MONOCLONAL ANTIBODY AGAINST STIM1
20230058212 · 2023-02-23
Inventors
- OLIVIER MIGNEN (LO-GONNA-DAOULAS, FR)
- YVES RENAUDINEAU (TOULOUSE, FR)
- MARJOLAINE DEBANT (HENDAYE, FR)
- PATRICE HEMON (SAINT-DIVY, FR)
Cpc classification
C07K2317/30
CHEMISTRY; METALLURGY
C07K2317/76
CHEMISTRY; METALLURGY
C07K16/28
CHEMISTRY; METALLURGY
C07K2317/34
CHEMISTRY; METALLURGY
A61P37/06
HUMAN NECESSITIES
C07K2317/92
CHEMISTRY; METALLURGY
A61P35/00
HUMAN NECESSITIES
International classification
Abstract
The present invention relates to a compound that specifically binds to the region between amino acid residues 58 and 201, preferably 97 and 127 of human STIM1 (SEQ ID NO: 1). The present invention also relates to a composition comprising a therapeutically effective amount of the compound, a host cell that produces an isolated antibody, an isolated nucleic acid sequence encoding the isolated antibody and an expression vector comprising the nucleic acid. The present invention additionally relates to a method of producing the isolated antibody, to the isolated antibody for its use as a drug, especially for its use in treating a condition or a disorder in which the STIM1 protein localized to the plasma membrane of the cells is overexpressed, and to an isolated protein fragment consisting of the region between amino acid residues 97 and 127 for developing modulators of STIM1 (SEQ ID NO: 1).
Claims
1-25. (canceled)
26. A compound that specifically binds to the region between amino acid residues 58 and 201 of the STIM1 amino acid sequence SEQ ID NO: 1 and modulates STIM1 activity.
27. The compound according to claim 26, wherein said compound specifically binds to the region between amino acid residues 97 and 127 of the STIM1 amino acid sequence SEQ ID NO: 1 and modulates STIM1 activity.
28. The compound according to claim 26, wherein said compound specifically binds to the region between amino acid residues 113 and 122 of the STIM1 amino acid sequence SEQ ID NO: 1 and modulates STIM1 activity.
29. The compound according to claim 26, said compound being an activator or an inhibitor of STIM1 activity.
30. The compound according to claim 26, said compound is selected from the group consisting of isolated antibodies or fragments thereof, proteins, peptides, chemical compounds, aptamers or any biological compound.
31. The compound according to claim 30, said compound being an isolated antibody.
32. The compound according to claim 31, wherein said isolated antibody comprises at least one sequence selected from the group consisting of: a variable heavy (V.sub.H) chain complementary determining region (CDR) 1 having the amino acid sequence SEQ ID NO: 3; a variable heavy (V.sub.H) chain CDR2 having the amino acid sequence SEQ ID NO: 4; a variable heavy (V.sub.H) chain CDR3 having the amino acid sequence SEQ ID NO: 5; a variable light (V.sub.L) chain CDR1 having the amino acid sequence SEQ ID NO: 6; a variable light (V.sub.L) chain CDR2 having the amino acid sequence SEQ ID NO: 7; and a variable light (V.sub.L) chain CDR3 having the amino acid sequence SEQ ID NO: 8.
33. The compound according to claim 31, wherein said isolated antibody comprises: a variable heavy (V.sub.H) chain CDR1 having the amino acid sequence SEQ ID NO: 3; a variable heavy (V.sub.H) chain CDR2 having the amino acid sequence SEQ ID NO: 4; a variable heavy (V.sub.H) chain CDR3 having the amino acid sequence SEQ ID NO: 5; a variable light (V.sub.L) chain CDR1 having the amino acid sequence SEQ ID NO: 6; a variable light (V.sub.L) chain CDR2 having the amino acid sequence SEQ ID NO: 7; and a variable light (V.sub.L) chain CDR3 having the amino acid sequence SEQ ID NO: 8.
34. The compound according to claim 31, wherein said isolated antibody comprises: a) a variable light chain comprising the sequence SEQ ID NO: 9; and b) a variable heavy chain comprising the sequence SEQ ID NO: 10.
35. The compound according to claim 31, wherein said isolated antibody is a monoclonal antibody.
36. The compound according to claim 31, wherein said isolated antibody is a chimeric, human or humanized antibody.
37. The compound according to claim 31, wherein said isolated antibody is modified with a drug, with another antibody, with a fluorophore, or with any other molecules or ligands selected from nanoparticles, metals, or radioelements.
38. A composition comprising a therapeutically effective amount of a compound according to claim 26.
39. A host cell that produces an isolated antibody according to claim 31.
40. An isolated nucleic acid sequence encoding an antibody, and comprising a nucleic acid encoding at least one sequence selected from the group consisting of: a variable heavy (V.sub.H) chain CDR1 having the amino acid sequence SEQ ID NO: 3; a variable heavy (V.sub.H) chain CDR2 having the amino acid sequence SEQ ID NO: 4; a variable heavy (V.sub.H) chain CDR3 having the amino acid sequence SEQ ID NO: 5; a variable light (V.sub.L) chain CDR1 having the amino acid sequence SEQ ID NO: 6; a variable light (V.sub.L) chain CDR2 having the amino acid sequence SEQ ID NO: 7; and a variable light (V.sub.L) chain CDR3 having the amino acid sequence SEQ ID NO: 8.
41. An expression vector comprising a nucleic acid according to claim 40.
42. A method of producing an antibody comprising culturing the host cell according to claim 39 under conditions that result in production of said antibody, and isolating said antibody from the host cell or culture medium of the host cell.
43. A method of treating a condition or a disorder in which the STIM1 protein localized to the plasma membrane of the cells is overexpressed comprising the administration of a compound according to claim 26 to a subject in need of treatment.
44. The method according to claim 43, wherein the condition or disorder is selected from a pathology with an increase in specific cells of mSTIM1 expression, Systemic Lupus Erythematous, Chronic Lymphocytic Leukemia, an autoimmune disease, immunological, cancer, cardiovascular, muscular, neurological, hematological, inflammatory, respiratory, infectious endocrine, cutaneous, gastrointestinal, metabolic, allergic diseases, transplantation with an increase in specific expression cells of mSTIM1, rheumatoid arthritis, Sjogren syndrome, and cutaneous lupus.
45. An isolated protein fragment consisting of the region between amino acid residues 97 and 127 of the STIM1 amino acid sequence SEQ ID NO: 1 or between amino acid residues 113 and 122 of the STIM1 amino acid sequence SEQ ID NO: 1.
Description
BRIEF DESCRIPTION OF THE FIGURES
[0106]
[0107]
[0108]
[0109]
[0110] (GAM FITC). Labeling in cell lines show an intra-cytoplasmic labeling as well as a surface staining. In each condition, cells are incubated with 50 μl of purified antibody at 0.5 μg at +4° C. during 30 min and then incubated with a secondary antibody (GAM FITC 30 min at +4° C.) to reveal the staining.
[0111]
[0112]
[0113]
[0114] (PE). Panel A: Labeling of STIM1 using the PE coupled B-M4 mAb in DAUDI, RAMOS and JOK B cell lines and in endothelial cell line HUVEC. Cells were either left intact to labeled mSTIM1 or permeablized to label total STIM1 (mSTIM1+ intracellular STIM1). 100 μl of cells were incubated with the PE coupled B-M4 antibody (2 μg and 4 μg for membrane and intracellular staining respectively), at 4° C. during 30 min. Panel B presents the Mean Fluorescence Intensity (MFI) of mSTIM1 labeling with the PE coupled B-M4 antibody in HEK293 cells over-expressing STIM1 (++) compared to cells transfected with an empty vector (+). Cells are incubated with PE coupled B-M4 antibody (2 μg) 4° C. during 30 min.
[0115] (SEQ ID NOs: 17 and 9, respectively) and heavy chains (SEQ ID NOs: 18 and 10, respectively) of the anti-STIM1 antibody clone B-M4. Total RNA is extracted and reverse transcription of the RNA (5′CDS primer) was done. Amplification of variable chains by RACE-PCR (various reverse primer) and cloning of the amplicons in shuttle vector were done. The figure shows the sequences after analysis of the complementarity determining region (CDR) in heavy chain variable domain (nucleotide and amino acid sequence) and light chain variable domain (nucleotide and amino acid sequence).
[0116]
[0117]
[0118]
[0119]
[0120]
[0121]
[0122]
[0123]
[0124]
[0125]
[0126]
[0127] Chambers and migration was stimulated by a CCL12 chemokine gradient. Anti-STIM1 clone B-M4 mAb (10 μg/ml) inhibits both the trans-endothelial migration through an endothelial cell layer (HUVEC cells) of JOK B cell line (Panel A) and the migration through a filter of DAUDI cell line (Panel B).
[0128] (Annexin V-/PI-) was evaluated by Anexin V/PI staining in flow cytometry.
[0129]
[0130]
[0131]
EXAMPLES
Example 1
Process of Preparation of the Monoclonal Antibody B-M4
[0132] An antibody of the invention (named “B-M4”) was obtained by immunization of mice injected with two peptides corresponding to the SAM domain of the STIM1 protein: peptides 2B (SEQ ID NO: 2) and 2A (SEQ ID NO: 19, KLSFEAVRNIHKLMDDDANGDVDVEESDEFLRED corresponding to amino acids 62-95 of STIM1) (see
[0133] By Western blot and ELISA approaches, it has been demonstrated that the antibody B-M4 is a specific antibody recognizing STIM1 and more specifically the region of this protein corresponding to amino acids (aa) 97 to 127 of the SAM domain of STIM1 protein (see
[0134] Protein extraction was performed on 10.sup.7 B cells for 30 on ice with a lysis buffer containing: 20 mM Tris HCl pH 7.5, 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1% Triton X100, 2.5 mM Na+ pyrosodium tetraphosphate, 1 mM glycerophosphate, 1 mM Na+orthovanadate, 1 μg/ml leupeptin and a protease inhibitor cocktail. Protein extracts were sonicated and centrifuged for 12 min at 16,000 g. Protein concentration of cell lysates were determined using the Folin method. 75 μg of proteins were run on SDS-PAGE 7.5% polyacrylamide gels in denaturing conditions, and then transferred onto PVDF (PolyVinyliDene Fluoride) membrane sheets. Unspecific blocking was done by incubation with 5% fat milk in PBS, 0.1% tween 20 for 1 hour. Blots were incubated overnight with 5% fat milk in PBS, 0.1% tween 20, containing mouse monoclonal anti-STIM1 (clone: BY-12, 1:1,000 dilution) or mouse monoclonal anti-GAPDH antibody (6C5 clone Abcam; 1:10,000 dilution,). Blots were incubated with Horseradish Peroxydase (HRP)-conjugated goat anti-mouse after washing with PBS, 0.1% tween 20 and revealed with the Luminata Forte reagent. All results were normalized upon GAPDH quantification.
[0135] For the ELISA measurements, 5×10.sup.6 cells were loaded for 1 hour on 96 wells pre-coated CelITak plates. Cells were fixed using PFA 4% for 10 min at room temperature (RT). Cells were then washed with Phosphate Buffer Solution (PBS) and next incubated with PBS supplemented with 5% of fat milk for 30 minutes. Cells were next incubated with the anti-STIM1 antibody directed against the N terminus (clone: B-Y12, 1 μg/ml) for 1h30 at RT. After 3 washes with PBS, cells were incubated with in PBS+5% of fat milk containing the peroxidase conjugated secondary antibody for 30 min at RT. After 3 washes, the substrate for peroxidase conjugated secondary antibody (SIGMAFAST™ OPD tablets, Sigma-Aldrich) was added for 20 min at 37° C. and the reaction was stopped using H.sub.2SO.sub.4 solution. ELISA plate was read at 392 nm in absorbance.
[0136] By Flow cytometry, direct or indirect recognition by monoclonal antibody B-M4 of the plasma membrane-bound STIM1 protein (mSTM1) or the endoplasmic reticulum membrane has been demonstrated in different cell lines (see
[0137] 5×10.sup.6 B cells were used per condition. Cells were either left intact or permeablized to labeled mSTIM1 or total STIM1. B cells were centrifuged for 5 min at 1500 rpm and incubated with 100 μL of PBS containing anti-STIM1 antibody directed against the N terminus (clone: PE coupled B-Y12; 2 μg for mSTIM1 and 4 pg for total STIM1 or 0.5 pL of an isotype control for 30 min on ice. After 3 washes, cells were read in PBS using a Flow cytometer (Navios, Beckman Coulter Life Sciences).
[0138] The variable domains of the heavy and light chains of the B-M4 antibody have been sequenced (see
[0139] Total RNA is extracted and reverse transcription of the RNA (5′CDS primer) was done. Amplification of variable chains by RACE-PCR (various reverse primer) and cloning of the amplicons in shuttle vector were done. Sequences of the complementarity determining region (CDR) in heavy chain variable domain (nucleotide and amino acid sequence) and light chain variable domain (nucleotide and amino acid sequence) were analysis.
[0140] The affinity of this B-M4 mAb for the STIM1 protein was determined by the octet technology using a peptide corresponding to the EF-SAM domain of this protein (aa: 58 to 201). In the conditions used, B-BM4 has a KD of 3.7.10.sup.−8 (see
[0141] Evaluation of the anti-STIM1 mAb affinity for the soluble recombinant protein corresponding to the STIM1 EF-Hand domain (amino-acids 59 to 201) was determined using the Octet technology (OctetTM). The KD (kdis/kon) was determined using a 1 to 1 fitting model. EF-SAM peptide (STIM1 aa 58 to 201) was tested at 300, 200 and 133 nM. Affinity constants (Kon, Kdis) were calculated.
[0142] The epitope of the antibody anti-STIM1 clone B-M4 was identified as linear epitope with the sequence “KLISVEDLWK”. Epitope mapping was realized by epitope detection using overlapping peptide scans (Pepscan).
Example 2
Effect of the Monoclonal Antibody B-M4 on the Constitutive Entry of Ca.SUP.2+ of B Lymphocytes from Patients Suffering from CLL or LES
[0143] The antibody B-M4 inhibits the constitutive entry of Ca.sup.2+ of B lymphocytes from patients suffering from CLL or SLE. This blockage of constitutive entry is also observed in cell lines (HEK293, B-Cell Lines) (see
[0144] For constitutive Ca.sup.2+ entry (CCE) measurements, 5×10.sup.6 B cells were loaded with 2 μM of the Fura-2/AM fluorescent dye in the presence of 2 μM Pluronic acid for 30 min at 37° C. in a medium containing: 135 mM NaCl, 5 mM KCl, 1 mM MgCl.sub.2, 10 mM HEPES, 10 mM Glucose with an 7.4-adjusted pH supplemented with 5 mM CaCl.sub.2. Cells were washed and left to attach in the same buffer on 12 mm CelITaK precoated coverslides for 20 min. Fura-2 was excited alternatively at 340 and 380 nm using a monochromator, and fluorescence emission was recorded at 510 nm using a fluorescence microscope equipped with a dichroic mirror and a 14-bit CCD camera. After the stabilization of basal fluorescence, the extracellular medium was replaced by Buffer A supplemented with 0.5 mM CaCl.sub.2 for 100 s and again with the original 5 mM CaCl.sub.2-containing Buffer A after curve stabilization. Values of the ratio of fluorescence measured at 340 and 380 nm are collected over time and normalized.
[0145] This antibody has no effect on activated Ca.sup.2+ entry by the effect of thapsigargin on the release of intracellular calcium stores (SOCE: Store Operated Ca.sup.2+ Entry) (see
[0146] For SOCE measurement 5×10.sup.5 cells were seeded in precoated CelITak 96 wells. Cells are loaded with Fura-2 acetoxymethyl ester (Fura-2 QBTTM, Molecular Probes) fluorochrome according to the manufacturer's protocol. The Fura-2 QBT™ was aspirated and replaced by an equal volume of free Ca.sup.2+ Hepes-buffered solution containing (in mM): 135 NaCl, 5 KCl, 1 MgCl.sub.2, 1 EGTA, 10 Hepes, 10 glucose, pH adjusted at 7.45 with NaOH. Intracellular calcium level variations were monitored by using the FlexStation 3™ (Molecular Devices, Berkshire, UK), Dual excitation wavelength capability permits ratiometric measurements of Fura-2AM peak emissions (510 nm) after excitations at 340 nm (bound to Ca.sup.2+) and 380 nm (unbound to Ca.sup.2+). Modifications in the 340/380 ratio reflect changes in intracellular- free Ca.sup.2+ concentrations. The SOCE was elicited by releasing the Ca.sup.2+ stores from the endoplasmic reticulum with thapsigargin (2 μM) solution under Ca.sup.2+-free conditions to determine the magnitude of intracellular Ca.sup.2+ release (Hepes-buffered solution). Next, cells were returned to a Ca.sup.2+-containing Hepes-buffered solution to measure SOCE. The magnitude and speed of SOCE were estimated. lgm stimulation to stimulate BCR induced Ca.sup.2+ signals is realized with 10 μM of a polyclonal goat anti-human IgM in the presence of in 2 mM external Ca.sup.2+ and in a solution containing (in mM): 135 NaCl, 5 KCl, 1 MgCl.sub.2, 1 EGTA, 10 Hepes, 10 glucose, pH adjusted at 7.45 with NaOH.
Example 3
Biological Effect of the Monoclonal Antibody B-M4 on MRL/Lpr Mice
[0147] The anti-STIM1 clone B-M4 antibody treatment increases MRL/Lpr lupus prone mice survival compared to mice injected with buffer or a reference treatment such as anti-CD20 antibody (see
[0148] Only MRL/Lpr female mice were used in this work. Mrl/Lpr lupus prone mice were injected twice a week with anti-STIM1 mAb B-M4 (5 mg/Kg) compared to mice injected with mAb anti-CD20 (2.5 mg/Kg) and mice injected with PBS buffer. Clinical score is defined by addition of lymph node hypertrophy score (normal =0, moderate =1, severe =2) and cutaneous score (alopecia =1, ulceration =2) and the score of pain of mice (moderate =2 and severe =4). Mrl/Lpr lupus prone mice were injected twice a week with anti-STIM1 mAb B-M4 (10 μg) compared to mice injected with PBS buffer.
[0149] Anti-STIM1 B-M4 antibody decreases renal damage in MRL/Lpr mice. These disorders result from the exacerbated production of autoantibodies in these mice (autoimmune symptoms). The treatment of the MRL/Lpr mice with the anti-STIM clone B-M4 antibody induces in particular a reduction in the increase of the proteinuria in these mice compared to the mice injected with a control isotype (see
[0150] MRL/Lpr mice were injected with anti-STIM1 mAb B-M4 (10 μg) with or PBS buffer twice a week. Urine samples were tested for proteinuria using Multistix 10 SG (Bayer Diagnostics, Puteaux, France) on a 0-4+scale, corresponding to the following approximate protein concentrations: 0, negative or trace; 1+, 30 mg/dl; 2+, 100 mg/dl; 3+, 300 mg/dl; and 4+, 2000 mg/dl.
[0151] The treatment of lupus mice with the B-M4 antibody decreases the lymphoproliferation observed in these MRL / Lpr mice (see
[0152] MRL/Lpr mice were injected with anti-STIM1 mAb B-M4 (10 μg) with or the mAb isotype (IgG1, 10 μg) or PBS buffer twice a week. Lymph node size was measured and their weight was evaluated for each mice. The number of plasma cells in lymph node and in the blood was evaluated. Lymph node cells and blood leukocytes were incubated with 5 μg/ml of rat anti-mouse CD16/CD32 and incubated with the appropriate Abs CD138 to identify and count plasma cells by flow cytometry. Autoantibodies were detected in mice sera diluted to 1/100 by Elisa with Cardiolipin coated on place. Autoantibodies against DNA were detected using mice serum diluted to 1/1000 by Elisa with salmon sperm coated on plates.
Example 4
Effect of the Monoclonal Antibody B-M4 on Differentiation of B-Lymphocytes
[0153] Anti-STIM1 B-M4 antibody inhibits the in vitro differentiation of MRL/Lpr B-lymphocytes (see
[0154] B cells were positively sorted from murine splenocytes by using a CD19 isolation kit. B cells were cultured at a concentration of 1×10.sup.6 / mL in RPMI containing 10% FCS, L-glutamine, penicillin/streptomycin, B cells were stimulated with LPS (lipopolysaccharides) and incubated or not with 10 μg/mL of B-M4 antibody. After 3 days in culture, 2×10.sup.5 cells were cultured in Elispot plate and cells were staining with the appropriate CD138 antibody to count the number plasma cells by flow cytometry The number of anti DNA IgG secreting cells was evaluated using the classical Elispot protocol.
[0155] Anti-STIM1 B-M4 antibody reduces in vitro migration of B-cells (see
[0156] B cell migration experiments were realized with Boyden Chambers and migration was stimulated by a CCL12 chemokine gradient. Trans-endothelial migration of JOK B cell line was evaluated by measuring the migration of these cells through an endothelial cell monolayer of HUVEC cells cultured on a 5 pM pore filter. Simple migration of B cells was evaluated by measuring the migration of DAUDI B cells and B cells from CLL patients through a 5 μM pore filter.
[0157] B cells were treated all along the 24 hours of migration time with 10 μg/ml of the anti-STIM1 clone B-M4 mAb. The number of migrating cells was evaluating by counting the number of B cells in the lower chamber of the boyden chamber after 24 hours using flow cytometry. For each experimental condition, the percentage of migrated cells is normalized to what measured in the untreated control condition.
[0158] Anti-STIM1 B-M4 antibody reduces in vitro survival of B lymphocytes (see
[0159] B cells were incubated with 10 μg/ml of the anti-STIM1 clone B-M4 mAb for 48 h and cell survival was evaluated at the end of 48 hours by Anexin/PI staining in flow cytometry. For mSTIM1 detection and quantification in B cells isolated from CLL patients, membrane staining of B cells was realized with PE coupled B-M4 mAb in flow cytometry.
REFERENCE LIST
[0160] 1. EP2982982. [0161] 2. EP3062105. [0162] 3. Morrison et al., Proc. Natl. Acad. Sci. U.S.A., 81, pp. 6851-55 (1984). [0163] 4. Harlow et al.: “Antibodies: A Laboratory Manual”, Cold Spring Harbor Laboratory Press, 2nd ed. 1988. [0164] 5. Hammerling, et al.: “Monoclonal Antibodies and T-Cell Hybridomas”, Elsevier, N. Y., 1981, pp. 563-681. [0165] 6. Jones et al, Nature, 321: 522-525 (1986). [0166] 7. Riechmann et al, Nature, 332: 323-329 (1988). [0167] 8. Presta, Curr. Op. Struct. Biol. 2: 593-596 (1992).