METHOD OF IMPROVING CHLOROPLAST FUNCTION AND INCREASING SEED YIELD
20180245093 ยท 2018-08-30
Inventors
Cpc classification
C12N15/8261
CHEMISTRY; METALLURGY
C12N15/8243
CHEMISTRY; METALLURGY
Y02A40/146
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
International classification
Abstract
Ascorbate protects tissues against damage caused by reactive oxygen species (ROS) produced through normal metabolism or generated from stress. The inositol route to AsA involves four enzymes: myo-inositol oxygenase, glucuronate reductase, gluconolactonase (GNL), and
Claims
1. A method of increasing production of
2. The method of claim 1 further comprising: Over-expressing the GNL.
3. The method of claim 1 wherein the plant exhibits increased production of AsA.
4. The method of claim 1 where the plant exhibits enhanced photosynthetic capacity and/or enhanced seed yield.
5. The method of the claim 1 wherein the GNL is At1g56500.
6. The method of claim 2 wherein the plant is Arabidopsis.
7. A method for increasing production of
8. The method of claim 6 wherein said step of genetically engineering includes i) isolating and purifying the GNL; and ii) transforming said plant with said GNL.
9. The method of claim 8 wherein said step of genetically engineering said plant results in increasing production of AsA compared to a control plant of the same species lacking the GNL.
10. The method of claim 8 wherein said step of genetically engineering said plant results in enhancing the photosynthetic capacity of the plant and/or enhanced seed yield of the plant compared to a control plant of the same species lacking said over-expressing GNL.
11. The method of the claim 7 wherein the GNL is At1g56500.
12. The method of the claim 9 wherein the GNL is At1g56500
13. The method of the claim 10 wherein the GNL is At1g56500
14. The method of claim 9 wherein the plant is Arabidopsis.
15. The method of claim 10 wherein the plant is Arabidopsis.
16. A plant genetically engineered to over-express a gluconolactonase (GNL), the plant comprising: Over-expressed GNL wherein said genetically engineered transgenic plant has increased vitamin C content as compared to a control plant of the same species lacking the GNL.
17. The plant of claim 16 wherein said plant exhibits increased production of AsA compared to a control plant of the same species lacking the GNL.
18. The method of claim 16 wherein said plant exhibits increased seed yield compared to a control plant of the same species lacking the GNL.
19. The plant of claim 16 wherein the GNL is At1g56500
20. The plant of claim 16 wherein the plant is Arabidopsis.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0050] In the following drawings, which form a part of the specification and which are to be construed in conjunction therewith, and in which like reference numerals have been employed throughout wherever possible to indicate like parts in the various views:
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DETAILED DESCRIPTION
[0088] Arabidopsis thaliana ecotype Columbia wild type seeds (Col-0, stock #CS60000), SALK_026172, and SALK_011623 were obtained from the Arabidopsis Biological Resource Center (ABRC, Columbus, Ohio). Seeds were sterilized with 70% (v/v) ethanol for 10 min followed by 50% (v/v) sodium hypochlorite containing 0.05% (v/v) Tween-20 for 15 min. Next, seeds were washed 6 times with sterile water. Finally, seeds were transferred to a petri dish containing medium which consisted of Murashige-Skoog (MS) salts (Murashige and Skoog, 1962), MS vitamins, and 3% (w/v) sucrose, at pH 5.6. The medium was supplemented with 0.04% (w/v) MgSO.sub.4.7H.sub.2O. The seeds were vernalized for 3 days at 4 C. Plates were transferred to a growth chamber and incubated at 23 C., 65% humidity, 16:8 h photoperiod and 200 mol/m.sup.2/s light intensity. After establishment, seedlings were transferred to PM-15-13 AIS MIX Arabidopsis soil (Lehle-Seeds, Round Rock, Tex.) in 2 inch pots. Pots were covered with a dome for one week and after that plants were grown until they reached maturity.
[0089] Nicotiana benthamiana seeds were obtained from The Department of Plant Pathology, Physiology and Weed Science at Virginia Polytechnic Institute and State University (Blacksburg, Va.). Seeds were sown in 4.5 inch pots containing Pro-mix BX soil (Premier Horticulture Ltd, Canada) with fertilizer Osmocote 14-14-14 (Scotts, Canada). Vermiculite was overlaid on top of the seeds. The pots were covered with a dome for one week. Plants were grown in an environmental control chamber with the following conditions: 25 C. (day)/21 C. (night) temperature, 65% relative humidity, 16:8 h photoperiod, and 150 mol/m.sup.2/s light intensity.
2.2.2. Constructs of Interest
[0090] Two gene constructs were made for this project. The first construct is one where the cDNA encoding a putative AtGNL was placed under the control of the 35S promoter and the tobacco etch virus (TEV) enhancer (AtGNL-6HIS:pBIB-Kan), (Becker, 1990). In this construct a histidine tag was added to the C-terminus of the protein of interest to allow detection using antibodies and to facilitate purification. The second construct is one where the putative promoter region of the AtGNL (a 1000 bp fragment preceding the ATG) was cloned and fused to the GUS reporter gene to better understand the spatial and temporal expression of this gene (pAtGNL:pCAMBIA1305.1).
2.2.3. Development of Transgenic Lines
[0091] To study the expression of AtGNL in Arabidopsis thaliana, stable transgenic plants were developed by the floral dip method (Clough and Bent, 1998). Wild type CS60000 and knockouts: SALK_026172 and SALK_011623, were transformed with the Agrobacterium tumefaciens GV3101 strain carrying the construct of interest. The T0 seeds were planted on MS medium plus kanamycin. The antibiotic resistant seedlings were transferred to soil and grown to maturity under the above stated conditions. The presence of the transgene of interest was established via PCR using gene specific primers, and genomic cDNA as a template. To develop homozygous versions of the knockout lines, over-expresser (wild type plus AtGNL), and restored lines (knockouts plus AtGNL) T1 plants that were high AsA expressers were identified. The seeds of those plants were sterilized with 70% (v/v) ethanol for 10 min followed by 50% (v/v) sodium hypochlorite containing 0.05% (v/v) Tween-20 for 15 min. Next, seeds were washed 6 times with sterile water. Finally, seeds were transferred to petri dishes containing Murashige and Skoog (MS) medium which consists of salts, MS vitamins, and 3% (w/v) sucrose at pH 5.6. The medium was supplemented with 0.04% (w/v) MgSO.sub.4.7H.sub.2O, and 50 mg/L kanamycin. Plated seeds were vernalized for 3 days at 4 C. After establishment, seedlings were transferred to soil and grown under the above stated conditions until they reached maturity. This process was repeated until plants with a 100% germination score in the presence of antibiotic selection were developed.
2.2.4. Ascorbate Measurements
[0092] In Arabidopsis, in planta AsA concentration changes throughout the day as well as during development (Tamaoki et al., 2003; Zhang et al., 2009). Fifty mg of leaf tissue were collected between 9:00 am and 11:00 am. Tissue was frozen immediately in liquid nitrogen and stored at 80 C. until analyzed. Reduced, oxidized, and total AsA were measured using a 96-well plate format as described by Haroldsen et al., (2011). Briefly, frozen tissue was pulverized in 6% (w/v) meta-phosphoric acid, and centrifuged at 13,000 rpm for 15 min. Reduced AsA was determined by measuring the decrease in absorbance at 265 nm after addition of 0.5 unit of ascorbate oxidase to 300 L of the reaction medium containing the plant extract and 100 mM phosphate buffer at pH 6.9. Oxidized ascorbate was measured in a 300 L reaction mixture with 10 L of 40 mM dithiothreitol (DTT) after incubation in the dark for 20 min at room temperature. The reaction was followed by measuring absorption at 265 nm. Calculations were made based on a standard curve made with pure
2.2.5. Transient Expression of AtGNL in Nicotiana benthamiana
[0093] In order to test its function the putative GNL recombinant protein was produced in Nicotiana benthamiana. This plant is a widely used platform for the production of active proteins, including antibodies, enzymes and other proteins that require post-translational modifications (Klimyuk et al., 2012; Leuzinger et al., 2013). To find the optimal expression time, five week old N. benthamiana plants were vacuum infiltrated with the At1g56500-6HIS.pBIB-kan construct as described by Medrano et al., 2009. Leaf tissue was harvested at 24, 48, 72, and 96 h post infiltration for further analysis. The optimum time for tissue collection based on Western blot data, was found to be at 48 h post infiltration (data not shown). In subsequent experiments all leaves were collected at 48 h post-infiltration, frozen immediately in liquid nitrogen and stored at 80 C. until further processing. Plants infiltrated with the empty pBIB-kan binary vector (EV) were used as controls for these experiments.
[0094] In order to confirm the expression of the AtGNL in N. benthamiana, Western blot experiments were carried out. Crude extracts were made by grinding frozen tissue in the presence of two volumes of SDS buffer containing 150 mM Tris-HCl pH 6.8, 5 mM EDTA pH 8.0, 30% (v/v) glycerol, 6% (w/v) SDS. The homogenate extract was then centrifuged at 13,000g for 15 min, and the supernatant was recovered. Proteins were separated via SDS-PAGE. Six L of plant extract were mixed with 2.5 L of SDS loading buffer (4) and 1 L of DTT, incubated for 10 min at 70 C. and separated by SDS-PAGE on 10% precast mini-gels (Expedeon, San Diego, Calif.) with a Tris-MOPS buffer. Subsequently, separated proteins were electro blotted onto a nitrocellulose membrane, using transblotting buffer containing: 25 mM Tris base, 192 mM glycine, and 20% methanol. Recombinant AtGNL-6HIS was detected using an anti-HIS (C-term)/AP antibody at a 1:2,000 v/v dilution (Invitrogen, Carlsbad, Calif.) and CDP-start, a chemiluminescent substrate for alkaline phosphatase detection (Roche Diagnostics, Indianapolis, Ind.).
2.2.6. Recombinant AtGNL Purification
[0095] Recombinant AtGNL protein was purified from N. benthamiana leaves. Five grams of leaf tissue were pulverized in liquid nitrogen and proteins were extracted with 10 mL of buffer A (75 mM sodium phosphate dibasic, 25 mM sodium phosphate monobasic, 150 mM NaCl, 10 mM sodium metabisulfite, and 0.6% (v/v) protease inhibitor cocktail, pH 7.4). The extract was then centrifuged at 13,000g for 15 min. The supernatant obtained after centrifugation was loaded onto a nickel affinity column (HIS60 Ni Superflow) and incubated for 1 h at 4 C. Then, the column was washed with 50 mM sodium phosphate pH 7.4, 300 mM NaCl, 40 mM imidazole buffer and the bound proteins were eluted with 250 mM of imidazole. The eluate from the nickel column was concentrated using an AMICON 30K ultra centrifugal filter (Millipore, Billerica, Mass.). Total soluble protein concentration was estimated by the Bradford method (Bradford, 1976) using Coomassie blue G-250 dye (Thermo Scientific) and bovine serum albumin (Pierce, Rockford, Ill.) as a standard. Protein fractions from the purification procedure were separated by SDS-PAGE and the AtGNL was detected by Western blot and silver staining using Pierce Silver Stain Kit (Thermo Scientific).
2.2.7. Recombinant AtGNL Enzyme Assay
[0096] The lactonase activity was assayed in vitro based on the decrease in absorbance (405 nm) of the p-nitrophenol pH indicator that resulted from the enzymatic opening of the lactone ring when
[0097] In order to establish the optimal enzyme activity for AtGNL, several conditions were tested. The optimum concentration for enzyme activity was 30 g per reaction. One mL of the reaction typically contained: 10 mM PIPES pH 6.5, 5 mM
[0098] In order to examine the specificity of the AtGNL enzyme for
2.2.8. High Throughput Phenotyping
[0099] To characterize the phenotype of the over-expresser (L60, L61, L62), knockout lines (SALK_026172 and SALK_011623), and restored lines (L89, L90, L100, L128, L129, L130), under low, normal, and high light conditions a high throughput phenotyping platform (Scanalyzer HTS instrument, Lemnatec, Germany) and the LemnaControl software were used. This instrument is equipped with a robotic arm that holds visible (VIS, a.k.a. RGB), fluorescence (FLUO), and near infrared (NIR) high-resolution cameras. This system empowers unbiased, non-invasive, automated, and effective characterization of plant phenotypes. The cameras in the system are as follows: VIS camera, piA2400-17gc CCD (Basler, Ahrensburg, Germany) with resolution of 24542056 pixels; FLUO camera, scA1600-14gc CCD (Basler, Ahrensburg, Germany) with resolution 16241234 pixels; and NIR camera, Goldeye GIGE P-008 SWIR (Allied Vision Technologies, Stadtroda, Germany) with resolution 320256 pixels and with spectral sensitivity between 900 and 1700 nm.
[0100] In the greenhouse plants were grown in PM-15-13 AIS MIX soil (Lehle-Seeds, Round Rock, Tex.) in Quickpot 15 trays in a greenhouse during Mar. 12-30 2015 in Jonesboro, Ark., USA (latitude 29.4889 and longitude 98.3987). Growth conditions were as follows: 22 C.-26 C. temperature, 16:8 h photoperiod, 55% humidity and three different light conditions: low (35-110 mol/m.sup.2/s), medium (110-350 mol/m.sup.2/s) and high light (350-700 mol/m.sup.2/s). Light intensity was recorded four times per day (9:00 am, 12:00 pm, 3:00 pm, and 6:00 pm) to cover the entire sunlight period.
[0101] Images of AtGNL lines were captured every two days between 16 days and 26 days after germination, to cover the full vegetative growth. Images (5670 images=7 lines15 biological replicates3 light treatment6 times points3 cameras) were analyzed using the LemnaGrid Software. The analysis of the RGB images was done as previously described by Arvidsson et al., (2011). Multiple phenotypic parameters were calculated for each plant including: projected leaf area (cm.sup.2), convex hull area (cm.sup.2), caliper length (a.k.a. rosette diameter, mm) and compactness (measure of the bushiness of the plant). From the RGB images the relative area of the plants displaying normal green color versus the area with detectable yellow color (chlorosis) were calculated. The analysis of the NIR images was similar to the color classification of VIS camera, using the acquired gray-scale images, where high water content corresponds to darker tones while low water corresponds to lighter gray tones. The software used this information to calculate the relative area with low, medium, and high water content. The fluorescence camera acquires red-scale images and in this case the red tones were divided into four equidistant bins, and the software calculated the relative area with zero, low, medium, and high fluorescence. Quantitative data obtained from the images were analyzed.
2.2.9. Photosynthetic Efficiency
[0102] In order to determine photosynthetic efficiency of photosystem II (/II), linear electron flow (LEF), and non-photochemical quenching (NPQt) of the knockout lines (SALK_026172 and SALK_011623), over-expresser (L61), restored lines (L100 and L129), empty vector, and wild type controls growing under low and normal light conditions were analyzed using a MultispeQ. This is a hand held fluorometer developed by the Kramer Laboratory at Michigan State University. Ten biological replicates were chosen randomly at the same time of day for measurements. Data were visualized in an Android tablet (Samsung Galaxy Tab 4) and analyzed in the PhotosynQ website (www.photosynq.org).
2.2.10. PromoterAtGNL:GUS Expression in Arabidopsis thaliana
[0103] To study the expression of At1g56500 in different plant tissues, Arabidopsis thaliana var. Columbia was transformed by the floral dip method (Clough and Bent, 1998) with Agrobacterium tumefaciens GV3101 carrying the construct of interest (pAtGNL:pCAMBIA1305.1). A different set of plants was also transformed with bacteria carrying the empty vector control (pCAMBIA1305.1). T0 seeds were selected with hygromycin and the antibiotic resistant seedlings were transferred to soil and grown to maturity under the above mentioned conditions. The presence of the transgene of interest was established via PCR using gene specific primers, and genomic cDNA as a template. Seeds of the PCR positive plants were sterilized and transferred to a petri dish containing MS media with 20 mg/L hygromycin. Plated seeds were vernalized for 3 days at 4 C. and then transferred to an environmentally controlled chamber. Hygromycin resistant seedlings were transferred to soil and grown until maturity.
[0104] Explants (seedlings, leaves, flowers, and fruits) were cut from plants 4, 8, 12, and 30 days after germination. Next, the explants were incubated in fresh and cold phosphate buffer pH 7.0 with 4% formaldehyde at room temperature for 30 min. The explants were washed several times with cold phosphate buffer for 1 h, then vacuum infiltrated with X-Gluc substrate solution containing: 1 mg 5-bromo-4-chloro-3-indolyl -
2.2.11. Phylogeny
[0105] In order to identify a functional GNL in Arabidopsis thaliana (AtGNL), known GNLs, and putative GNLs from other organisms were compared using the TAIR database (www.arabidopsis.org). The AtGNL was obtained from TAIR database based on highest protein homolog. That sequence was then converted to FASTA format using the EMBL-EBI (www.ebi.ac.uk/tools/stc/readseq/). The MEGA6 software enabled reading and comparing the AtGNL with known and putative GNL sequences (Tamura et al., 2013).
2.2.12. Statistical Analysis
[0106] Data was analyzed by SAS software 9.4 (SAS Institute, 2016). Analysis of variance was carried out by ANOVA procedure. Least squares means (LS-means) were calculated to evaluate AsA content per line, at =0.05.
2.3. Results and Discussion
2.3.1. Purification and Characterization of Recombinant At1g56500
[0107] To demonstrate the GNL activity of Arabidopsis thaliana gluconolactonase in vitro, an N. benthamiana-based transient expression system was used. Plants were vacuum infiltrated with the Agrobacterium tumefaciens LBA4404 strain carrying the At1g56500-6HIS construct. The protein accumulation is highest at 48 h post infiltration (data not shown).
[0108] In order to establish a protein purification protocol for AtGNL, several extraction buffers were tested to identify those that allow recovery of the highest amount of protein.
[0109] Protein fractions from the various purification procedures were separated by SDS-PAGE and AtGNL was detected by Western blot.
[0110] The optimal buffer to recover more recombinant protein was buffer 6.
[0111] In order to establish the optimal concentration for washing and elution buffer, several imidazole concentrations were tested.
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2.3.2. Enzyme Activity of Recombinant At1g56500
[0113] Once an effective purification procedure was developed, the next step was to standardize the assay to test the AtGNL activity. Gluconolactonase (GNL, EC 3.1.1.17) catalyzes the hydrolysis of
[0114] All enzymes work with a range of temperatures specific to the organism from which they are extracted. The effect of temperature on the AtGNL activity was also determined. The activity of the AtGNL enzyme was highest at temperatures between 25 C. and 35 C. The activity drastically decreased when the temperature was increased to 40 C.
[0115] Kondo et al., (2006), reported that the activity of the rat GNL was highest at pH 6.4, while Tarighi et al., (2008) demonstrated that the optimal activity of the P. aeruginosa GNL was at pH 7.2. In contrast, in this study the A. thaliana GNL enzyme had a higher activity at pH 6.0, and the activity decreased by 4-fold when the pH was increased to 6.3 (
[0116] To assess if the AtGNL activity had a preference for a particular divalent ion, various cofactors were tested. Ishikawa et al., (2008) reported that the GNL enzyme from E. gracilis had a higher activity using ZnCl.sub.2 as a cofactor and that this activity decreased around 4-fold when changed to MnCl.sub.2. In these experiments, no significant difference in GNL activity among the tested cofactors was observed (
[0117] Enzyme kinetic analysis was performed with
2.3.3. Characterization of the Phenotype of Gluconolactonase Lines with a Scanalyzer HTS Platform
[0118] Seeds expressing the AtGNL-6HIS:pBIB-kan (AtGNL) and empty pBIB-Kan (control) were screened in the Lorence Laboratory (unpublished). One hundred and thirty primary transformants that were PCR positive were screened to identify high AsA expressers. After four rounds of screening, three lines per group were selected for further analysis: over-expressers (WT+AtGNL), restored 1 (SALK_026172+AtGNL), and restored 2 (SALK_011623+AtGNL).
[0119] Homozygous lines (T5), plants with 100% germination in the presence of antibiotic selection were developed for over-expresser (L60, L61, L62), restored-1 lines (L89, L90, L100), and restored-2 lines (L128, L129, L130).
[0120] The phenotype of these homozygous lines was analyzed using a Scanalyzer HTS instrument under normal conditions as described in materials and methods. Plant images were captured every two days from 16 to 26 days after germination. Representative images of homozygous AtGNL lines and their respective controls are shown in
[0121] Based on these results, foliar AsA level, and the phenotype analysis, further studies were done only with the lines that had the highest foliar AsA content and fastest growth and higher biomass and projected leaf area.
[0122] Over-expresser L61 (OE) and the empty vector control (EV); restored-1 L100 (R-1) and its control SALK_026172 (KO-1), restored-2 L129 (R-2), and its control SALK_011623 (KO-2), and wild type (WT) control were selected for further analysis. First, the effect of low and high light conditions on the selected plants was assessed. Routinely, plants are grown in environmental control chambers. A first attempt to study light effects was accomplished by growing plants in multiple chambers: (315=7 lines15 biological replicates3 light treatments). However, it was very difficult to achieve uniform conditions, with the only variable being the light intensity. To solve this problem, the experiment was conducted in the greenhouse. Two different density meshes were used to diffuse the light to the plants.
[0123] Normal outdoor light on a sunny summer day is around 1000-2000 mol/m.sup.2/s (Mishra et al., 2012) However, because A. thaliana is a spring understory plant, anything above 350 mol/m.sup.2/s is considered high light.
[0124] Fifty mg of leaf tissue were collected at developmental stage 6.3 as defined by Boyes et al., (2001) between 9:00-11:00 am. Reduced, oxidized, and total AsA were measured via an enzyme-based method as previously described (Haroldsen et al., 2011). The results indicate that the over-expresser and the restored lines had a higher foliar AsA than their respective controls growing under similar conditions.
[0125] The projected leaf area results showed the same trend, where over-expressers and restored lines were bigger than their controls, with KO-1 being the worst performer at all light conditions tested.
[0126] In planta chlorophyll, fluorescence measured with the fluorescence camera can serve as an indicator of whether the plants are under stress. These plants were grown under the normal light regime. High fluorescence in plants is opposite of high photosynthetic efficiency (Lichtenthaler, 1988).
2.3.4. Photosynthetic Efficiency of AtGNL Lines Under Low and Normal Light Conditions
[0127] Genes involved in the AsA metabolic network have been identified that were down and up regulated in response to light.
[0128] Photosynthetic efficiency is the fraction of light (photons) that plants obtain from the sun to convert into chemical energy during photosynthesis. Under normal light conditions there was no penalty in the photosynthetic efficiency of plants lacking AtGNL expression.
[0129] In addition to photosynthetic efficiency two other parameters related to photosynthesis were measured: linear electron flow (LEF) and non-photochemical quenching (NPQt). The linear electron flow rate (LEF) has a direct correlation to photosynthetic efficiency. LEF facilitates the movement of H.sup.+ ions across the thylakoid membrane to create an electrochemical gradient that is used by ATP-synthase to produce energy (ATP).
[0130] Plants exhibit phenotypic plasticity and respond to differences in environmental conditions by acclimation. In a recent study, Arabidopsis plants grown under field conditions were compared with plants grown indoors. Indoor-grown plants had larger leaves, modified leaf shapes and longer petioles and less NPQt, while field-grown plants had a high capacity to perform state transitions (Mishra et al., 2012). If photosynthesis is inefficient, excess light energy is dissipated as heat to avoid damaging the photosynthetic apparatus. When plants are under abiotic stress, such as low light intensity, the photosynthetic efficiency and the NPQt are opposite. The KO-1 line had high NPQt, indicating inefficient photosynthesis at both low and normal light conditions.
2.3.5. Temporal and Spatial Expression of AtGNL Using the GUS Reporter Gene
[0131] To examine the expression of AtGNL within tissues, ten transgenic plants expressing GUS driven by the AtGNL promoter (pAt1g56500:pCAMBIA1305.1) and empty vector pCAMBIA1305.1 (control) were generated. In the empty vector the GUS-PLUS gene is under the control of the 35S constitutive promoter.
[0132] AtGNL, empty vector and wild type plants were treated with the X-Gluc substrate. As illustrated in
2.3.6. Phylogenetic Three of Putative Plant Gluconolactonases
[0133] A phylogenetic tree for At1g56500 (AtGNL) was generated. At1g56500 (AtGNL) was compared with known GNLs and with putative GNLs for many other organisms. After all protein sequences with significant sequence similarity to AtGNL were retrieved, the protein sequences were aligned using the MEGA6 software (Tamura et al., 2013). Only the sequences that had between 90 and 100% of identity with the AtGNL protein of interest were included in this analysis. To develop an updated phylogenetic tree, a BLASTP search was done against the Arabidopsis protein database (www.arabidopsis.org) using the A. thaliana gluconolactonase At1g56500 (AtGNL) protein sequence. This enzyme has been characterized in A. niger (Ogawa et al., 2002), E. gracillis (Ishikawa et al., 2008), P. aeruginosa (Tarighi et al., 2008), R. norvegicus (Kondo et al., 2006), Z. mobilis (Pedruzzi et al., 2007), and now also in Arabidopsis (this work). The BLASTP result revealed the presence of 37 candidates in different organisms with 90-100% identity to the AtGNL query.
[0134] The constitutive expression of the gene of interest (GNL) leads to higher seed yield in plants, such as Arabidopsis. Such higher seed yield is shown in
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2.4. Conclusions
[0137] The evidence presented in this document allows the following conclusions:
[0138] We successfully developed a purification protocol for AtGNL recombinant protein, and characterized this enzyme in detail including temperature, pH, cofactor requirement, and substrate concentration preferences, as well as its kinetic parameters.
[0139] The AtGNL enzyme had highest activity at temperatures between 25 C. to 35 C., while the bacteria P. aeruginosa has optimal temperature activity at 24 C. The optimum temperature of the AtGNL is consistent with the preferred growth temperature of Arabidopsis.
[0140] The optimal pH for AtGNL enzymatic activity was 6.0, and this activity decreased 4 when the pH was slightly increased (pH 6.3). In contrast, mammalian GNLs isolated from rats, mice, and humans have an optimal activity at pH 6.4. Our result is consistent with the prevalent pH in the chloroplasts (Alberts et al., 2002), the organelle where this protein resides.
[0141] The enzyme characterized in this work is very specific with the
[0142] GNL enzymes require a divalent cofactor for activity. The AtGNL displayed similar activity when incubated with MnCl.sub.2, MgCl.sub.2, or ZnCl.sub.2. In contrast, other GNLs such as the E. gracilis isoform prefer ZnCl.sub.2 and activity dropped significantly with other cofactors (Ishikawa et al., 2008). The ability of AtGNL to work with MnCl.sub.2 is consistent with an enzyme that is active in the chloroplasts, as Mn is abundant in that organelle (Alberts et al., 2002).
[0143] Based on optimum pH, optimum T, and kinetic parameters of the known GNLs the one that is the most similar to the one here characterized is the G. oxydans GNL.
[0144] After demonstrating GNL enzyme activity in vitro, the present invention provides a method of controlling the role of this enzyme in AsA biosynthesis in planta. As shown in
[0145] Previous results in the Lorence Laboratory obtained using manual phenotyping showed that plants with high AsA accumulate more biomass, delayed aging and are tolerant to abiotic stresses (Lisko et al., 2013). To determine if the AtGNL lines display differences in growth rate and biomass accumulation, a powerful high throughput phenotyping instrument was used to characterize the phenotype of lines with normal (WT), low (knockouts) and high (over-expresser and restores lines) GNL expression. A clear penalty in the growth rate and biomass accumulation of the knockouts exists. The restored lines grew as well or better than the controls. This result indicates that AtGNL is key to the plant to support normal growth and development.
[0146] Based on the fact that AtGNL is a chloroplastic enzyme (
[0147] Detailed characterization of the phenotype of the AtGNL lines under normal, low and high light conditions showed that over-expressers and restored lines grew better and accumulated more biomass than their respective controls (
[0148] Plant growth and yield depend on plants maintaining high photosynthetic efficiency. To determine if the stunted growth we measured in the knockouts is due to deficiencies in photosynthesis, measurements were done with a hand-held fluorometer. Interestingly, results show that over-expressers and restored lines displayed enhanced photosynthesis compared to controls, while KO-1 and KO-2 have decreased LEF and therefore decreased ability to make ATP. Overall KO-1 display the poorest performance for all photosynthetic parameters here measured including non-photochemical quenching.
[0149] In order to analyze the expression of the AtGNL in plants tissues we developed transgenic A. thaliana lines expressing the GUS-PLUS reporter gene under the control of the AtGNL promoter (pAtGNL). The results show that AtGNL is expressed in all tissues examined: seedlings, leaves, stems, and siliques, except roots. This expression pattern suggests that AtGNL is a constitutive enzyme.
[0150] AtGNL is an important enzyme to sustain sufficient AsA content and to maintain plant growth and efficient photosynthesis. In order to gain insights about the conservation of this enzyme in evolution, a phylogenetic tree of known and putative GNLs was developed (
[0151] From the foregoing, it will be seen that the present invention is one well adapted to obtain all the ends and objects herein set forth, together with other advantages which are inherent to the structure.
[0152] It will be understood that certain features and sub-combinations are of utility and may be employed without reference to other features and sub-combinations. This is contemplated by and is within the scope of the claims.
[0153] As many possible embodiments may be made of the invention without departing from the scope thereof, it is to be understood that all matter herein set forth or shown in the accompanying drawings is to be interpreted as illustrative and not in a limiting sense.