of M1 Macrophage Activation Ability of sgFliC-Secreted Attenuated Salmonella gallinarum
[0096] It was evaluated whether or not therapeutic efficacy of SG4052 induced an increase or decrease in the distribution of M1 macrophages. CT26 tumor bearing mice were administered PBS, SG4051, and SG4052, and tumor tissues were excised 8 days after inoculation. From single cells isolated from the tumor, only immune cells were primarily separated through CD45 magnetic beads. Thereafter, the cells were stained with an antibody recognizing a macrophage-specific marker, and then the macrophage distribution was measured through FACs analysis (see
[0097] As a result of the experiment, as shown in
Example 5: Development of sgFliC-hIL2 and Evaluation of Efficacy Thereof
[0098] Human IL-2 (hIL2) with CD8.sup.+ T cell activation ability was conjugated to FliC with extracellular secretion ability to produce attenuated Salmonella gallinarum producing and secreting a novel protein capable of extracellular secretion along with both TLR5 and CD8.sup.+ T cell stimulating origins.
[0099] First of all, it was investigated through a structure prediction program (Alpafold program, version II) whether the conjugation of hIL2 to an end of sgFliC affected each other's structure (see
TABLE-US-00002 TABLE2 SEQ ID NO Name Sequence(5->3) Note 3 fliC_ ATGGCACAAGTCATTAATACAAACAGCCTGTCGCT IL2 GTTGACCCAGAATAACCTGAACAAATCTCAGTCCT CACTGAGTTCCGCTATTGAGCGTCTGTCCTCTGGT CTGCGTATCAACAGCGCGAAAGACGATGCGGCAGG CCAGGCGATTGCTAACCGCTTCACTTCTAATATCA AAGGTCTGACTCAGGCTTCCCGTAACGCTAACGAC GGCATTTCTATTGCGCAGACCACTGAAGGTGCGCT GAATGAAATCAACAACAACCTGCAGCGTGTGCGTG AGTTGTCTGTTCAGGCCACTAACGGGACTAACTCT GATTCCGATCTGAAATCTATCCAGGATGAAATTCA GCAACGTCTGGAAGAAATCGATCGCGTTTCTAATC AGACTCAATTTAACGGTGTTAAAGTCCTGTCTCAG GACAACCAGATGAAAATCCAGGTTGGTGCTAACGA TGGTGAAACCATTACCATCGATCTGCAAAAAATTG ATGTGAAAAGCCTTGGCCTTGATGGGTTCAATGTT AATGGGCCAAAAGAAGCGACAGTGGGTGATCTGAA ATCCAGCTTCAAGAATGTTACGGGTTACGACACCT ATGCAGCGGGTGCCGATAAATATCGTGTAGATATT AATTCCGGTGCTGTAGTGACTGATGCAGCAGCACC GGATAAAGTATATGTAAATGCAGCAAACGGTCAGT TAACAACTGACGATGCGGAAAATAACACTGCGGTT GATCTCTTTAAGACCACTAAATCTACTGCTGGTAC CGCTGAAGCCAAAGCGATAGCTGGTGCCATTAAAG GTGGTAAGGAAGGAGATACCTTTGATTATAAAGGC GTGACTTTTACTATTGATACAAAAACTGGTGATGA CGGTAATGGTAAGGTTTCTACTACCATCAATGGTG AAAAAGTTACGTTAACTGTCGCTGATATTGCCACT GGCGCGACGGATGTTAATGCTGCTACCTTACAATC AAGCAAAAATGTTTATACATCTGTAGTGAACGGTC AGTTTACTTTTGATGATAAAACCAAAAACGAGAGT GCGAAACTTTCTGATTTGGAAGCAAACAATGCTGT TAAGGGCGAAAGTAAAATTACAGTAAATGGGGCTG AATATACTGCTAACGCCACGGGTGATAAGATCACC TTAGCTGGCAAAACCATGTTTATTGATAAAACAGC TTCTGGCGTAAGTACATTAATCAATGAAGACGCTG CCGCAGCCAAGAAAAGTACCGCTAACCCACTGGCT TCAATTGATTCTGCATTGTCAAAAGTGGACGCAGT TCGTTCTTCTCTGGGGGCAATTCAAAACCGTTTTG ATTCAGCCATTACCAACCTTGGCAATACGGTAACC AATCTGAACTCCGCGCGTAGCCGTATCGAAGATGC TGACTATGCAACGGAAGTTTCTAATATGTCTAAAG CGCAGATTCTGCAGCAGGCTGGTACTTCCGTTCTG GCGCAGGCTAACGGTGGCGGTGGTGCTAGCGCACC TACTTCAAGTTCTACAAAGAAAACACAGCTACAAC TGGAGCATTTACTGCTGGATTTACAGATGATTTTG AATGGAATTAATAATTACAAGAATCCCAAACTCAC CAGGATGCTCACATTTAAGTTTTACATGCCCAAGA AGGCCACAGAACTGAAACATCTTCAGTGTCTAGAA GAAGAACTCAAACCTCTGGAGGAAGTGCTAAATTT AGCTCAAAGCAAAAACTTTCACTTAAGACCCAGGG ACTTAATCAGCAATATCAACGTAATAGTTCTGGAA CTAAAGGGATCTGAAACAACATTCATGTGTGAATA TGCTGATGAGACAGCAACCATTGTAGAATTTCTGA ACAGATGGATTACCTTTAGCCAAAGCATCATCTCA ACACTGACTGACTACAAAGACCATGACGGTGATTA TAAAGATCATGACATCGATTACAAGGATGACGATG ACAAGTAG 4 fliC_ MAQVINTNSLSLLTQNNLNKSQSSLSSAIERLSSG IL2_ LRINSAKDDAAGQAIANRFTSNIKGLTQASRNAND AA GISIAQTTEGALNEINNNLQRVRELSVQATNGTNS DSDLKSIQDEIQQRLEEIDRVSNQTQENGVKVLSQ DNOMKIQVGANDGETITIDLQKIDVKSLGLDGENV NGPKEATVGDLKSSFKNVTGYDTYAAGADKYRVDI NSGAVVTDAAAPDKVYVNAANGQLTTDDAENNTAV DLFKTTKSTAGTAEAKAIAGAIKGGKEGDTEDYKG VTFTIDTKTGDDGNGKVSTTINGEKVTLTVADIAT GATDVNAATLOSSKNVYTSVVNGQFTEDDKTKNES AKLSDLEANNAVKGESKITVNGAEYTANATGDKIT LAGKTMFIDKTASGVSTLINEDAAAAKKSTANPLA SIDSALSKVDAVRSSLGAIQNREDSAITNLGNTVT NLNSARSRIEDADYATEVSNMSKAQILQQAGTSVL AQANGGGGASAPTSSSTKKTQLQLEHLLLDLQMIL NGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLE EELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLE LKGSETTFMCEYADETATIVEFLNRWITFSQSIIS TLTDYKDHDGDYKDHDIDYKDDDDK
[0100] The expression and secretion abilities of sgFliC-hIL2 were validated by western blotting. SG4051 was used as a negative control for this experiment and SG4052 was used as a positive control for this experiment (see
[0101] Next, respective independent functions of the sgFliC-hIL2 fusion protein were evaluated. For the test of hIL2 function, a lymphocyte cell line (HT-2) isolated from the mouse spleen was introduced. Since HT-2 is a cell line that exhibits IL-2-dependent growth, IL-2 or IL-2-containing media (ConA, Corning) needs to be used for HT-2 cell growth. The HT-2 cell line was treated with cultured media of SG4052 (SG4048 carrying psgFliC) and SG4053 (SG4048 carrying psgFliC-hIL2) at 1 ?g/ml each and, after 24 hours, cell viability assay (MTT) was performed. In this experiment, the PBS-treated group was used as a negative control group and the Con A-treated group was used as a positive control group. As for cell viability, the growth of the positive control group was set as 100%, and a comparison on growth was made among the other experimental groups. Resultantly, the treatment with SG4053 cultured media (1 ?g/ml) was observed to show a similar growth to the positive control group, and the growth was not observed in the negative control group and the SG4052 cultured media-treated group (see
[0102] Next, the TLR5 activation function of sgFliC-hIL2 was investigated. In this experiment, HEK293/mTLR5 cell line, which is a cell line selectively strongly expressing mouse TLR5, was utilized while SG4051 cultured media (1 ?g/ml) were used as a negative control and FLA-ST (1 ng/ml) was used as a positive control. The HEK293/mTLR5 cell line was treated with cultured media (1 ?g/ml) of SG4052 and SG4053 each and, after 24 hours, QUANTI-Blue SEAP assay was performed. Consequently, the SG4053 cultured media-treated group was observed to show similar or high activity compared with the positive control group (see
Example 6: Evaluation of Anti-Tumor Efficacy of sgFliC-IL2-Secreted Attenuated Salmonella gallinarum
[0103] To evaluate the tumor therapeutic ability according to the SG4053 treatment, CT26 bearing mice was produced. In this experiment, a PBS-treated group was used as a negative control group, and a SG4051- or SG4052-treated group was used as a positive control group. Like in the example above, the tumor size was measured at 2-day intervals for 18 days (see
[0104] As a result of the experiment, the tumor size decreased by a mean of 38% in the SG4051-treated group compared with the PBS-treated group, a mean of 69% in the SG4052-treated group compared with the PBS-treated group, and a mean of 84% in the SG4053-treated group compared with the PBS-treated group. As for the survival rate in each group, the survival extended by up to 10 days in the SG4051-treated group compared with the PBS-treated group, up to 35 days in the SG4052-treated group compared with the PBS-treated group, and up to 42 days in the SG4053-treated group compared with the PBS-treated group. Particularly, the tumor completely disappeared in one animal in the SG4052-treated group and three animals in the SG4053-treated group. These results indicate that sgFliC-hIL2 secreted from attenuated Salmonella gallinarum showed maximized therapeutic ability compared with existing attenuated Salmonella gallinarum or sgFliC-secreted attenuated Salmonella gallinarum.
Example 7: Evaluation of Immune Cell Activation Ability of sgFliC-IL2-Secreted Attenuated Salmonella gallinarum
[0105] As identified in Example 6, sgFliC-IL2 secreted from SG4053 had an enhanced therapeutic efficacy in CT26 bearing mice. Hence, it was investigated whether the mechanism of enhanced therapeutic ability of SG4053 was attributed to the activation of immune cells in tumors.
[0106] To observe a change in the immune cell distribution, CT26 bearing mice were administered PBS (100 ?l/mice), SG4051 (1?10.sup.8 cfu/mice), SG4052 (1?10.sup.8 cfu/mice), and SG4053 (1?10.sup.8 cfu/mice), and 8 days after administration, single cells were isolated from tumor tissues. CD45.sup.+ lymphocytes recovered through CD45 magnetic beads were stained with a specific antibody recognizing an immune cell-specific marker. Thereafter, the distribution of each type of immune cells was analyzed through FACs assay. The distribution results of the macrophage M1 (F4/80.sup.+, MHC II.sup.+, CD206.sup.?) or M2 (F4/80.sup.+, MHC II.sup.+, CD206.sup.+) in tumors are shown in
[0107] Next, it was investigated whether the mechanism of enhanced therapeutic efficacy was attributed to a change in T cell distribution. The distributions of CD4.sup.+ T cells (CD3.sup.+, CD4.sup.+), CD8.sup.+ T cells (CD3.sup.+, CD8.sup.+) and effector CD8.sup.+ T cells (CD3.sup.+, CD8.sup.+, CD4.sup.High, CD62L.sup.Low) and the CD8.sup.+/CD4.sup.+ ratio in tumors were analyzed, and the results are shown in