MICROFLUIDIC DEVICE FOR DETECTION OF ANALYTES
20230037522 · 2023-02-09
Inventors
- Robert Forster (Dublin, IE)
- Elaine Spain (Dublin, IE)
- Kellie Adamson (Swords, IE)
- Eadaoin Carthy (Paulstown, IE)
- David Boyle (Dublin, IE)
Cpc classification
B01L2400/04
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502738
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502723
PERFORMING OPERATIONS; TRANSPORTING
B01L3/50273
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502715
PERFORMING OPERATIONS; TRANSPORTING
B01L2300/161
PERFORMING OPERATIONS; TRANSPORTING
B01L2200/00
PERFORMING OPERATIONS; TRANSPORTING
B01L2400/088
PERFORMING OPERATIONS; TRANSPORTING
B01L2200/10
PERFORMING OPERATIONS; TRANSPORTING
B01L2200/0668
PERFORMING OPERATIONS; TRANSPORTING
B01L2200/0684
PERFORMING OPERATIONS; TRANSPORTING
B01L2400/0677
PERFORMING OPERATIONS; TRANSPORTING
G01N33/577
PHYSICS
B01L2300/087
PERFORMING OPERATIONS; TRANSPORTING
G01N35/00069
PHYSICS
B01L3/502761
PERFORMING OPERATIONS; TRANSPORTING
B01L2200/0621
PERFORMING OPERATIONS; TRANSPORTING
B01L3/502746
PERFORMING OPERATIONS; TRANSPORTING
International classification
B01L3/00
PERFORMING OPERATIONS; TRANSPORTING
G01N33/543
PHYSICS
G01N33/577
PHYSICS
Abstract
A microfluidic device for detection of an analyte in a fluid is described. The microfluidic device comprises a substrate having a first surface defining entrances to one or more chambers defined in the substrate, surfaces of the chambers defining a second surface of the substrate, the first surface being modified for selective targeting and capture of at least one analyte to operably effect a blocking of the entrance to at least one of the chambers, and wherein a response characteristic of the microfluidic device is operably varied by the blocking of the entrance to the at least one of the chambers, thereby providing an indication of the presence of the analyte within the fluid.
Claims
1.-34. (canceled)
35. A microfluidic device for detection of at least one particle within a fluid, the device comprising a sample chamber for receiving the fluid, a detection chamber, and a waste reservoir, each of the sample chamber, detection chamber and waste reservoir being in fluid communication with one another such that the received fluid can pass from the sample chamber through the detection chamber to the waste reservoir, the microfluidic device further comprising a substrate having a first surface defining entrances to a plurality of chambers defined in the substrate, the plurality of chambers forming a microcavity array within the detection chamber, surfaces of the chambers defining a second surface of the substrate, at least one of the first surface or the second surface being configured to selectively target and capture the at least one particle and thereby operably effect a blocking of the entrance to at least one of the chambers by plugging an inside of the chamber or by immobilizing the at least one particle across an opening of the chamber, the device further comprising an electrode arrangement configured to provide an electrochemical output response characteristic and wherein an electrochemical output response characteristic of the microfluidic device as provided by the electrode arrangement is operably varied by the blocking of the entrance to the at least one of the chambers by the particle, thereby providing an indication of the presence of an analyte within the fluid.
36. A microfluidic device according to claim 35 wherein the first surface is selectively modified to inhibit non-specific capture of the at least one particle.
37. A microfluidic device according to claim 35 wherein the particle comprises a pathogen, cancer cell, or other rare cell.
38. A microfluidic device according to claim 35, wherein the first surface of said substrate is modified by immobilising a capture agent on said surface.
39. A microfluidic device according to claim 38, wherein the capture agent is selected from the group consisting of antibodies, protein, nucleic acid or synthetic receptor.
40. A microfluidic device according to claim 38 wherein said capture agent is immobilised on the first surface by means of wet chemical deposition, cold plasma deposition or soft stamping onto said surface.
41. A microfluidic device according to claim 38 wherein the capture agent is located on said first surface around an entrance of said one or more chambers.
42. A microfluidic device according to claim 35 wherein surfaces of the chambers defined in the substrate define a curved surface.
43. A microfluidic device according to claim 35 wherein the one or more chambers defined in the substrate have a diameter or width in the range 100 nm to 10 μm.
44. A microfluidic device according to claim 35 wherein the one or more chambers have a depth between 0.05 and 0.95 times a diameter of the chamber.
45. A microfluidic device according to claim 44 wherein individual chambers of the microcavity array have different sizes.
46. A microfluidic device according to claim 35 wherein a size and shape of said one or more chambers is selected to match that of said target particle.
47. A microfluidic device according to claim 35 wherein the chambers of the microcavity array are laterally spaced such that a spacing between the chambers is optimised for the selective capture of the particle to be detected.
48. A microfluidic device according to claim 47 wherein a separation or pitch between the chambers is between 0 and 100 times a diameter or width of the chamber.
49. A microfluidic device according to claim 37, wherein the particle comprises a pathogen selected from the group consisting of gram positive bacteria, gram negative bacteria and fungi.
50. A microfluidic device according to claim 35, wherein an internal surface of each chamber is modified for detection of a molecular marker such that an electrochemical output response characteristic of the microfluidic device is operably varied by the binding of a released marker into at least one of the chambers thereby providing an indication of the properties of the particle captured.
51. A microfluidic device according to claim 50, wherein the molecular marker comprises a small molecule, nucleic acid or a protein.
52. A microfluidic device according to claim 50 wherein the internal surface of each chamber is functionalised with a capture agent.
53. A microfluidic device according to claim 52 wherein the capture agent is selected from the group consisting of DNA or RNA capture strands, antibodies or a synthetic capture agent.
54. A microfluidic device according to claim 50 wherein the electrochemical output response characteristic of the microfluidic device is operably varied upon capture of an analyte followed by marker release thereby indicating the presence of an analyte within the fluid.
55. A microfluidic device according to claim 50 wherein the electrochemical output response comprises a changed electrochemical impedance signal which provides an indication of a pathogen load within the fluid.
56. A microfluidic device according to claim 35 wherein the fluid is selected from the group consisting of a liquid sample, a whole blood sample, urine, saliva, blood plasma or other fraction, interstitial fluid, cerebrospinal fluid, liquidised food sample or extracted from a surface swab.
57. A microfluidic device according to claim 35 wherein said analyte is captured and detected within a time period in the range 1 to 60 minutes.
58. A microfluidic device according to claim 57 wherein the time period for capture is greater than the time period for subsequent detection of a captured pathogen.
59. A microfluidic device according to claim 35 wherein the device can detect cells at concentrations of about 2 cells/ml.
60. A method of detecting an analyte in a fluid comprising the use of the microfluidic device according to claim 35.
61. A method of detecting an analyte in a fluid sample, the method comprising: (i) introducing a sample to the microfluidic device of claim 35, (ii) inducing a fluid flow, (iii) capturing an analyte; and (iv) detecting the presence of the analyte in the fluid by measuring a variation in a response characteristic of the microfluidic device.
62. A method according to claim 61 further comprising measuring the release of a marker from the captured entity.
63. A method according to claim 61 wherein the analyte comprises a pathogen, cell, vesicle or exosome.
64. A method according to claim 61, wherein the electrochemical output response characteristic of the microfluidic device is operably varied upon capture of an analyte in the fluid.
65. A method according to claim 64 wherein the electrochemical output response comprises an impedance signal which is operably varied upon capture of the analyte.
66. A microfluidic disc comprising a microfluidic device according to claim 35.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0067] The present application will now be described with reference to the accompanying drawings in which:
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DETAILED DESCRIPTION
[0093] The present teaching provides a microfluidic device and method for the rapid detection of an analyte, for example, pathogens in a fluid sample. In particular, the microfluidic device described herein allows for the highly efficient capture and detection of bacterial and fungal pathogens in a fluid sample, for example a whole blood sample.
[0094] The efficiency of the device according to the present teaching at capturing and detecting an analyte as well as inhibiting deleterious non-specific adsorption is achieved through a combined effect of several features of the device. Such features include the size and shape of the chambers or cavities formed on the substrate being matched to the attributes of the target analyte. The shape and size of the cavity may be selected to match that of the target analyte. The lateral spacing of the chambers (cavities) is optimised so as to promote analyte binding while inhibiting non-specific binding. Furthermore, the capture agent may be located around the openings of, or entrances to, the chambers to promote site specific binding of the analyte across the chambers. The analyte is therefore immobilised or “locked-in”. The surface coverage of the capture agent is optimised. The surface charge is also controlled so as to create an electrostatic attraction for the analyte or electrostatic repulsion of an interference.
[0095] It will be appreciated that the diameter of the chamber (cavity) and the size of the analyte will influence whether the captured analyte is bound or located across the entrance to the chamber (cavity) or inside the chamber (cavity). For example, where the diameter of the cavity is smaller than the diameter of the analyte, the analyte will bind across the cavity. In cases where the size of the cavity is larger than the size of the analyte, topography influences dominate, whereby the cells, for example, while specifically attracted to the antibody-modified surface initially, prefer to enter inside the cavity as it has a larger surface area.
[0096] Furthermore, in accordance with the device and method described herein the flow profile delivering the sample to the surface is controlled in space and time. The rate of flow of the sample across the device is controlled by the architecture of the microchannels. The geometry of the incubation chamber(s) on the disc is selected to maximise contact of the sample with the capture surface of the substrate.
[0097] These effects combine synergistically in unexpected ways and produce enhanced yields for the capture of cells compared to smooth surfaces due to a synergistic effect of the capture agents and nanostructures.
[0098] The terms chamber and cavity are used interchangeably herein to refer to the openings in the first surface (capture surface) of the substrate. The chambers or cavities form a microcavity array.
[0099] In a first implementation, the microfluidic device comprises an array of micro-cavities and is advantageously used to selectively detect gram positive, gram negative and fungal species in a fluid sample with little cross reactivity. A device according to the present teaching enables the detection of a pathogen within a fluid sample. It may enable the determination of the type of pathogen e.g. whether it is gram positive, gram negative or a fungal species, typically within a time frame of about 1 hour from depositing a sample on the device to providing an answer. The device can therefore be used in point of care diagnosis and is particularly efficient for testing patients presenting with suspected sepsis. A significant advantage is that it can detect pathogens at concentrations of <10 CFU/ml.
[0100] The microfluidic device according to a first implementation of the present teaching is described herein as a binary response device. A characteristic of the device is that it provides a yes/no indication of the presence of captured pathogens.
[0101] In a further implementation of the present teaching, the device is configured to identify a pathogen subtype and determine antibiotic resistance.
[0102] The microcavity arrays of the device according to the present teaching can be manufactured in a number of ways. Two exemplary methods of manufacture that may be used are electrodeposition and photolithography and specific examples of each of these two techniques will now be described.
1. Cavity Array Fabrication: Electrodeposition (Protocol A)
[0103] This method presents the ability to fabricate a range of ordered spherical segment metal cavity arrays in gold, other metals and conducting polymers (silver and cobalt arrays can also be produced) formed by electrodeposition via a micro- or nano-sphere lithographic fabrication process.
Polystyrene Sphere Monolayer Formation on the Gold Substrate
[0104] A 10 wt % stock solution of commercially available polystyrene (PS) latex spheres (Bangs Laboratory, USA) of the desired diameter size (25 nm to 21 μm diameter range available) are diluted to approximately 1 wt % solution in water. A thin layer of the spheres 100 is deposited onto a conductive silicon wafer coated with 1000 Å gold (Au) 525 μm thickness over a 50 Å titanium adhesion layer (Platypus Technologies, USA) and evaporated over night at room temperature.
Electrodeposition
[0105] Electrodeposition is then carried out as follows: electrolyte solutions are degassed with nitrogen for 30 minutes prior to deposition. A gold film of controlled thickness is electrochemically deposited using commercially obtained aqueous gold plating solution. A potential (V) versus an Ag/AgCl (sat. KCl) electrode is applied. With reference to
Selective Modification of the Array
[0106] One of the prime advantages of protocol A is the ability to selectively modify the surface. For example, using such a protocol it is possible for either the whole array to be modified with a single surface active capture agent, e.g., a cell capture antibody, or for the top surface and cavity wall interior to be selectively modified with different species. To chemically modify the whole surface following removal of the polystyrene (PS) spheres via immersion in Tetrahydrofuran (THF) for 3 hours, the whole cavity array (both top surface and cavity walls) may be immersed in a solution of the desired capture agent overnight at room temperature. Selective modification of the top surface and cavity walls with different thiols is achieved via a two-step adsorption process, presented in
[0107] It will be appreciated that this method is particularly suited for the fabrication of cell adhesion platforms in that, for example, a suitable surface active ligand can be used to tailor the surface in terms of blocking non-specific binding which provides the ability to control the positioning of adhered cells. In an alternative to this method, and as described below, it is possible to provide for mass production of optimised microcavity arrays. Different sized cavities can be readily fabricated in different regions of the device for each target pathogen size.
2. Cavity Array Mass Production: Photolithography (Protocol B)
[0108]
[0109]
[0110] As shown in
[0111] With reference to
[0112] The photoresist used in the method of manufacture of the device according to the present teaching is SU-8 3005, purchased from A-Gas Electronic Materials. The skilled person will appreciate that other suitable commercially available photoresists could be used. SU-8 is a negative resist, formed by dissolving SU-8 resin in an organic solvent and adding a photo-initiator. When exposed to UV radiation, the photo-initiator decomposes and forms an acid, which catalyses cross-linking in the resist. This reaction is further amplified by the application of heat, where the organic solvent evaporates from the resist. The cross-linked resist therefore becomes less soluble in the developing solvent. In short, areas exposed to UV remain on the substrate after development, and areas blocked from the light are washed away revealing the underlying gold substrate at the base of the cavity array.
Spin Coating
[0113] While a variety of different techniques may be used to provide a coating, the present inventors have concluded that spin coating is the quickest and easiest method to coat the substrate with resist. The substrate is held on a spinning vacuum chuck, and a measure of resist is deposited in the middle. The wafer is then spun at 500 rpm for ten seconds, to spread the resist evenly over the silicon, and then at higher rpm to achieve a specific film thickness.
[0114] In order to achieve 2 μm deep cavities, a 2 μm thick layer of photoresist is required. Layer thickness is determined by the spin speed in rpm, spin time, and the viscosity of the photoresist, and see
Soft Bake
[0115] After spin coating, a soft bake is carried out. During the soft bake, a small amount of the organic solvent in the resist evaporates, causing the resist film to solidify slightly, making it more viscous. This is beneficial, especially during contact lithography, where the mask is in contact with the substrate, as residue from the resist is not left on the mask, thus increasing the lifetime of the mask.
[0116] Soft baking is generally carried out at 95° C. for 3 minutes for films under 10 μm thick. Baking at too high a temperature, or for too long, may introduce cracks and fissures into the resist film. Soft baking can be performed in a conventional oven, but can cause the solvent to evaporate from the top surface of the resist film, forming a ‘skin’, which prevents the underlying solvent from escaping. Therefore, it is preferable to perform the soft bake on a vacuumed hot plate, which is faster, easier to control, and promotes even evaporation of the solvent.
Exposure and Post Exposure Bake
[0117] After soft baking, the wafer is transferred to an illumination/alignment device. This device has a high magnification camera to align the wafer with the mask features with high accuracy. It will be appreciated that this is only really necessary for multi-layer lithography i.e. creating features of different heights on the same wafer. In the case of the device according to the present teaching, the cavities require only single layer lithography, and so alignment isn't as crucially important. The wafer is held on a vacuum stage, and the mask is bolted over it. The stage position is adjustable in the X, Y and Z directions, and can also be rotated to align with the mask. The stage is then moved under the UV lamp, and the mask pattern is transferred into the photoresist.
[0118] Optimum wavelengths for photolithography range from the deep UV (150-300 nm) to near UV (350-500 nm), depending on the application and the resist used. SU-8 is most commonly exposed between 350 and 400 nm, with 365 nm (i-line) being the optimum wavelength. For film thicknesses under 10 μm, the optimum exposure energy is 100-200 mJ/cm.sup.2. The adhesion strength of the resist varies depending on the substrate used. SU-8 has relatively poor adhesion strength on gold, and requires higher exposure doses. In the case of the present teaching the resist is exposed for 10 seconds on silicon wafers, and for 20 to 25 seconds on gold wafers.
[0119] As mentioned earlier, the UV radiation causes the photo initiator in the resist to decompose to hexafluoroantimonic acid, which causes cross-linking reactions in the exposed regions of the resist. While these reactions take place at room temperature, the reaction rate is greatly increased with heat. Typical post exposure bake temperatures range from 60-100° C. Longer bakes at lower temperatures are more beneficial, as rapid temperature jumps can cause thermal stresses and cracks in the resist. In the case of the method of manufacture for the device according to the present teaching, the post exposure bake is generally carried out at 65° C. for 1 minute, followed by 2 minutes at 95° C. As the cross linking is completed, an image of the mask features appears in the resist during the post exposure bake.
Development
[0120] Development is the dissolution and removal of the un-crosslinked resist, to leave the desired topography. In the method of manufacture for the device according to the present teaching ‘wet’ development is used, which involves submerging the resist in developer solvent. The solvent used herein is MicroPosit EC Solvent (2-methoxy-1-methylethyl acetate). This method relies on the differences in molecular weight between the crosslinked and the un-crosslinked resist. Unexposed, and therefore un-crosslinked regions of the resist are washed away. The liquid is kept in constant agitation, in order to continually feed fresh developer over the resist, and to remove resist from small cavities or channels. The process is greatly aided by the use of a sonic bath, or by placing on an oscillating platform. Typically, the cavities are developed for 1-3 minutes, usually in a sonic bath. After development, the finished wafer is cleaned with isopropanol and deionised water, and dried with nitrogen.
Hard Bake
[0121] The final (and optional) stage is a hard bake. This is to remove any residual organic solvent in the resist, and to anneal the resist surface which may have been weakened during development. The glass transition temperature of fully crosslinked SU-8 is in the region of 200° C. Accordingly, hard baking can be carried out at higher temperatures. In accordance with the method described herein, the wafers may be hard baked at 150° C., for 10 to 15 minutes. Hard baking is not so important for one-use electrode cavities, but for wafers being used for casting or embossing, where structural integrity and wafer lifetime are important, a hard bake is critical.
[0122] With reference to
3. Modification of the Cavity Array Surface
[0123] The capture antibodies or capture protein may be immobilised on the first planar surface by means of stamping onto said planar surface. The top surface of the array (first planar surface of the substrate) can be modified by stamping with capture antibodies or capture protein. For example, the top surface of the array can be stamped with gram positive antibody, gram negative antibody or yeast protein or an antibody that selectively captures a pathogen sub-type.
[0124] As the top surface of the array is not gold in this example, microcontact printing (μCP) is employed to modify the top surface of the array (via antibody adsorption). μCP is a form of soft lithography that uses the relief patterns on a master polydimethylsiloxane (PDMS) stamp to form patterns on the surface of a substrate through conformal contacts. It will be appreciated by the person skilled in the art that other suitable stamping materials could be used.
Preparing the Master
[0125] The master is prepared using the photolithography technique. The master is created on silicon. Photoresist is applied to the surface (500 rpm initially for 10 seconds then increased to 1000 rpm for 30 seconds) and patterned by a photomask and UV light. The master is then baked (95° C. for 3 minutes), developed (2 minutes with sonication) and cleaned before use. The photoresist is very stable and the wafer master can be reused numerous times as a topographic template for the stamp.
Creating the PDMS Stamp
[0126] A schematic for the fabrication process of the PDMS stamp used to modify the top surface of the photoresist cavity array is presented in
Surface Modification: Antibody Stamping
[0127] The desired antibody (100 μg/ml stock concentration) is placed in contact with the PDMS stamp for 15 minutes at room temperature. Suitable antibodies for use include GTX40307 Gram Negative Endotoxin [308] Mouse Monoclonal Antibody, GTX36804 Gram positive bacteria LTA [3801] Mouse Monoclonal Antibody and Native Candida Rugose Cholesterol Esterase Purified Protein. The antibody solution is removed and the stamp with adsorbed antibody and excess solution removed with a nitrogen stream. The antibody adsorbed stamp is then placed onto the photolithography array surface and pressed lightly to ensure adequate contact occurs between the surface and stamp. The stamp is incubated with the array for 15 minutes at room temperature. The stamp is peeled away from the surface and antibody is now adsorbed onto the top surface of the cavity array substrate. The exposed gold at the base of the cavity array may be modified with a thiol of choice. Where thiol modification is not required, the gold is blocked with thiolated PEG (polyethylene glycol) to reduce non-specific binding. The antibody modified array is incubated with a 1 mM solution of thiolated PEG.sub.8-COOH overnight at room temperature. Finally, the whole array is incubated with a 1% BSA (bovine serum albumin) solution for 1 hour at room temperature to inhibit any remaining potential non-specific adhesion to the surface. The array is then inserted into the binary response device for bacteria capture and electrochemical detection.
[0128] With reference to
[0129] The top surface of the cavity array can also be modified by stamping with capture antibodies or capture protein and a confocal image of the stamp with Gram negative antibodies immobilised on a cavity array (produced by photolithography) is shown in
[0130] The microfluidic device such as described herein can be used as a binary response device or as a multiplex device. The binary response device provides an indication of the presence or otherwise of an analyte; that is, a “yes/no” binary response, in a sample, for example a whole blood sample. The multiplex device as described herein provides the capability of detecting the particular type of analyte. The multiplex device can be used following an initial diagnosis of the type of pathogen (e.g. gram positive, gram negative or a yeast pathogen). It provides more granular or detailed information on a subtype of analyte.
4. Binary Response Device Centrifugal Platform Protocol
General Disc Design
[0131] The design of the Binary response disc is carried out using the SolidWorks Premium 2015 program. This is a solid modelling computer aided design (CAD) program. A 3D model of the disc is initially drawn. Different depths of the disc's features lie at different depths within the model structure. Overall, nine different layers are extracted from the model design. Each layer must be opened in another CAD program labelled AutoCAD. Here, each of the polylines is converted to continuous lines for an ease of fabrication at a later stage. Each layer is then saved as a DXF file.
[0132] In one configuration the substrate may be fabricated from one or more layers of Poly(methyl methacrylate) (PMMA). Where a plurality of layers is provided, a base layer of PMMA may be fabricated so as to receive and locate working gold electrodes. Other PMMA layers may be coupled to this base layer to form the ultimate multilayer structure.
5. Binary Response Device
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[0134] The Binary response disc 200 in this exemplary arrangement contains three separate testing sites 202. The structure is mirrored to allow for the sites to be completely identical. The site contains a sample reservoir 203, wash step reservoir 204 and a PBS reservoir 205. Vents are located at the top of the reservoirs to allow for ease of loading of the device.
[0135] A labelled testing site 202 on the binary response device is presented in
[0141] It will be appreciated that the antibodies may be placed in any order provided the arrangement in all circumstances is as follows: (Left) Reference electrode, (centre) Working electrode and (right) Counter electrode.
[0142] It will also be appreciated that other metals and conducting polymers may be used as counter or references (examples include but are not limited to silver, carbon and silicon).
[0143] The following is an example of a method of capturing and detecting an analyte using the microfluidic device according to the present teaching.
[0144] With reference to
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[0146] The design of the device shown in
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[0148] The first layer 231 of the device is comprised of PMMA containing an array of holes acting as entry points for loading samples and reagents into the lower layers of the device. These holes are also used as venting mechanisms to ensure fluid flow throughout the system.
[0149] The second layer 232 of the device contains an assortment of microchannels necessary for the routing of liquid between specific reservoirs. These microchannels also act as a means of flow control, where channels are connected to air and pressure chambers. The height of the microchannels is provided by the Pressure Sensitive Adhesive (PSA).
[0150] The third layer 233 of the device is comprised of 2 mm PMMA which has an assortment of reservoirs which are required for the storage of the sample, reagents and the waste. This layer also gives depth to the device which is needed for the volume of liquids used.
[0151] The fourth layer 234 is a secondary PSA layer which contains access points to the dissolvable film (DF) tab once routing of the liquid to their position is activated. This layer also contains air passages needed for air circulation and air compression to aid the control of burst frequency desired for the DF tabs.
[0152] The fifth layer 235 is mirrored against layer 4, where the only difference lies with a section for the DF tab placement and securement.
[0153] The sixth layer 236 of the device is the third PMMA layer which contains reservoirs for storage of the sample, reagent and waste. Once activated, this layer provides passage for liquid travelling from the microchannels, through the DF tab towards lower channels.
[0154] The seventh layer 237 contains microchannels for the displacement of liquid from the reagent storage chambers to the detection chamber, and finally the waste chamber.
[0155] The eighth layer 238 of the device is a PSA layer which only exposes the functionalised area of the electrodes whilst also exposes the top of the counter and reference electrodes which is vital for impedance detection within the device.
[0156] The ninth layer 239 of the device is the final section of the device which contains 3 sets of the 5 electrode configuration. These functionalised electrodes act as both the capture site for pathogens as well as a site for impedance detection.
[0157] An overview of an example of the device 200 is shown in
[0158] The binary response disc 200 in this exemplary arrangement contains three separate testing sites 202. These structures are a triplicate circular pattern for a mirrored response during testing. The device 200 encloses five main reservoir sections for fluid containment. Each site contains a sample chamber 203, detection chamber 206, a wash-solution chamber 604, an electrolyte solution chamber 605 and a waste reservoir 207.
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[0165] It will be appreciated that the antibodies may be placed in any order provided the arrangement in all circumstances is as follows:
[0166] (Left) Reference electrode, (centre) Working electrode and (right) Counter electrode.
[0167] Vents 214 are located at the top of each reservoir section for ease of loading samples and reagents whilst allowing the displacement of air within the device for ease of flow for each fluidic component. This venting system allows ease of loading of the sample into sample chamber 203, wash-solution chamber 604 and electrolyte-solution chamber 605.
[0168] With reference to
[0169] DF (dissolvable film) tabs 210 are located beneath their corresponding reservoirs (or chambers). These tabs are located on layer 5, 235, of the device 200 and are positioned above channels 211, found on layer 7, 237. Channels 211 allow for full dislocation of liquids from reservoirs 604 and 605 to chamber 206 once the corresponding DF tabs have been actuated.
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[0172] Wash solution is relocated from chamber 604 to detection chamber 206 via a lower channel as shown in
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6. Multiplex Device: Type A
[0174] In a modification to the device herein before described, a detection system comprising a plurality of chambers that can be blocked by different analytes may be provided. Such an arrangement may be provided by surface treating different regions of the detection system so as to selectively target different analytes. In this way, a first predetermined location on the disc will include a plurality of chambers that will be blocked by a first set of analytes but not by a second set. Correspondingly, a different predetermined location on the disc will be blocked by a second set of analytes but not by the first set. Such a device may be considered a multiplex device 300 and an example is shown in
[0175] In these examples the device 300 is comprised solely of one testing area 301. This device consists of 4 distinct electrode incubation chambers 302. Each incubation chamber 302 is functionalized with a specific capture antibody. Use of such a multiplex device 300 advantageously follows an initial diagnosis, for example a bacteria diagnosis from a Binary response type device (Gram positive, Gram negative or yeast determination) as described above. Using the discrimination offered by the multiplex device provides the capability of determining the specifics of the bacteria subspecies for either Gram positive or Gram negative pathogen containing sample.
[0176] For example, a 2 ml whole blood sample is loaded into the blood chamber 303. The blood is loaded and a spin rate applied. The blood separation can take from 6-9 minutes to separate. Once ready, the spin rate of the disc is increased to wet and break the blood separation chamber's DF tab. The spin rate is reduced to allow the plasma to fill up each of the chambers and allow for a slow steady flow through the four electrode incubation chambers 302. A long microchannel connects the final electrode chamber to the waste chamber 304. The flow rate of the plasma into the waste chamber is controlled using a known width of channel. Increasing the size of this channel increases the exit flow rate of the sample. The incubation time varies from 7-9 minutes. A DF tab is located in the waste chamber. Once burst, the lower-channel air pressure is released and the wash chamber's DF tab is now in a burstable state. The spin rate is increased to burst the wash buffer reservoir 305 located directly above the electrode chambers. A series of lower channels links the wash buffer reservoir 305 to the electrode chambers 302. The spin rate is reduced and the wash buffer flows through each of the electrode chambers into the waste chamber 304. The device is removed from the spin stand mechanism where it is then attached to a potentiostat for analysis.
[0177] With reference to
[0178] A: Working electrode: antibody of choice
[0179] B: Working electrode: antibody of choice
[0180] C: Working electrode: antibody of choice
[0181] D: Working electrode: antibody of choice
[0182] The arrangement in all circumstances is as follows:
[0183] (Left) Reference electrode, (centre) Working electrode and (right) Counter electrode.
7. Multiplex Stage 2 Device: Type B
[0184] In this example, the Multiplex device 400 is comprised solely of one testing area. For example, following bacteria diagnosis from the Binary response device determination (Gram positive, Gram negative or yeast), the multiplex device provides the capability of determining the bacteria subspecies for either a Gram positive or Gram negative pathogen containing sample. With reference to
TABLE-US-00001 TABLE 1 Electrode Chamber Gram + Bacteria 1 Clostridium periringens 2 Enterococcus casseliflavus 3 Enterococcus faecalis 4 Enterococcus faecium 5 Enterococcus gallinarum 6 Listeria monocytogenes 7 Propionbacterium acnes 8 Staphylococcus aureus 9 Staphylococcus epidermidis 10 Staphylococcus agalactise 11 Staphylococcus dysgalactiae 12 Staphylococcus equisimilis 13 Staphylococcus pneumoniae 14 Staphylococcus pyogenes
[0185] The skilled person will appreciate that the device may be modified for the capture and detection of various types of gram positive, gram negative and fungal pathogens. Examples of such gram positive pathogens include Staphylococcus aureus, CoNS (Coagulase negative Staphylococci), Streptococcus pneumoniae, Streptococcus spp, Enterococcus faecium and Enterococcus faecalis. Examples of such gram negative pathogens include Escherichia coli, Klebsiella (pneumoniae/oxytoca), Serratia marcescens, Enterobacter (cloacae/aerogenes), Proteus mirabilis, Pseudomonas aeruginosa, Acinetobacter baumannii and Stenotrophomonas maltophilia. Examples of fungal pathogens include Candida albicans, Candida tropicalis, Candida parapsilosis, Candida krusei, Candida glabrate and Aspergillus fumigatus.
[0186] In this example, a 5 ml whole blood sample is loaded into the blood separation chamber 403. The blood is loaded and a spin rate applied. The blood separation can take from 6-9 minutes to separate. Once ready, the spin rate of the disc is increased to wet and break the blood separation chamber's DF tab. The spin rate is reduced to allow the plasma to fill up each of the chambers and allow for a slow steady flow through the fourteen electrode incubation chambers. A long microchannel connects the final electrode chamber to the waste chamber. The flow rate of the plasma into the waste chamber 404 is controlled using a known width of channel. Increasing the size of this channel increases the exit flow rate of the sample. The incubation time varies from 7-9 minutes. A dissolvable film (DF) tab is located in the waste chamber. Once burst, the lower-channel air pressure is released and the wash chamber's DF tab is now in a burstable state. The spin rate is increased to burst the wash buffer reservoir 405 located directly above the electrode chambers. A series of lower channels links the wash buffer reservoir 405 to the electrode chambers 401. The spin rate is reduced and the wash buffer flows through each of the electrode chambers 401 into the waste chamber 405. The device is removed from the spin stand mechanism where it is then attached to a potentiostat for detection.
8. Electrochemical Detection of Bacteria
[0187] The device and method according to the present teaching allows captured pathogens to be detected using electrochemical impedance thus eliminating the 7-48 hour culture step of conventional known assays.
[0188] The present inventors have developed the technology to fabricate the microcavity array, selectively functionalise the top surface and cavity interiors and have demonstrated the capture of cells and developed an impedance based protocol for the detection of small numbers of cells (<10 cells) on electrodes. With reference to
[0189] With reference to
[0190] It has been determined that 2 micron cavities are the optimal size for pathogen capture as the pathogens may vary from 1-3 micron in size and can exist as single cells (1-3 micron in size) and colonies (2+ cells/aggregated cells 3-10 micron in size) in any given fluid. The single cells tend to “plug” inside the cavity while the larger colony/aggregates which are bigger than the 2 micron cavity diameter go across and “block” the cavity.
[0191] In one example, the device according to the present teaching detects pathogens by measuring the non-faradaic impedance in the presence of a dilute phosphate buffered saline solution. Using a highly efficient antibody capture layer and impedance based detection in a dilute electrolyte solution maximises the double layer thickness and increases the impedance change observed when cells are captured driving down the limit of detection. In electrochemical impedance, the Nyquist plot consists of an imaginary (Z″) and real (Z′) impedance and can be fitted to decouple changes in the solution phase resistance as well as resistance associated with the antibody layer or the capture of pathogens, see
[0192] It will be appreciated that what we have described here are two examples of a microfluidic disc where a plurality of chambers may be selectively blocked so as to change a response characteristic of a device indicative of the presence or otherwise of a target analyte. In a first aspect, the response characteristic is a binary response characteristic providing the user with an initial overview of the presence or otherwise of particular target analytes. In a second aspect, the response characteristics can be more directly tuned to the presence of particular types of analytes. In this way, the device can give a more granular or detailed information on a subtype of analyte. Therefore, particular disks can be provided for a genus type determination and further disks can be provided for analysis of a genus subtype having determined the genus.
[0193] The microfluidic device according to the present teaching allows for ultrasensitive, direct (no amplification of target, e.g., by blood culture) detection of an analyte. This approach is attractive for near point-of-use applications by rapidly providing easily interpreted information that directly influences decision making.
[0194] The binary response device according to the present teaching has been used to detect the presence of gram positive, gram negative, fungal species and mixtures thereof in blood culture samples. Pathogens which have been correctly identified by the device as being gram positive, gram negative or fungal species include, for example, Capnocytophaga gingivalis, Staphylococcus epidermis, E. coli, Staphylococcus hominis, Streptococcus mitis oralis, Enterococcus faecalium, Clostridia, gram negative with Enterococcus faecalis, Paenibacillus pabuli and Staphlococci haemolyticus. The device described herein enables the detection of such pathogens within a period of 15 minutes.
[0195] The device provides for multiplexed detection of a number of different analytes within a single microfluidic, sample-to-answer device.
[0196] The device enables the rapid assessment of health or environmental threats through a short analysis time since the signal, not the target is amplified.
[0197] Furthermore, the microfluidic device described provides for the accurate assessment of disease stage and prognosis since a wide dynamic range will be achieved by tuning the size of the detecting surface (fewer cavities) so that the same fraction of its surface is covered by analyte (key determinant of S/N ratio) even for ultralow concentrations (<pM) of the analyte in solution.
[0198] The device is advantageous in that it is a robust and low cost device. It utilises low power, simple electronics and a rugged electrochemical or optical transduction methodology. These features enable low cost production, maintenance and repair of the reader using technology similar to that used in blood glucose monitors.
[0199] A further advantage of the device is that it provides a “Sample-to-answer device” in which reagents are held within the device and their release triggered at the appropriate time. Thus, no additional reagents need to be added other than the sample itself minimizing operator error/contamination which as discussed above is a particular challenge in detecting low analyte concentrations.
[0200] The words comprises/comprising when used in this specification are to specify the presence of stated features, integers, steps or components but does not preclude the presence or addition of one or more other features, integers, steps, components or groups thereof.