Sizing of a Microfluidic Device for Confining a Sample
20180304258 · 2018-10-25
Inventors
Cpc classification
C12M23/58
CHEMISTRY; METALLURGY
B01L2200/0647
PERFORMING OPERATIONS; TRANSPORTING
C12M35/08
CHEMISTRY; METALLURGY
B01L3/502715
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502776
PERFORMING OPERATIONS; TRANSPORTING
International classification
B01L3/00
PERFORMING OPERATIONS; TRANSPORTING
C12M1/42
CHEMISTRY; METALLURGY
C12M3/06
CHEMISTRY; METALLURGY
Abstract
The present invention relates to a method for sizing a microfluidic device for confining a sample. The sample to be confined can include cells (biological sample) or microparticles suspended in a carrier fluid medium. The present invention also relates to a method for sizing a microfluidic device for confining an explant contained in a cell culture fluid medium.
Claims
1. A method of sizing a microfluidic device intended to confine an initial sample comprising at least one population of cells or microparticles in suspension in a carrier fluid medium, the microfluidic device including: an input zone adapted to receive the carrier fluid medium containing the sample, said input zone corresponding to a cylindrical input tank of diameter D.sub.in, a confinement zone in which at least one part of the sample is confined comprising a base of surface S.sub.ch and length L.sub.ch and a side wall of height H.sub.ch, said confinement zone communicating with said input zone via a first channel of length L.sub.in, height H.sub.in and width W.sub.in, and an output zone adapted to discharge said liquid including the sample, said output zone corresponding to a cylindrical output tank of diameter D.sub.out, said output zone communicating with said confinement zone via a second channel of length L.sub.out, height H.sub.out and width W.sub.out, said method being characterized in that it consists of sizing of said device as a function of the number of cells or microparticles to be confined, comprising the following steps: A. sizing of said confinement zone as a function of the preferred amount of cells or microparticles to be confined and of the preferred coverage rate of the base of said confinement zone by said cells or microparticles, so as to define the surface D.sub.ch and the height H.sub.ch characterizing the confinement zone; B. sizing of the first channel and the second channel comprising: b1) calculation of the sedimentation speed v.sub.sedi of a particle or a cell, b2) determination of the speed v.sub.ch of the carrier fluid medium in said confinement zone as a function of the sedimentation speed v.sub.sedi of a particle or a cell as per the equation (1):
2. The method according to claim 1, wherein the sizing step A of said confinement zone comprises: A1) determination of the surface S.sub.ch of the base of said confinement zone as per the Stokes formula (5):
N=V(6) with being the concentration of cells or neurons in said sample, V being the sample volume entered in said microfluidic device at an instant t, defined as per the equation (7):
V=Qt(7) with Q being the flow rate of the sample in said microfluidic device, A2) fastening by the user of said microfluidic device of the height H.sub.ch of the wall of height H.sub.ch, as a function of the amount of preferred volume in the confinement zone and associated manufacturing restrictions.
3. The method according to claim 1, wherein the confinement zone has a cylindrical geometry with a circular base of diameter D.sub.ch, such that L.sub.ch=D.sub.ch.
4. The method according to claim 1, wherein the sedimentation speed v.sub.sedi of a particle or a cell is calculated in sub-step b1) as per the Stokes equation (8):
5. The method according to claim 1, wherein the determination step b4) of the geometric parameters of said microfluidic device comprises the following sub-steps: b41) choice of seven geometric parameters of said microfluidic device among the eight geometric parameters D.sub.in, H.sub.in, W.sub.in, L.sub.in, D.sub.out, H.sub.out, L.sub.out and W.sub.out; and b42) calculation of the unknown remaining geometric parameter as a function of Z and of the speed v.sub.ch of the carrier fluid medium.
6. The method according to claim 5, wherein the unknown parameter is calculated in the sub-step b42) from the equation (2) hereinbelow, for a loss in regular charge and a laminar flow of the carrier fluid medium in said microfluidic device:
Q=.sub.chH.sub.chW.sub.ch(9) designates the gravitational acceleration, designates the dynamic viscosity of the carrier fluid medium, designates the density of the carrier fluid medium, L.sub.ch designates the width of the confinement zone, represents a friction coefficient, calculated for a low Reynolds number as per the equation (3):
7. The method according to claim 6, wherein the unknown parameter is L.sub.out which is calculated according to the equation (4):
8. The method according to claim 1, wherein the sample is a biological sample consisting of a population of cells selected from neurons and eukaryotic cells in suspension in a cellular culture medium, or in suspension in water, salt or non-salt, a solvent, a hydrogel or an organic scaffold or a polymer.
9. The method according to claim 1, wherein the sample is a non-biological sample consisting of a population of microparticles in suspension in water, salt or non-salt, a solvent, a hydrogel or an organic scaffold or a polymer, said microparticles being selected from metallic microparticles, or made of semi-conductive material, or polyethylene glycol (PEG).
10. The method according to claim 1, wherein said confinement zone is connected to at least one isolation chamber via at least one additional channel having a hydraulic resistance for passage, with no return, of the sample in said isolation chamber.
11. The method according to claim 10, wherein said isolation chamber is a confinement zone of an additional microfluidic device.
12. The method according to claim 10, wherein said isolation chamber comprises an additional sample.
13. Use of a microfluidic device such as sized according to claim 12, for studying the interaction between the initial sample in said confinement zone and the additional sample in said isolation chamber.
Description
[0094] Other advantages and particular features of the present invention will emerge from the following description given by way of non-limiting example and done in reference to the appended figures and corresponding examples:
[0095]
[0096]
[0097]
[0098]
[0099] Identical elements shown in
EXAMPLE 1
First Embodiment: Sizing of a Microfluidic Chip (Illustrated in FIGS. 1 and 2) in Light of its Use for the Depositing of Neurons
Device
[0100] A microfluidic device 10, sized in accordance with the method according to the invention (first embodiment) is used for the depositing of neurons.
[0101]
[0102] This microfluidic device 10 comprises an input zone 1 adapted to receive a liquid including the biological sample and an output zone 4 adapted to discharge this liquid. The input zone 1 and the output zone 4 correspond to the cylindrical tanks which have the same diameters and different heights (the height of the input zone 1 is less than the height of the output zone 4). In particular, the diameter D.sub.in of the tank, which corresponds to the input zone 1, is the same as the diameter D.sub.out of the tank which corresponds to the output zone 4. However, the input zone 1 and the output zone 4 can have different diameters. Also, the input zone 1 and/or the output zone 4 can also have forms other than the cylindrical form (for example square forms).
[0103] It should be noted that the dimensions (height and section) of the input zone 1 are selected relative to the biological sample introduced to the input zone 1: it is preferable for the dimensions of the input zone 1 to be such that it can store all the nutrients included in the cellular culture liquid and which are necessary for survival of neurons in the confinement zone (or depositing chamber) for a period ranging from 12 hours to 48 hours (but not limited to these periods), to conduct in vitro studies on these neurons.
[0104] The microfluidic device 10 of
[0105] Also, it should be noted that the dimensions (height and length) of the chamber 5 are determined as a function of the volume of liquid received by the input zone 1 to be confined in this chamber 5, and they can vary from a few micrometers to a few centimeters.
[0106] Also,
[0107] It should be noted that the flow of the liquid in the microfluidic device of
[0108] Also, in the example of
[0109] It has been noted that the presence of the first channel 2 upstream and of the second channel 3 downstream of the confinement zone (chamber 5) in the microfluidic device 10 of
Sample
[0110] The sample implemented in this example is a culture medium of neurons, which comprises: [0111] 5.10.sup.7 neurons/mL, in suspension in [0112] a cellular culture liquid medium, containing Neurobasal, b27, L-cysteine and Pen/Strep.
Sizing of the Microfluidic Chip of FIGS. 1 and 2 as a Function of the Sample
[0113] An example of confinement of a population of neurons in the depositing chamber 5 of the microfluidic device 10 of
[0114] In particular, the photograph of
[0115] As
[0116] As illustrated in
[0117] It should be noted that this adaptation of the dimensions of the first channel and of the second channel has been made given the losses of charge of equations (2) and (4) mentioned hereinabove, the concentration and the dimensions of the neurons and the dimensions of the input zone 1, of the output zone 4 and of the chamber 5.
[0118] In particular, the microfluidic chip 10 illustrated in
[0123] L.sub.out is calculated in accordance with the sizing method according to the invention, starting out from the equation (2).
[0124] In the present example, the parameters fixed at the outset were the parameters D.sub.in, H.sub.in, W.sub.in, L.sub.in, D.sub.out, H.sub.out, and W.sub.out.
[0125] But it is also possible to calculate another unknown parameter, different to L.sub.out, and fix the seven other remaining parameters.
[0126] The speed of the flow of the cellular culture liquid in the depositing chamber 5 is 41.Math.10.sup.5 m/s and this speed has been obtained by introduction of a volume of liquid of 20 L in the input zone 1.
[0127] It should be noted that in the microfluidic device of the publication by Taylor et al..sup.[1], there are no first channel and second channel connected to the Taylor confinement zone (culture chamber), as is the case in the microfluidic device 10 sized as per the present invention, and so on. In the Taylor device, it is not possible to confine the sample in the confinement zone by controlling the spatial distribution of the sample in this confinement zone.
[0128] The control of the speed of the flow of the liquid in the chamber 5 enables control of the spatial distribution of the biological sample in this chamber 5 during flow of the liquid.
Experimental Protocol
[0129] Growing cells requires a sterile medium to avoid any form of contamination. Because microfluidic chips are not sterile once they are assembled, they therefore need to be sterilized prior to use.
[0130] For this purpose, the microfluidic chip 10 used in this example for the depositing of neurons (and whereof the depositing chamber 5 is illustrated by
[0131] The surface of the depositing chamber can then be functionalized to promote the culture of cells.
[0132] Once the chip 10 is ready, a predefined volume of the sample (from 0.5 to 10 mL) is deposited in the charging zone (Input zone 1) to generate flow and begin the depositing of cells.
[0133] The flow can be stopped any time, either by removing the volume of liquid remaining in the input zone 1, or by adding an equivalent volume to the output zone (equalizing the hydrostatic pressure between the input and the output).
EXAMPLE 2
Second Embodiment: Sizing of a Microfluidic Chip (Illustrated in FIGS. 3 to 5) in Light of its Use for Depositing Explants
Device
[0134] A microfluidic device 10, sized in accordance with the method according to the invention (second embodiment), is used for depositing explants.
[0135]
[0136] As illustrated in
[0137] However, the input zone 1 and the output zone 4 can have different diameters and/or heights. Also, the input zone 1 and/or the output zone 4 can have forms other than cylindrical (for example square forms).
[0138] It should be noted that the dimensions (height and diameter) of the input zone 1 are selected relative to the dimensions of the explant (ganglion or hippocampus especially) received by this input zone 1, such that the biological sample can enter the microfluidic device 10 of
[0139] Also, as is the case for the input zone 1 of the microfluidic device 10 of
[0140] The microfluidic device 10 of
[0141] Also, this microfluidic device 10 comprises a first channel 2 and a second channel 3, which have heights less than those respectively of the input zone 1 and of the output zone 4. Also, as illustrated in
[0142] Also, the first channel 2 and the second channel 3 of the microfluidic device 10 of
[0143] It should be noted that the flow of the liquid in the microfluidic device of
[0144] Also, it should be noted that the output zone 4 can be adapted for allow aspiration of the liquid to boost the speed of the liquid in the microfluidic device 10. In particular, this aspiration of the liquid can be done by using a pipette, a nozzle or a suction capillary and the dimensions of the output zone 4 are adapted so that they correspond to the dimensions of the pipette, of the nozzle or of the suction capillary.
[0145] It should be noted that as is the case for the microfluidic device 10 of
[0146] Also, adaptation of the width and/or the height of the first channel 2 depends on the dimensions of the explant and in all cases they are preferably at least 1% larger than the dimensions of the biological sample in suspension so that the biological sample can pass through the first channel 2 without damage.
[0147] Also, with respect to the length of the first channel 2, it is preferable for this to be as sort as possible, so as to let the explant be introduced to the first channel 2, and prevent accidents along the way (unwanted adhesion of the explant to the walls of the first channel 2 before arriving at the confinement zone).
[0148] In the example of
Samples
[0149] One of the samples implemented in this example (case of
[0152] The other sample implemented in this example (case of
Sizing of the Microfluidic Chip of FIGS. 4 and 5 as a Function of the Size of the Explant
[0155]
[0158] As is evident in
[0159] In the example of
LIST OF REFERENCES
[0160] [1] Taylor, A. M. and al. A microfluidic culture platform for CNS axonal injury, regeneration and transport, Nature Methods, Vol. 2, No. 8, August 2005, pages 599-605. [0161] [2] Park, J., Koito, H., J. & Han, A. Microfluidic compartmentalized co-culture platform for CNS axon myelination research Biomed. Microdevices 11, 1145-1153 (2009). [0162] [3] Shi, P., Nedelec, S., Wichterle, H. & Kam, L. C., Combined microfluidics/protein patterning platform for pharmacological interrogation of axon pathfinding Lab Chip 10, 1005-10 (2010). [0163] [4] Peyrin, J. M. et al., Axon diodes for the reconstruction of oriented neuronal network in microfluidic chambers Lab Chip 12, 3663 (2011). [0164] [5] Barbati, A. C., Fang, C., Banker, G. & Kirby, B. J., Culture of primary rat hippocampal neurons: design, analysis, and optimization of a microfluidic device for cell seeding, coherent growth, and solute delivery. Biomed. Microdevices 15, 97-108 (2013). [0165] [6] Dinh, N. D., et al., Microfluidic construction of minimalistic neuronal co-cultures Lab Chip 13, 1402-12 (2013). [0166] [7] Pautot, S., Wyart, C. & Isacoff, E. Y., Colloid-guided assembly of oriented 3D neuronal networks Nat Meth 5, 735-740 (2008). [0167] [8] Huang, Z. et al., Assembly of functional Three-Dimensional Neuronal Networks on a Microchip. Small (2014).doi:10.1002/smll.201400513. [0168] [9] Bang, S., Na, S., Jang, J. M., Kim, J. & Jeon, N. L. Engineering-Aligned 3D Neural Circuit in Microfluidic Device. Adv. Healthc. Mater. 5, 159-166 (2016). [0169] [10] Kato-Negishi, M., Morimoto, Y., Onoe, H. & Takeushi, S.
[0170] millimeter-sized neural building blocks for 3D heterogeneous neural network assembly Adv. Healthc. Mater. 2, 1564-70 (2013).