Highly active S-cyanohydrin lyase and application thereof
11492607 · 2022-11-08
Assignee
Inventors
Cpc classification
International classification
C12P13/00
CHEMISTRY; METALLURGY
Abstract
The invention provides a highly active S-cyanohydrin lyase obtained by mutating an amino acid residue at position 103 of a wild-type cassava S-cyanohydrin lyase. The mutation can significantly increase an expression of a mutant enzyme in E. coli and does not require a decrease in temperature when induced. Further mutations at position 128 and other sites were performed to obtain mutants with increased catalytic activity.
Claims
1. A mutated S-cyanohydrin lyase, which is mutated at two or more sites comprising amino acid residue of position 103 and amino acid residue of position 128 of SEQ ID NO. 1, wherein the amino acid residue of position 103 is mutated from H to L, I, V, C, S or M, the amino acid residue of position 128 is mutated from W to A, N, L, V, G or Y, and the amino acid sequence of the mutated S-cyanohydrin lyase has at least 80% homology to SEQ ID NO. 1.
2. The mutated S-cyanohydrin lyase of claim 1, wherein the amino acid residue of position 103 is mutated from H to L.
3. The mutated S-cyanohydrin lyase of claim 1, wherein the amino acid residue of position 128 is mutated from W to A.
4. A host cell expressing the mutated S-cyanohydrin lyase of claim 1.
5. An enzyme preparation comprising the mutated S-cyanohydrin lyase of claim 1.
6. A method for preparing S-cyanohydrin comprising the steps of: (i) contacting the mutated cyanohydrin lyase of claim 1 or an enzyme preparation comprising the mutated S-cyanohydrin lyase with a reaction substrate to carry out a catalytic reaction, thereby producing the S-cyanohydrin; (ii) isolating and purifying the S-cyanohydrin product.
7. The mutated S-cyanohydrin lyase of claim 1, wherein the mutated S-cyanohydrin lyase is mutated at one or more sites selected from the group consist of: amino acid residue of position 2, amino acid residue of position 81, amino acid residue of position 149, amino acid residue of position 176, amino acid residue of position 209, amino acid residue of position 94, amino acid residue of position 165, amino acid residue of position 140, amino acid residue of position 224, amino acid residue of position 173, and amino acid residue of position 36 of SEQ ID NO. 1.
8. The mutated S-cyanohydrin lyase of claim 7, wherein the amino acid residue of position 2 is mutated from V to P, L, D, I, G, H, R, M, S, C, W, T, Q, or A; and/or the amino acid residue of position 81 is mutated from C to A, V or I; and/or the amino acid residue of position 149 is mutated from L to I, C, A or P; and/or the amino acid residue of position 94 is mutated from V to P, R, S, K; and/or the amino acid residue of position 176 is mutated from K to P.
Description
DESCRIPTION OF DRAWINGS
(1)
(2)
EMBODIMENTS FOR CARRYING OUT THE PRESENT INVENTION
(3) After extensive and intensive studies, the inventors have unexpectedly discovered that mutation at amino acid residue of position 103 of the wild-type S-cyanohydrin lyase can significantly increase the expression of the mutant enzyme in E. coli. In addition, it is not needed to reduce the temperature during the induction of expression, which significantly reduces the preparation cost of the enzyme. Further, mutations at other sites such as position 128 can obtain an S-cyanohydrin lyase with improved catalytic activity. The experimental results showed that the catalytic activity of the mutated S-cyanohydrin in the addition reaction of m-phenoxybenzaldehyde (m-PBAld) with HCN was increased by more than 30% compared with that of the wild type. On this basis, the inventors completed the present invention.
(4) Before describing the present invention, it should be understood that the invention is not limited to the specific methods and experimental conditions described, as such methods and conditions may be changed. It is also understood that the terms used herein are only for the purpose of describing specific embodiments and are not intended to be restrictive. The scope of the invention will be limited only by the appended claims.
(5) Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by the skilled in the art of the invention. As used herein, when used in reference to a particular recited value, the term “about” means that the value can vary by no more than 1% from the recited value. For example, as used herein, the expression “about 100” comprises all values between 99 and 101 (e.g., 99.1, 99.2, 99.3, 99.4, etc.).
(6) Although any methods and materials similar or equivalent to those described in the present invention can be used in the practice or testing of the invention, the preferred methods and materials are exemplified herein.
(7) Cyanohydrin Lyase
(8) Cyanohydrin lyase (Hydroxynitrile lyase) is mainly derived from a few plant tissues such as rubber, cassava and sorghum, which mainly comprises: cassava cyanohydrin lyase (MeHNL), lacquer tree cyanohydrin lyase (HbHNL), and almond cyanohydrin lyase (PaHNL).
(9) In a preferred embodiment of the invention, the cyanohydrin lyase is cassava cyanohydrin lyase.
(10) In a preferred embodiment of the invention, preferably, the sequence of wild type cassava cyanohydrin lyase is as follow:
(11) TABLE-US-00002 SEQ ID NO.: 1 MVTAHFVLIH TICHGAWIWH KLKPALERAG HKVTALDMAA SGIDPRQIEQ INSFDEYSEP 60 LLTFLEKLPQ GEKVIIVGES CAGLNIAIAA DRYVDKIAAG VFHNSLLPDT VHSPSYTVEK 120 LLESFPDWRD TEYFTFTNIT GETITTMKLG FVLLRENLFT KCTDGEYELA KMVMRKGSLF 180 QNVLAQRPKF TEKGYGSIKK VYIWTDQDKI FLPDFQRWQI ANYKPDKVYQ VQGGDHKLQL 240 TKTEEVAHIL QEVADAYA 258
(12) The wild-type coding gene sequence is as follow:
(13) TABLE-US-00003 (SEQ ID NO. 2) ATGGTTACTGCACACTTCGTTCTGATTCACACCATTTGTCACGGCGCAT GGATTTGGCACAAACTGAAACCGGCCCTGGAACGTGCTGGCCACAAAGT TACTGCACTGGACATGGCAGCCAGTGGCATTGACCCGCGTCAAATTGAA CAGATCAACTCTTTCGATGAATACTCTGAACCGCTGCTGACTTTCCTGG AAAAACTGCCGCAAGGCGAAAAGGTTATCATTGTTGGTGAAAGCTGTGC AGGCCTGAACATTGCTATTGCTGCTGATCGTTACGTTGACAAAATTGCA GCTGGCGTTTTCCACAACTCCCTGCTGCCGGACACCGTTCACAGCCCGT CTTACACTGTTGAAAAGCTGCTGGAATCGTTCCCGGACTGGCGTGACAC AGAATATTTCACGTTCACCAACATCACTGGCGAAACCATCACTACCATG AAACTGGGTTTCGTTCTGCTGCGTGAAAACCTGTTCACCAAATGCACTG ATGGCGAATATGAACTGGCAAAAATGGTTATGCGCAAGGGCTCTCTGTT CCAAAACGTTCTGGCTCAGCGTCCGAAGTTCACTGAAAAAGGCTACGGC TCTATCAAGAAAGTTTATATTTGGACCGATCAAGACAAAATATTCCTGC CGGACTTCCAACGCTGGCAAATTGCAAACTACAAACCGGACAAGGTTTA TCAGGTTCAAGGCGGCGATCACAAGCTGCAGCTGACAAAAACTGAAGAA GTAGCTCACATTCTGCAAGAAGTTGCTGATGCATACGCTTAA
(14) Mutated Cyanohydrin Lyase with High Activity
(15) The inventors of the present invention have developed a specific high-throughput screening method based on the reported cassava-derived S-cyanohydrin lyase MeHNL, and directed evolution has been carried out accordingly. Cyanohydrin lyase sequence with higher enzyme activity was obtained by further screening. The mutant enzyme was prepared by high-density fermentation of E. coli, and its catalytic performance and stereoselectivity were determined. It was found that the mutant enzymes have extremely high application value. The highest specific enzyme activity of the mutant enzyme on m-PBAld is more than 10 times of that of the wild type, and the ee value is as high as about 99%, which is higher than that of all the reported S-cyanohydrin lyases. The enzymic catalytic reaction is shown in the following formula:
(16) ##STR00001##
(17) Preferably, the conditions of catalytic reactions are as follow:
(18) Enzyme activity assay: 1 U of enzyme activity is defined as the amount of enzyme required to catalyze the production of 1 μmol ether aldehyde per minute.
(19) The enzyme activity assay was carried out by referring to the method reported by Selmar (Analytical Biochemistry 166 (1987), 208-211), with 10 mM m-phenoxybenzonitrile, 20 uL methanol, 20 mM citrate buffer (pH 5.0), and 10 uL enzyme solution. The above reaction solution was incubated at 25° C., and the change in absorbance at OD 310 nm was measured within 1-5 min. The curve of time (min) and absorbance change was drawn. The slope of the curve of the experimental group was set to ΔK, and the slope of the control group was zero. Under the same condition and without adding any enzyme solution, the change in absorbance at 310 nm wavelength, in 25° C., was recorded as a control group. The control group should not have a change in absorbance.
(20) The slope of concentration standard curve of m-oxybenzaldehyde was K. The enzyme activity was calculated according to the formula:
(21)
(22) Vector and Host Cell
(23) The present invention also provides a vector comprising the optimized cyanohydrin lyase gene of the present invention, and a host cell containing the vector.
(24) In a preferred embodiment of the invention, the vector has the ability to be expressed in E. coli, more preferably in E. coli BL21 (DE3) strain.
(25) The optimized cyanohydrin lyase gene sequences of the invention can be obtained by conventional methods that can be used by one of ordinary skill in the art, such as fully artificial synthesis or PCR synthesis. A preferred method of synthesis is the asymmetric PCR method. The asymmetric PCR method uses a pair of primers with unequal amounts, and a large amount of single-stranded DNA (ssDNA) is produced by PCR amplification. The pair of primers are called unrestricted primer and restricted primer, respectively, and the ratio is generally 50-100:1. In the first 10-15 cycles of the PCR reaction, the amplified product is mainly double-stranded DNA. But when the restricted primer (low concentration primer) is consumed, the PCR guided by the unrestricted primer (high concentration primer) will produce a large amount of single-stranded DNA. The primers for PCR can be appropriately selected according to the sequence information of the present invention disclosed herein, and can be synthesized by a conventional method. The amplified DNA/RNA fragment can be isolated and purified by conventional methods such as gel electrophoresis.
(26) The polynucleotide sequence of the present invention can express or produce a target protein by conventional recombinant DNA technology, comprising the steps of:
(27) (1) transforming or transducing a suitable host cell, preferably an E. coli cell, with a polynucleotide (or variant) encoding the protein of the present invention, or with a recombinant expression vector containing the polynucleotide;
(28) (2) culturing the host cell in a suitable medium;
(29) (3) isolating and purifying the protein from the culture medium or cell.
(30) Methods well known to the skilled in the art can be used to construct the expression vector, which contains the DNA sequence coding the protein of the invention and suitable transcription/translation control signals. Preferred commercially available vector is: pET28. These methods comprise DNA recombinant technology in vitro, DNA synthesis technology, recombinant technology in vivo, and the like. The DNA sequence can be operably linked to an appropriate promoter in an expression vector to direct mRNA synthesis. The expression vector also comprises a ribosome binding site for translation initiation and a transcription terminator. Furthermore, the expression vector preferably comprises one or more selectable marker genes to provide phenotypic traits for selection of transformed host cells.
(31) The present invention also provides a recombinant vector comprising the optimized MeHNL DNA sequence of the present invention. In a preferred embodiment, the recombinant vector comprises a multiple cloning site or at least one restriction site downstream of the promoter. When a target gene needs to be expressed, the target gene can be ligated into a suitable multiple cloning site or a restriction site, thereby operably linking the target gene to the promoter.
(32) In another preferred embodiment, the recombinant vector comprises: a promoter, a target gene, and a terminator in the 5′ to 3′ direction. If needed, the recombinant vector can also include the following elements: a protein purification tag; a 3′ polynucleotide signal; a non-translated nucleic acid sequence; a transport and targeting nucleic acid sequence; a selectable marker (antibiotic resistance gene, fluorescent protein, etc.); an enhancer; or an operator.
(33) Methods for preparing recombinant vectors are well known to the skilled in the art. The expression vector can be a bacterial plasmid, a phage, a yeast plasmid, a virus of plant cell, a virus of mammalian cell or other vectors. In all, any plasmid and vector can be employed as long as it is capable of replicating and is stable in the host.
(34) The skilled in the art can construct the vector containing the promoter and/or target gene sequence of the present invention using well-known methods. These methods comprise DNA recombinant technology in vitro, DNA synthesis technology, recombinant technology in vivo, and the like.
(35) The expression vector of the present invention can be used to transform an appropriate host cell such that the host transcribes the target RNA or expresses the target protein. The host cell can be a prokaryotic cell such as Escherichia coli, Corynebacterium glutamicum, Brevibacterium flavum, Streptomyces, Agrobacterium; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell, such as a plant cell. It will be apparent to the skilled in the art how to select an appropriate vector and host cell. Transformation of host cells with recombinant DNA can be carried out using conventional techniques well known to the skilled in the art. When the host is a prokaryote (such as E. coli), it can be treated with the CaCl.sub.2 method or electroporation method. When the host is a eukaryote, the following DNA transfection methods can be used: calcium phosphate coprecipitation method, conventional mechanical method (such as micro-injection, electroporation, liposome packaging, etc.). Transformation of plant can be carried out using Agrobacterium transformation or gene gun transformation or other methods, such as leaf disc method, immature embryo transformation method, flower bud soaking method and the like. The transformed plant cells, tissues or organs can be regenerated into plants using conventional method to obtain transgenic plants.
(36) The term “operably linked” means that a target gene intended for transcriptional expression is linked to its control sequence for expression in a manner conventional in the art.
(37) Culture of Engineering Bacteria and Fermentation Production of Target Protein
(38) After obtained, the engineered cell can be cultured under suitable conditions to express the protein encoded by the gene sequence of the present invention. Depending on the difference of host cells, the medium used in the culture may be selected from various conventional mediums, and the host cells were cultured under conditions suitable for growth. After the host cells having grown to an appropriate cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction) and the cells are cultured for a further period of time.
(39) In the present invention, conventional fermentation conditions can be employed. Representative conditions include (but are not limited to):
(40) (a) in terms of temperature, the fermentation and induction temperature of cyanohydrin lyase is maintained at 25-37° C.;
(41) (B) in terms of pH during the induction period, the pH of the induction period is controlled at 3-9;
(42) (C) in terms of dissolved oxygen (DO), the DO is controlled at 10-90%, and can be maintained by the passage of the oxygen/air mixture;
(43) (d) in terms of additional medium, the type of additional medium should include carbon source such as glycerin, methanol, glucose, etc., which can be fed separately or by mix;
(44) (e) in terms of IPTG concentration during the induction period, conventional induced concentration can be used in the present invention, and usually the IPTG concentration is controlled at 0.1-1.5 mM;
(45) (f) in terms of induction time, there is no particular limitation, and it is usually 2 to 20 hours, preferably 5 to 15 hours.
(46) The target protein cyanohydrin lyase of the present invention exists in the cells of Escherichia coli. The host cells are collected by a centrifuge. Then the host cells are disrupted by high pressure, machine power, enzymatic digestion of cell or other cell disruption methods to release the recombinant protein, and a preferred method is high pressure method. The host cell lysate can be preliminary purified by methods such as flocculation, salting out, ultrafiltration, etc., followed by purification such as chromatography, ultrafiltration, etc. The protein can also be purified directly by chromatography.
(47) Chromatography technology comprises cation exchange chromatography, anion exchange chromatography, gel filtration chromatography, hydrophobic chromatography, affinity chromatography and the like. Commonly used chromatographic method comprises:
(48) 1. Anion Exchange Chromatography:
(49) Anion exchange chromatography media comprise, but are not limited to, Q-Sepharose, DEAE-Sepharose. If the salt concentration of the fermented sample is too high to affect the binding to the ion exchange media, the salt concentration needs to be reduced before ion exchange chromatography. The balance buffer of sample can be replaced by dilution, ultrafiltration, dialysis and gel filtration chromatography, etc., until it is similar to the corresponding equilibrium liquid system of ion exchange column. Then the sample is loaded for gradient elution of salt concentration or pH.
(50) 2. Hydrophobic Chromatography:
(51) Hydrophobic chromatography media comprise, but are not limited to: Phenyl-Sepharose, Butyl-Sepharose, Octyle-Sepharose. The salt concentration of sample is increased by adding NaCl, (NH.sub.4).sub.2SO.sub.4 and the like. Then the sample is loaded and eluted by reducing the salt concentration. Impurity protein with a great difference in hydrophobicity is removed by hydrophobic chromatography.
(52) 3. Gel Filtration Chromatography
(53) Hydrophobic chromatography media comprise, but are not limited to, Sephacryl, Superdex, Sephadex. By gel filtration chromatography, the buffer system is replaced or the sample is further purified.
(54) 4. Affinity Chromatography
(55) Affinity chromatography media comprise, but are not limited to, HiTrap™ Heparin HP Columns.
(56) 5. Membrane Filtration
(57) The ultrafiltration media comprise organic membranes (such as polysulfone membranes), inorganic membranes (such as ceramic membranes, and metal membranes). Purification and concentration can be achieved by membrane filtration.
(58) Preparation of Composition of Enzyme Preparation
(59) The present invention also provides a composition of enzyme preparation comprising the cyanohydrin lyase of the present invention.
(60) The composition of enzyme preparation of the present invention may further comprise: citric acid, tartaric acid, and/or boric acid.
(61) Method for Preparing S-Cyanohydrin
(62) The present invention also provides a method for preparing S-cyanohydrin, comprising the steps of:
(63) (1) contacting the mutated cyanohydrin lyase of the present invention with a reaction substrate to carry out a catalytic reaction, thereby producing the S-cyanohydrin;
(64) (2) isolating and purifying the S-cyanohydrin product.
(65) In a preferred embodiment of the invention, in step (1), the reaction substrate is m-phenoxybenzaldehyde, and acetone cyanohydrin (or hydrogen cyanide (or sodium cyanide/cyanide)).
(66) In a preferred embodiment of the invention, in step (1), the temperature of the catalytic reaction is 0-20° C.
(67) The main advantages of the invention are:
(68) (1) the catalytic activity of the mutated S cyanohydrin lyase according to the present invention is significantly improved compared to that of the wild type, and the catalytic activity of some mutants is even more than 10 times of that of the wild type;
(69) (2) the mutated S cyanohydrin lyase according to the present invention can be expressed in large quantities in engineered Escherichia coli, and thus reducing the preparation cost.
(70) (3) the mutated S cyanohydrin lyase according to the present invention can be expressed at high temperature (about 25-37° C.), which greatly reduces the production cost and simplifies the fermentation process, while the lyase expressed at high temperature by the wild-type and some mutants has no activity or very low activity
(71) The invention is further illustrated by the following specific examples. It is to be understood that these examples are for illustrative purposes only and are not intended to limit the scope of the invention. The experimental methods in the following examples which do not specify the specific conditions are usually performed under conventional conditions, for example, conditions described in Sambrook. J et al., Molecular Cloning-A Laboratory Manual (translated by Huang Peitang et al., Beijing: Science Press, 2002.), or in accordance with the conditions recommended by the manufacturer. Percentages and parts are by weight unless otherwise stated. The experimental materials and reagents used in the following examples are commercially available unless otherwise specified.
Example 1: Construction of a Mutant Library
(72) Taking the H103 mutation as an example, the construction steps of the mutant library were as follows:
(73) Site-saturated mutant was performed on H103 and primers were designed.
(74) TABLE-US-00004 H103-f: (SEQ ID NO. 3) 5′-GCAGCTGGCGTTTTCNNNAACTCCCTGCTGCCG-3′ H103-r: (SEQ ID NO. 4) 5′-CGGCAGCAGGGAGTTNNNGAAAACGCCAGCTGC-3′
(75) The target band was amplified by PCR using plasmid pET21a-meHNL as the template. The procedure is as follows:
(76) TABLE-US-00005 95° C. 5 min 95° C. 30 s {close oversize brace} 50° C. 30 s 30 cycles 72° C. 5 min 72° C. 10 min 12° C. ∞
(77) PCR product was digested with Dpn I at 37° C. for 2 hours. After the reaction, the digestive solution was transformed into competent cell E. coli BL21 (DE3). Then the strains were coated on LB medium that containing 100 ug/mL ampicillin, and cultured overnight at 37° C. to obtain a mutant library.
(78) The construction of mutant library of other sites was performed in the same manner as above. Primer sequences designed for the construction of mutant library of other sites are shown in the following table:
(79) TABLE-US-00006 TABLE 1 Mutation site and primer SEQ Number name Primer sequence ID NO. 1 H103-f GCAGCTGGCGTTTTCNNNAACTCCCTGCTGCCG 3 2 H103-r CGGCAGCAGGGAGTTNNNGAAAACGCCAGCTGC 4 3 W128-f GAATCGTTCCCGGACNNNCGTGACACAGAATAT 5 4 W128-r ATATTCTGTGTCACGNNNGTCCGGGAACGATTC 6 5 V2-f GGAGATATACATATGNNNACTGCACACTTCGTT 7 6 V2-r AACGAAGTGTGCAGTNNNCATATGTATATCTCC 8 7 L36-f CACAAAGTTACTGCANNNGACATGGCAGCCAGT 9 8 L36-r ACTGGCTGCCATGTCNNNTGCAGTAACTTTGTG 10 9 C81-f CATTGTTGGTGAAAGCNNNGCAGGCCTGAACATTG 11 10 C81-r CAATGTTCAGGCCTGCNNNGCTTTCACCAACAATG 12 11 V94-f GCTGCTGATCGTTACNNNGACAAAATTGCAGCT 13 12 V94-r AGCTGCAATTTTGTCNNNGTAACGATCAGCAGC 14 13 L121-f CTTACACTGTTGAAAAGNNNCTGGAATCGTTCCCG 15 14 L121-r CGGGAACGATTCCAGNNNCTTTTCAACAGTGTAAG 16 15 L122-f ACTGTTGAAAAGCTGNNNGAATCGTTCCCGGAC 17 16 L122-r GTCCGGGAACGATTCNNNCAGCTTTTCAACAGT 18 17 F125-f AAGCTGCTGGAATCGNNNCCGGACTGGCGTGAC 19 18 F125-r GTCACGCCAGTCCGGNNNCGATTCCAGCAGCTT 20 19 D127-f CTGGAATCGTTCCCGNNNGCACGTGACACAGAA 21 20 D127-r TTCTGTGTCACGTGCNNNCGGGAACGATTCCAG 22 21 R129-f TCGTTCCCGGACGCANNNGACACAGAATATTTC 23 22 R129-r GAAATATTCTGTGTCNNNTGCGTCCGGGAACGA 24 23 T140-f ACGTTCACCAACATCNNNGGCGAAACCATCACT 25 24 T140-r AGTGATGGTTTCGCCNNNGATGTTGGTGAACGT 26 25 M147-f GAAACCATCACTACCNNNAAACTGGGTTTCGTT 27 26 M147-r AACGAAACCCAGTTTNNNGGTAGTGATGGTTTC 28 27 L149-f CATCACTACCATGAAANNNGGTTTCGTTCTGCTGC 29 28 L149-r GCAGCAGAACGAAACCNNNTTTCATGGTAGTGATG 30 29 G165-f ACCAAATGCACTGATNNNGAATATGAACTGGCA 31 30 G165-r TGCCAGTTCATATTCNNNATCAGTGCATTTGGT 32 31 V173-f GAACTGGCAAAAATGNNNATGCGCAAGGGCTCT 33 32 V173-r AGAGCCCTTGCGCATNNNCATTTTTGCCAGTTC 34 33 K176-f CAAAAATGGTTATGCGCNNNGGCTCTCTGTTCCAA 35 AAC 34 K176-r GTTTTGGAACAGAGAGCCNNNGCGCATAACCATTT 36 TTG 35 K199-f GGCTACGGCTCTATCNNNAAAGTTTATATTTGG 37 36 K199-r CCAAATATAAACTTTNNNGATAGAGCCGTAGCC 38 37 K209-f TGGACCGATCAAGACNNNATATTCCTGCCGGAC 39 38 K209-r GTCCGGCAGGAATATNNNGTCTTGATCGGTCCA 40 39 Q216-f TTCCTGCCGGACTTCNNNCGCTGGCAAATTGCA 41 40 Q216-r TGCAATTTGCCAGCGNNNGAAGTCCGGCAGGAA 42 41 K224-f CAAATTGCAAACTACNNNCCGGACAAGGTTTATC 43 42 K224-r GATAAACCTTGTCCGGNNNGTAGTTTGCAATTTG 44 Wherein, N in the sequences of the present application represents A, T, G or C.
Example 2: High Throughput Screening
(80) Screening was according to the following experimental steps:
(81) 1. Clones were selected and inoculating on a 96-well plate 1 (500 μL TB medium per well), and cultured overnight at 30° C.;
(82) 2. Media were transferred a new 96-well plate 2 (800 μL TB medium per well, 0.15 mM IPTG), wherein 100 μL medium from 96-well plate 1 was inoculated to 96-well plate 2, and cultured overnight at 30° C.
(83) 3. The strain in 96-well plate 2 was collected, 100 μL BugBuster Protein Extraction Reagent (Novagen) was added. The mixture was treated for 30 min, and then centrifuged to obtain the supernatant.
(84) 4. The enzyme solution was diluted to a reasonable multiple.
(85) 5. The elisa plate was prepared with 200 μL reaction system containing 150 μL of 50 mM citrate buffer (containing 15% methanol), 5 μL of substrate SCMB (0.05 g/mL dissolved in methanol), 5 μL of enzyme solution, and the mixture was reacted for 2 min. Then 10 μL Solution I (100 mM N-chlorosuccinimide) was immediately added and reacted for 2 min. Then 30 μL Solution II (65 mM isonicotinic acid and 125 mM barbituric acid, which were dissolved in 0.2 M NaOH) was added. The reading was taken at a wavelength of 600 nm after 20 min.
(86) 6. Using the wild type as the reference system, the clone with strongest absorbance at 600 nm was selected as the most positive clone, and its enzyme activity and specific enzyme activity were analyzed.
(87) Enzyme activity assay: 1 U of enzyme activity was defined as the amount of enzyme required to catalyze the production of 1 μmol ether aldehyde per minute.
(88) The enzyme activity assay was carried out by referring to the method reported by Selmar (Analytical Biochemistry 166 (1987), 208-211), with 10 mM m-phenoxybenzonitrile, 20 uL methanol, 20 mM citrate buffer (pH 5.0), and 10 uL enzyme solution. The above reaction solution was incubated at 25° C., and the change in absorbance at OD 310 nm was measured within 1-5 min. The curve of time (min) and absorbance change was drawn. The slope of the curve of the experimental group was set to ΔK, and the slope of the control group was zero. Under the same condition and without adding any enzyme solution, the change in absorbance at 310 nm wavelength, in 25° C., was recorded as a control group. The control group should not have a change in absorbance.
(89) The slope of concentration standard curve of m-oxybenzaldehyde was K. The enzyme activity was calculated according to the formula:
(90)
(91) Determination of protein concentration: The absorption at OD280 is determined according to the standard procedure of Nanodrop2000, and the concentration c (mg/mL) of protein in the lysate is obtained;
(92) Calculation of specific enzyme activity: specific enzyme activity (U/mg)=enzyme activity/protein concentration.
Example 3: High-Density Fermentation
(93) The deoxyribonucleic acid sequence encoding the mutant enzyme was synthesized, and ligated into the NdeI and XhoI sites of the pET28a vector (purchased from Novagen) to obtain an E. coli plasmid pET28-MeHNL6 containing a T7 promoter. The plasmid was transformed into E. coli BL21 (DE3) (purchased from Invitrogene), and the corresponding strain was obtained on a Kana-resistant plate. Then the strain was inoculated into LB medium and cultured overnight at 37° C. The strain was preserved with 20% glycerol.
(94) The strain was inoculated into a 1 L shake flask containing 200 mL LB medium, and cultured at 37° C., 180-220 rpm for 10-16 h. The above cultured seeds were inoculated into a 3 L upper tank fermentation medium (M9) (glucose 4 g/L, disodium hydrogen phosphate 12.8 g/L, potassium dihydrogen phosphate 3 g/L, ammonium chloride 1 g/L, sodium sulfate 0.5 g/L, calcium chloride 0.0152 g/L, magnesium chloride hexahydrate 0.41 g/L) at a ratio of 10% (v/v). The mixture was incubated at 25-35° C., 300-800 rpm, with 2-6 L/min air flow. After 6-10 h of culture, IPTG was added for induction for 10-12 h, and a supplementary medium containing 60% glycerol was added at a rate of 5-20 mL/h until the end of the fermentation. Supplementary medium was added for several hours until the OD.sub.600 reached 80-100. The fermentation was stopped and the strains were collected by 5 000 rpm centrifugation. The enzyme activity was measured after lysing the strains. Gel electrophoresis assay result was as expected.
(95) Fermentation Preparation for Wild Type and Some of Mutants
(96) It has been found that under high temperature fermentation (about 25-37° C.), the wild type (SEQ ID NO. 1) and some of mutants (such as mutant 2) expressed by the engineered bacteria have extremely low activity, and the wild type has substantially no activity.
(97) Therefore, the fermentation method for wild type and some of mutants (such as mutant 2) is basically the same as above, except that the temperature is maintained at a low level (about 12-16° C.) during the fermentation.
Example 4: Purification of Enzyme
(98) The enzyme obtained by fermentation can be purified using a method conventional in the art. The enzyme obtained by fermentation can also be purified by the following method, for example:
(99) 1 L fermentation broth which containing strains having wild-type sequence was centrifuged (4000 rpm) to obtain 50 g cells. The cells were resuspended in 20 mM sodium phosphate buffer (pH 5.5) in a ratio of 4 mL buffer per gram cells. The cells were crushed with a high-pressure homogenizer (with a pressure of 800-1000 bar). Polyacrylamide was added for flocculation (1-2‰), and the supernatant was collected after centrifugation at 4000 rpm. The supernatant was concentrated 8 times with an ultrafiltration membrane (with a protein concentration of 93 mg/mL) and the enzyme activity was 198 U/mL.
(100) 1 L fermentation broth which containing strains having sequence of mutant 9 was centrifuged (4000 rpm) to obtain 50 g cells. The cells were resuspended in 20 mM potassium citrate buffer (pH 5.5) in a ratio of 4 mL buffer per gram cells. The cells were crushed with a high-pressure homogenizer (with a pressure of 800-1000 bar). Polyacrylamide was added for flocculation (1-2‰), and the supernatant was collected after centrifugation at 4000 rpm. The supernatant was concentrated 5 times with an ultrafiltration membrane (with a protein concentration of 65 mg/mL) and the enzyme activity was 522 U/mL.
(101) 1 L fermentation broth which containing strains having sequence of mutant 27 was centrifuged (4000 rpm) to obtain 50 g cells. The cells were resuspended in 20 mM potassium phosphate buffer (pH 5.5) in a ratio of 4 mL buffer per gram cells. The cells were crushed with a high-pressure homogenizer (with a pressure of 800-1000 bar). Polyacrylamide was added for flocculation (1-2‰), and the supernatant was collected after centrifugation at 4000 rpm. The supernatant was concentrated 5 times with an ultrafiltration membrane (with a protein concentration of 69 mg/mL) and the enzyme activity was 687 U/mL.
(102) 1 L fermentation broth which containing strains having sequence of mutant 55 was centrifuged (4000 rpm) to obtain 50 g cells. The cells were resuspended in 50 mM sodium citrate buffer (pH 5.5) in a ratio of 4 mL buffer per gram cells. The cells were crushed with a high-pressure homogenizer (with a pressure of 800-1000 bar). Polyacrylamide was added for flocculation (1-2‰), and the supernatant was collected after centrifugation at 4000 rpm. The supernatant was concentrated 5 times with an ultrafiltration membrane (with a protein concentration of 62 mg/mL) and the enzyme activity was 958 U/mL.
(103) 1 L fermentation broth which containing strains having sequence of mutant 72 was centrifuged (4000 rpm) to obtain 50 g cells. The cells were resuspended in 20 mM sodium tartrate buffer (pH 5.0) in a ratio of 4 mL buffer per gram cells. The cells were crushed with a high-pressure homogenizer (with a pressure of 800-1000 bar). Polyethyleneimine was added for flocculation (1-2‰), and the supernatant was collected after centrifugation at 4000 rpm. The supernatant was concentrated 5 times with an ultrafiltration membrane (with a protein concentration of 75 mg/mL) and the enzyme activity was 1530 U/mL.
(104) 1 L fermentation broth which containing strains having sequence of mutant 113 was centrifuged (4000 rpm) to obtain 50 g cells. The cells were resuspended in 20 mM sodium citrate-20 mM sodium phosphate buffer (pH 5.0) in a ratio of 4 mL buffer per gram cells. The cells were crushed with a high-pressure homogenizer (with a pressure of 800-1000 bar). Polyethyleneimine was added for flocculation (1-2‰), and the supernatant was collected after centrifugation at 4000 rpm. The supernatant was concentrated 3 times with an ultrafiltration membrane (with a protein concentration of 64 mg/mL) and the enzyme activity was 1613 U/mL.
(105) 1 L fermentation broth which containing strains having sequence of mutant 135 was centrifuged (4000 rpm) to obtain 50 g cells. The cells were resuspended in 20 mM sodium citrate−20 mM sodium phosphate buffer (pH 5.2) in a ratio of 4 mL buffer per gram cells. The cells were crushed with a high-pressure homogenizer (with a pressure of 800-1000 bar). Polyethyleneimine was added for flocculation (1-2‰), and the supernatant was collected after centrifugation at 4000 rpm. The supernatant was concentrated 3 times with an ultrafiltration membrane (with a protein concentration of 55 mg/mL) and the enzyme activity was 1876 U/mL.
(106) 1 L fermentation broth which containing strains having sequence of mutant 149 was centrifuged (4000 rpm) to obtain 50 g cells. The cells were resuspended in 20 mM potassium phosphate buffer (pH 5.5) in a ratio of 4 mL buffer per gram cells. The cells were crushed with a high-pressure homogenizer (with a pressure of 800-1000 bar). Polyacrylamide was added for flocculation (1-2‰), and the supernatant was collected after centrifugation at 4000 rpm. The supernatant was concentrated 6 times with an ultrafiltration membrane (with a protein concentration of 56 mg/mL) and the enzyme activity was 680 U/mL.
(107) The results of the specific enzyme activity are shown in
(108) The results of enzyme activity assay of the wild type and the selected mutant enzymes of the present invention are shown in Table 2.
(109) TABLE-US-00007 TABLE 2 Mutant enzyme Enzyme number Mutation site activity 1 WT * 2 H103M, W128A * 3 L36A, H103L, W128A ** 4 V94E, H103L, W128A ** 5 L36C, H103L, W128A ** 6 L36Y, H103L, W128A ** 9 V94L, H103L, W128A ** 10 L36Q, H103L, W128A ** 13 C81Y, H103L, W128A ** 18 V94Q, H103L, W128A ** 20 V94H, H103L, W128A ** 21 H103L, W128A, V173T ** 22 C81Y, H103L, W128A ** 27 C81V, H103L, W128A ** 29 H103L, W128A, V173I ** 30 V94T, H103L, W128A ** 31 H103L, W128A, V173C ** 34 H103L, W128A, 149A ** 35 V94F, H103L, W128A ** 36 H103L, W128A, V173A ** 37 L36I, H103L, W128A ** 38 H103L, W128A, V173S ** 39 L36F, H103L, W128A ** 40 H103S ** 41 C81I, H103L, W128A *** 42 V94A, H103L, W128A *** 43 V2P, H103L, W128A *** 44 V2W, H103L, W128A *** 45 V2T, H103L, W128A *** 46 V94S, H103L, W128A, K209R *** 47 H103L, W128A, V173L, K209C *** 48 V94R, H103L, W128A, K209C *** 49 H103V *** 50 H103L, W128A, G165T *** 51 H103L, W128A, V173L, K209S *** 52 V2H, H103L, W128A *** 53 H103L, W128A, K224T *** 54 V2D, H103L, W128A *** 55 V94G, H103L, W128A *** 56 V2P, C81A H103L, W128A, L149C *** 57 V2S, H103L, W128A *** 58 H103L, W128A, K224A *** 59 V2Q, H103L, W128A *** 60 H103L, W128A, K199P, K176P *** 61 V2R, H103L, W128A *** 62 V94R, H103L, W128A, V173L *** 63 H103I *** 64 H103L, W128A, K199P *** 65 H103L, W128A, K176P *** 66 V94C, H103L, W128A *** 67 H103L, W128A, K224N *** 68 H103L, W128A, K224D *** 69 V94S, H103L, W128A, V173L **** 70 H103L, W128A, K199P, K224P **** 71 V2C, H103L, W128A **** 72 H103L, W128A **** 73 H103L, W128A, K224P **** 74 H103L, W128A, V173L **** 75 H103L, W128A, K224H **** 76 H103L, W128A, K224I **** 77 H103L, W128A, K224S **** 78 H103L, W128A, K224V **** 79 H103L, W128A, G165S **** 80 H103L, W128A, K176P, K224P **** 81 H103C **** 82 H103L, W128A, V173Q **** 83 H103L, W128A, K224E **** 84 V94S, H103L, W128A, K209C **** 85 H103L, W128A, K224P **** 86 H103L, W128A, T140R ***** 87 H103L ***** 88 H103L, W128A, T140S ***** 89 H103L, W128A, T140W ***** 90 H103L, W128A, T140D ***** 91 V94S, H103L, W128A, G165D ***** 92 H103L, W128A, T140I ***** 93 H103L, W128A, T140K ***** 94 H103L, W128A, G165P ***** 95 H103L, W128A, T140G ***** 96 H103L, W128A, T140H ***** 97 V94R, H103L, W128A ***** 98 H103L, W128A, K209F ***** 99 H103L, W128A, G165D ***** 100 V94R, H103L, W128A, K209R ***** 101 V94R, H103L, W128A, G165D ***** 102 V94S, H103L, W128A ***** 103 H103L, W128A, K209L ***** 104 C81A, H103L,W128A ***** 105 H103L, W128A, K209M ***** 106 H103L, W128A, K209G ***** 107 H103L, W128A, K209A ***** 108 H103L, W128A, K209S ***** 109 H103L, W128A, K209C ***** 110 C81A, H103L, W128A, K224P ***** 111 C81A, H103L, W128A ***** 112 H103L, W128A, K209R ***** 113 V2I, H103L, W128A ***** 114 C81A, H103L, W128A, K176P ***** 115 V2A, C81A, H103L, W128A, L149C ***** 116 L36A, H103L, W128A ***** 117 V2G, C81A, H103L, W128A ****** 118 V2L, C81A, H103L, W128A ****** 119 V2P, C81A, H103L, W128A ****** 120 V2H, C81A, H103L, W128A ****** 121 V2R, C81A, H103L, W128A ****** 122 V2M, C81A, H103L, W128A ****** 123 V2S, C81A, H103L, W128A ****** 124 V2C, C81A, H103L, W128A ****** 125 V2W, C81A, H103L, W128A ****** 126 V2T, C81A, H103L, W128A ****** 127 V2Q, C81A, H103L, W128A ****** 128 V2A, C81A, H103L, W128A ****** 129 C81A, H103L, W128A, L149P ****** 130 C81A, H103L, W128A, L149I ****** 131 C81A, H103L, W128A, L149C ****** 132 C81A, V94P, H103L, W128A, K176P ****** 133 C81A, 94R, H103L, W128A, L149P ****** 134 C81A, 94K, H103L, W128A, L149P ****** 135 V2P, C81A, H103L, W128A, L149C ****** 136 H103I, W128A **** 137 H103V, W128A **** 138 H103C, W128A **** 139 H103S, W128A **** 140 H103I, W128Y ** 141 H103L, W128N *** 142 H103L, W128G *** 143 H103L, W128Y *** 144 H103I, W128N *** 145 H103I, W128G *** 146 H103C, W128V *** 147 H103C, W128G *** 148 H103C, W128Y *** 149 H103M, W128L *** Note: * represents a specific activity between 0-3.0 U/mg; ** represents a specific activity between 3.0-10.0 U/mg; *** represents a specific activity between 10.0-18.0 U/mg; **** represents a specific activity between 18.0-26.0 U/mg; ***** represents a specific activity between 26.0-34.0 U/mg; ****** represents a specific activity of >34.0 U/mg.
Example 5: Biocatalytic Transformation of S-Cyanohydrin and Detection Method
(110) The biocatalytic transformation of S-cyanohydrin was carried out by adding 20 mL of cyanohydrin lyase, 10 mL of aldehyde m-PBAld, 20 mL of methyl tert-butyl ether, and 3 g of HCN to a 100 mL reaction flask, and stirring and reacting at 15° C.
(111) The detection method was as follows:
(112) The reaction was monitored by high performance liquid chromatography (HPLC). Water and acetonitrile (45:55) were used as mobile phase. The chromatographic column was ODS-18 reversed phase column. Shimadzu LC-15C high performance liquid chromatography was used. UV absorption was detected at 210 nm. The reaction system was diluted with water and acetonitrile (45:55), then injected and detected after centrifugation and filtration with a nylon membrane. In the preferred reaction system of the present invention, the reaction progress detecting by HPLC was as follow: after 1 hour of reaction, m-phenoxybenzaldehyde was detected at 17.3 min and S-configuration cyanohydrin was detected at 17.5 min.
(113) The chiral purity was analyzed by Agilent 1260 liquid chromatography under the conditions of Chiralpak AD-H column, n-hexane:ethanol (0.1% DEA)=90:10, 0.8 mL/min, and the detection wavelength was 220 nm. After comparison, the product of S-configuration prepared by the invention is identical to the target standard substance (purchased from Jiangxi Keyuan Biopharmaceutical Co., Ltd.).
(114) Typical catalytic reactions and detection results involved in the present invention are exemplified as follows:
(115) 1. Wild Type
(116) 20 mL of cyanohydrin lyase (50 mg/mL, wild type, SEQ ID NO. 1), 10 mL of aldehyde m-PBAld, 20 mL of methyl tert-butyl ether, and 3 g of HCN were added to a 100 mL reaction flask, then stirred and reacted at 15° C. for 2 hours. The reaction progress was sampled and detected every 30 minutes. The ee value was 95.9%.
(117) 2. Mutant 9
(118) 20 mL of concentrated cyanohydrin lyase (50 mg/mL), 10 mL of aldehyde m-PBAld, 20 mL of methyl tert-butyl ether, and 3 g of HCN were added to a 100 mL reaction flask, then stirred and reacted at 15° C. for 2 hours. The reaction progress was sampled and detected every 30 minutes. The ee value was 99.5%.
(119) 3. Mutant 27
(120) 20 mL of concentrated cyanohydrin lyase (50 mg/mL), 10 mL of aldehyde m-PBAld, 20 mL of methyl tert-butyl ether, and 3 g of HCN were added to a 100 mL reaction flask, then stirred and reacted at 15° C. for 2 hours. The reaction progress was sampled and detected every 30 minutes. The ee value was 97.7%.
(121) 4. Mutant 55
(122) 20 mL of concentrated cyanohydrin lyase (50 mg/mL), 10 mL of aldehyde m-PBAld, 20 mL of methyl tert-butyl ether, and 4.5 g of acetone cyanohydrin were added to a 100 mL reaction flask, then stirred and reacted at 15° C. for 2 hours. The reaction progress was sampled and detected every 30 minutes. The ee value was 98.1%.
(123) 5. Mutant 72
(124) 20 mL of concentrated cyanohydrin lyase (50 mg/mL), 10 mL of aldehyde m-PBAld, 20 mL of methyl tert-butyl ether, 5 g of NaCN, and 1 mL of concentrated sulfuric acid were added to a 100 mL reaction flask, then stirred and reacted at 15° C. for 2 hours. The reaction progress was sampled and detected every 30 minutes. The ee value was 97.8%.
(125) 6. Mutant 113
(126) 20 mL of concentrated cyanohydrin lyase (50 mg/mL, mutant SEQ ID NO. 113), 10 mL of aldehyde m-PBAld, 20 mL of methyl tert-butyl ether, 5 g of KCN, and 1 mL of concentrated sulfuric acid were added to a 100 mL reaction flask, then stirred and reacted at 15° C. for 2 hours. The reaction progress was sampled and detected every 30 minutes. The ee value was 99.1%.
(127) 7. Mutant 135
(128) 20 mL of concentrated cyanohydrin lyase (50 mg/mL, mutant SEQ ID NO. 135), 10 mL of aldehyde m-PBAld, 20 mL of methyl tert-butyl ether, 3 g of HCN, and 1 mL of concentrated sulfuric acid were added to a 100 mL reaction flask, then stirred and reacted at 15° C. for 2 hours. The reaction progress was sampled and detected every 30 minutes. The ee value was 98.9%.
(129) 8. Mutant 149
(130) 20 mL of concentrated cyanohydrin lyase (50 mg/mL), 10 mL of aldehyde m-PBAld, 20 mL of methyl tert-butyl ether, and 3 g of HCN were added to a 100 mL reaction flask, then stirred and reacted at 15° C. for 2 hours. The reaction progress was sampled and detected every 30 minutes. The ee value was 99.1%.
(131) The monitoring results of the catalytic reaction are shown in
(132) All literatures mentioned in the present application are incorporated herein by reference, as though each one is individually incorporated by reference. In addition, it should also be understood that, after reading the above teachings of the present invention, those skilled in the art can make various changes or modifications, equivalents of which falls in the scope of claims as defined in the appended claims.