Uses of partial peptides of survivin and variations thereof

Abstract

The object aims to provide: a novel tumor antigen; a novel therapeutic agent useful in a method for treating a malignant neoplasm by utilizing the tumor antigen; and a tumor antigen which can be used as the therapeutic agent. Thus, disclosed are: a novel tumor antigen which has an epitope capable of inducing a Th1 cell which is a CD4-positive T cell specific to Survivin; and use of the tumor antigen. Specifically disclosed is a polypeptide which comprises an amino acid sequence depicted in SEQ ID NO:17 or the like and has an activity to cause the production of a cytokine by a Th cell that is a cell specific to Survivin. The peptide can induce a Th cell that is specific to Survivin and can cause the production of a cytokine by the Sur/Th cell when the peptide is incubated together with an antigen-presenting cell and a CD4-positive T cell.

Claims

1. A method for inducing production of interferon ? (INF-?) in a patient in need thereof, comprising administering to the patient a polypeptide in an effective amount, wherein the patient has a HLA genotype of HLA-DBR1*0101 or HLA-DQB1*0601, and wherein the polypeptide consists of the amino acid sequence of SEQ ID NO: 17 or a variation thereof, a) wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that one to five amino acids at the C terminus of the amino acid sequence of SEQ ID NO: 17 are deleted; b) wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that one to seven amino acids at the N terminus of the amino acid sequence of SEQ ID NO: 17 are deleted; c) wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that any one of amino acid residues at positions of 1-3, 6, 8 and 12-18 of the amino acid sequence of SEQ ID NO: 17 is substituted with alanine; or d) wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that an amino acid residue at position 10 or 11 of the amino acid sequence of SEQ ID NO: 17 is substituted with glycine.

2. The method of claim 1, wherein the polypeptide consists of the amino acid sequence of SEQ ID NO: 17.

3. The method of claim 1, wherein the polypeptide consists of a variation of the amino acid sequence of SEQ ID NO: 17, wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that one to five amino acids at the C terminus of the amino acid sequence of SEQ ID NO: 17 are deleted.

4. The method of claim 1, wherein the polypeptide consists of a variation of the amino acid sequence of SEQ ID NO: 17, wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that one to seven amino acids at the N terminus of the amino acid sequence of SEQ ID NO: 17 are deleted.

5. The method of claim 1, wherein the polypeptide consists of a variation of the amino acid sequence of SEQ ID NO: 17, wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that any one of amino acid residues at positions of 1-3, 6, 8 and 12-18 of the amino acid sequence of SEQ ID NO: 17 is substituted with alanine.

6. The method of claim 1, wherein the polypeptide consists of a variation of the amino acid sequence of SEQ ID NO: 17, wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that one or an amino acid residue at position 10 or 11 of the amino acid sequence of SEQ ID NO: 17 is substituted with glycine.

7. A method for inducing a Th cell specific to Survivin, comprising incubating in vitro a polypeptide, an antigen-presenting cell and a CD4-positive T cell, wherein the polypeptide consists of the amino acid sequence of SEQ ID NO: 17 or a variation thereof, a) wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that one to five amino acids at the C terminus of the amino acid sequence of SEQ ID NO: 17 are deleted; b) wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that one to seven amino acids at the N terminus of the amino acid sequence of SEQ ID NO: 17 is deleted; c) wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that any one or more of amino acid residues at positions of 1-3, 6, 8 and 12-18 of the amino acid sequence of SEQ ID NO: 17 is substituted with alanine; or d) wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that an amino acid residue at position 10 or 11 of the amino acid sequence of SEQ ID NO: 17 is substituted with glycine.

8. The method of claim 7, wherein the polypeptide consists of the amino acid sequence of SEQ ID NO: 17.

9. The method of claim 7, wherein the polypeptide consists of a variation of the amino acid sequence of SEQ ID NO: 17, wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except one to five amino acids at the C terminus of the amino acid sequence of SEQ ID NO: 17 are deleted.

10. The method of claim 7, wherein the polypeptide consists of a variation of the amino acid sequence of SEQ ID NO: 17, wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that one to seven amino acids at the N terminus of the amino acid sequence of SEQ ID NO: 17 are deleted.

11. The method of claim 7, wherein the polypeptide consists of a variation of the amino acid sequence of SEQ ID NO: 17, wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that any one of amino acid residues at positions of 1-3, 6, 8 and 12-18 of the amino acid sequence of SEQ ID NO: 17 is substituted with alanine.

12. The method of claim 7, wherein the polypeptide consists of a variation of the amino acid sequence of SEQ ID NO: 17, wherein the variation consists of the amino acid sequence identical to the amino acid sequence of SEQ ID NO: 17 except that an amino acid residue at position 10 or 11 of the amino acid sequence of SEQ ID NO: 17 are substituted with glycine.

Description

BRIEF DESCRIPTION OF THE DRAWINGS

(1) FIG. 1 shows the results of the intracellular staining showing the measurements of the production of INF-? by Sur/Th cells where each of the mixed peptides MIX1 to MIX5 was added to the group of cells comprising the Sur/Th cells induced from a human whose HLA genotype is HLA-DRB1*0101/HLA-DRB1*0901. In the figure, the ordinate indicates the CD4 expression level and the abscissa the INF-? expression level;

(2) FIG. 2 shows the results of the intracellular staining showing the measurements of the production of INF-? by Sur/Th cells where each of the polypeptides SU16 to SU22 was added to the group of cells comprising the Sur/Th cells induced from a human whose HLA genotype is HLA-DRB1*0101/HLA-DRB1*0901. In the figure, the ordinate indicates the CD4 expression level and the abscissa the INF-? expression level;

(3) FIG. 3 shows the results of the measurements by ELISA of the production of INF-? by Sur/Th cells where each of the anti-HLA-DP antibodies, anti-HLA-DQ antibodies, and anti-HLA-DR antibodies was added to the group of cells comprising the Sur/Th cells induced from a human whose HLA genotype is HLA-DRB1*0101/HLA-DRB1*0901. In the figure, the ordinate indicates the production amount of IFN-? (IFN-g);

(4) FIG. 4 shows the results of the measurements by ELISA of the production of INF-? by Sur/Th cells where SU18 (cognate) was added to the group of cells comprising the Sur/Th cells induced from a human whose HLA genotype is HLA-DRB1*0101/HLA-DRB1*0901 and control peptides (irrelevant) were added to allogeneic PBMCs, each HLA genotype of which is HLA-DRB1*1201/HLA-DRB1*1405, HLA-DRB1+0410/HLA-DRB1*1201, HLA-DRB1*0405/HLA-DRB1*0901, HLA-DRB1*0401/HLA-DRB1*0901, HLA-DRB1*0101/HLA-DRB1*0802, and HLA-DRB1*0101/HLA-DRB1*0101. In the figure, the ordinate indicates the each HLA genotype of PBMCs used as antigen-presenting cells and the abscissa indicates the production amount of IFN-? (IFN-g);

(5) FIG. 5 shows the results of the measurements by ELISA of the production of INF-? by Sur/Th cells where each of the polypeptides T1 to T11 was added to the Sur/Th cell induced from a human whose HLA genotype is HLA-DRB1*0101. In the figure, the ordinate indicates amino acid sequence of polypeptide added and the abscissa indicates the production amount of IFN-? (IFN-g);

(6) FIG. 6 shows the results of the measurements by the ELISPOT assay for the INF-? (IFN-g)-producing cell numbers in Sur/Th cells where each of the polypeptides T1 to T10 was added to the Sur/Th cells induced from a human whose HLA genotype is HLA-DRB1*1201/HLA-DRB1*1502;

(7) FIG. 7 shows the results of the measurements by ELISA of the production of INF-? by Sur/Th cells where each of the anti-HLA-DP monoclonal antibody (mAb), anti-HLA-DQ mAb, and anti-HLA-DR mAb was added to the Sur/Th cells induced from a human whose HLA genotype is HLA-DQB1*0302/HLA-DQB1*0601. In the figure, the ordinate indicates the production amount of IFN-? (IFN-g);

(8) FIG. 8 shows the results of the measurements by ELISA of the production of INF-? by Sur/Th cells where SU18 (cognate) or control (irrelevant) peptides were added to the cells comprising the Sur/Th cells induced from a human whose HLA genotype is HLA-DQB1*0302/HLA-DQB1*0601 with allogeneic PBMCs, each HLA genotype of which is HLA-DQB1*0301/HLA-DQB1*0302, HLA-DQB1*0401/HLA-DQB1*0602, HLA-DQB1*0302/HLA-DQB1*0401, and HLA-DQB1*0301/HLA-DQB1*0601. In the figure, the ordinate indicates amino acid sequence of polypeptide added and the abscissa indicates the production amount of IFN-? (IFN-g);

(9) FIG. 9 shows the results of the measurements by ELISA of the production of INF-? by Sur/Th cells where each of the polypeptides T1 to T10 was added to the Sur/Th cells induced from a human whose HLA genotype is HLA-DQB1*0601. In the figure, the ordinate indicates amino acid sequence of polypeptide added and the abscissa indicates the production amount of IFN-? (IFN-g); and

(10) FIG. 10 shows the results of the measurements by ELISA of the production of INF-? by Sur/Th cells where each of the polypeptides S1 to S17 was added to the Sur/Th cells induced from a human whose HLA genotype is HLA-DQB1*0601. In the figure, the ordinate indicates amino acid sequence of polypeptide added and the abscissa indicates the production amount of IFN-? (IFN-g).

DETAILED DESCRIPTION OF THE INVENTION

(11) The present invention relates to a partial polypeptide of Survivin, a tumor antigen comprising the partial polypeptide, and a therapeutic agent for malignant neoplasms comprising the tumor antigen and Th cells specific to the tumor antigen. This invented therapeutic agent for malignant neoplasms is the therapeutic agent preferably comprising tumor antigen comprising partial polypeptide of Survivin and cognate tumor antigen-specific Th cells induced from CD4-positive T cells of patient to be treated.

(12) Because this invented therapeutic agent for malignant neoplasms comprises tumor antigens, a partial polypeptide of Survivin, in combination with Th cells specific to the tumor antigens, the agent exerts a significant effect in regression of malignant neoplasms compared to the case where the tumor antigens or the Th cells specific to the tumor antigens are separately administered to a patient.

(13) Th cells specific to the tumor antigens comprising a partial polypeptide of Survivin may be any of Th0 cells, Th1 cells, or Th2 cells as long as they are Th cells that produce cytokines by specific stimulation by the tumor antigens, and more preferably Th1 cell. Th cells specific to such tumor antigens can be induced and prepared from the CD4-positive T cells by incubating the tumor antigens, antigen-presenting cells expressing HLA class II molecules, and the CD4-positive T cells under appropriate conditions.

(14) CD4-positive T cells that can be used in the method of the present invention can be isolated from the collected blood by common methods, for example, a method using MACS (Miltenyi Biotech) or the like. In the present invention, CD4-positive T cells collected from a patient with malignant neoplasms to be treated are preferably used.

(15) Antigen-presenting cells that can be used in the method of the present invention may be any cell expressing HLA class II molecules on their surface, examples of which include B cell, macrophage, monocyte and non-proliferative transfectant as well as dendritic cell, but are not limited thereto.

(16) As for incubation, tumor antigens comprising a partial polypeptide of Survivin, antigen-presenting cells, and CD4-positive T cells may be simultaneously incubated, or after the tumor antigens and the antigen-presenting cells are incubated, they may be incubated together with the CD4-positive T cells. The incubation may be carried out under the conditions in accordance with a common method by which, in the presence of IL-2, the desired antigen is presented by the antigen-presenting cells via HLA Class II molecules and mature Th cells specific to the antigen are induced from CD4-positive T cells, e.g., the method described in Tim et al., (Immunology Today, 1996, Vol. 17, No. 3, pp. 138-146). On the basis of the descriptions by Nishimura et al., (J. Exp. Med., 1999, Vol. 190, No. 5, pp. 617-627), any of Th0 cells, Th1 cells, or Th2 cells can be specifically induced from CD4-positive T cells by changing incubation conditions variously.

(17) The induction of Th0 cells, Th1 cells, or Th2 cells can be confirmed by observing cytokines in each cell produced when the cell was restimulated with a tumor antigen, a partial polypeptide of Survivin (e.g., Tim et al., mentioned above). Cytokine production can be confirmed, using ELISA, intracellular staining, ELISPOT, and other various methods.

(18) One aspect of the polypeptide of the present invention is an antigen polypeptide corresponding to an amino acid sequence of NO. 76 to 94 of a tumor antigen protein (the above Non-Patent Document 2) (SEQ ID NO:17, hereinafter referred to as SU18), referred to as Survivin.

(19) In addition, polypeptides comprising the amino acid sequences having such relations as b) to g) below with the amino acid sequences of the polypeptide, SU18 (SEQ ID NO:17), also can be used as the tumor antigen of the present invention.

(20) b) An amino acid sequence in which one to several tens of any amino acids are added to the N terminus and/or C terminus of the amino acid sequence represented by SEQ ID No:17;

(21) c) An amino acid sequence in which one to four amino acids at the N terminus of the amino acid sequence represented by SEQ ID No:17 are deleted;

(22) d) An amino acid sequence in which one to five amino acids at the C terminus of the amino acid sequence represented by SEQ ID No:17 are deleted;

(23) e) An amino acid sequence in which one to several amino acid residues of the amino acid sequence represented by SEQ ID No:17 are substituted and/or deleted;

(24) f) An amino acid sequence in which one to several tens of any amino acids are added to the N terminus and/or C terminus of the amino acid sequence in which one to several amino acid residues of the amino acid sequence represented by SEQ ID No:17 are substituted and/or deleted; and
g) An amino acid sequence in which one to five amino acids at the N terminus and/or C terminus of the amino acid sequence represented by SEQ ID No:17 are deleted, wherein one to several amino acid residues are further substituted.

(25) The amino acid sequences of b) to g) described above are defined as an amino acid sequence constituting a polypeptide that retains epitopes existing in SU18 and has an activity to produce cytokines in Sur/Th cells, or that has epitopes that induces Th cells specific to Survivin or SU18 from CD4-positive T cells.

(26) Although amino acid residues that are substituted, deleted, or added, as defined in b) to g), are not particularly limited within a range where the activities or functions of the polypeptide described above are maintained, addition of one to several tens of amino acids in b) and f) means addition of 1 to 50 amino acids, preferably 1 to 30 amino acids, and more preferably 1 to 15 amino acids.

(27) Preferred examples of the substitution, deletion, or addition of the amino acid as described above are silent substitution, deletion, and addition; especially preferred is conservative amino acid substitution. These examples do not change an activity to produce cytokines in the Sur/Th cells of the polypeptide in the present invention or epitopes that induce Th cells specific to Survivin or SU18 from CD4-positive T cells. Typical examples of the conservative substitution include mutual substitution of hydrophobic amino acids, Ala, Val, Leu, and Ile; mutual substitution of hydroxyl amino acids, Ser and Thr; mutual substitution of acidic residues, Asp and Glu; mutual substitution of amide type amino acids, Asn and Gln; mutual substitution of basic amino acids, Lys and Arg; and mutual substitution of aromatic amino acids, Phe and Tyr.

(28) SU18 has an activity to produce cytokines in Sur/Th cells induced from CD4-positive T cells by incubating Survivin, antigen-presenting cells, and CD4-positive T cells, meaning that SU18 has epitopes that can be recognized by the Sur/Th cells and the epitopes are presented by MHC class II molecules expressing on the surface of antigen-presenting cells in which Survivin is taken up. Therefore, a therapeutic agent for malignant neoplasms comprising Survivin, SU18, and Sur/Th cells is one aspect of the present invention. A therapeutic agent for malignant neoplasms, comprising Th cells specific to SU18 induced from CD4-positive T cells by incubating Survivin and/or SU18, antigen-presenting cells, and the CD4-positive T cells, is also one aspect of the present invention.

(29) SU18 is believed to be a polypeptide that can be a tumor antigen not only in human having HLA genotype of HLA-DRB1*0101 but also in human whose HLA genotype is HLA-DRB1*1201/HLA-DRB1*1502 or HLA-DQB1*0601.

(30) Every polypeptide described above is a novel polypeptide that can be used as an ingredient of a therapeutic agent for malignant neoplasms, having an activity to induce Th cells specific to the polypeptide from CD4-positive T cells and/or an activity to produce cytokines in such Th cells or Sur/Th cells. The activity to produce cytokines in Th cells specific to the polypeptide or Survivin in each polypeptide described above can be confirmed by stimulating the Th cells with the polypeptide and measuring the produced cytokines by various known methods. For example, the production of interferon ? (INF-?) can be readily measured and confirmed by using commercially available ELISA kits from BD Biosciences or the like.

(31) To each polypeptide described above which is one aspect of the present invention, as long as the amino acid sequence constituting the polypeptide is contained, for example, His-Tag widely used as a tag sequence useful in separation and purification of proteins, an appropriate linker sequence, and an amino acid sequence of a marker protein such as GFP can be further added. Alternatively, labeled compounds such as biotin can also be added to each polypeptide. Therefore, even a polypeptide comprising an amino acid sequence in which any amino acid residue used for the purpose of other than producing cytokines in Th cells and Sur/Th cells specific to the polypeptide and inducing the cells from CD4-positive T cells is added to the amino acid sequence constituting the polypeptide which is one aspect of the present invention, and a polypeptide in which an appropriate labeled compound is added to the polypeptide of the present invention are still within the scope of the present invention as long as they have an activity to produce cytokines in the cells or they have an epitope that induces specific Th cells from CD4-positive T cells.

(32) The polypeptide of the present invention can be produced as a recombinant protein by applying various known gene recombination techniques to DNA encoding the polypeptide. Typically, the polypeptide may be produced by synthesizing the DNA encoding the polypeptide of the present invention by using an appropriate DNA synthesizer, constructing an expression vector that expresses the polypeptide of the present invention by appropriately selecting or combining various techniques described in reference books in the art such as Sambrook et al., Molecular Cloning: A Laboratory Manual, 2nd edition (Cold Spring Harbor Laboratory Press, 1989), and transforming an appropriate host cell such as E. coli by the expression vector. In the production, as mentioned above, various operations, such as addition of His-tag, used in the production of a recombinant polypeptide can be applied.

(33) The polypeptide of the present invention can also be chemosynthetically produced using an amino acid modified by various protecting groups as a raw material. Methods for organochemically synthesizing a polypeptide without using a gene or a host cell are well known to those skilled in the art. For example, Jikken Kagaku Koza (Courses in Experimental Chemistry) 16, 5th edition, Yukikagobutsu-no-Gosei (Synthesis of Organic Compounds) IV (Saburo Aimoto et al., The Chemical Society of Japan) or the like describes various methods for chemical synthesis of a polypeptide, by any of which methods the polypeptide of the present invention can be synthesized. The polypeptide can also be synthesized by using a commercially available apparatus commonly referred to as a peptide synthesizer.

(34) By incubation with antigen-presenting cells and CD4-positive T cells under appropriate conditions, the polypeptide described above can induce the CD4-positive T cells to Th cells. Thus, the present invention also provides a method for inducing Th cells specific to the above-described polypeptide and/or Survivin by incubating in vitro antigen-presenting cells expressing HLA class II molecules, CD4-positive T cells, and the above-described polypeptide. In incubation, in addition to IL-2, one or more of IFN-?, IL-12, and anti-IL-4 antibodies are preferably added, under which conditions, Th1 cells can be induced which produces IFN-? and produces IL-4 little.

(35) Any antigen-presenting cell, as mentioned above, can be used in this method as long as the cell expresses HLA class II molecules on its surface, examples of which include B cell, macrophage, monocyte and non-proliferative transfectant as well as dendritic cell, but are not limited thereto. As for incubation, the above-described polypeptide, antigen-presenting cells, and CD4-positive T cells may be simultaneously incubated, or after the polypeptide of the present invention and the antigen-presenting cells are incubated, they may be incubated together with the CD4-positive T cells. The conditions of the incubation of the peptide of the present invention, the antigen-presenting cells expressing HLA class II molecules on their surface, and the CD4-positive T cells, as mentioned above, can be determined according to the incubation conditions in a common method by which the desired antigen is presented by the antigen-presenting cells via the HLA class II molecules and mature Th cells specific to the antigen is induced from CD4-positive T cells, e.g., the above method described in Tim et al.

(36) According to the method of the present invention, Sur/Th cells can be induced and cultured in vitro by collecting antigen-presenting cells and CD4-positive T cells from a patient and incubating these cells and the polypeptide of the present invention. It is expected that return of the Sur/Th cells induced by this method into the patient can activate the immune system of the patient him/herself and cause regression of tumor cells.

(37) The polypeptide of the present invention, by administering it to an appropriate animal such as a rabbit, can induce in the animal antibodies that can specifically recognize Survivin. Such antibodies can specifically detect presence of cells expressed by Survivin, i.e., presence of cancer cells, and therefore can be utilized in efficient diagnosis of malignant neoplasms.

(38) The therapeutic agent for malignant neoplasms of the present invention may contain tumor antigens and Th cells specific to the tumor-specific antigen; it may also contain, to the extent that their actions are not inhibited, various excipients commonly used for formulation of drugs, other pharmaceutically active ingredients or the like. In particular, the therapeutic agent for malignant neoplasms of the present invention is preferably in the form of a buffer solution or a liquid medium that can stably retain the tumor antigens and the Th cells specific to the tumor-specific antigens.

(39) Non-limiting examples of the buffer solution include a neutral buffered saline or a phosphate-buffered saline. The buffer solution may further contain saccharides such as glucose, mannose, sucrose, dextran, and mannitol, proteins, amino acids, antioxidants, bacteriostatic agents, chelating agents (e.g., EDTA or glutathione), adjuvants (e.g. aluminum hydroxide), osmoregulatory agents, suspensions, thickening agents, and/or preservatives.

(40) Although the therapeutic agent for malignant neoplasms of the present invention is preferably in the form of a mixture of tumor antigens and Th cells specific to the tumor-specific antigens, the agent may also be in the form of so-called a kit in which the tumor antigens and the Th cells specific to the tumor-specific antigens, which can be administered in admixture when used, are stored separately.

(41) The present invention will now be described in more detail by way of examples. However, the present invention is not limited to these examples.

EXAMPLES

Identification of SU18

(42) 1) Synthesis of Peptide

(43) From the N terminus to C terminus of Survivin, a total of 25 types (referred to as SU1 to SU27) of 19 to 20-amino acid residue peptide (Table 1) having an overlapping sequence of 7 to 8 amino acids at the C terminus and/or N terminus were designed, for example, a peptide composed of 1st to 20th amino acid sequence of Survivin-2B (SEQ ID NO:56), a peptide composed of 8th to 27th amino acid sequence thereof, and a peptide composed of 14th to 34th amino acid sequence thereof, each of which was chemically synthesized.

(44) TABLE-US-00001 TABLE1 MIX1 SU1 MGAPTLPPAWQPFLKDHRIS SequenceNo.1 SU2 PAWQPFLKDHRISTFKNWPF SequenceNo.2 SU3 LKDHRISTFKNWPFLEGCA SequenceNo.3 SU4 FKNWPFLEGCACTPERMAEA SequenceNo.4 SU5 EGCACTPERMAEAGFIHCP SequenceNo.5 MIX2 SU6 PERMAEAGFIHCPTENEPDL SequenceNo.6 SU7 GFIHCPTENEPDLAQCF SequenceNo.7 SU8 PTENEPDLAQCFFCFKELE SequenceNo.8 SU9 DLAQCFFCFKELEGWEPD SequenceNo.9 SU10 FFCFKELEGWEPDDDPIG SequenceNo.10 MIX3 SU11 ELEGWEPDDDPIGPGTVAYA SequenceNo.11 SU12 DDDPIGPGTVAYACNTSTLG SequenceNo.12 SU13 GTVAYACNTSTLGGRGG SequenceNo.13 SU14 NTSTLGGRGGRITREEHK SequenceNo.14 SU15 GGRGGRITREEHKKHS SequenceNo.15 MIX4 SU16 RITREEHKKHSSGCAFL SequenceNo.16 SU18 EHKKESSGCAFLSVKKQFE SequenceNo.17 SU20 GCAFLSVKKQFEELTLGEF SequenceNo.18 SU21 VKKQFEELTLGEFLKLDRER SequenceNo.19 SU22 LTLGEFLKLDRERAKNKIAK SequenceNo.20 MIX5 SU23 KLDREKAKNKIAKETNNKKK SequenceNo.21 SU24 KNKIAKETNNKKKEFEETAK SequenceNo.22 SU25 TNNKKKETEETAKKVRRAIE SequenceNo.23 SU26 EFEETAKKVRRAIEQLA SequenceNo.24 SU27 AKKVRRAIEQLAAMD SequenceNo.25

(45) In addition, five types of peptide mixtures (MIX1 to MIX5) composed of five peptides were prepared in the order from SU1 to SU27 (SU17 and SU19 were retired), for example, the peptide mixture of SU1 to SU5, the peptide mixture of SU6 to SU10, etc.

(46) 2) Preparation of Monocyte-Derived Dendritic Cell and CD4-Positive T Cell

(47) Peripheral blood mononuclear cells (hereinafter referred to as PBMC) were separated from peripheral blood of healthy human whose HLA genotype is HLA-DRB1*0101/HLA-DRB1*0901, using Ficoll (Ficoll-Paque PLUS; GE Healthcare) layer method. PBMCs (2?10.sup.6 cells/well) were plated on a 24-well plate and cultured in a 5% human serum-containing medium (1 mL of 5% human serum in AIM-V) supplemented with recombinant IFN-? (final concentration of 10 ng/mL) at 37? C. in a CO.sub.2 incubator. Two hours later, the resultant was treated with mitomycin C (MMC, Kyowa Hakko) for 45 minutes to inactivate the PBMC. The remaining adherent PBMCs after washing the MMC were referred to as monocyte-derived antigen-presenting cells (PBMC-Ad). Further, CD4-positive T cells were obtained from non-adherent PBMCs (PBMC-nonAd) obtained in induction of PBMCs-Ad using Easy Sep (VERITAS).

(48) 3) Establishment of Th Cell Group Comprising Sur/Th Cell Using Synthetic Peptide

(49) Co-culture of the PBMCs-Ad prepared in this Example 2) and CD4-positive T cells (1?10.sup.6 cells/well) was started in the presence of the peptide in which five Survivin overlapping peptides prepared in this Example 1) were mixed (MIX1 to MIX5, final concentration of 10 ?g/mL) in 1 mL of 5% human serum in AIM-V in a CO.sub.2 incubator at 37? C.

(50) After seven days from the start of the co-culture, autologous CD4-positive T cells during the culturing were restimulated using the PBMCs-Ad treated with recombinant IFN-? as on the first day and the peptides MIX1 to MIX5. After a further two days, recombinant IL-2 was added to a final concentration of 10 U/mL. Further, on Day 14 from the start of the co-culture, the second restimulation was performed on the PBMCs-Ad prepared by the same treatment as on Day 7 and on the autologous CD4-positive T cells cultured for 14 days. Furthermore, after 21 days from the start of the co-culture, the same restimulation as on Day 14 was repeated.

(51) The cells were collected, and in a 96-well U-bottom plate (BD Biosciences) with 200 ?L of 5% human serum in AIM-V, each of MIX1, MIX2, MIX3, MIX4, and MIX5 (10 g/mL) was added to the PBMCs (1?10.sup.5 cells/well) and the Th cell group (4?10.sup.4 cell/well) comprising Sur/Th cells previously stained with PE-labeled anti-CD4 antibodies, and the resultants were co-cultured in a CO.sub.2 incubator at 37? C. for 2 hours. Thereafter 4 ?L of brefeldine A 500 ?g/mL (BFA; Sigma, Ayrshire) was added and the resultants were further co-cultured for 4 hours. The cells were collected, and 200 ?L of Fixation and Permeabilization solution (BD Biosciences) was added thereto. After being left to stand at room temperature for 20 minutes, the resultant was washed with 0.5% BSA/PBS. FITC-labeled IFN-? antibodies were added to the resultant, which was stained at room temperature for 15 minutes. The resultant was washed with 0.5% BSA/PBS, and a fluorescence signal was incorporated thereinto using flowcytometry (FACS Calibur, BD Biosciences). By using CellQuest? (BD Biosciences), 3-colour analysis was performed. The results are shown in FIG. 1.

(52) As shown in FIG. 1, a Th cell group comprising Sur/Th cells which react specifically with MIX4 was obtained.

(53) 4) Identification of Polypeptide

(54) The polypeptide was identified by using the Th cell group obtained in this Example 3) comprising Sur/Th cells which react specifically with MIX4.

(55) In a 96-well U-bottom plate (BD Biosciences) with 200 ?L of 5% human serum in AIM-V, each of SU16, SU18, SU20, SU21, and SU22 was added, to a final concentration of 10 g/mL, to the PBMCs (1?10.sup.5 cells/well) and the Th cell group (4?10.sup.4 cell/well) previously stained with PE-labeled anti-CD4 antibodies, the cell group comprising the above-described Sur/Th cells which react specifically with cells using MIX4. The resultants were co-cultured in a CO.sub.2 incubator at 37? C. for 2 hours. Thereafter 4 ?L each of brefeldine A 500 ?g/mL (BFA; Sigma, Ayrshire) was added and the resultants were further co-cultured for 4 hours. The cells were collected, and 200 ?L of Fixation and Permeabilization solution (BD Biosciences) was added thereto. After being left to stand at room temperature for 20 minutes, the resultant was washed with 0.5% BSA/PBS. FITC-labeled IFN-? antibodies were added to each resultant, which was stained at room temperature for 15 minutes. The resultant was washed with PBS containing 0.5% BSA, and a fluorescence signal was incorporated thereinto using flowcytometry (FACS Calibur, BD Biosciences). By using CellQuest? (BD Biosciences), 3-colour analysis was performed. The results are shown in FIG. 2.

(56) As shown in FIG. 2, the observation of the cells that antigen-specifically express IFN-? in the cells supplemented with SU18 confirmed that SU18 was a polypeptide having epitopes presented by HLA class II molecules specific to Survivin.

Examination of HLA-DRB1*0101-Restricted SU18 Recognition Site

(57) 1) Confirmation of HLA-Restrictivity

(58) HLA-restrictivity for SU18 was confirmed by using inhibitory antibodies and the Th cell group obtained in Example 1-4) comprising Sur/Th cells which react specifically with SU18.

(59) In a 96-well U-bottom plate (BD Biosciences) with 200 ?L of 5% human serum in AIM-V, each of anti-HLA-DP antibodies (Serotech), anti-HLA-DQ antibodies (Serotech) and anti-HLA-DR antibodies (BD Biosciences) was added, to a final concentration of 5 ?g/mL, to the PBMCs (1?10.sup.5 cells/well) and the above-described Th cell group (5?10.sup.4 cell/well) comprising Sur/Th cells which react specifically with SU18. The resultants were co-cultured in the presence of SU18 peptides in a CO.sub.2 incubator at 37? C. for 24 hours. After the culturing, the IFN-? contained in the culture supernatant was measured by using an ELISA kit (BD Biosciences). The results are shown in FIG. 3.

(60) As shown in FIG. 3, the inhibition of IFN-? production by the anti-HLA-DR antibodies confirmed that SU18 was restricted by HLA-DR.

(61) 2) Confirmation of HLA-DR-Restrictivity

(62) Since the HLA genotype of the healthy individual whose peripheral blood was taken in Example 1-2) was HLA-DRB1*0101 and HLA-DRB1*0901, HLA-DR-restrictivity was confirmed by using allogeneic antigen-presenting cells to the Th cell group obtained in Example 1-4) comprising Sur/Th cells which react specifically with SU18.

(63) Each of SU18 (cognate) and control peptides (irrelevant) was added, to a final concentration of 10 ?g/mL, to allogeneic PBMCs (1?10.sup.5 cells/well) whose HLA genotypes are HLA-DRB1*1201/HLA-DRB1*1405, HLA-DRB1*0410/HLA-DRB1*1201, HLA-DRB1*0405/HLA-DRB1*0901, HLA-DRB1*0401/HLA-DRB1*0901, HLA-DRB1*0101/HLA-DRB1*0802, and HLA-DRB1*0101/HLA-DRB1*0101. After 2-hour treatment, each resultant was co-cultured with the above-described Th cell group (5?10.sup.1 cell/well) comprising Sur/Th cells which react specifically with SU18 in a 96-well U-bottom plate (BD Biosciences) with 200 ?L of 5% human serum in AIM-V in a CO.sub.2 incubator at 37? C. for 24 hours. After the culturing, the IFN-? contained in the culture supernatant was measured by using an ELISA kit (BD Biosciences). The results are shown in FIG. 4.

(64) As shown in FIG. 4, from the fact that IFN-? was produced when the PBMC whose HLA genotype is HLA-DRB1*0101/HLA-DRB1*0802 and HLA-DRB1*0101/HLA-DRB1*0101 was used, SU18 was confirmed to be restricted by HLA-DRB1*0101 among HLA-DR.

(65) 3) Confirmation of Recognition Site in Partially Deleted SU18

(66) The recognition site in partially deleted SU18 was confirmed by using the Th cell group obtained in Example 1-4) comprising Sur/Th cells which react specifically with SU18 and the overlapping peptides T1 to T11 shown in Table 2, which are peptides for stimulation.

(67) TABLE-US-00002 TABLE2 T1 EHKKHSSGCAFL SequenceNo.26 T2 FEKKHSSGCAFLS SequenceNo.27 T3 EHKKHSSGCAFLSV SequenceNo.28 T4 EHKKESSGCAFLSVK SequenceNo.29 T5 HKKHSSGCAFLSVKK SequenceNo.30 T6 KKHSSGCAELSVKKQ SequenceNo.31 T7 HSSGCAFLSVKKQF SequenceNo.32 T8 HSSGCARSVKKQFE SequenceNo.33 T9 SSGCAFLSVKKQFE SequenceNo.34 T10 SGCAFLSVKKQFE SequenceNo.35 T11 GCAFLSVKKQFE SequenceNo.36

(68) In a 96-well U-bottom plate (BD Biosciences) with 200 ?L of 5% human serum in AIM-V, each of the overlapping peptides T1 to T11 was added, to a final concentration of 10 g/mL, to the PBMCs (1?10.sup.5 cells/well) and the above-described Th cell group (5?10.sup.4 cell/well) comprising Sur/Th cells which react specifically with SU18. The resultants were co-cultured in a CO.sub.2 incubator at 37? C. for 24 hours. After the culturing, the IFN-? contained in the culture supernatant was measured by using an ELISA kit (BD Biosciences). The results are shown in FIG. 5.

(69) As shown in FIG. 5, from the fact that IFN-? was produced and antigen-specific reaction was observed when the overlapping peptide used was T6 (peptide in which the first two amino acids from each of the N and C terminus of SU18 were deleted), T7 (peptide in which the first one amino acid from the C terminus of SU18 and the first three amino acids from the N terminus of SU18 were deleted), T8 (peptide in which the first four amino acids from the N terminus of SU18 were deleted), T9 (peptide in which the first five amino acids from the N terminus of SU18 were deleted), T10 (peptide in which the first six amino acids from the N terminus of SU18 were deleted), and T11 (peptide in which the first seven amino acids from the N terminus of SU18 were deleted), it was confirmed that at least the peptide comprising the peptide of SEQ ID NO:37, GCAFLSVKKQ (G represents glycine; C cysteine; A alanine; F phenylalanine; L leucine; S serine; V valine; K lysine; and Q glutamine) was able to induce Survivin-specific Sur/Th cells.

Examination of HLA-DRB1*1201/HLA-DRB1*1502-Restricted SU18 Recognition Site

(70) 1) Establishment of Th Cell Group Comprising Sur/Th Cells

(71) By the 28-day co-culture according to the method described in Example 1-2) and 3), a Th cell group comprising Sur/Th cells was prepared from peripheral blood of a healthy individual whose HLA genotype is HLA-DRB1*1201/HLA-DRB1*1502. Further, to establish a single cell group, a 96-well U-bottom plate was provided with the culture containing 200 ?L of the complex medium of human serum and fetal calf serum (2.5% human serum, 2.5% fetal calf serum in AIM-V), PBMCs-Ad (5?10.sup.4 cells/well), recombinant IL-2 (final concentration of 20 U/mL), recombinant IL-7 (final concentration of 10 ng/mL), and phytohemagglutinin (PHA, SEIKAGAKU Co., final concentration of 5 ?g/mL). The Th cell group (1 cell/well) was added thereto and the resultant was co-cultured in a CO.sub.2 incubator at 37? C.

(72) After 14 days from the start of the co-culture, the wells which showed blast transformation of the cells were scaled up into a 48-well plate with 500 ?L of 5% fetal calf serum in AIM-V. Thereafter, restimulation was performed with the PBMCs-Ad pulsed with SU18 at 1-week intervals to obtain Sur/Th cell clones.

(73) 2) Confirmation of Recognition Site in Partially Deleted SU18

(74) The recognition site in partially deleted SU18 was confirmed by the ELISPOT assay described below using the Sur/Th cell clones prepared in 1) of this Example 3 and the peptides for stimulation, T1 to T10 shown in Table 3.

(75) TABLE-US-00003 TABLE3 T1 EHKKHSSGCAFL SequenceNo.26 T2 ERKKHSSGCAFLS SequenceNo.27 T3 EHKKHSSGCAFLSV SequenceNo.28 T4 EHKKHSSGCAFLSVK SequenceNo.29 T5 HKKHSSGCAFLSVKK SequenceNo.30 T6 KKHSSGCAFLSVKKQ SequenceNo.31 T7 KHSSGCAFLSVKKQF SequenceNo.32 T8 HSSGCAFLSVKKQFE SequenceNo.33 T9 SSGCAFLSVKKQFE SequenceNo.34 T10 SGCAFLSVKKQFE SequenceNo.35 T11 GCAFLSVKKQFE SequenceNo.36

(76) The ELISPOT assay was performed by using an ELISPOT plate (MAHA S4510, Millipore) and an ELISPOT kit (Mabtech, Nacka). According to the method of using the kit, specifically-induced Th cells and T-APCs were cultured on the ELISPOT plate coated with anti-human IFN-? antibodies (clone name 1-D1K, mAb) at a concentration of 2 g/mL in the presence of sufficient amount of antigen peptides. After 20 hours from the start of the culture, the culture supernatant was washed with the washing solution (0.05% Tween 20/PBS). The biotinylated anti-human IFN-? antibodies (mAb) at a concentration of 0.2 ?g/mL was further added to the plate, and the resultant was allowed to react at 4? C. for 16 hours. After the resultant was washed again with the washing solution above, each well was filled with 100 ?L of PBS/streptavidin-AP solution (the kit above) and allowed to react at room temperature for 1 hour. Then, the supernatant was washed away with the washing solution above and the resultant was filled with BCIP/NBT-Bule Liquid substrate solution (Sigma). After 10-minute reaction, the resultant was washed with distilled water to stop the reaction. After completion of the reaction, the plate was dried and then the measurements were made by using CTL ImmunoSpot Plate Reader (Cellular Technology). The results are shown in FIG. 6.

(77) As shown in FIG. 6, antigen-specific reaction was observed in T3 (peptide in which the first five amino acids from the C terminus of SU18 were deleted) and T8 (peptide in which the first four amino acids from the N terminus of SU18 were deleted). Hence, it was confirmed that SU18 was able to induce Survivin-specific Sur/Th cells even with deletion of the first four amino acids from the N terminus or the first five amino acids from the C terminus. Also, it became clear that SU18 was a polypeptide which has immunotherapeutic effect not only in patients whose HLA genotype is HLA-DRB1*0101/HLA-DRB1*0901 but also in those whose HLA genotype is HLA-DRB1*1201/HLA-DRB1*1502.

Examination of HLA-DQB1*0601-Restricted SU18 Recognition Site

(78) 1) Confirmation of HLA-Restrictivity

(79) CD4-positive T cells were prepared from the peripheral blood of healthy individual Y whose HLA genotype is HLA-DQB1*0302/HLA-DQB1*0601 by the same technique as that used in Example 1-2) and a Th cell group comprising Sur/Th cells which react specifically with SU18 was obtained by the same technique as that used in Example 1-3) and 4). HLA-restrictivity for SU18 was confirmed by using inhibitory antibodies and this Sur/Th cell group which reacts specifically with SU18.

(80) In a 96-well U-bottom plate (BD Biosciences) with 200 ?L of 5% human serum in AIM-V, each of anti-HLA-DP antibodies (Serotech), anti-HLA-DQ antibodies (Serotech) and anti-HLA-DR antibodies (BD Biosciences) was added, to a final concentration of 5 ?g/mL, to the PBMCs (1?10.sup.5 cells/well) and the above-described Th cell group (5?10.sup.4 cell/well) comprising Sur/Th cells which react specifically with SU18. The resultants were co-cultured in the presence of SU18 peptides in a CO.sub.2 incubator at 37? C. for 24 hours. After the culturing, the IFN-? contained in the culture supernatant was measured by using an ELISA kit (BD Biosciences). The results are shown in FIG. 7.

(81) As shown in FIG. 7, the inhibition of IFN-? production by the anti-HLA-DQ antibodies confirmed that SU18 was restricted by HLA-DQ.

(82) 2) Confirmation of HLA-DQ-Restrictivity

(83) HLA-DQ-restrictivity was confirmed by using allogeneic antigen-presenting cells to the Th cell group obtained in this Example 1) comprising Sur/Th cells which react specifically with SU18.

(84) Each of SU18 (cognate) and control peptides (irrelevant) was added, to a final concentration of 10 ?g/mL, to allogeneic PBMCs (1?10.sup.5 cells/well) whose HLA genotypes are HLA-DQB1*0301/HLA-DQB1*0302, HLA-DQB1*0401/HLA-DQB1*0602, HLA-DQB1*0302/HLA-DQB1*0401, and HLA-DQB1*0301/HLA-DQB1*0601. After 2-hour treatment, each resultant was co-cultured with the above-described Th cell group (5?10.sup.4 cell/well) comprising Sur/Th cells which react specifically with SU18 in a 96-well U-bottom plate (BD Biosciences) with 200 ?L of 5% human serum in AIM-V in a CO.sub.2 incubator at 37? C. for 24 hours. After the culturing, the IFN-? contained in the culture supernatant was measured by using an ELISA kit (BD Biosciences). The results are shown in FIG. 8.

(85) As shown in FIG. 8, from the fact that IFN-g was not produced when the PBMCs whose HLA genotype is HLA-DQB1*0301/HLA-DQB1*0302 and HLA-DQB1*0302/HLA-DQB1*0401 was used and that IFN-? was produced when the PBMC whose HLA genotype is HLA-DQB1*0301/HLA-DQB1*0601 was used, SU18 was confirmed to be restricted by HLA-DQB1*0601 among HLA-DQ.

(86) 3) Confirmation of Recognition Site in Partially Deleted SU18

(87) The recognition site in partially deleted SU18 was confirmed by using the Th cell group obtained in 1) of this Example 4 comprising Sur/Th cells which react specifically with SU18 and the overlapping peptides T1 to T10 shown in Table 3, which are peptides for stimulation.

(88) In a 96-well U-bottom plate (BD Biosciences) with 200 ?L of 5% human serum in AIM-V, each of the overlapping peptides T1 to T10 was added, to a final concentration of 10 ?g/mL, to the PBMCs (1?10.sup.5 cells/well) and the above-described Th cell group (5?10.sup.4 cell/well) comprising Sur/Th cells which react specifically with SU18. The resultants were co-cultured in a CO.sub.2 incubator at 37? C. for 24 hours. After the culturing, the IFN-? contained in the culture supernatant was measured by using an ELISA kit (BD Biosciences). The results are shown in FIG. 9.

(89) As shown in FIG. 9, from the fact that IFN-? was produced and antigen-specific reaction was observed when the overlapping peptide used was T3 (peptide in which the first five amino acids from the C terminus of SU18 were deleted), T4 (peptide in which the first four amino acids from the C terminus of SU18 were deleted), T5 (peptide in which the first three amino acids from the C terminus of SU18 and the first one amino acid from the N terminus of SU18 were deleted), T6 (peptide in which the first two amino acids from each of the N and C terminus of SU18 were deleted), and T7 (peptide in which the first one amino acid from the C terminus of SU18 and the first three amino acids from the N terminus of SU18 were deleted), it was confirmed that at least the peptide comprising the peptide of SEQ ID NO: 57, KHSSGCAFLSV (K represents lysine; H histidine; S serine; G glycine; C cysteine; A alanine; F phenylalanine; L leucine; and V valine) was able to induce a Survivin-specific Sur/Th cells.

(90) 4) Confirmation of Recognition Site in Partially Substituted SU18

(91) The recognition site in partially substituted SU18 was confirmed by using the Th cell group obtained in this Example 1) comprising Sur/Th cells which react specifically with SU18 and the partially substituted peptides S1 to S17, peptides for stimulation shown in Table 4, in which each amino acid of SU18 was substituted with alanine (A) or glycine (G).

(92) In a 96-well U-bottom plate (BD Biosciences) with 200 ?L of 5% human serum in AIM-V, each of the partially substituted peptides S1 to S17 was added, to a final concentration of 10 ?g/mL, to the PBMCs (1?10.sup.5 cells/well) and the above-described Th cell group (5?10.sup.4 cell/well) comprising Sur/Th cells which react specifically with SU18. The resultants were co-cultured in a CO.sub.2 incubator at 37? C. for 24 hours. After the culturing, the IFN-? contained in the culture supernatant was measured by using an ELISA kit (BD Biosciences). The results are shown in FIG. 10.

(93) As shown in FIG. 10, it was confirmed that IFN-? was hardly produced when the partially substituted peptide used was S4 (peptide in which lysine, the fourth from the N terminus of SU18, was substituted with alanine), S5 (peptide in which histidine, the fifth from the N terminus of SU18, was substituted with alanine), S7 (peptide in which serine, the seventh from the N terminus of SU18, was substituted with alanine), and S9 (peptide in which cysteine, the ninth from the N terminus of SU18, was substituted with glycine). That is, it was confirmed that at least the peptide of SEQ ID NO:55, XXXKHXSXCXXXXXXXXXX (Xaa represents any amino acid; K lysine; H histidine; S serine; and C cysteine) was able to induce Survivin-specific Sur/Th cells.