ANTIGEN RECEPTORS AND USES THEREOF
20180282390 ยท 2018-10-04
Inventors
- Ralf Holger Voss (Ingelheim, DE)
- Ugur Sahin (Mainz, DE)
- Matthias THEOBALD (Mainz, DE)
- Petra Simon (Mainz, DE)
- Matthias BIRTEL (Mainz, DE)
Cpc classification
A61K39/4611
HUMAN NECESSITIES
C07K2319/33
CHEMISTRY; METALLURGY
A61P43/00
HUMAN NECESSITIES
C07K16/28
CHEMISTRY; METALLURGY
A61K2239/59
HUMAN NECESSITIES
A61P35/00
HUMAN NECESSITIES
International classification
Abstract
The present invention generally embraces the treatment of diseases by targeting cells expressing an antigen on the cell surface. In particular the invention relates to recombinant antigen receptors and uses thereof. T cells engineered to express such antigen receptors are useful in the treatment of diseases characterized by expression of one or more antigens bound by the antigen receptors.
Claims
1. An antigen receptor, which receptor comprises a first peptide chain and a second peptide chain, wherein the first peptide chain comprises at least a first and a second domain, and an immunoreceptor signal transmission domain; the second peptide chain comprises at least a first and a second domain, and an immunoreceptor signal transmission domain; wherein the first domain from the first peptide chain forms together with one of the domains from the second peptide chain a first antigen binding site, and wherein the second domain from the first peptide chain forms together with the other domain from the second peptide chain a second antigen binding site.
2. The receptor of claim 1, wherein the immunoreceptor signal transmission domain comprises a constant or invariant region of a T cell receptor chain or a constant or invariant region of an immune cell Fc receptor chain or a portion of the constant or invariant region.
3. The receptor of claim 1, wherein the first and/or second peptide chains further comprise a linker between the first and second domains and/or between the first and second domains and the immunoreceptor signal transmission domain.
4. The receptor of claim 3, wherein the linker is an arbitrary amino acid sequence.
5. The receptor of claim 1, wherein the first and/or second domains each comprise a variable region of an immunoglobulin chain or a variable region of a T cell receptor chain or a portion of the variable region.
6. The receptor of claim 1, wherein (i) the first peptide chain comprises a constant region of a T cell receptor alpha chain or a portion thereof and the second peptide chain comprises a constant region of a T cell receptor beta chain or a portion thereof, or (ii) the first peptide chain comprises a constant region of a T cell receptor beta chain or a portion thereof and the second peptide chain comprises a constant region of a T cell receptor alpha chain or a portion thereof
7. The receptor of claim 1, wherein the immunoreceptor signal transmission domain is of human origin.
8. The receptor of claim 1, wherein the first domain from the first peptide chain comprises a variable region of a heavy chain of an immunoglobulin with a specificity for an antigen or a portion thereof and the domain from the second peptide chain forming an antigen binding site with the first domain from the first peptide chain comprises a variable region of a light chain of an immunoglobulin with a specificity for the antigen or a portion thereof.
9. The receptor of claim 1, wherein the second domain from the first peptide chain comprises a variable region of a heavy chain of an immunoglobulin with a specificity for an antigen or a portion thereof and the domain from the second peptide chain forming an antigen binding site with the second domain from the first peptide chain comprises a variable region of a light chain of an immunoglobulin with a specificity for the antigen or a portion thereof.
10. The receptor of claim 1, wherein the first and second antigen binding sites bind to the same antigen or different antigens.
11. The receptor of claim 1, wherein the first and second antigen binding sites bind to different epitopes on the same antigen.
12. The receptor of claim 1, wherein the antigen is a disease-specific antigen, preferably a tumor antigen.
13. The receptor of claim 12, wherein the antigen is expressed on the surface of a cell.
14. The receptor of claim 1, wherein the first and the second domains from the first peptide chain each comprise a variable region of a heavy chain of an immunoglobulin or a portion thereof and the first and the second domains from the second peptide chain each comprise a variable region of a light chain of an immunoglobulin or a portion thereof.
15. The receptor of claim 1, wherein the N-terminal domain from the first peptide chain forms together with the N-terminal domain from the second peptide chain an antigen binding site; and the C-terminal domain from the first peptide chain forms together with the C-terminal domain from the second peptide chain an antigen binding site.
16. A peptide chain comprising a first and a second domain which each comprise a variable region of a heavy chain of an immunoglobulin or a portion thereof or each comprise a variable region of a light chain of an immunoglobulin or a portion thereof and wherein the peptide chain further comprises an immunoreceptor signal transmission domain.
17. An antigen receptor, which receptor comprises a first peptide chain and a second peptide chain, wherein the first peptide chain comprises at least four domains, and an immunoreceptor signal transmission domain; the second peptide chain comprises an immunoreceptor signal transmission domain; wherein two of the domains from the first peptide chain form a first antigen binding site, and wherein the other two domains from the first peptide chain form a second antigen binding site.
18. The receptor of claim 17, wherein the immunoreceptor signal transmission domain comprises a constant or invariant region of a T cell receptor chain or a constant or invariant region of an immune cell Fc receptor chain or a portion of the constant or invariant region.
19. The receptor of claim 17, wherein the first peptide chain further comprises a linker between at least two of the four domains and/or between the four domains and the immunoreceptor signal transmission domain.
20. The receptor of claim 19, wherein the linker is an arbitrary amino acid sequence.
21. The receptor of claim 17, wherein the four domains each comprise a variable region of an immunoglobulin chain or a variable region of a T cell receptor chain or a portion of the variable region.
22. The receptor of claim 17, wherein (i) the first peptide chain comprises a constant region of a T cell receptor alpha chain or a portion thereof and the second peptide chain comprises a constant region of a T cell receptor beta chain or a portion thereof, or (ii) the first peptide chain comprises a constant region of a T cell receptor beta chain or a portion thereof and the second peptide chain comprises a constant region of a T cell receptor alpha chain or a portion thereof.
23. The receptor of claim 17, wherein the immunoreceptor signal transmission domain is of human origin.
24. The receptor of claim 17, wherein one of the domains forming the first antigen binding site comprises a variable region of a heavy chain of an immunoglobulin with a specificity for an antigen or a portion thereof and the other domain forming the first antigen binding site comprises a variable region of a light chain of an immunoglobulin with a specificity for the antigen or a portion thereof.
25. The receptor of claim 17, wherein one of the domains forming the second antigen binding site comprises a variable region of a heavy chain of an immunoglobulin with a specificity for an antigen or a portion thereof and the other domain forming the second antigen binding site comprises a variable region of a light chain of an immunoglobulin with a specificity for the antigen or a portion thereof.
26. The receptor of claim 17, wherein the first and second antigen binding sites bind to the same antigen or different antigens.
27. The receptor of claim 17, wherein the first and second antigen binding sites bind to different epitopes on the same antigen.
28. The receptor of claim 17, wherein the antigen is a disease-specific antigen, preferably a tumor antigen.
29. The receptor of claim 28, wherein the antigen is expressed on the surface of a cell.
30. The receptor of claim 17, wherein the two N-terminal domains of the four domains form together an antigen binding site; and the two C-terminal domains of the four domains form together an antigen binding site.
31. The receptor of claim 17, wherein one of the two N-terminal domains of the four domains comprises a variable region of a heavy chain of an immunoglobulin or a portion thereof and the other of the two N-terminal domains of the four domains comprises a variable region of a light chain of an immunoglobulin or a portion thereof; and one of the two C-terminal domains of the four domains comprises a variable region of a heavy chain of an immunoglobulin or a portion thereof and the other of the two C-terminal domains of the four domains comprises a variable region of a light chain of an immunoglobulin or a portion thereof.
32. A peptide chain which comprises at least four domains, and an immunoreceptor signal transmission domain, wherein two of the domains from the peptide chain form a first antigen binding site, and the other two domains from the peptide chain form a second antigen binding site.
33. A recombinant cell expressing the first peptide chain, the second peptide chain or both the first and second peptide chains defined in claim 1.
34. A recombinant cell expressing the first peptide chain or both the first and second peptide chains defined in claim 17.
35. A method for producing a cell expressing an antigen receptor which receptor comprises a first peptide chain and a second peptide chain, the method comprising: (a) providing a cell; (b) providing a first genetic construct encoding the first peptide chain comprising at least a first and a second domain, and an immunoreceptor signal transmission domain; (c) providing a second genetic construct encoding the second peptide chain comprising at least a first and a second domain and an immunoreceptor signal transmission domain; (d) introducing the first and second genetic constructs into the cell; and (e) allowing the constructs to be expressed in the cell; wherein the first domain from the first peptide chain is able to form together with one of the domains from the second peptide chain a first antigen binding site, and wherein the second domain from the first peptide chain is able to form together with the other domain from the second peptide chain a second antigen binding site.
36. A method for producing a cell expressing an antigen receptor which receptor comprises a first peptide chain and a second peptide chain, the method comprising: (a) providing a cell; (b) providing a first genetic construct encoding the first peptide chain comprising at least four domains, and an immunoreceptor signal transmission domain; (c) providing a second genetic construct encoding the second peptide chain comprising an immunoreceptor signal transmission domain; (d) introducing the first and second genetic constructs into the cell; and (e) allowing the constructs to be expressed in the cell; wherein two of the domains from the first peptide chain are able to form a first antigen binding site, and wherein the other two domains from the first peptide chain are able to form a second antigen binding site.
37. The method of claim 35, wherein expression of the antigen receptor is at the cell surface.
38. The method of claim 35, wherein the first peptide chain and the second peptide chain are provided on a single genetic construct.
39. The method of claim 35, wherein the cell is a human cell.
40. The method of claim 35, wherein the cell is a T cell.
41. A recombinant cell produced by the method of claim 35.
42. A nucleic acid encoding the first peptide chain, the second peptide chain or both the first and second peptide chains defined in claim 1.
43. A nucleic acid encoding the first peptide chain or both the first and second peptide chains defined in claim 17.
44. The nucleic acid of claim 42, wherein the nucleic acid is DNA or RNA.
45. A pharmaceutical composition comprising the antigen receptor of claim 1, and a pharmaceutically acceptable carrier.
46. The pharmaceutical composition of claim 45 for use as a medicament.
47. The pharmaceutical composition of claim 45 for use in the treatment of a disease characterized by expression of at least one antigen which is bound by the antigen receptor.
48. The pharmaceutical composition of claim 47, wherein the antigen is a tumor antigen.
49. The pharmaceutical composition of claim 47, wherein the disease is cancer.
50. A method for the treatment of a disease comprising administering to a subject a therapeutically effective amount of the pharmaceutical composition of claim 45, wherein the disease is characterized by expression of at least one antigen which is bound by the antigen receptor.
51. The method of claim 50, wherein the antigen is a tumor antigen.
52. The method of claim 50, wherein the disease is cancer.
Description
FIGURES
[0300]
[0301]
[0302]
[0303] Left: a second generation CAR consisting of an antigen-specific scFv fragment, a IgG1-derived spacer domain, a CD28 costimulatory and a CD3? signaling domain (Classical single chain CAR); middle: a novel CAR format based on the linkage of the scFv with the constant domain of the murine TCR? chain and coexpression of the constant domain of the murine TCR? chain (monovalent non-combinatory antigen receptor); right: a murine TCR composed of TCR ?/? chains (mu, murine). The heterodimer CD3?? and the homodimer CD3?? is recruited by the C?-domain while CD3?? is recruited by the C?-domain.
[0304]
[0305]
[0306]
[0307]
[0308]
[0309]
[0310]
[0311]
EXAMPLES
[0312] The techniques and methods used herein are described herein or carried out in a manner known per se and as described, for example, in Sambrook et al., Molecular Cloning: A Laboratory Manual, 2.sup.nd Edition (1989) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. All methods including the use of kits and reagents are carried out according to the manufacturers' information unless specifically indicated.
Example 1
Expression of Antigen Receptors in T Cells
[0313] The expression of various antigen receptor constructs was assessed one day after electroporation into CD8+ T cells using a Cl6 scFv idiotype-specific antibody. The constructs or combination of constructs tested for expression were (i) the constant domain of the murine T cell receptor alpha chain alone (mCa); (ii) VH-VL-mC? alone (scFv-mC?); (iii) VH-VL-CH2-CH3-CD28-CD3? (Classical scCAR); (iv) mC? and VH-VL-mC? (monovalent non-combinatory AR); (v) VH-VL-mC? and VH-VL-mC? (bivalent non-combinatory AR); (vi) VL-VH-mC? and VH-VL-mC? (Intra/Inter-combinatory AR); (vii) mC? and VH-VL-VH-VL-mC? (Tandem AR); (viii) VH-hC? and VL-hC? (monovalent combinatory AR); (ix) VH-(GGGGS)3-VH-hC? and VL-(GGGGS)3-VL-hC? (Inter-combinatory AR 3GS); and (x) VH-(GGGGS)3-VH-mC? and VL-(GGGGS)3-VL-mC? (Inter-combinatory AR Mu 3GS) (m or Mu indicates murine origin and h indicates human origin of the constant domain). These different antigen receptor constructs are schematically presented in
[0314] As shown in
Example 2
IFN-? Secretion Assay
[0315] On day 1 of the experiment, fresh peripheral blood mononuclear cells (PBMCs) were isolated from a buffy coat of one healthy donor. From ? of PBMCs, CD14+ cells were isolated using MACS sort. MACS flow through and residual PBMCs were then MACS sorted for CD8+ T cells. CD14+ cells were differentiated towards immature dendritic cells (iDCs) by administration of IL-4 & GM-CSF (1000 U/ml) on day 1, 3, 6. CD8+ T cells were transferred on OKT3 coated 6 well plates. On day 3, T cells were transferred to new 6 well plates. On day 7, iDCs were electroporated with irrelevant and Cl6 IVT RNA. OKT3 activated T cells were subsequently electroporated with controls, or antigen receptor constructs as set forth in the individual figures and as described in Example 1. For quality assurance, antigen receptor surface expression on T cells was analyzed using a Cl6 antigen receptor idiotype-specific antibody labeled with Dylight 650 on day 8. The electroporated T cells and antigen electroporated iDCs were subsequently co-cultured in a 96 well plate for 20 h at an E:T ratio of 10:1 in duplicates. On day 9, culture supernatants were taken and analyzed for the amount of secreted IFN-? in a sandwich ELISA using the IFN-? Ready Set Go! kit from eBioscience (#88-7316-88). Absorbance was detected using a Tecan Sunrise ELISA reader.
[0316] As depicted in
[0317] Importantly, a truncation of the N-terminal variable domain in the combinatory antigen receptor structure showed a strong reduction in effector function. This observation clearly proved that bivalent antigen-binding supports T cell activation. The prominent increase in function between the monovalent combinatory AR and the bivalent combinatory AR is also a strong indication that, besides the improvement of chain-pairing mediated by the inter-chain variable domains, the incidence of antigen binding itself across the two chains further stabilizes receptor chain pairing and hence, improves incorporation into the endogenous CD3 complex and subsequent T cell activation/function. From double chain T cell receptors it is well-known that heterodimerisation of the chains is an essential prerequisite for efficient incorporation into the CD3 complex.
[0318] The integration of murine residues into the combinatory AR structure was able to further increase activation, which is reasoned to be due to the known stronger interaction of murine TCR constant C?/?-domains as compared to human ones. Thus, improved heterodimerisation of the peptide chains of the antigen receptor, either through inter-chain antigen binding to the variable domains or through dimerization of the T cell receptor constant domains on the individual chains, improved integration of the antigen receptor into the endogenous CD3 complex, and thus, improved T cell function. These results were highly reproducible with a different T cell donor (see
[0319] Notably, the classical scCAR demonstrated in this experiment a non-specific background of IFN-? production against Cl6 negative iDCs. This result is also reproducible and is in line with data published by Long et al. ((2015) Nat. Med., (21) 581-590) discussing tonic signaling by the classical scCAR-CD28-CD3? fusion format. Long et al. observed an antigen-independent activation for several classical scCARs of varying antigen specificities. It is assumed that non-specific background activation of classical scCAR positive T cells is not a T cell donor specific effect.
[0320] Further, and as depicted in
Example 3
Cytotoxicity Assay
[0321] On day 1 of the experiment, fresh PBMCs were isolated from two buffy coats from two healthy donors. PBMCs were MACS sorted for CD8+ T cells. CD8+ T cells were transferred on OKT3 coated 6 well plates. They were cultured in medium containing 50 U/ml IL-2. On day 3, T cells were transferred on new 6 well plates and culture medium was changed. On day 7, the ovarian carcinoma cell line Sk-Ov-3 was RNA-electroporated with varying amounts of Cl6 RNA and 10 ?g of luciferase RNA. OKT3 activated T cells were electroporated with an irrelevant classical scCAR, a relevant Cl6-specific classical scCAR, a monovalent non-combinatory antigen receptor and a tandem antigen receptor as well as an inter-combinatory antigen receptor of the invention as indicated in
[0322] The Sk-Ov-3 data impressively document that the bivalent antigen receptors (inter-combinatory AR and tandem AR) of the invention showed a marked improvement as compared to the classical scCAR and monovalent non-combinatory AR. Compared to all other antigen receptor constructs, the classical scCAR design showed the best lysis of about 77% against Cl6 electroporated Sk-Ov-3 cells. However, it should be mentioned that 10 ?g of antigen RNA is a non-physiological condition and does not accurately reflect the in vivo situation. At low antigen doses, the monovalent non-combinatory AR was not able to lyse tumor cells in a satisfactory fashion (9.2%). In contrast, the inter-combinatory AR (3GS) still showed good specific lysis (41.3%) compared to the classical scCAR design (48.1%) and conclusively, was less dependent on antigen density for substantial cytotoxic effector function.
Example 4
Proliferation Assay
[0323] On day 1 of the experiment, fresh PBMCs were isolated from a buffy coat of a healthy donor. From ? of PBMCs, CD14+ cells were isolated using MACS sort, and residual PBMCs were frozen. CD14+ cells were differentiated to iDCs by administration of IL-4 & GM-CSF (1000 U/ml) on day 1, 3, 6. On day 7 iDCs were electroporated with irrelevant and Cl6 IVT-RNA. The frozen PBMCs were thawed on the same day and MACS sorted for CD4+ and CD8+ cells. Without any prior activation (OKT3), na?ve T cells, 6 and 7?10.sup.6 cells, respectively, were subsequently electroporated with controls, classical, monovalent and bivalent antigen receptor constructs as indicated in
[0324] For quality assurance, antigen receptor and 41BBL+CD80 expression on T cells was analyzed by FACS staining on day 8. T cells were subsequently labeled with the proliferation marker CFSE. The electroporated T cells and iDCs as well as the ovarian carcinoma cell line OV-90 were subsequently co-cultured in a 96 well plate for 5 days at an E:T ratio of 10:1 in duplicates. On day 5, cultured cells were stained in the 96 well plates with CD4 or CD8 antibodies labeled with APC-Cy7. Proliferation of T cells was detected via FACS by the reduction of CFSE-signal due to dilution in proliferating daughter cells. With minor adjustments, daughter population sizes were assessed using the in Flowjo implemented proliferation tool. The sum of proliferating cells is depicted as daughter generations.
[0325] Background proliferation of T cells was assessed for cells cultured with either the Cl6 negative cell line Sk-Ov-3 and Cl6 negative iDCs. Independently of the electroporated antigen receptor construct, neither CD4+ nor CD8+ T cells proliferated against Cl6 negative cells. Upon co-stimulation in cis, only classical scCAR engineered T cells proliferated non-specifically against Cl6 negative iDCs and Sk-Ov-3 (Sk-Ov-3 data not shown). CD4+ T cells proliferated overall less efficiently against Cl6+ cells compared to CD8+ T cells (see
[0326] The results for T cells co-cultured with iDCs proved the overall good function of the inter-combinatory antigen receptor. Of CD4+ T cells without co-stimulation in cis, the inter-combinatory antigen receptor showed superior proliferation and even outperformed the classical scCAR design. This effect was not due to a reduced surface expression of the classical scCAR, as analyzed by CAR idiotype staining. For CD8+ T cells, the inter-combinatory antigen receptor design demonstrated a remarkable proliferation against Cl6 loaded iDCs (70%). Co-stimulation of the T cells in cis could further enhance T cell responses.
[0327] Interestingly no proliferation of cells could be observed against the Cl6+ ovarian carcinoma cell line OV-90 (data not shown). This was reasoned to be due to a lack of co-stimulatory molecules on the surface of the tumor cells. In order to compensate this lack of co-stimulus, Ov-90 cells were electroporated with CD80 and 41BBL RNA. In this case, proliferation of CD4+ and CD8+ T cells could be detected (see
[0328] The data clearly indicate that the bivalent antigen receptor construct (Inter-combinatory AR) is capable of proliferating against Cl6+ tumor cell lines, when co-stimulated. In general, the inter-combinatory AR is by far better than the monovalent non-combinatory AR in proliferating against iDCs loaded with the cognate target antigen. The classical scCAR is prone to non-specific responses when co-stimulated in cis against Cl6 negative iDCs, indicating a higher susceptibility for antigen-independent T cell signaling.
Example 5
Antigen-Titrated IFN?-Secretion Assay
[0329] On day 1 of the experiment, fresh peripheral blood mononuclear cells (PBMCs) were isolated from a buffy coat of one healthy donor. From % of PBMCs, CD14+ cells were isolated using MACS sort. MACS flow through and residual PBMCs were then MACS sorted for CD8+ T cells. CD14+ cells were differentiated towards immature dendritic cells (iDCs) by administration of IL-4 & GM-CSF (1000 U/ml) on day 1, 3, 6. CD8+ T cells were transferred on OKT3 coated 6 well plates. On day 3, T cells were transferred to new 6 well plates. On day 7, iDCs were electroporated with irrelevant and Cl6 IVT RNA dose-dependently. OKT3 activated T cells were subsequently electroporated with controls, or antigen receptor constructs as set forth in the individual figures and as described in Example 1. For quality assurance, antigen receptor surface expression on T cells was analyzed using a Cl6 antigen receptor idiotype-specific antibody labeled with Dylight 650 on day 8. The electroporated T cells and antigen electroporated iDCs were subsequently co-cultured in a 96 well plate for 20 h at an E:T ratio of 10:1 in duplicates. On day 9, culture supernatants were taken and analyzed for the amount of secreted IFN-? in a sandwich ELISA using the IFN-? Ready Set Go! kit from eBioscience (#88-7316-88). Absorbance was detected using a Tecan Sunrise ELISA reader. The result are shown in
[0330] Bivalent antigen receptors were assessed for the amount of cytokine secretion dependent on the hypothesized propensity to pair in a combinatory fashion which favours stable expression and subsequently, T cell signaling: We speculated to observe exclusive combinatory V-domain inter-chain pairing for the inter-combinatory AR while the inter/intra-combinatory AR may coexist in a proportion of less favourable intra-chain pairing. At high antigen density (1 ?g Cl6) the classical CAR elicited the highest amount of IFN?-secretion followed, as expected, by inter- and inter/intra-combinatory AR. Bivalent non-combinatory AR was less functional than the references of a monovalent combinatory AR and a monovalent non-combinatory AR. Bivalent non-combinatory AR rely on chain pairing merely between the invariant human C-domains, while the monovalent combinatory AR accomplishes better chain pairing between the human C- and mouse V-domains. In line with the expected results, also the monovalent non-combinatory AR is more functional than the bivalent non-combinatory AR because inter-chain pairing, despite the fact that it is also restricted to C-domains here, is promoted by mouse C-domains instead of weaker human ones. This is also true for any antigen dosis applied in this assay.
[0331] Notably, when lowering the antigen densities (0.1 ?g, 0.01 ?g of Cl6 RNA-electroporated cells) the inter-combinatory AR became increasingly more reactive towards iDCs pulsed with relevant RNA when compared with the classical CAR. This is in line with a similar trend shown in a antigen dose-dependent cytotoxicity assay (
[0332] The classical CAR was also compared with a novel combinatory classical AR in an antigen-titrated IFN?-secretion assay (