METHODS FOR BIOANALYSIS OF 6-DIAZO-5-OXO-L-NORLEUCINE (DON) AND OTHER GLUTAMINE ANTAGONISTS
20180267067 ยท 2018-09-20
Assignee
Inventors
Cpc classification
C07D207/22
CHEMISTRY; METALLURGY
G01N33/94
PHYSICS
C07C311/16
CHEMISTRY; METALLURGY
International classification
Abstract
The presently disclosed subject matter provides methods for quantifying levels of glutamine antagonists, such as 6-diazo-5-oxo-L-norleucine (DON), including such glutamine antagonists resulting from in vivo conversion of ester prodrugs of such glutamine antagonists, in a biological sample.
Claims
1. A method for quantifying the amount of a glutamine antagonist in a biological sample, the method comprising: obtaining a biological sample comprising a glutamine antagonist; reacting the glutamine antagonist in the biological sample with an acidified alcohol to produce a derivatized glutamine antagonist; performing mass spectrometry (MS) to determine the amount of derivatized glutamine antagonist produced by the reaction; and comparing the amount of derivatized glutamine antagonist produced by the reaction to a standard curve to determine the amount of the glutamine antagonist in the biological sample.
2. The method of claim 1, wherein the acidified alcohol is selected from the group consisting of acidified butanol and 3N hydrochloric acid (HCl).
3. (canceled)
4. The method of claim 1, wherein the glutamine antagonist is selected from the group consisting of acivicin (L-(alpha S,5S)-alpha-amino-3-chloro-4,5-dihydro-5-isoxazoleacetic acid), 6-diazo-5-oxo-norleucine (DON), and 5-diazo-4-oxo-L-norvaline (L-DONV), and aza-serine.
5. The method of claim 1, wherein the derivatized glutamine antagonist comprises: ##STR00019##
6. The method of claim 1, wherein the biological sample comprises tissue and/or plasma.
7. The method of claim 6, wherein the tissue is brain tissue.
8. The method of claim 1, wherein the method can be used to quantify the glutamine antagonist to levels as low as approximately 30 nM.
9. The method of claim 1, wherein the mass spectrometry is liquid chromatography mass spectrometry (LC-MS) or liquid chromatography tandem mass spectrometry (LC MS/MS).
10. The method of claim 1, wherein reacting the glutamine antagonist in the biological sample with the acidified alcohol comprises heating the glutamine antagonist with the acidified alcohol.
11. The method of claim 10, wherein the heating occurs for approximately 30 minutes.
12. The method of claim 10, wherein the heating occurs at approximately 60 C.
13-26. (canceled)
27. A method for quantifying the amount of a glutamine antagonist in a biological sample resulting from in vivo conversion of a prodrug of the glutamine antagonist to the glutamine antagonist, the method comprising: obtaining a biological sample comprising a glutamine antagonist resulting from in vivo conversion of a prodrug of the glutamine antagonist; reacting the glutamine antagonist in the biological sample with a chromophoric sulfonyl chloride under basic conditions to produce a derivatized glutamine antagonist; performing mass spectrometry (MS) to determine the amount of derivatized glutamine antagonist produced by the reaction; and comparing the amount of derivatized glutamine antagonist produced by the reaction to a standard curve to determine the amount of the glutamine antagonist in the biological sample resulting from in vivo conversion of the prodrug of the glutamine antagonist to the glutamine antagonist.
28. The method of claim 27, wherein the chromophoric sulfonyl chloride is selected from the group consisting of dabsyl chloride, dipsyl chloride, diabsyl chloride, lissamine rhodamine Beta sulfonyl chloride, and pentafluorobenzene sulfonyl chloride.
29. The method of claim 27, wherein the chromophoric sulfonyl chloride is dabsyl chloride.
30. The method of claim 27, wherein the basic conditions comprise a buffer at a pH of 9.
31. The method of claim 27, wherein the basic conditions comprise a sodium bicarbonate buffer at a pH of 9.
32. The method of claim 27, wherein the basic conditions comprise acetone.
33. The method of claim 27, wherein the glutamine antagonist is selected from the group consisting of acivicin (L-(alpha S,5S)-alpha-amino-3-chloro-4,5-dihydro-5-isoxazoleacetic acid), 6-diazo-5-oxo-norleucine (DON), and 5-diazo-4-oxo-L-norvaline (L-DONV), and aza-serine.
34. The method of claim 27, wherein the prodrug of the glutamine antagonist is an ester prodrug of the glutamine antagonist.
35. The method of claim 27, wherein the derivatized glutamine antagonist comprises: ##STR00020##
36. The method of claim 27, wherein the biological sample comprises tissue and/or plasma.
37. The method of claim 36, wherein the tissue is brain tissue.
38. The method of claim 27, wherein the method can be used to quantify the glutamine antagonist to levels as low as between approximately 50 nM and approximately 100 nM.
39. The method of claim 27, wherein the mass spectrometry is liquid chromatography mass spectrometry (LC-MS) or liquid chromatography tandem mass spectrometry (LC MS/MS).
40. The method of claim 27, wherein reacting the glutamine antagonist in the biological sample with the chromophoric sulfonyl chloride comprises heating the glutamine antagonist with the chromophoric sulfonyl chloride.
41. The method of claim 40, wherein the heating occurs for approximately 15 minutes.
42. The method of claim 40, wherein the heating occurs at approximately 60 C.
43. The method of claim 25, wherein the biological sample is obtained from a subject.
44. The method of claim 43, wherein quantifying the amount of the glutamine antagonist in a biological sample comprises testing and/or monitoring the level of a glutamine antagonist in the subject.
45. The method of claim 44, further comprising administering the prodrug of the glutamine antagonist to the subject prior to obtaining the biological sample.
46. The method of claim 27, wherein the chromophoric sulfonyl chloride derivatizes the glutamine antagonist in the biological sample in the absence of hydrolyzing ester prodrugs of the glutamine antagonist in the biological sample.
47. The method of claim 1, wherein the biological sample is obtained from a subject.
48. The method of claim 47, wherein the subject is human.
49. The method of claim 48, wherein quantifying the amount of the glutamine antagonist in the biological sample comprises testing and/or monitoring the level of a glutamine antagonist in the subject.
50. The method of claim 49, further comprising administering the glutamine antagonist to the subject prior to obtaining the biological sample.
Description
BRIEF DESCRIPTION OF THE FIGURES
[0024] Having thus described the presently disclosed subject matter in general terms, reference will now be made to the accompanying Figures, which are not necessarily drawn to scale, and wherein:
[0025]
[0026]
[0027]
[0028]
[0029]
[0030]
DETAILED DESCRIPTION
[0031] The presently disclosed subject matter now will be described more fully hereinafter with reference to the accompanying Examples and Figures, in which some, but not all embodiments of the presently disclosed subject matter are illustrated. The presently disclosed subject matter may be embodied in many different forms and should not be construed as limited to the embodiments set forth herein; rather, these embodiments are provided so that this disclosure will satisfy applicable legal requirements. Indeed, many modifications and other embodiments of the presently disclosed subject matter set forth herein will come to mind to one skilled in the art to which the presently disclosed subject matter pertains having the benefit of the teachings presented in the foregoing descriptions and the associated Examples and Figures. Therefore, it is to be understood that the presently disclosed subject matter is not to be limited to the specific embodiments disclosed and that modifications and other embodiments are intended to be included within the scope of the appended claims.
[0032] The presently disclosed subject matter provides a simple and robust method to quantify a glutamine antagonist, such as 6-diazo-5-oxo-L-norleucine (DON), in complex biological matrices by derivatizing the glutamine antagonist. Advantages of the presently disclosed methods include, but are not limited to, the use of a single solvent for extraction and derivatization which simplifies sample processing and shortens analysis time, unambiguous characterization of the derivatized product, and high sensitivity allowing a lower limit of quantitation than has been reported previously.
[0033] Previously, quantification of DON, an unstable polar compound, has been challenging. Derivatization of DON would not be expected to be successful because, in addition to the presence of a carboxylic acid moiety, there is the added complication of the diazo ketone moiety that lacks stability and is not expected to survive derivatization conditions.
[0034] The presently disclosed subject matter provides a bioanalytical method to quantify a glutamine antagonist by derivatizing the glutamine antagonist in acidified alcohol. Detection of the derivatized glutamine antagonist by mass spectrometry is fast, specific, and can be used to quantify the glutamine antagonist in biological samples, such as plasma and brain tissue, with a limit of detection to the low nanomolar level. The presently disclosed methods can be used in preclinical and clinical settings.
I. Methods for Quantifying the Amount of a Glutamine Antagonist in a Biological Sample
[0035] In some embodiments, the presently disclosed subject matter provides a method for quantifying the amount of a glutamine antagonist in a biological sample, the method comprising: obtaining a biological sample comprising a glutamine antagonist; reacting the glutamine antagonist in the biological sample with an acidified alcohol to produce a derivatized glutamine antagonist; performing mass spectrometry (MS) to determine the amount of derivatized glutamine antagonist produced by the reaction; and comparing the amount of derivatized glutamine antagonist produced by the reaction to a standard curve to determine the amount of the glutamine antagonist in the biological sample. In particular embodiments, the derivatized glutamine antagonist comprises
##STR00007##
[0036] In some embodiments, the presently disclosed subject matter provides a method for quantifying the amount of a glutamine antagonist in a biological sample, the method comprising: obtaining a biological sample comprising a glutamine antagonist; reacting the glutamine antagonist in the biological sample with an acidified alcohol to produce a derivatized glutamine antagonist comprising:
##STR00008##
performing mass spectrometry (MS) to determine the amount of derivatized glutamine antagonist produced by the reaction; and comparing the amount of derivatized glutamine antagonist produced by the reaction to a standard curve to determine the amount of the glutamine antagonist in the biological sample.
[0037] As used herein, the term glutamine antagonist refers to glutamine analogs that can interfere with the ability of glutamine to function. By analog is meant a molecule that is not identical, but has analogous functional or structural features. Particularly, the glutamine antagonists used in the methods have the ability to be derivatized by an acidified alcohol. In particular embodiments, the glutamine antagonist is 6-diazo-5-oxo-L-norleucine (DON). In particular embodiments, the glutamine antagonist is acivicin (L-(alpha S,5S)-alpha-amino-3-chloro-4,5-dihydro-5-isoxazoleacetic acid). In particular embodiments, the glutamine antagonist is 5-diazo-4-oxo-L-norvaline (L-DONV). In particular embodiments, the glutamine antagonist is aza-serine. In some embodiments, the glutamine antagonist (e.g., glutamine analog) is selected from the group consisting of acivicin, DON, L-DONV, and aza-serine.
The presently disclosed subject matter also provides for quantification of prodrugs of glutamine antagonists or analogs.
[0038] In other embodiments, the presently disclosed subject matter provides a method for quantifying the amount of a glutamine antagonist in a biological sample resulting from in vivo conversion of a prodrug of the glutamine antagonist to the glutamine antagonist, the method comprising: obtaining a biological sample comprising a glutamine antagonist resulting from in vivo conversion of a prodrug of the glutamine antagonist; reacting the glutamine antagonist in the biological sample with a chromophoric sulfonyl chloride under basic conditions to produce a derivatized glutamine antagonist; performing mass spectrometry (MS) to determine the amount of derivatized glutamine antagonist produced by the reaction; and comparing the amount of derivatized glutamine antagonist produced by the reaction to a standard curve to determine the amount of the glutamine antagonist in the biological sample resulting from in vivo conversion of the prodrug of the glutamine antagonist to the glutamine antagonist. In particular embodiments, the derivatized glutamine antagonist comprises
##STR00009##
[0039] In other embodiments, the presently disclosed subject matter provides a method for quantifying the amount of a glutamine antagonist in a biological sample resulting from in vivo conversion of a prodrug of the glutamine antagonist to the glutamine antagonist, the method comprising: obtaining a biological sample comprising a glutamine antagonist resulting from in vivo conversion of a prodrug of the glutamine antagonist; reacting the glutamine antagonist in the biological sample with a chromophoric sulfonyl chloride under basic conditions to produce a derivatized glutamine antagonist comprising:
##STR00010##
performing mass spectrometry (MS) to determine the amount of derivatized glutamine antagonist produced by the reaction; and comparing the amount of derivatized glutamine antagonist produced by the reaction to a standard curve to determine the amount of the glutamine antagonist in the biological sample resulting from in vivo conversion of the prodrug of the glutamine antagonist to the glutamine antagonist.
[0040] The presently disclosed subject matter contemplates derivatizing glutamine antagonists resulting from in vivo conversion of any prodrug of the glutamine antagonist to the glutamine antagonist, to provide for quantification of prodrugs of glutamine antagonists or analogs. Examples of suitable prodrugs of glutamine antagonists can be found in U.S. Provisional Application No. 62/199,566 filed on Jul. 31, 2015, which is incorporated herein by reference in its entirety. In particular embodiments, the prodrug of the glutamine antagonist is an ester prodrug of the glutamine antagonist. Exemplary ester prodrugs of the glutamine antagonist of use herein are also found in U.S. Provisional Application No. 62/199,566, including, for example, ester prodrugs of DON, acivicin, L-DONV, and aza-serine.
[0041] In the presently disclosed methods, the glutamine antagonist is obtained in a biological sample. The term biological sample encompasses a variety of sample types useful in the procedure of the presently disclosed subject matter. In one embodiment of the presently disclosed subject matter, the biological sample comprises tissue and/or plasma. In another embodiment, the tissue is brain tissue. Biological samples may include, but are not limited to, solid tissue samples, liquid tissue samples, biological fluids, aspirates, whole blood, hemocytes, serum, or cells and cell fragments. Specific examples of biological samples include, but are not limited to, solid tissue samples obtained by surgical removal, pathology specimens, archived samples, or biopsy specimens, tissue cultures or cells derived therefrom and the progeny thereof, and sections or smears prepared from any of these sources. Other examples of biological samples include any material derived from the body of a vertebrate animal, including, but not limited to, blood, cerebrospinal fluid, serum, plasma, urine, nipple aspirate, fine needle aspirate, tissue lavage such as ductal lavage, saliva, sputum, ascites fluid, liver, kidney, breast, bone, bone marrow, sciatic nerve, testes, brain, ovary, skin, lung, prostate, thyroid, pancreas, cervix, stomach, intestine, colorectal, brain, bladder, colon, nares, uterine, semen, lymph, vaginal pool, synovial fluid, spinal fluid, head and neck, nasopharynx tumors, amniotic fluid, breast milk, pulmonary sputum or surfactant, urine, fecal matter and other liquid samples of biologic origin.
[0042] After obtaining the biological sample comprising a glutamine antagonist, the glutamine antagonist is reacted with an acidified alcohol or chromophoric sulfonyl chloride to produce a derivatized glutamine antagonist. The term acidified alcohol refers to an alcohol that is in an acid, such as in hydrochloric acid (HCl). In some embodiments, the acidified alcohol is acidified butanol. In other embodiments, the acidified alcohol is in 3N HCl. In still other embodiments, reacting the glutamine antagonist in the biological sample with acidified alcohol comprises heating the glutamine antagonist with the acidified alcohol. In further embodiments, heating occurs for approximately 30 minutes. In still further embodiments, heating occurs at approximately 60 C. The term chromophoric sulfonyl chloride refers to a compound that contains a sulfonyl chloride moiety and a chromophore. In some embodiments, the chromophoric sulfonlyl chloride is dabyl chloride. In other embodiments, the chromophoric sulfonyl chloride is selected from the group consisting of dipsyl chloride, dabsyl chloride, lissamine rhodamine Beta sulfonyl chloride, pentafluorobenzene sulfonyl chloride, and combinations thereof. In some embodiments, the chromophoric sulfonyl chloride comprises a fluorophoric sulfonyl chloride, such as dansyl chloride. In some embodiments, the chromophoric sulfonyl chloride derivatizes the glutamine antagonist in the biological sample in the absence of hydrolyzing ester prodrugs of the glutamine antagonist in the biological sample. In further embodiments, heating occurs for approximately 15 minutes. In still further embodiments, heating occurs at approximately 60 C. In particular embodiments, the basic conditions comprise a buffer at a pH of 9. In particular embodiments, the basic conditions comprise a sodium bicarbonate buffer at a pH of 9. In further particular embodiments, the basic conditions comprise acetone. In certain embodiments, the glutamine antagonist is reacted with a chromophoric sulfonyl chloride in acetone and a sodium bicarbonate buffer at a pH of 9 by heating at 60 C. for approximately 15 minutes.
[0043] In some embodiments, the term derivatized glutamine antagonist as used herein refers to a glutamine antagonist that is derivatized to comprise the structure:
##STR00011##
Those skilled in the art will appreciate that the structure of the derivatized glutamine antagonist shown above is the resulting structure for when DON is the glutamine antagonist derivatized with an acidified alcohol. Similarly, based on the chemistry of the derivization reaction and the guidance herein, those skilled in the art will be able to readily envision the structures of other glutamine antagonists derivatized with acidified alcohol, such as the structures of acivicin, L-DONV, and aza-serine derivitized with acidified alcohol, even though such structures are not shown herein.
[0044] In other embodiments, the term derivatives glutamine antagonist as used herein refers to a glutamine antagonist that is derivatized to comprise the structure:
##STR00012##
Those skilled in the art will appreciate that the structure of the derivatized glutamine antagonist shown above is the resulting structure for when DON is the glutamine antagonist derivatized with the chromophoric sulfonyl chloride dabsyl chloride. Similarly, based on the chemistry of the derivitization reaction and guidance herein, those skilled in the art will be able to readily envision the structures of other glutamine antagonists resulting from in vivo conversion of prodrugs of glutamine antagonists, such as acivicin, L-DONV, and aza-serine resulting from in vivo conversion of prodrugs of acivicin, L-DONV, and azaserine, derivitized with other chromphoric sulfonyl chlorides, such as dipsyl chloride, dabsyl chloride, lissamine rhodamine Beta sulfonyl chloride, pentafluorobenzene sulfonyl chloride.
[0045] After the derivatized glutamine antagonist is produced, mass spectrometry is used to determine the amount of derivatized glutamine antagonist produced by the reaction. In some embodiments, the mass spectrometry is liquid chromatography mass spectrometry (LC-MS) or liquid chromatography tandem mass spectrometry (LC MS/MS). In other embodiments, the method can be used to quantify the glutamine antagonist to levels as low as approximately 30 nM. In still other embodiments, the method can be used to quantify the glutamine antagonist, resulting from in vivo conversion of a prodrug of the glutamine antagonist to the glutamine antagonist, to levels as low as between approximately 50 nM and approximately 100 nM. In still other embodiments, the results from the mass spectrometry analysis are compared to a standard curve to determine the amount of the glutamine antagonist found in the biological sample.
II. Methods for Testing and/or Monitoring the Levels of a Glutamine Antagonist in a Subject
[0046] In some embodiments, the presently disclosed subject matter provides methods for testing the levels of a glutamine antagonist in a subject. In some embodiments, the levels of a glutamine antagonist are tested in a subject more than once to monitor the levels over a period of time.
[0047] Accordingly, in some embodiments, the presently disclosed subject matter provides a method for testing and/or monitoring the level of a glutamine antagonist in a subject, the method comprising: obtaining a biological sample comprising a glutamine antagonist from the subject; reacting the glutamine antagonist in the biological sample with an acidified alcohol to produce a derivatized glutamine antagonist; performing mass spectrometry (MS) to determine the amount of derivatized glutamine antagonist produced by the reaction; and comparing the amount of derivatized glutamine antagonist produced by the reaction to a standard curve to determine the level of glutamine antagonist in the subject. In particular embodiments, the glutamine antagonist is 6-diazo-5-oxo-L-norleucine (DON). In particular embodiments, the derivatized glutamine antagonist comprises
##STR00013##
[0048] In some embodiments, the presently disclosed subject matter provides a method for testing and/or monitoring the level of a glutamine antagonist in a subject, the method comprising: obtaining a biological sample comprising a glutamine antagonist from the subject; reacting the glutamine antagonist in the biological sample with an acidified alcohol to produce a derivatized glutamine antagonist comprising:
##STR00014##
performing mass spectrometry (MS) to determine the amount of derivatized glutamine antagonist produced by the reaction; and comparing the amount of derivatized glutamine antagonist produced by the reaction to a standard curve to determine the level of glutamine antagonist in the subject. In particular embodiments, the glutamine antagonist is 6-diazo-5-oxo-L-norleucine (DON). In particular embodiments, the glutamine antagonist is acivicin. In particular embodiments, the glutamine antagonist is L-DONV. In particular embodiments, the glutamine antagonist is aza-serine. In some embodiments, the glutamine antagonist (e.g., glutamine analog) is selected from the group consisting of acivicin, DON, L-DONV, and aza-serine.
[0049] In other embodiments, the presently disclosed subject matter provides a method testing and/or monitoring the level of a glutamine antagonist in a subject resulting from in vivo conversion of a prodrug of the glutamine antagonist to the glutamine antagonist, the method comprising: obtaining from a subject a biological sample comprising a glutamine antagonist resulting from in vivo conversion in the subject of a prodrug of the glutamine antagonist to the glutamine antagonist; reacting the glutamine antagonist in the biological sample with a chromophoric sulfonyl chloride under basic conditions to produce a derivatized glutamine antagonist; performing mass spectrometry (MS) to determine the amount of derivatized glutamine antagonist produced by the reaction; and comparing the amount of derivatized glutamine antagonist produced by the reaction to a standard curve to determine the amount of the glutamine antagonist in the biological sample resulting from in vivo conversion of the prodrug of the glutamine antagonist to the glutamine antagonist. In particular embodiments, the derivatized glutamine antagonist comprises
##STR00015##
[0050] In other embodiments, the presently disclosed subject matter provides a method testing and/or monitoring the level of a glutamine antagonist in a subject resulting from in vivo conversion of a prodrug of the glutamine antagonist to the glutamine antagonist, the method comprising: obtaining from a subject a biological sample comprising a glutamine antagonist resulting from in vivo conversion in the subject of a prodrug of the glutamine antagonist to the glutamine antagonist; reacting the glutamine antagonist in the biological sample with a chromophoric sulfonyl chloride under basic conditions to produce a derivatized glutamine antagonist comprising:
##STR00016##
performing mass spectrometry (MS) to determine the amount of derivatized glutamine antagonist produced by the reaction; and comparing the amount of derivatized glutamine antagonist produced by the reaction to a standard curve to determine the amount of the glutamine antagonist in the biological sample resulting from in vivo conversion of the prodrug of the glutamine antagonist to the glutamine antagonist. In particular embodiments, the prodrug of the glutamine antagonist is an ester prodrug of the glutamine antagonist. In particular embodiments, the ester prodrug of the glutamine antagonist is an ester prodrug of acivicin. In particular embodiments, the ester prodrug of the glutamine antagonist is an ester prodrug of L-DONV. In particular embodiments, the ester prodrug of the glutamine antagonist is an ester prodrug of aza-serine.
[0051] The subject treated by the presently disclosed methods in their many embodiments is desirably a human subject, although it is to be understood that the methods described herein are effective with respect to all vertebrate species, which are intended to be included in the term subject. Accordingly, a subject can include a human subject for medical purposes, such as for the treatment of an existing condition or disease or the prophylactic treatment for preventing the onset of a condition or disease, or an animal (non-human) subject for medical, veterinary purposes, or developmental purposes. Suitable animal subjects include mammals including, but not limited to, primates, e.g., humans, monkeys, apes, and the like; bovines, e.g., cattle, oxen, and the like; ovines, e.g., sheep and the like; caprines, e.g., goats and the like; porcines, e.g., pigs, hogs, and the like; equines, e.g., horses, donkeys, zebras, and the like; felines, including wild and domestic cats; canines, including dogs; lagomorphs, including rabbits, hares, and the like; and rodents, including mice, rats, and the like. An animal may be a transgenic animal. In some embodiments, the subject is a human including, but not limited to, fetal, neonatal, infant, juvenile, and adult subjects. Further, a subject can include a patient afflicted with or suspected of being afflicted with a condition or disease. Thus, the terms subject and patient are used interchangeably herein. In some embodiments, the subject is human. In other embodiments, the subject is non-human. In still other embodiments, the biological sample comprises tissue and/or plasma. In further embodiments, the tissue is brain tissue.
[0052] In some embodiments, the acidified alcohol is acidified butanol. In other embodiments, the acidified alcohol is in 3N HCl. In still other embodiments, reacting the glutamine antagonist in the biological sample with an acidified alcohol comprises heating the glutamine antagonist with the acidified alcohol. In further embodiments, heating occurs for approximately 30 minutes. In still further embodiments, heating occurs at approximately 60 C.
[0053] In some embodiments, the chromophoric sulfonyl chloride is dabsyl chloride. In other embodiments, the chromophoric sulfonyl chloride is selected from the group consisting of dipsyl chloride, dabsyl chloride, lissamine rhodamine Beta sulfonyl chloride, pentafluorobenzene sulfonyl chloride, and combinations thereof. In further embodiments, reacting the glutamine antagonist in the biological sample with a chromophoric sulfonyl chloride comprises heating the glutamine antagonist with the chromophoric sulfonyl chloride under basic conditions. In further embodiments, heating occurs for approximately 15 minutes. In still further embodiments, heating occurs at approximately 60 C. In further embodiments, the basic conditions comprise a buffer at a pH of 9. In particular embodiments, the basic conditions comprise a sodium bicarbonate buffer at a pH of 9. In still even further embodiments, the basic conditions comprise acetone.
[0054] In some embodiments, the mass spectrometry to determine the amount of derivatized glutamine antagonist is liquid chromatography mass spectrometry (LC-MS) or liquid chromatography tandem mass spectrometry (LC MS/MS). In other embodiments, the method can be used to quantify the glutamine antagonist to levels as low as approximately 30 nM. In certain embodiments, the method can be used to quantify the glutamine antagonist, resulting from in vivo conversion of a prodrug of the glutamine antagonist to the glutamine antagonist, to levels as low as between approximately 50 nM and 100 nM.
[0055] In some embodiments, the presently disclosed methods further comprise administering the glutamine antagonist or a prodrug of the glutamine antagonist (e.g., an ester prodrug) to the subject before obtaining the biological sample from the subject. This may be a beneficial step when the glutamine antagonist is used as a tool compound in preclinical in vivo models or as a clinical candidate. The term administering as used herein refers to contacting a subject with a glutamine antagonist.
III. General Definitions
[0056] Although specific terms are employed herein, they are used in a generic and descriptive sense only and not for purposes of limitation. Particular definitions are provided herein for clarity. Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this presently described subject matter belongs.
[0057] Following long-standing patent law convention, the terms a, an, and the refer to one or more when used in this application, including the claims. Thus, for example, reference to a subject includes a plurality of subjects, unless the context clearly is to the contrary (e.g., a plurality of subjects), and so forth.
[0058] In this disclosure, comprises, comprising, containing and having and the like can have the meaning ascribed to them in U.S. Patent law and can mean includes, including, and the like; consisting essentially of or consists essentially likewise has the meaning ascribed in U.S. Patent law and the term is open-ended, allowing for the presence of more than that which is recited so long as basic or novel characteristics of that which is recited is not changed by the presence of more than that which is recited, but excludes prior art embodiments.
[0059] Unless specifically stated or obvious from context, as used herein, the term about is understood as within a range of normal tolerance in the art, for example within 2 standard deviations of the mean. About can be understood as within 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, 1%, 0.5%, 0.1%, 0.05%, or 0.01% of the stated value. Unless otherwise clear from context, all numerical values provided herein are modified by the term about
[0060] Ranges provided herein are understood to be shorthand for all of the values within the range. For example, a range of 1 to 50 is understood to include any number, combination of numbers, or sub-range from the group consisting of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or 50, as well as all intervening decimal values between the aforementioned integers such as, for example, 1.1, 1.2, 1.3, 1.4, 1.5, 1.6, 1.7, 1.8, and 1.9. With respect to sub-ranges, nested sub-ranges that extend from either end point of the range are specifically contemplated. For example, a nested sub-range of an exemplary range of 1 to 50 may comprise 1 to 10, 1 to 20, 1 to 30, and 1 to 40 in one direction, or 50 to 40, 50 to 30, 50 to 20, and 50 to 10 in the other direction.
[0061] Any compositions or methods provided herein can be combined with one or more of any of the other compositions and methods provided herein.
[0062] For the purposes of this specification and appended claims, unless otherwise indicated, all numbers expressing amounts, sizes, dimensions, proportions, shapes, formulations, parameters, percentages, quantities, characteristics, and other numerical values used in the specification and claims, are to be understood as being modified in all instances by the term about even though the term about may not expressly appear with the value, amount or range. Accordingly, unless indicated to the contrary, the numerical parameters set forth in the following specification and attached claims are not and need not be exact, but may be approximate and/or larger or smaller as desired, reflecting tolerances, conversion factors, rounding off, measurement error and the like, and other factors known to those of skill in the art depending on the desired properties sought to be obtained by the presently disclosed subject matter.
EXAMPLES
[0063] The following Examples have been included to provide guidance to one of ordinary skill in the art for practicing representative embodiments of the presently disclosed subject matter. In light of the present disclosure and the general level of skill in the art, those of skill can appreciate that the following Examples are intended to be exemplary only and that numerous changes, modifications, and alterations can be employed without departing from the scope of the presently disclosed subject matter. The synthetic descriptions and specific examples that follow are only intended for the purposes of illustration, and are not to be construed as limiting in any manner to make compounds of the disclosure by other methods.
Example 1
Methods
[0064] DON Derivatization:
[0065] DON was derivatized in the presence of 3N HCln-butanol. DON (Sigma-Aldrich, St. Louis, Mo.) was first dissolved in water at a concentration of 10 mM. An aliquot (10 L) of this stock solution was added to 3N HCln-butanol (250 L) in a low retention micro-centrifuge tube. The solution was then heated at 60 C. for 30 minutes in a shaking water bath. After heating, the sample was dried at 45 C. under a nitrogen stream, resuspended in 50 L of water/acetonitrile (70:30), vortexed and centrifuged at 16,000g. Supernatants were transferred to LC vials and an aliquot (2 L) was used for liquid chromatography mass spectrometry (LC-MS) or liquid chromatography tandem mass spectrometry (LC MS/MS) analysis.
[0066] DON Derivatization when Analyzing DON Resulting from Conversion of DON Prodrugs In Vivo:
[0067] When performing bioanalysis of DON in tissues resulting from conversion of DON prodrugs in vivo, acidic conditions used to derivatize DON could also hydrolyze prodrug moieties. This would make it difficult to differentiate DON converted from prodrug in vivo vs. DON converted from prodrug during sample preparation. Consequently, when analyzing for DON conversion from prodrugs, DON derivatization is carried out with dabsyl chloride which does not cause hydrolysis of esters. DON is extracted from approximately 50 mg samples with 5 L methanol containing Glutamate-d5/mg tissue by pestle homogenization and vortexing in low retention tubes. Samples are centrifuged at 16,000g for 5 min to precipitate proteins. Supernatants (200 L) are moved to new tube and dried at 45 C. under vacuum for 1 h. To each tube, 50 L of 0.2 M sodium bicarbonate buffer (pH 9.0) and 100 L a 10 mM dabsyl chloride stock in acetone is added. After vortexing, samples are incubated at 60 C. for 15 minutes to derivatize (see scheme A below). Samples (2-10 L) are injected and separated on an Agilent 1290 equipped with a SB-AQ column over a 4 minute gradient from 20-95% acetonitrile+0.1% formic acid and quantified on an Agilent 6520 QTOF mass spectrometer.
##STR00017##
[0068] Analysis of Derivatized DON by LC-MS:
[0069] Derivatized DON samples (2 L) prepared as described above were injected and separated on an Agilent 1290 LC equipped with an Agilent Eclipse Plus 2.1100 mm, 1.8 micron Rapid Resolution C18 column over a 5.5 minute gradient from 30-70% acetonitrile+0.1% formic acid. Analytes were detected with an Agilent 6520 quadrupole time-of-flight (QTOF) mass spectrometer in positive mode with drying gas at 350 C., 11 L/min and 40 psi. The fragmenter was set at 70V and the VCAP at 4000V.
[0070] Analysis of Derivatized DON by LC-MS/MS:
[0071] Analysis of derivatized DON after 3N HCln-butanol by LC-MS/MS was carried out in the same manner as for LC-MS except the precursor mass (m/z=218.09 L) was selected in the first quadrupole and the compound was made to collide with nitrogen gas with a collision energy of 15V in MS/MS mode to afford the daughter ions with m/z=162.032 and 116.026.
[0072] Analysis of Underivatized DON by LC-MS:
[0073] Methanol (250 L) was added to plasma samples containing DON (50 L); samples were centrifuged for 5 min at 16,000g to precipitate proteins. An aliquot of the supernatant (200 L) was dried and subsequently reconstituted in H.sub.2O (50 L). An aliquot (20 L) was then injected and separated on an Agilent 1290 LC equipped with a Thermo Hypercarb 2.1100 mm column with isocratic 2.5% acetonitrile+0.1% formic acid mobile phase. Analytes were detected with an Agilent 6520 QTOF in MS mode as when analyzing derivatized DON by LC-MS.
[0074] Bioanalysis of DON in Plasma:
[0075] When using plasma, DON was derivatized only using 3N HCl plus n-butanol and subsequently analyzed by LC-MS. To generate the standard curve to determine DON concentrations in plasma, DON (10 L of 1 mM water solution) was added to untreated mouse plasma (90 L) in a low retention micro-centrifuge tube. Standard solutions (100 L) were then prepared by serial dilution to generate concentrations from 10 nM to 100 M at half-log intervals. Prior to extraction, frozen plasma samples were thawed on ice. N-butanol (250 L) containing 3N HCl was added directly to standards (50 L), vortexed and centrifuged at 16,000g for 5 minutes in low retention micro-centrifuge tubes to precipitate proteins. An aliquot (200 L) of the supernatant was transferred to a new tube and incubated at 60 C. for 30 minutes in a shaking water bath to carry out the derivatization reaction. After derivatization, an aliquot of the reaction mixture (2 L) was injected and analyzed by LC-MS as stated above. The area under the curve (AUC) representing the signal intensity of the extracted ion (m/z 218.0942) for each sample was used to generate the standard curve using Agilent Mass Hunter Quantitative analysis software. Plasma samples obtained from mice treated with DON were treated in exactly the same manner except exogenous DON was not added. DON concentrations in plasma samples were determined by interpolation using the standard curve.
[0076] Bioanalysis of DON in Brain:
[0077] When using brain, DON was derivatized only using 3N HCl plus n-butanol and subsequently analyzed by LC-MS. In order to generate the standard curve to determine DON concentrations in brain, frozen brain samples from untreated mice were thawed on ice. Tissue was weighed in low retention micro-centrifuge tubes to which 5 L n-butanol containing 3N HCl were added per mg tissue. Tissue was then homogenized with a pestle and vortexed. Known amounts of DON from a 1 mM stock solution in water were mixed with n-butanol containing 3N HCl and spiked to brain tissue to prepare standards at concentrations from 10 nM to 100 M at half-log intervals. Samples were centrifuged at 16,000g for 5 minutes in low retention micro-centrifuge tubes to precipitate proteins. An aliquot (200 L) of the supernatant was transferred to a new tube and incubated at 60 C. for 30 minutes in a shaking water bath to carry out the derivatization reaction. After derivatization, an aliquot of the reaction mixture (2 L) was injected and analyzed by LC-MS as stated above. Brain samples obtained from mice treated with DON were treated in exactly the same manner except exogenous DON was not added. DON concentrations in brain samples were determined by interpolation using the standard curve.
[0078] Animal Studies:
[0079] All protocols were approved by the animal care and use committee at The Johns Hopkins University. C57BL/6 male mice (4-5 week old) after overnight fasting were administered DON at different doses either intravenously (i.v.) or intraperiotoneally (i.p.) as indicated. DON working solution was diluted in PBS each day from aliquots of a 100 mM stock solution in PBS stored at 80 C. At the indicated time points after DON administration, mice were euthanized in a CO.sub.2 chamber and blood was collected transcardially. When collecting brains, mice were perfused with PBS before brain collection. Samples were frozen immediately at 80 C. and kept frozen until time for bioanalysis. Plasma and brain samples were processed and analyzed as stated in the bioanalysis of DON in plasma and brain sections.
Example 2
Results
[0080] LC-MS Analysis after DON Derivatization in 3N HCl n-Butanol Shows the Presence of a Chlorine-Containing Derivative:
[0081] During DON derivatization using 3N HCl plus n-butanol, it was found that the diazo ketone moiety reacted and rearranged to form a stable and quantifiable derivative (
[0082] LC-MS/MS Analysis of Fragmentation Pattern of Ester-Containing Derivative Confirms the Presence of Cyclic Structure and Chlorine Atom:
[0083] In a separate experiment, DON was derivatized with 3N HCln-butanol and subsequently analyzed by LC-MS/MS. The resulting product ions of 162.0318 and 116.0262 match the loss of the butyl ester and a radical formed after the loss of the entire carboxylate-ester moiety respectively (
[0084] DON Derivative was Quantified from Plasma and Brain Tissue Using LC-MS:
[0085] In order to verify that the DON derivatization protocol was adequate to use to determine DON concentrations in biological matrices, known concentrations of DON were added to mouse plasma and brain followed by derivatization using 3N HCl in n-butanol. Derivatized samples were then analyzed by LC-MS and a standard curve for each matrix was generated. In each case there was a linear correlation between signal response and the concentration of derivatized material. Standard curves were linear in the 30 nM-100 M range for both plasma (
[0086] DON was Measured in Plasma and Brain Using the New Bioanalysis Procedure:
[0087] The new derivatizing procedure was used to determine DON concentrations in plasma and brain following i.v. and i.p. administration. In the first study, mice were given DON (1.6 mg/kg, i.v.) and blood was collected at 0.25, 0.5, 1, 2, 4 and 6 h. The exposure of DON estimated from the area under the curve (AUC) was 8 nmol h/mL with a plasma half-life of 1.2 h (
[0088] Analysis of Derivatized DON or Intact DON Gave the Same Results:
[0089] It is conceivable that when DON is used in vivo, it could form byproducts that could also form the derivatized structure. To determine if this was the case, DON concentration was measured both directly using a less sensitive method (LOD>1 M) and through acidified butanol derivatization in plasma samples collected from mice 15 min after DON administration (1.6 mg/kg i.v.). The two methods gave the same DON concentration within experimental error: 3.9 M0.3 and 4.2 M0.8 when using the direct and derivatization methods respectively (
Example 3
Discussion
[0090] Several quantification methods for DON have been previously described (M. P. Sullivan et al., Pharmacokinetic and phase I study of intravenous DON (6-diazo-5-oxo-L-norleucine) in children, Cancer Chemother. Pharmacol. 21 (1988) 78-84; C. Mueller et al., A phase IIa study of PEGylated glutaminase (PEG-PGA) plus 6-diazo-5-oxo-L-norleucine (DON) in patients with advanced refractory solid tumors J. Clin. Oncol. 26 (2008) 2533; B. B. Cao et al., The hypothalamus mediates the effect of cerebellar fastigial nuclear glutamatergic neurons on humoral immunity, Neuro. Endocrinol. Lett. 33 (2012) 393-400; L. M. Shelton et al., Glutamine targeting inhibits systemic metastasis in the VM-M3 murine tumor model, Int. J. Cancer. 127 (2010) 2478-2485) all with limits of detection in the low micromolar level.
[0091] HPLC/fluorescence, radiolabel and microbiological assays all have the potential for nonspecific signals. DON is a polar amino acid that elutes unretained in the void volume with many other polar compounds during reverse phase chromatography (RPC). Due to ion suppression and poor chromatography that result in broad irregular peak shapes, DON cannot be successfully separated and quantified from complex matrices such as brain and plasma with ordinary RPC. Direct measurement of DON quantification by LC/MS has been possible by using a porous graphitic carbon-based chromatographic column (Hypercarb) that minimizes the ion-suppression seen with the silica-based C18 column (unpublished observation); this measurement, however, also exhibits low sensitivity (LOD>1 M) so it is not an alternative for routine pharmacokinetics samples where low nanomolar levels are of interest.
[0092] Polar amino acids are often derivatized to make them more amenable to separation by RPC (Molnar-Perl, (Ed.) Quantitation of Amino Acids and Amines by Chromatography: Methods and Protocols Elsevier (2005)). Esterification of the carboxylic acid on an amino acid improves RPC separation and increases the analyte mass which enhances ionization at the electrospray source of the mass spectrometer. For example, derivatization with an n-butyl ester has been used to quantify plasma methylmalonic acid (M. M. Kushnir et al., Analysis of dicarboxylic acids by tandem mass spectrometry. High-throughput quantitative measurement of methylmalonic acid in serum, plasma, and urine, Clin. Chem. 47 (2001) 1993-2002). In the case of DON, however, in addition to the presence of a carboxylic acid moiety, there is the added complication of the diazo ketone moiety that lacks stability and is not expected to survive derivatization conditions.
[0093] In an effort to develop a reliable way to measure DON in complex biological matrices, DON was incubated with butanol in 3N HCl for 30 min at 60 C., the same procedure used to derivatize carboxylic acids to make the corresponding n-butyl ester (M. M. Kushnir et al., Analysis of dicarboxylic acids by tandem mass spectrometry. High-throughput quantitative measurement of methylmalonic acid in serum, plasma, and urine, Clin. Chem. 47 (2001) 1993-2002). DON derivatization under these conditions produced a chlorine containing derivative as supported by the 3:1 isotopic abundance ratio between the molecular ion (218.0942) and the M+2 (220.0912) (
[0094] In a separate effort to confirm the structure of derivatized DON, the product of derivatization was analyzed after collision induced dissociation (CID). The fragmentation pattern was consistent with the presence of an ester-containing derivative, and a 1-pyrroline ring with a methylene chlorine substitution (
[0095] A possible mechanism of the derivatization reaction in the absence of butanol is illustrated in Scheme B. At low pH (3N HCl), the -carbon of the carbonyl close to the diazo moiety will abstract a proton from the solvent resulting in a diazonium ion. In the next step, the same -carbon undergoes chlorine ion addition and concomitant N.sub.2 loss. The chloromethyl ketone undergoes cyclization and dehydration to form the 1-pyrrolinedine derivative (5-member ring 1-pyrrolinedine with the methylene chlorine substitution) illustrated in Scheme B. When the derivatization reaction is carried out in n-butanol containing 3N HCl, the carboxylic acid moiety also will undergo standard acid-catalyzed esterification of the carboxylate moiety with the n-butyl group (P. Sykes, A guidebook to mechanism in organic chemistry, Third edition ed., Longman Group Limited (1975)).
##STR00018##
[0096] A new derivatizing procedure has been used to determine DON concentrations in both plasma and brain from mice after DON administration. First, standard curves were generated of signal intensity vs. known concentrations of DON that were added to both plasma and brain followed by derivatization, extraction and bioanalysis. The resulting standard curves for plasma (
[0097] One potential drawback of the bioanalysis procedure is that DON could cyclize in vivo to form a byproduct, which in turn could convert into the analyte during derivatization. This could give artificially high DON concentrations. To rule out this possibility, a control experiment was performed where DON concentrations obtained when using the derivatizing protocol (3N HCl+n-butanol) and when measuring DON directly were compared. Even though direct measurement of DON is far less sensitive than when using the derivatizing procedure (LOD for direct method >1 M vs. LOD for derivatizing procedure=30 nM), when measuring M levels of DON, a side by side comparison of the two methods would unveil whether the derivatization method is measuring DON byproducts. It was found that the derivatization procedure gave the same DON concentrations within error as the direct measurements of underivatized DON (
[0098] In summary, a simple and robust method has been developed to quantify DON in complex biological matrices using UPLC/MS after DON derivatization with acidified butanol. DON in the sample is made to react with n-butanol containing 3 N HCl to form butyl 5-(chloromethyl)-3,4-dihydro-2H-pyrrole-2-carboxylate. A single solvent for extraction and derivatization solution simplifies sample processing and shortens analysis time. The derivatization LC/MS method is rapid, reproducible and rigorous and has a lower limit of quantitation of 30 nM that is over 30-fold more sensitive than methods reported in the literature. Mass spectrometry is able to reduce nonspecific signal, since only one analyte with a specific molecular formula is quantified. This method was applied to monitor DON levels in plasma and brain and could readily be applied to other tissues as well.
REFERENCES
[0099] All publications, patent applications, patents, and other references mentioned in the specification are indicative of the level of those skilled in the art to which the presently disclosed subject matter pertains. All publications, patent applications, patents, and other references are herein incorporated by reference to the same extent as if each individual publication, patent application, patent, and other reference was specifically and individually indicated to be incorporated by reference. It will be understood that, although a number of patent applications, patents, and other references are referred to herein, such reference does not constitute an admission that any of these documents forms part of the common general knowledge in the art. In case of a conflict between the specification and any of the incorporated references, the specification (including any amendments thereof, which may be based on an incorporated reference), shall control. 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[0140] Although the foregoing subject matter has been described in some detail by way of illustration and example for purposes of clarity of understanding, it will be understood by those skilled in the art that certain changes and modifications can be practiced within the scope of the appended claims.