METHOD AND DEVICE FOR DETECTING EXTRACELLULAR VESICLES
20230043792 · 2023-02-09
Inventors
Cpc classification
G01N21/648
PHYSICS
International classification
Abstract
Detection system for detecting at least one extracellular vesicle in a microfluid, including a broadband light source, collimating and focusing optics, a spectrophotometer, a microfluid apparatus and an active sensing element positioned inside the microfluid apparatus, the active sensing element including a substrate, a thin metal layer deposited on the substrate and a dielectric waveguide layer deposited on the metal layer, the light source generating at least one incident beam of light in the near infrared region, the metal layer and the waveguide layer each include a plurality of waveguides, the collimating optics collimates the incident beam of light on the substrate via the coupler, the focusing optics receives at least one reflection of the incident beam of light and provides the reflection to the spectrophotometer, the active sensing element causes surface plasmon waves in the microfluid when the microfluid is injected into the microfluid apparatus and the spectrophotometer detects resonance wavelength shifts in the reflection according to the surface plasmon waves thereby detecting the presence of the extracellular vesicle in the microfluid.
Claims
1. Detection system for detecting at least one extracellular vesicle in a microfluid, comprising: a broadband light source, generating at least one incident beam of light in the near infrared (NIR) region; collimating optics; focusing optics; a coupler, positioned between said collimating optics and said focusing optics; a spectrophotometer; a microfluid apparatus, comprising an inlet and an outlet; and an active sensing element, positioned inside said microfluid apparatus, said active sensing element comprising: a substrate; a metal layer with a thickness of 15-50 nanometers, deposited on said substrate; and a dielectric waveguide layer, deposited on said thin metal layer, wherein said thin metal layer and said dielectric waveguide layer each comprise a plurality of waveguides; wherein said collimating optics collimates said at least one incident beam of light on said substrate via said coupler; wherein said focusing optics receives at least one reflection of said at least one incident beam of light and provides said at least one reflection to said spectrophotometer; wherein said active sensing element causes surface plasmon waves in said microfluid when said microfluid is injected into said microfluid apparatus; and wherein said spectrophotometer detects resonance wavelength shifts in said at least one reflection according to said surface plasmon waves thereby detecting the presence of said at least one extracellular vesicle in said microfluid.
2. The detection system according to claim 1, wherein said coupler is selected from the list consisting of: a prism coupler having a high index of refraction; and a diffraction grating.
3. The detection system according to claim 1, wherein said spectrophotometer can detect said at least one reflection in a wavelength spectrum selected from the list consisting of: the visible wavelength spectrum; near infrared (NIR) spectrum; and the electromagnetic (EM) spectrum.
4. The detection system according to claim 1, wherein said thin metal layer enables energy of said at least one incident beam of light to be tunneled into said plurality of waveguides.
5. The detection system according to claim 1, wherein said dielectric waveguide layer has a thickness between 500-1500 nanometers.
6. The detection system according to claim 1, wherein said plurality of waveguides have a plasmon-waveguide structure.
7. The detection system according to claim 1, wherein said thin metal layer and said microfluid in said microfluid apparatus generate an asymmetric environment for said plurality of waveguides thereby increasing a sensitivity of said active sensing element.
8. The detection system according to claim 1, wherein an upper surface of said active sensing element is functionalized with at least one antibody.
9. Detection system for detecting at least one extracellular vesicle in a microfluid, comprising: a coherent light source, generating at least one incident beam of light in the near infrared (NIR) region; collimating optics; focusing optics; a coupler, positioned between said collimating optics and said focusing optics; an optical detector; a microfluid apparatus, comprising an inlet and an outlet; and an active sensing element, positioned inside said microfluid apparatus, said active sensing element comprising: a substrate; a thin metal layer, deposited on said substrate; and a dielectric waveguide layer, deposited on said thin metal layer, wherein said thin metal layer and said dielectric waveguide layer each comprise a plurality of waveguides; wherein said collimating optics collimates said at least one incident beam of light on said substrate via said coupler; wherein said focusing optics receives at least one reflection of said at least one incident beam of light and provides said at least one reflection to said optical detector; wherein said active sensing element causes surface plasmon waves in said microfluid when said microfluid is injected into said microfluid apparatus; and wherein said optical detector detects shifts in optical intensity in said at least one reflection according to said surface plasmon waves thereby detecting the presence of said at least one extracellular vesicle in said microfluid.
10. The detection system according to claim 9, wherein said coherent light source is a laser diode.
11. The detection system according to claim 10, wherein said laser diode has an operational wavelength of 785 nanometers.
12. The detection system according to claim 10, wherein said laser diode has an operational wavelength in accordance with a required sensitivity and detection dynamic range.
13. The detection system according to claim 9, wherein said optical detector has a fixed angle in relation to said coupler.
14. The detection system according to claim 9, wherein said optical detector detects shifts in optical reflectance of said at least one reflection at a fixed wavelength of said at least one incident beam of light.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0011] The disclosed technique will be understood and appreciated more fully from the following detailed description taken in conjunction with the drawings in which:
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[0015]
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DETAILED DESCRIPTION OF THE EMBODIMENTS
[0019] The disclosed technique overcomes the disadvantages of the prior art by providing a novel system and method for detecting and recognizing EVs such as exosomes. The EV detector of the disclosed technique has an increased sensitivity and accuracy by at least one order of magnitude over the prior art, is cost effective to fabricate and also simple to use thus making it practical for clinical settings and experimental schemes. The disclosed technique thus presents a wide scale EV detector that can be used in settings requiring high throughput, wherein sample sizes might be small and wherein EV detection and recognition is simplified. According to the disclosed technique, cancer cells can be detected with high sensitivity and specificity that enables early-stage tumor recognition, the high sensing capability being possible with small EV sample amounts and diagnosis times being very short (on the range of minutes). The disclosed technique can be used to also detect autoimmune diseases and any other body state that has a specific exosome signature. As described below, the EV detector of the disclosed technique is simple to fabricate and easy to use thereby enabling practical clinical applications. One use of the disclosed technique is the detection of cancer biomarkers. According to the disclosed technique, a hybrid structure is implemented in which a plasmon-waveguide is excited which is coupled with optical modes having extremely high sensitivity in the near infrared (herein abbreviated NIR) region and the mid infrared (herein abbreviated MIR) region. Highly sensitive structures representing different types of EVs can be detected based on optical detection. The structures are based on probing the optical properties of an analyte (i.e., the medium to be sensed) when it is attached to the hybrid structures.
[0020] According to the disclosed technique, the ultra-high sensitivity of the detector enables the use of raw body fluids without purifications or further concentration of the EVs contained in the samples, which might be blood, urine, saliva, cerebrospinal fluid and/or amniotic fluid. Since optical measurements are used to detect the EV, detection times for the EV detector of the disclosed technique are extremely short (i.e., at most a matter of minutes). Furthermore, the disclosed technique uses broadband light sources which do not require powerful light sources that may deteriorate a measured EV sample or limit its use. Also according to the disclosed technique, target-specific EV binding can be used and thus different types of tumor cells can be probed simultaneously, thereby increasing the specificity of the EV detector and the possible throughput. Furthermore, the material costs and fabrication costs of the disclosed technique are low compared to the systems of the prior art, comprising homogeneous planar films made from metals and dielectrics, making it easy for fabrication, characterization and calibration, thus leading to an EV detector system and method which is cost effective.
[0021] According to the disclosed technique, a thin metallic surface is used as the base upon which an analyte containing an EV sample is placed and then excited via surface plasmon waves (herein abbreviated SPVV) through a plasmon-waveguide structure. The structure of the disclosed technique thus enables biosensing. SPWs are collective oscillations of electrons on the surface of thin metallic films that can be efficiently excited by light in the visible to the MIR region. Unlike propagating electromagnetic (herein abbreviated EM) waves, SPWs are excited evanescently and exhibit high intensities on a metal-analyte interface. The high EM intensities inside the medium adjacent to the metal are extremely sensitive to their optical properties, making them a powerful tool for molecular sensing and detection. When SPWs are excited by light using either a high-refractive-index prism or a diffraction grating, surface plasmon resonance (herein abbreviated SPR) is obtained exhibiting distinct spectroscopic signatures that can be used for sensing and detection.
[0022] According to the disclosed technique, a multilayer system is engineered causing the dispersion of a plurality of optical modes and thereby significantly enhancing their sensitivity for molecular detection. The hybrid structure of the disclosed technique couples plasmonic layers with dielectric waveguides and provides optical modes in the NIR region. Transverse electric (herein abbreviated TE) and transverse magnetic (herein abbreviated TM) polarization states can be excited in the hybrid structure thereby enabling anisotropic sensing to be performed. The configuration of the disclosed technique enables:
[0023] (1) ultra-high sensitivity and figure-of-merit (FOM);
[0024] (2) large penetration depth in the NIR region; and
[0025] (3) capability for anisotropic sensing.
[0026] All these features are particularly essential when detecting tumor-derived EVs. The low concentrations of EVs typically retrieved from bodily fluids require extremely high sensitivity on the part of the detection element. A large penetration depth, on the other hand, is critical to differentiating between exosomes (tens of nanometers in size) and microvesicles (microns in size). The possibility of sensing the anisotropy of the target sample enables gaining deep insights into the structure and morphology of the analyte. As mentioned above, the disclosed technique is not limited to the detection of exosomes as biomarkers for the detection of cancer but can also be used to detect disease states in the body having a specific exosome signature.
[0027] Reference is now made to
[0028] An example of the preparation of active layer structure 100 according to the disclosed technique may be as follows. In a first step (1), a glass substrate is taken and is thoroughly cleaned using a precise cleaning procedure. In a second step (2), the thin metallic layer is deposited on the glass substrate either via sputtering or by a technique of thermal evaporation under high vacuum. In a third step (3), an appropriate polymer is dissolved in an appropriate solvent to prepare dielectric waveguide layer 102. For example, PMMA (a polymer) may be dissolved in toluene as a solvent. The thickness of the attainable waveguide layer can be adjusted by modifying the viscosity of the polymer solution. In a fourth step (4), the polymer solution is applied to the top of the thin metallic layer with its thickness being fine-tuned by a technique of spin coating. In a fifth step (5), the whole active layer structure is annealed in an oven with a temperature ranging from 100-120 degrees Celsius for about one hour, thereby making the dielectric waveguide layer chemically stable. It is noted that prior art techniques may fabricate the dielectric waveguide layer from SiO.sub.2 which requires thermal evaporation of SiO.sub.2 under ultra-high vacuum conditions. Such techniques are complicated and expensive as compared to the disclosed technique using a polymer.
[0029] Reference is now made to
[0030] Microfluid 122 is injected into EV detection system 120 via the inlet and attaches to the upper surface of active sensing layer 124. EV detection system includes a microfluidic apparatus which can be fabricated by standard photolithography techniques. A microfluidic mold can be made of polydimethylsiloxane (herein abbreviated PDMS) with a depth of sub-millimeters having an integrated inlet and outlet. Incident beam of light 130 is collimated, via collimating optics 128, to the substrate layer (not labeled) of active sensing layer 124 which then travels through the dielectric waveguide layer (not labeled) of active sensing layer 124, thereby causing SPR of the EVs in microfluid 122. Guided optical modes in the dielectric waveguide layer (not labeled) of active sensing layer 124 are excited and are used for sensing EVs on the upper interface. The guided optical modes are then detected in a reflected beam of light 134 which is received via focusing optics 132 into a fiber probe (not shown). The spectrum of reflected beam of light 134 is recorded on a spectrophotometer (not shown) with maximum sensitivity in the working spectral region. The optical intensity reflected from the EVs and targets which adsorb on the active sensing layer structure is a function of wavelength. Upon adsorption of the target to an antibody on the upper layer of the active sensing layer, the optical intensity reflected from the specific region will change gradually which can be detected by a spectrophotometer. The reflected beam of light can be analyzed, as described below, for the presence of specific EVs which may be disease markers. As described below in
[0031] It is noted that SPW can also be used to excite in the active sensing layer structure, however such waves will have an extremely low sensitivity to any variations in the medium to be sensed. This is because SPW will decay rapidly inside the waveguides and will not reach the analyte region. Even though according to the disclosed technique SPW is not used for sensing and therefore a thin metallic layer may seem unnecessary, the thin metallic layer of the active sensing layer is required in order to tunnel the energy of the incident light to the waveguides through the evanescent field that is generated inside the thin metallic layer.
[0032] According to the disclosed technique, microfluid 122 can be prepared as follows. First a microfluidic cover mold is made from a polymer, such as PDMS, which is a commercially available material that is cost effective and is commonly used for preparing microfluids having varying sizes from microns to millimeters. Other commercially available materials can also be used. Second, after preparing the microfluidic cover mold, both the microfluidic cover mold and the active sensing layer (i.e., the sensing element) are cleaned by a plasma treatment. A compact microwave generator with high intensity can be used to clean the mold and the sensing element after which adhesion of microfluid 122 is straightforward.
[0033] Reference is now made to
[0034] Referring back to
[0035] Incident beam of light 130 emerges from a broadband source (not shown) that covers the working spectral region. The broadband source can be a white light source with low intensity thereby not deteriorating the tested sample of microfluid and not limiting the user. As mentioned above, the detection mechanism is based on a weak probing of the reflected beam spectrum. As shown in graph 158 (
[0036] It is noted that unlike the prior art, the configuration of the disclosed technique does not make use of functionalized magnetic beads, electrochemical schemes, optical coherence tomography two photon luminescence or conventional fluorescence techniques for the detection of exosomes. In addition, the detection scheme of the disclosed technique as described above relates to surface plasmon waves and surface plasmon resonance and does not relate to surface enhanced Raman scattering (herein abbreviated SERS). Furthermore, the disclosed technique does not make use of nanoparticle arrays nor functionalized nanoparticles with supramolecular sequences for the detection of biomarkers. It is noted that nanoparticle arrays are substrates that require sophisticated fabrication techniques such as focused ion beam (herein abbreviated FIB) systems or electron beam lithography means. Both these fabrication techniques require expensive and large scale facilities and involve a milling process that requires time, expertise and accuracy. As mentioned above, the active sensing element of the disclosed technique is composed of a number of two-dimensional (herein abbreviated 2D) layers not requiring any patterning. The metal layer in the active sensing element is very thin and can be prepared by sputtering with high quality which is a process that takes a number of minutes to fabricate.
[0037] As mentioned above, the disclosed technique enables a high level of sensitivity and detection resolution above the prior art. Whereas prior art systems detect shifts in wavelength, the disclosed technique detects shifts in optical intensity. The resolution in prior art systems for the detection of shifts in wavelength is in the range of nanometers when the sensing element is functionalized with specific antibodies. According to the disclosed technique, shifts in optical intensity can be detected in the range of nanometers when the sensing element is not functionalized with specific antibodies. In the case of the sensing element (the active layer structure) being functionalized with specific antibodies, shifts in optical intensity should be able to be detected in the sub-nanometer range, thereby increasing the detection resolution of the disclosed technique by an order of magnitude over the prior art.
[0038] Also as mentioned above, the disclosed technique provides for a cost effective EV detector which is inexpensive to fabricate and operate. Prior art systems for detecting EVs which use nanoparticle arrays (e.g., hole-arrays) need to measure the optical density of an optical beam that emerges from the array in a transmission mode. Such detection requires the use of a cooled CCD spectrometer. Such systems are expensive and also need to be cooled to suppress or lower any possible thermal noise during use, which can be significant when the optical signal is very weak. In the disclosed technique, reflectivity of an incident beam of light is measured from a 2D active sensing element thereby leading to a signal that is averaged over an entire area of a sensed region. In order to measure such a reflectivity all that is needed is a regular spectrometer in the visible or NIR regions, or in the EM spectrum, which significantly simplifies the measuring system as compared to a cooled CCD spectrometer.
[0039] It is noted that SPR sensors as biological sensors are known in the art. According to the disclosed technique, an SPR sensor is provided having increased sensitivity by at least one to two orders of magnitude thereby enabling the detection of EVs such as microvesicles and exosomes. The increased sensitivity is achieved according to a coupling between a thin metal layer combined with a dielectric layer, for example made from a polymer. This was shown above in
[0040] The disclosed technique has been described as a system and method for measuring changes in wavelength based on differences in reflectance which comes about through surface plasmon resonance coupled to highly-sensitive optical guided modes. However the disclosed technique can also be embodied via a system and method for measuring changes in intensity as an indication of the presence of an exosome. Said otherwise, the sensitivity of the system of the disclosed technique can be embodied as a measure of minute changes in intensity of the analyte (i.e., the microfluid sample containing the EVs). Such a system is similar to the EV detection system shown above in
[0041] Reference is now made to
[0042] Reference is now made to
[0043] Reference is now made to
[0044] According to the disclosed technique coupled plasmon-waveguide optical modes can be used to detect exosomes with a sensitivity of at least 10.sup.−4 percent weight in a bulk medium, which is at least one order of magnitude higher in sensitivity than the sensitivity reported by the prior art. Furthermore, the EV detection system of the disclosed technique can not only detect the presence of exosomes with high sensitivity but can also distinguish between different exosomes from different sources. As mentioned above, the disclosed technique can be used to detect exosomes and other EVs as biomarkers to detect the presence of cancers and other diseases of the body that exhibit a specific and unique exosome and/or EV signature.
[0045] Reference is now made to
[0046] In this embodiment of the disclosed technique, the incident wavelength is fixed and the reflectivity of the incident light versus the incident angle is scanned and measured. At the resonance angle, there should be a dip in the reflectivity, which is also sensitive to the presence of the target exosomes on the interface surface. In this embodiment, the detector is fixed at a given angle and detection is achieved according to intensity changes as a function of adsorption of the analyte. In this embodiment, there is no need for a spectrometer and a single detector can be used that only needs to measure the intensity of the reflected light at a given wavelength. The observation plane represents the angle at which the detector is set and can be optimized for maximum sensitivity.
[0047] It will be appreciated by persons skilled in the art that the disclosed technique is not limited to what has been particularly shown and described hereinabove. Rather the scope of the disclosed technique is defined only by the claims, which follow.