PEPTIDE-INDUCED NK CELL ACTIVATION
20180325979 ยท 2018-11-15
Inventors
Cpc classification
C07K14/1825
CHEMISTRY; METALLURGY
A61K38/03
HUMAN NECESSITIES
Y02A50/30
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
International classification
A61K38/03
HUMAN NECESSITIES
A61K35/17
HUMAN NECESSITIES
Abstract
The invention relates to a peptide capable of activating NK cell-mediated immunity, the peptide comprising or consisting of the amino acid sequence XnAX2X1, Wherein Xn is an amino acid sequence of between 5 and 12 residues, and X1 is any amino acid; or leucine or phenylalanine; and X2 is alanine, threonine or serine. The invention further relates to an MHC class I molecule and the peptide, nucleic acids encoding the peptide, activated NK cells, and related compositions and methods, including use in methods of treatment.
Claims
1. A peptide capable of activating NK cell-mediated immunity, the peptide comprising or consisting of the amino acid sequence X.sup.nAX.sup.2X.sup.1, wherein X.sup.n is an amino acid sequence of between 5 and 12 residues, and X.sup.1 is any amino acid; or leucine or phenylalanine; and X.sup.2 is alanine, threonine or serine.
2. The peptide according to claim 1, wherein X.sup.n is an amino acid sequence of 7 residues.
3. The peptide according to claim 1 or claim 2, wherein X.sup.1 is leucine.
4. The peptide according to claim 1 or claim 2, wherein X.sup.1 is phenylalanine.
5. The peptide according to any preceding claim, wherein X.sup.2 is threonine.
6. The peptide according to any of claims 1 to 4, wherein X.sup.2 is serine.
7. The peptide according to any preceding claim, wherein the peptide amino acid sequence comprises or consists of any sequence selected from the group comprising: IVDLMCHATF (SEQ ID NO: 1); VIDAMCHATL (SEQ ID NO: 2); AANVMAASL (SEQ ID NO: 3); and FLSDVPVATL (SEQ ID NO: 4).
8. The peptide according to claim 1, wherein the peptide comprises or consists of the amino acid sequence IVDLMCHATF (SEQ ID NO: 1).
9. The peptide according to claim 1, wherein the peptide comprises or consists of the amino acid sequence VIDAMCHATL (SEQ ID NO: 2).
10. The peptide according to claim 1, wherein the peptide comprises or consists of the amino acid sequence AANVMAASL (SEQ ID NO: 3).
11. The peptide according to claim 1, the peptide comprises or consists of the amino acid sequence FLSDVPVATL (SEQ ID NO: 4).
12. The peptide according to any one of claims 1, and 3 to 6, wherein the peptide is between about 8 and about 15 amino acid residues in length.
13. The peptide according to any preceding claim, wherein the peptide is an isolated peptide.
14. A complex comprising an MHC class I molecule and the peptide according to any of the preceding claims.
15. The complex according to claim 14, wherein the MHC class 1 molecule comprises HLA-C.
16. The complex according to claim 15, wherein the HLA-C is a group 1 HLA-C.
17. The complex according to any of claims 14 to 16, wherein the MHC class I molecule comprises HLA-Cw*0102 or HLA-C*304.
18. The complex according to any of claims 14 to 17, wherein the MHC class I molecule is an MHC class I truncated at the stem region of the ?3 domain.
19. The complex according to any of claims 14 to 18, wherein the complex comprises a fusion protein of the MHC class I molecule and the peptide.
20. The complex according to any of claims 14 to 19, wherein the complex is an isolated complex.
21. A vesicle comprising the complex according to any of claims 14 to 20.
22. An activated NK cell, wherein the NK cell expresses KIR2DS2 receptor, and wherein the NK cell is activated by exposure to the peptide according to any of claims 1 to 13.
23. A nucleic acid comprising a sequence encoding a peptide according to any of claims 1 to 13.
24. The nucleic acid according to claim 23, wherein the nucleic acid further comprises a sequence encoding an MHC class I molecule.
25. The nucleic acid according to claim 23 or claim 24, wherein the nucleic acid is a plasmid vector for vaccination.
26. A virus comprising the nucleic acid according to claim 23 or claim 24.
27. A dendritic cell expressing, or capable of expressing, the complex according to any of claims 14 to 20.
28. An immunogenic composition comprising one or more of: the peptide according to any of claims 1 to 13; the complex according to any of claims 14 to 20; the vesicle according to claim 21; the dendritic cell according to claim 27; the nucleic acid according to any of claims 23 to 25; and the virus according to claim 26.
29. A method of treatment or prophylaxis of an NK cell regulated disease comprising the administration of: the peptide according to any of claims 1 to 13; the immunogenic composition according to claim 30; the complex according to any of claims 14 to 20; the vesicle according to claim 21; the dendritic cell according to claim 27; the activated NK cell according to claim 22; the nucleic acid according to any of claims 23 to 25; or the virus according to claim 26.
30. An agent for use in the prophylaxis or treatment of an NK cell regulated disease, the agent comprising or consisting of: the peptide according to any of claims 1 to 13; the immunogenic composition according to claim 28; the complex according to any of claims 14 to 20; the vesicle according to claim 21; the dendritic cell according to claim 27; the activated NK cell according to claim 22; the nucleic acid according to any of claims 23 to 25; or the virus according to claim 26.
31. A method of treatment or prophylaxis of a patient for an NK cell regulated disease comprising determining if a patient produces KIR2DS2-expressing NK cells; wherein if the patient produces KIR2DS2-expressing NK cells, administering: the peptide according to any of claims 1 to 13; the immunogenic composition according to claim 28; the complex according to any of claims 14 to 20; the vesicle according to claim 21; the dendritic cell according to claim 27; the nucleic acid according to any of claims 23 to 25; or the virus according to claim 26; and optionally wherein if the patient does not produce KIR2DS2-expressing NK cells, administering to the patient the activated NK cell according to claim 22.
32. A method of treatment or prophylaxis of a patient for an NK cell regulated disease comprising determining if a patient produces a ligand for KIR2DS2; wherein if the patient produces a ligand for KIR2DS2, administering: the peptide according to any of claims 1 to 13; the immunogenic composition according to claim 28; the complex according to any of claims 14 to 20; the vesicle according to claim 21; the dendritic cell according to claim 27; the nucleic acid according to any of claims 23 to 25; or the virus according to claim 26; and optionally wherein if the patient does not produce a ligand for KIR2DS2, administering to the patient the activated NK cell according to claim 22.
33. A method of selecting a patient for treatment or prophylaxis with an agent arranged to activate NK cell mediated protection from a disease, wherein the agent is selected from: the peptide according to any of claims 1 to 13; the immunogenic composition according to claim 28; the complex according to any of claims 14 to 20; the vesicle according to claim 21; the dendritic cell according to claim 27; the nucleic acid according to any of claims 23 to 25; or the virus according to claim 26; the method comprising the step of determining if the patient produces KIR2DS2-expressing NK cells, wherein a patient producing KIR2DS2-expressing NK cells is selected for the treatment or prophylaxis with the agent; and optionally wherein a patient not producing KIR2DS2-expressing NK cells is not selected for the treatment or prophylaxis with the agent, and/or is selected for an alternative treatment.
34. A method of selecting a patient for treatment or prophylaxis with an agent arranged to activate NK cell mediated protection from a disease, wherein the agent is selected from: the peptide according to any of claims 1 to 13; the immunogenic composition according to claim 28; the complex according to any of claims 14 to 20; the vesicle according to claim 21; the dendritic cell according to claim 27; the nucleic acid according to any of claims 23 to 25; or the virus according to claim 26; the method comprising the step of determining if the patient produces a ligand for KIR2DS2, wherein a patient producing a ligand for KIR2DS2 is selected for the treatment or prophylaxis with the agent; and optionally wherein a patient not producing a ligand for KIR2DS2 is not selected for the treatment or prophylaxis with the agent, and/or is selected for an alternative treatment.
35. The method for selecting a patient according to claim 33 or 34 further comprises administering the agent, or the alternative treatment, to the selected patient.
36. The method for selecting a patient according to any of claims 33 to 35, wherein the alternative treatment comprises administering to the patient, the activated NK cell according to claim 18.
37. A method of producing activated NK cells comprising exposing an NK cell expressing KIR2DS2 receptor to a peptide according to any of claims 1 to 13.
38. A method for activating an NK cell mediated immune response of a patient for recognition of an antigen comprising administration of: the peptide according to any of claims 1 to 13; the immunogenic composition according to claim 28; the complex according to any of claims 14 to 20; the vesicle according to claim 21; the dendritic cell according to claim 27; the nucleic acid according to any of claims 23 to 25; or the virus according to claim 26.
39. The peptide according to any of claims 1 to 13; the immunogenic composition according to claim 28; the complex according to any of claims 14 to 20; the vesicle according to claim 21; the dendritic cell according to claim 27; the nucleic acid according to any of claims 23 to 25; or the virus according to claim 26; for use in, or as, a vaccine.
40. The peptide, immunogenic composition, the complex, the vesicle, the dendritic cell, the nucleic acid, the virus, the activated NK cell, the use, or the methods substantially described herein, with reference to the accompanying drawings.
Description
[0201]
[0202]
[0204]
[0205]
[0206]
[0207]
[0208]
[0209]
[0210]
[0211]
[0212]
[0213]
[0215]
[0216]
EXAMPLE 1KIR2DS1 AND ITS GROUP 1 HLA-C LIGANDS PROVIDE PROTECTION AGAINST Chronic Hepatitis C Virus (HCV) Infection
[0217] Table 1 shows a logistic regression analysis of the outcome of HCV infection and its association with KIR and HLA in 272 individuals exposed to HCV. 180 individuals had chronic infection and 92 cleared infection. An odds ratio (OR)>1 indicates protection against chronic HCV infection. (HLA-C*0102 is one of the group 1 HLA-C alleles).
TABLE-US-00001 TABLE 1 KIR2DS1 and its group 1 HLA-C ligands provide protection against chronic hepatitis C virus (HCV) infection. P OR 95% CI KIR2DL3:HLA-C1C1 0.006 2.56 1.31-5.02 KIR2DS3 0.027 0.50 0.28-0.92 KIR2DS2:group 1 HLA-C 0.033 1.83 1.05-3.19 KIR3DS1:HLA-Bw4 0.076 1.83 0.94-3.55 KIR2DS1:HLA-C2 0.176 0.60 0.29-1.25
EXAMPLE 2THE PEPTIDE LNPSVAATL (SEQ ID NO: 5) BINDS HLA-CW*0102
[0218] With reference to
EXAMPLE 3LNPSVAATL (SEQ ID NO: 5) IS RECOGNIZED BY KIR2DS2-POSITIVE NK CELLS AND LEADS TO NK CELL ACTIVATION (CD107A DEGRANULATION), AND KILLING OF TARGET CELLS EXPRESSING HLA-CW*0102
[0219] With reference to
EXAMPLE 4KIR2DS2-POSITIVE NK CELL CLONES KILL TARGET CELLS EXPRESSING HLA-CW*0102 AND THE LNPSVAATL (SEQ ID NO: 5) PEPTIDE
[0222] With reference to
EXAMPLE 5KIR2DS2 BINDS TO HLA-C*0102 AND THE LNPSVAATL (SEQ ID NO: 5) PEPTIDE
[0223] With reference to
EXAMPLE 6KIR2DS2 RECOGNISES PEPTIDES WITH XXXXXAAL (SEQ ID NO: 6) AND XXXXXATL (SEQ ID NO: 7) MOTIFS
[0224] With reference to
EXAMPLE 7LNPSVAATL (SEQ ID NO: 5) ACTIVATES NK CELLS EXPRESSING KIR2DS2
[0225] With reference to
EXAMPLE 8KIR2DS2 IS ACTIVATED BY THE PEPTIDE GAVPDLAWL (SEQ ID NO: 8) AND GAVPDLATL (SEQ ID NO: 9)
[0226] With reference to
EXAMPLE 9
[0227]
EXAMPLE 10: A CONSTRUCT IN THE SEQUENCE HLA-C*0102-T2A-E19/K-LNPSVAATL CAN BE USED TO ACTIVATE NK CELLS
[0228] With reference to
EXAMPLE 11: PEPTIDES IVDLMCHATF (SEQ ID NO: 1), VIDAMCHATL (SEQ ID NO: 2), AANVMAASL (SEQ ID NO: 3), AND FLSDVPVATL (SEQ ID NO: 4) CAN BIND HLA-C*0102
[0229] With reference to
EXAMPLE 12 KIR2DS2 BINDS TO HLA-C*0102 AND THE EXAMPLE 11KIR2DS2 BINDS TO HLA-C*0102 AND THE PEPTIDES IVDLMCHATF (SEQ ID NO: 1), VIDAMCHATL (SEQ ID NO: 2), AANVMAASL (SEQ ID NO: 3), AND FLSDVPVATL (SEQ ID NO: 4)
[0230] With reference to
EXAMPLE 13IVDLMCHATF (SEQ ID NO: 1) ACTIVATES NK CELLS EXPRESSING KIR2DS2
[0231] With reference to
REFERENCES
[0232] 1. Khakoo S I, et al. HLA and NK cell inhibitory receptor genes in resolving hepatitis C virus infection. Science. 2004; 305(5685):872-4. [0233] 2. Martin M P, et al. Epistatic interaction between KIR3DS1 and HLA-B delays the progression to AIDS. Nat Genet. 2002; 31(4):429-34. [0234] 3. Deshpande A, Wheeler C M, Hunt W C, Peyton C L, White P S, Valdez Y E, Nolan J P. Variation in HLA class I antigen-processing genes and susceptibility to human papillomavirus type 16-associated cervical cancer. J Infect Dis. 2008; 197(3): 371-81. [0235] 4. Carrington M, et al. Hierarchy of resistance to cervical neoplasia mediated by combinations of killer immunoglobulin-like receptor and human leukocyte antigen loci. J Exp Med. 2005; 201(7): 1069-75. [0236] 5. Hirayasu K, et al. Significant Association of KIR2DL3-HLA-C1 Combination with Cerebral Malaria and Implications for Co-evolution of KIR and HLA. PLoS Pathog. 2012; 8(3):e1002565. [0237] 6. Lopez-Vazquez A, et al. Protective Effect of the HLA-Bw4I80 Epitope and the Killer Cell Immunoglobulin-Like Receptor 3DS1 Gene against the Development of Hepatocellular Carcinoma in Patients with Hepatitis C Virus Infection. J Infect Dis.
[0238] 2005; 192(1):162-5. [0239] 7. Pan N, et al. KIR and HLA loci are associated with hepatocellular carcinoma development in patients with hepatitis B virus infection: a case-control study. PLoS ONE. 2011; 6(10):e25682. [0240] 8. Hiby S E, et al. Maternal activating KIRs protect against human reproductive failure mediated by fetal HLA-C2. J Clin Invest. 2010; 120(11):4102-10. [0241] 9. Marcus A, Raulet D H. Evidence for natural killer cell memory. Curr Biol. 2013; 23 (17):R817-20. [0242] 10. Sun J C, Beilke J N, Lanier L L. Adaptive immune features of natural killer cells. Nature. 2009; 457(7229):557-61. [0243] 11. Paust S, von Andrian U H. Natural killer cell memory. Nature Immunology. 2011; 131(6):500-8. [0244] 12. Beziat V, et al. CMV drives clonal expansion of NKG2C+ NK cells expressing self-specific KIRs in chronic hepatitis patients. Eur J Immunol. 2012; 42(2):447-57. [0245] 13. Beziat V, et al. NK cell responses to cytomegalovirus infection lead to stable imprints in the human KIR repertoire and involve activating KIRs. Blood. 2013; 121(14):2678-88. [0246] 14. Bjorkstrom N K, et al. Rapid expansion and long-term persistence of elevated NK cell numbers in humans infected with hantavirus. J Exp Med. 2011; 208(1):13-21. [0247] 15. Petitdemange C, Becquart P, Wauquier N, Beziat V, Debre P, Leroy E M, Vieillard V. Unconventional repertoire profile is imprinted during acute chikungunya infection for natural killer cells polarization toward cytotoxicity. PLoS Pathog. 2011; 7(9):e1002268. [0248] 16. Alter G, Jost S, Rihn S, Reyor L L, Nolan B E, Ghebremichael M, Bosch R, Altfeld M, Lauer G M. Reduced frequencies of NKp30+NKp46+, CD161+ and NKG2D+NK cells in acute HCV infection may predict viral clearance. J Hepatol. 2010. [0249] 17. Alter G, Rihn S, Walter K, Nolting A, Martin M, Rosenberg E S, Miller J S, Carrington M, Altfeld M. HLA class I subtype-dependent expansion of KIR3DS1+ and KIR3DL1+NK cells during acute human immunodeficiency virus type 1 infection. J Vivol. 2009; 83(13):6798-805. [0250] 18. Malnati M S, Peruzzi M, Parker K C, Biddison W E, Ciccone E, Moretta A, Long E O. Peptide specificity in the recognition of MHC class I by natural killer cell clones. Science. 1995; 267(5200):1016-8. [0251] 19. Fadda L, et al. Peptide antagonism as a mechanism for NK cell activation. Proc Natl Acad Sci USA. 2010; 107(22): 10160-5. [0252] 20. Cheent K S, Jamil K M, Cassidy S, Liu M, Mbiribindi B, Mulder A, Claas F H, Purbhoo M A, Khakoo S I. Synergistic inhibition of natural killer cells by the nonsignaling molecule CD94. Proc Natl Acad Sci USA. 2013; 110(42):16981-6. [0253] 21. Croft N P, Smith S A, Wong Y C, Tan C T, Dudek N L, Flesch I E, Lin L C, Tscharke D C, Purcell A W. Kinetics of antigen expression and epitope presentation during virus infection. PLoS Pathog. 2013; 9(1): e1003129. [0254] 22. Moesta A K, Parham P. Diverse functionality among human NK cell receptors for the C1 epitope of HLA-C: KIR2DS2, KIR2DL2, and KIR2DL3. Frontiers in immunology. 2012; 3:336. [0255] 23. Korner C, Altfeld M. Role of KIR3DS1 in human diseases. Frontiers in immunology. 2012; 3:326. [0256] 24. David G, Djaoud Z, Willem C, Legrand N, Rettman P, Gagne K, Cesbron A, Retiere C. Large spectrum of HLA-C recognition by killer Ig-like receptor (KIR)2DL2 and KIR2DL3 and restricted C1 specificty of KIR2DS2: dominant impact of KIR2DL2/KIR2DS2 on KIR2D NK cell repertoire formation. J Immunol. 2013; 191(9):4778-88. [0257] 25. Knapp S, et al. Consistent beneficial effects of killer cell immunoglobulin-like receptor 2DL3 and group 1 human leukocyte antigen-C following exposure to hepatitis C virus. Hepatology. 2010; 51(4):1168-75. (Khakoo Senior Author) [0258] 26. Rammensee H, Bachmann J, Emmerich N P, Bachor O A, Stevanovic S. SYFPEITHI: database for MHC ligands and peptide motifs. Immunogenetics. 1999; 50(3-4):213-9. [0259] 27. Gatfield J, et al. Cell lines transfected with the TAP inhibitor ICP47 allow testing peptide binding to a variety of HLA class I molecules. Int Immunol. 1998; 10(11):1665-72. [0260] 28. Seidel S A, et al. Microscale thermophoresis quantifies biomolecular interactions under previously challenging conditions. Methods. 2013; 59(3):301-15. [0261] 29. Wienken C J, Baaske P, Rothbauer U, Braun D, Duhr S. Protein-binding assays in biological liquids using microscale thermophoresis. Nature communications. 2010; 1:100. [0262] 30. Suppiah V, et al. IL28B, HLA-C, and KIR variants additively predict response to therapy in chronic hepatitis C virus infection in a European Cohort: a cross-sectional study. PLoS Med. 2011; 8(9):e1001092. [0263] 31. Borhis G, Ahmed P S, Mbiribindi B, Naiyer M M, Davis D M, Purbhoo M A, Khakoo S I. A Peptide Antagonist Disrupts N K Cell Inhibitory Synapse Formation. J Immunol. 2013. [0264] 32. Stewart C A, et al. Recognition of peptide-MHC class I complexes by activating killer immunoglobulin-like receptors. Proc Natl Acad Sci USA. 2005; 102(37): 13224-9. [0265] 33. Harrison R J, Ettorre A, Little A M, Khakoo S I. Association of NKG2A with treatment for chronic hepatitis C virus infection. Clin Exp Immunol. 2010; 161(2):306-14. [0266] 34. Anton L C, Yewdell J W, Bennink J R. MHC class I-associated peptides produced from endogenous gene products with vastly different efficiencies. J Immunol. 1997; 158(6): 2535-42. [0267] 35. Liberatore C, Capanni M, Albi N, Volpi I, Urbani E, Ruggeri L, Mencarelli A, Grignani F, Velardi A. Natural killer cell-mediated lysis of autologous cells modified by gene therapy. J Exp Med. 1999; 189(12):1855-62. [0268] 36. Minskaia E, Ryan M D. Protein coexpression using FMDV 2A: effect of linker residues. BioMed research international. 2013; 2013:291730. [0269] 37. Tomasello E, et al. Gene structure, expression pattern, and biological activity of mouse killer cell activating receptor-associated protein (KARAP)/DAP-12. J Biol Chem. 1998; 273(51):34115-9. [0270] 38. Peng H, Jiang X, Chen Y, Sojka D K, Wei H, Gao X, Sun R, Yokoyama W M, Tian Z. Liver-resident NK cells confer adaptive immunity in skin-contact inflammation. J Clin Invest. 2013; 123(4): 1444-56.