Process for the preparation of concentrated liquid formulations containing biomolecules
11572385 · 2023-02-07
Assignee
Inventors
- Patrick Garidel (Biberach an der Riss, DE)
- Sven Bahrenburg (Biberach an der Riss, DE)
- Torsten Schultz-Fademrecht (Aepfingen, DE)
- Andrea Eiperle (Grodt, DE)
Cpc classification
C07K1/34
CHEMISTRY; METALLURGY
International classification
C07K1/34
CHEMISTRY; METALLURGY
Abstract
It is disclosed an improved multi-step process for the preparation of a highly concentrated liquid formulation containing biomolecules comprising the steps of (a) a first ultrafiltration UF1; (b) a first diafiltration DF1; (c) a second diafiltration DF2; and (d) a second ultrafiltration UF2; wherein an aqueous solution of one or more salts, as liquid medium B, is used for step (b) and water or an aqueous solution of one or more salts, as liquid medium C, is used for step (c), wherein the one or more salts used for step (b) are the same or different from the one or more salts used for step (c) and wherein the liquid medium B has an ionic strength which is higher than the ionic strength of the liquid medium C. The process according to the present invention allows the preparation of well-defined highly concentrated formulations containing biomolecules, particularly proteins, intended for pharmaceutical or non-pharmaceutical use. Unwanted excipient(s) of the starting liquid biomolecule formulation, may be reduced under solution conditions, to very low levels or levels lower than the detection limit.
Claims
1. A process for the preparation of a concentrated liquid formulation containing biomolecules from a liquid biomolecule formulation comprising the steps of (a) a first ultrafiltration UF1; (b) a first diafiltration DF1; (c) a second diafiltration DF2; and (d) a second ultrafiltration UF2; wherein an aqueous solution of one or more salts, as liquid medium B, is used for step (b) and water or an aqueous solution of one or more salts, as liquid medium C, is used for step (c); wherein the one or more salts used for step (b) are the same or different from the one or more salts used for step (c), wherein the liquid medium B has an ionic strength which is higher than the ionic strength of the liquid medium C, and wherein the biomolecules comprise positively charged biomolecules and excipient(s) to be removed by the process comprise negatively charged excipient(s).
2. The process according to claim 1, characterized in that the liquid medium B has a high ionic strength in the range of from about 20 mM up to 6 M, or from about 100 mM to 1000 mM, or from about 150 mM to 750 mM, or from about 200 mM to 500 mM and the liquid medium C has a low ionic strength indicated in form of a concentration which is in the range of from about 0 mM to 150 mM, or from about 0 mM to 100 mM, or from about 0 mM to 75 mM, or from about 0 mM to 50 mM.
3. The process according to claim 1, characterized in that the liquid medium B has an ionic strength which is higher than the ionic strength of the liquid medium C so that the difference between the ionic strength of the liquid medium B and the ionic strength of the liquid medium C is at least about 100 mM, or at least about 200 mM, or at least about 500 mM.
4. The process according to claim 1, characterized in that the liquid biomolecule formulation used in step (a) contains a liquid medium A which is an aqueous solution and contains one or more excipients, the liquid medium A is exchanged with liquid medium C by means of liquid medium B in steps (b) and (c), whereby the liquid biomolecule formulation obtained in step (c) and (d) has a reduced content of said excipient(s).
5. The process according to claim 4, characterized in that the excipients are selected from a group consisting of excipients charged in aqueous solution; the excipients being selected from the group consisting of additives used in the preparation or processing of biomolecules; unwanted substances or ions such as impurities contained in the starting liquid biomolecule formulation; undesired side-products formed during the manufacturing process of the biomolecule; and decomposition or degradation products of starting, intermediate or end products formed during the production of the biomolecule.
6. The process according to claim 5, characterized in that the additives, unwanted substances or ions originate from cell components or debris, degradation products of bacteria such as endotoxins, DNA, RNA, undesired lipids, HCP (Host cell proteins), lipopolysaccharides (LPS) or parts thereof; sugars; detergents, negatively charged species; any kind of negatively charged ions resulting from salts.
7. The process according to claim 1, characterized in that the salts are inorganic salts.
8. The process according to claim 7, characterized in that the inorganic salt is selected from the group consisting of alkali salts and alkaline earth salts of sulfates, nitrates, phosphates, carbonates, halogenides, borates, and silicates.
9. The process according to claim 7, characterized in that the inorganic salt is a pharmaceutically acceptable salt and is selected from the group consisting of sodium salts; calcium salts; magnesium salts and combinations thereof.
10. The process according to claim 9, characterized in that the sodium salts comprise sodium halides, sodium sulfate, or sodium borate; the calcium salts comprise calcium halides, calcium sulfate, or calcium borate; the magnesium salts comprise magnesium halides, magnesium sulfate or magnesium borate.
11. The process according to claim 10, characterized in that the halides comprise chlorides.
12. The process according to claim 1, characterized in that liquid medium B comprises sodium chloride from about 150 to about 900 mM, or from about 200 to about 700 mM, or from about 400 to about 600 mM, or from about 450 to about 550 mM.
13. The process according to claim 1, characterized in that the salt comprises an organic and/or inorganic buffer.
14. The process according to claim 13, characterized in that the buffer is selected from the group consisting of N-(2-acetamido)-aminoethanesulfonic acid (ACES) and salts thereof, acetic acid and salts thereof, aconitic acid and salts thereof, adipic acid and salts thereof, ascorbic acid and salts thereof, N-(2-Acetamido)-iminodiacetic acid (ADA) and salts thereof, ammonia and salts thereof, ammonium chloride, 2-amino-2-methyl-1-propanol (AMP), 2-amino-2-methyl-1,3-propanediol, ammediol (AMPD), N-(1,1-Dimethyl-2-hydroxyethyl)-3-amino-2-hydroxypropanesulfonic acid (AMPSO) and salts thereof, N,N-bis-(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES) and salts thereof, benzoic acid and salts thereof, bicarbonates such as sodium hydrogen carbonate, N,N′-bis(2-hydroxyethyl)-glycine (bicine), Tris buffers such as tris(hydroxymethyl)-aminomethane, [bis-(2-hydroxyethyl)-imino]-tris-(hydroxymethylmethane) (Bis-Tris), 1,3-bis[tris(hydroxymethyl)-methylamino]propane (Bis-Tris-Propane), boric acid and salts thereof, dimethylarsinic acid (Cacodylate) and salts thereof, 3-(cyclohexylamino)-propanesulfonic acid (CAPS) and salts thereof, 3-(cyclohexylamino)-2-hydroxy-1-propanesulfonic acid (CAPSO) and salts thereof, carbonic acid and salts thereof, carbonates such as sodium carbonate, cyclohexylaminoethanesulfonic acid (CHES) and salts thereof, citric acid and salts thereof, 3-[N-bis(hydroxyethyl)amino]-2-hydroxypropanesulfonic acid (DIPSO) and salts thereof, formic acid and salts thereof, gluconic acid and salts thereof, glyceric acid and salts thereof, glutamic acid and salts thereof, glycines such as glycylglycine, N-(2-hydroxyethyl)-piperazine-N′-ethanesulfonic acid (HEPES) and salts thereof, N-(2-hydroxyethyl)-piperazine-N′-3-propanesulfonic acid (HEPPS, EPPS) and salts thereof, N-(2-hydroxyethyl)-piperazine-N′-2-hydroxypropanesulfonic acid (HEPPSO) and salts thereof, imidazoles, lactic acid and salts thereof, malic acid and salt thereof, maleic acid and salts thereof, 2-(N-morpholino)-ethanesulfonic acid (MES) and salts thereof, 3-(N-morpholino)-propanesulfonic acid (MOPS) and salts thereof, 3-(N-morpholino)-2-hydroxypropanesulfonic acid (MOPSO) and salts thereof, phosphoric acid and salts thereof, piperazine-N,N′-bis(2-ethanesulfonic acid) (PIPES) and salts thereof, piperazine-N,N′-bis(2-hydroxypropanesulfonic acid) (POPSO) and salts thereof, pyridines, succinic acid and salts thereof, 3-{[tris(hydroxymethyl)-methyl]-amino}-propanesulfonic acid (TAPS) and salts thereof, 3-[N-tris(hydroxymethyl)-methylamino]-2-hydroxypropanesulfonic acid (TAPSO) and salts thereof, tartaric acid and salts thereof, taurine (2-aminoethanesulfonic acid, AES and salts thereof), triethanolamine (TEA), 2-[tris(hydroxymethyl)-methylamino]-ethanesulfonic acid (TES) and salts thereof, and N-[tris(hydroxymethyl)-methyl]-glycine (tricine).
15. The process according to claim 13, characterized in that the buffer salt or the buffer being a biological buffer which is an amino acid, in an aqueous solution, selected from the group consisting of alanine, arginine, asparagine, aspartic acid, cysteine, glutamic acid, glutamine, glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, and valine; or the buffer salt or the buffer being a biological buffer which is selected from the group consisting of phosphoric acid and salts thereof, citric acid and salts thereof, tris, succinic acid and salts thereof, malic acid and salts thereof, tartaric and salts thereof, acetic acid and salts thereof, lactic acid and salts thereof, aconitic acid and salts thereof, ascorbic acid and salts thereof, glutamic acid and salts thereof, ammoniumchloride, triethanolamine, alanine, arginine, glutamine, glycine, histidine, lysine, and proline.
16. The process according to claim 1, characterized in that the liquid medium C consists essentially of water.
17. The process according to claim 1, characterized in that the biomolecules comprise a positively charged protein.
18. The process according to claim 1, characterized in that the process step (b) is repeated several times prior to step (c), or the exchange of liquid medium B is performed with x medium cycles, wherein x=2 to 10, or x=2 to 8, or x=2 to 6.
19. The process according to claim 1, characterized in that the process step (c) is repeated several times prior to step (d), or the exchange of liquid medium C is performed with y medium cycles, wherein y=2 to 10, or y=2 to 8, or y=2 to 6.
20. The process according to claim 1, characterized in that the ultrafiltration UF1 of step (a) is used to concentrate the liquid biomolecule formulation, up to about 10%-70%, or about 15%-60%, or about 25%-50% compared with the initial concentration of the liquid biomolecule formulation.
21. The process according to claim 1, characterized in that the ultrafiltration UF2 of step (d) is used to concentrate the liquid biomolecule formulation to the desired value.
22. The process according to claim 1, characterized in that step (b) and step (c) follow directly one after the other whereby no intermediate process step is performed in between, and/or step (a) and step (b) follow directly one after the other whereby no intermediate process step is performed in between, and/or step (c) and step (d) directly follow one after the other whereby no intermediate process step is performed in between.
23. The process according to claim 1, characterized in that the biomolecules are selected from the group consisting of small molecules, monomers, biopolymers; lipids, vitamins; hormones, neurotransmitter; amino acids, proteins, and peptides.
24. The process according to claim 1, characterized in that the process steps (a) to (d) are performed at room temperature of about 20° C. to about 25° C.
25. The process according to claim 1, characterized in that the process steps (a) to (d) are performed using a tangential flow filtration (TFF) system or a centrifugal filtration system.
26. A concentrated liquid formulation containing biomolecules prepared by a process according to claim 1.
27. The process according to claim 1, characterized in that the salts are organic salts.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
(1) The detailed process description of the experiments is given in connection with the attached drawings which are incorporated in and constitute a part of the specification, illustrating preferred embodiments of the invention without limitation to the specific embodiments described. The Drawings together with the general description and detailed description serve to explain the principles of the present invention. The drawings show as follows
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EXAMPLES
(25) In all examples the water used is MilliQ® water.
(26) The symbol “˜” followed by a number shall be understood in that the number has been rounded up to the nearest whole number.
Example 1
(27) -Succinate-Acetate Exchange-
(28) According to example 1 an embodiment of the 4-step UF/DF process according to the present invention was applied to concentrate a protein and replace initial succinate buffer ions with low levels of acetate. Thus, a “proteinium-acetate” formulation is generated, with acetate as counterion.
(29) The used biomolecule (designated as “Prot1” hereafter) was a monoclonal antibody comprising this heavy chain (amino acid single letter code, N to C-terminus):
(30) TABLE-US-00002 QVQLVQSGAEVKKPGSSVKVSCKASGYTFTDQTIHWMRQAPGQGLEWIGY IYPRDDSPKYNENFKGKVTITADKSTSTAYMELSSLRSEDTAVYYCAIPD RSGYAWFIYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQT YICNVNHKPSNTKVDKRVEPKSCDKTHTCPPCPAPEAAGGPSVFLFPPKP KDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYN STYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ VYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPV LDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG
and this light chain (amino acid single letter code, N to C-terminus):
(31) TABLE-US-00003 DIQMTQSPSSLSASVGDRVTITCKASRDVAIAVAWYQQKPGKVPKLLIYW ASTRHTGVPSRFSGSGSRTDFTLTISSLQPEDVADYFCHQYSSYPFTFGS GTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKV DNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG LSSPVTKSFNRGEC
(32) Both sequences are listed as SEQ ID NO. 1 (“Artificial Sequence”, “monoclonal antibody, heavy chain”) and SEQ ID NO. 2 (“Artificial Sequence”, “monoclonal antibody, light chain”) in the accompanying sequence listing.
(33) The detailed conditions of example 1 were as follows:
(34) UF1: 10 mg.Math.ml.sup.−1 Prot1/25 mM Succinate/125 mM NaCl/water/pH 6.5;
(35) DF1: 4 cycles with 500 mM Acetate/water/pH 5.0;
(36) DF2: 6 cycles with water;
(37) UF2 (Product Pool): 150 mg.Math.ml.sup.−1 Prot1/26 mM Acetate/water/pH 5.9.
(38) Therefore, in example 1, the starting solution is 10 mg/mL Protein 1 mAb in ultrapure water which contains 25 mM sodium succinate and 125 mM sodium chloride at pH 6.5.
(39)
(40) The x axis coordinates the process steps and the corresponding pH. The respective points on the x axis are: initial, end of UF1, cycle #1/#2/#3/#4 of DF1, cycle #2/#4/#6 of DF2 and the final product (ProdPool) at the end of UF2.
(41)
(42) As can be seen from
(43) In DF2, six cycles of diafiltration against pure water at pH 6 then remove the last traces of succinate while greatly reducing the residual DF1 acetate, which falls to ˜9 mM.
(44) Complete removal of acetate is neither possible nor advisable. At the tested pH conditions, Protein 1 is positively charged; the residual acetate anions function as counterions, at an acetate/Protein 1 ratio of ˜30:1 at the end of DF2.
(45) UF2 follows, concentrating Protein 1 to ≥150 mg/mL. With this volume reduction, acetate concentration increases to ˜26 mM. The resulting acetate/protein ratio is ˜26:1, very close to the level for the 40 mg/mL Protein 1 solution at the end of DF2: this is the proportion of acetate counterions required to maintain the system's charge neutrality. The observed difference between 30:1 (after DF2) and 26:1 (after UF2) may be attributed to minor errors in measuring anion and/or protein concentrations.
(46) At this stage, the product pool (final product) is 150 mg/mL Protein 1 mAb at pH 5.9 with ˜20 mM acetate serving as counterions. Therefore, the pH of the product pool is determined and maintained by the protein's own self-buffering capacity and the counterion (Karow et al. 2013, loc.cit.).
(47) Product quality is monitored via opalescence and HP-SEC monomer content.
(48) Conductivity is used for process control. As expected, after DF2, conductivity decreases from 15 millisiemens per centimetre (mS.Math.cm.sup.−1) to close to 1 mS.Math.cm.sup.−1. During UF1, opalescence increases from 8 FNU at 10 mg/mL to more than 20 FNU at 40 mg/mL in the presence of succinate. Exchanging succinate for acetate in DF1 reduces opalescence to ˜17 FNU. Removing acetate during DF2 further reduces opalescence to 3-4 FNU. After the final concentration of Protein 1 in UF2, opalescence increases again, but only to 6-7 FNU (cf.
(49)
Example 2
(50) -Succinate-Acetate Exchange with Changed pH in DF1-
(51) According to example 2 an embodiment of the 4-step UF/DF process according to the present invention was applied to concentrate a protein and replace initial succinate buffer ions with low levels of acetate, wherein the pH in the DF1 step was changed.
(52) The detailed conditions of example 2 were as follows:
(53) UF1: 10 mg.Math.ml.sup.−1 Prot1/25 mM Succinate/125 mM NaCl/water/pH 6.5;
(54) DF1: 4 cycles with 500 mM Acetate/water/pH 6.0;
(55) DF2: 6 cycles with water;
(56) UF2 (Product Pool): 138 mg.Math.ml.sup.−1 Prot1/20 mM Acetate/water/pH 6.4.
(57)
(58) The x axis coordinates the process steps and the corresponding pH. The respective points on the x axis are: initial, end of UF1, cycle #1/#3/#4 of DF1, cycle #2/#6 of DF2 and the final product (ProdPool) at the end of UF2.
(59)
(60) This embodiment of the four-step UF/DF process of example 1 was repeated but with a change in the DF1 step, i.e. diafiltering against 500 mM sodium acetate at pH 6 rather than pH 5 (
(61) The one-unit increase to pH 6 in DF1 leads to slightly higher opalescence than in example 1. The monomer content remains unchanged throughout, at the same level as in example 1 (
(62)
Example 3
(63) -Citrate-Chloride Exchange-
(64) According to example 3 an embodiment of the 4-step UF/DF process according to the present invention was applied to concentrate a protein and replace initial citrate buffer ions with chloride.
(65) The detailed conditions of example 3 were as follows:
(66) UF1: 10 mg ml.sup.−1 Prot1/48 mM Citrate/water/pH 6.1;
(67) DF1:4 cycles with 500 mM Sodium Chloride/water/pH 6.0;
(68) DF2: 6 cycles with water;
(69) UF2 (Product Pool): 144 mg.Math.ml.sup.−1 Prot1/20 mM Chloride/water/pH 5.8.
(70)
(71) The x axis coordinates the process steps and the corresponding pH. The respective points on the x axis are: initial, end of UF1, end of DF1, end of DF2 and the final product (ProdPool) at the end of UF2.
(72)
(73) In example 3, citrate was cleared and exchanged for chloride (
(74) After UF1 concentrated the protein to 40 mg/mL mAb, DF1 is run against 500 mM sodium chloride at pH 6.0. After 4 diafiltration cycles, citrate concentration is reduced to 2 mM.
(75) Six DF2 diafiltration cycles against pure water at pH 6 are then sufficient to fully remove all citrate. With the current process it is thus possible to fully reduce citrate without resorting to 20, 30, or 40 diafiltration cycles that might damage the protein.
(76) The final product pool is 144 mg/mL Protein 1 at pH 5.8 with 20 mM chloride anions as counterions (
(77) The indices of product quality (
(78)
Example 4
(79) -Citrate-Acetate Exchange-
(80) According to example 4 an embodiment of the 4-step UF/DF process according to the present invention was applied to concentrate a protein and replace initial citrate buffer ions with acetate.
(81) The detailed conditions of example 4 were as follows:
(82) UF1: 10 mg ml.sup.−1 Prot1/48 mM Citrate/water/pH 6.1;
(83) DF1: 4 cycles with 500 mM Acetate/water/pH 6.0;
(84) DF2: 6 cycles with water;
(85) UF2 (Product Pool): 160 mg.Math.ml.sup.−1 Prot1/23 mM Acetate/water/pH 6.4.
(86)
(87) The x axis coordinates the process steps and the corresponding pH. The respective points on the x axis are: initial, end of UF1, end of DF2, and the final product (ProdPool) at the end of UF2.
(88)
(89) In example 4, the initial citrate buffer is exchanged for acetate and cleared (
(90) In DF1, 40 mg/mL protein solution is diafiltered against 500 mM sodium acetate at pH 6.0. The citrate is easily removed, falling below the detection limit after six DF2 cycles. And after UF2, the final product pool is 160 mg/mL Protein 1 at pH 6.4 with 23 mM acetate counterions (for an acetate/protein ratio of about 22:1).
(91) Under these UF/DF buffer conditions, monomer content decreased by about 0.9% from initial solution to final product pool (
(92)
Example 5
(93) -Succinate-Chloride Exchange-
(94) According to example 5 an embodiment of the 4-step UF/DF process according to the present invention was applied to concentrate a protein and replace initial succinate buffer ions with chloride.
(95) The detailed conditions of example 5 were as follows:
(96) UF1: 10 mg.Math.ml.sup.−1 Prot1/25 mM Succinate/125 mM NaCl/water/pH 6.5;
(97) DF1: 4 cycles with 500 mM NaCl/water/pH 6.2;
(98) DF2: 6 cycles with water;
(99) UF2 (Product Pool): 157 mg ml.sup.−1 Prot1/18 mM Chloride/water/pH 6.4.
(100)
(101) The x axis coordinates the process steps and the corresponding pH. The respective points on the x axis are: initial, end of UF1, end of DF1, end of DF2 and the final product (ProdPool) at the end of UF2.
Example 6
(102) -Acetate-Chloride Exchange-
(103) According to example 6 an embodiment of the 4-step UF/DF process according to the present invention was applied to concentrate a protein and replace initial acetate buffer ions with chloride.
(104) The detailed conditions of example 6 were as follows:
(105) UF1: 11 mg.Math.ml.sup.−1 Prot1/139 mM Acetate/150 mM NaCl/water/pH 5.8;
(106) DF1: 4 cycles with 500 mM NaCl/water/pH 6.0;
(107) DF2: 6 cycles with water;
(108) UF2 (Product Pool): 157 mg.Math.ml.sup.−1 Prot1/23 mM Chloride/water/pH 5.7.
(109)
(110) The x axis coordinates the process steps and the corresponding pH. The respective points on the x axis are: initial, end of UF1, end of DF1, end of DF2, and the final product (ProdPool) at the end of UF2.
(111) In the examples 5 and 6 the exchange of chloride for succinate (
Example 7
(112) -Phosphate-Succinate Exchange-
(113) According to example 7 an embodiment of the 4-step UF/DF process according to the present invention was applied to concentrate a protein and replace initial phosphate buffer ions with succinate.
(114) A second antibody, the IgG1 mAb Protein 2, was tested to investigate double-diafiltration UF/DF performance with another protein (
(115) The detailed conditions of example 7 were as follows:
(116) UF1: 20 mg ml.sup.−1 Prot2/13 mM Phosphate/146 mM Sucrose/water/pH 7.3;
(117) DF1: 4 cycles with 500 mM Succinate/water/pH 5.7;
(118) DF2: 6 cycles with water;
(119) UF2 (Product Pool): 89 mg ml.sup.−1 Prot2/4 mM Succinate/water/pH 6.3.
(120)
(121) The x axis coordinates the process steps and the corresponding pH. The respective points on the x axis are: initial, end of UF1, cycle #1/#2/#3/#4 of DF1, cycle #1/#2/#3/#4/#5/#6 of DF2 and the final product (ProdPool) at the end of UF2.
(122)
(123) Example 7 (
(124) Succinate is associated with a strong increase of opalescence and aggregation (
(125)
Example 8
(126) -Phosphate-Citrate Exchange-
(127) According to example 8 an embodiment of the 4-step UF/DF process according to the present invention was applied to concentrate a protein and replace initial phosphate buffer ions with citrate.
(128) The detailed conditions of example 8 were as follows:
(129) UF1: 20 mg.Math.ml.sup.−1 Prot2/13 mM Phosphate/146 mM Sucrose/water/pH 7.3;
(130) DF1: 4 cycles with 500 mM Citrate/water/pH 6.0;
(131) DF2: 6 cycles with water;
(132) UF2 (Product Pool): 64 mg.Math.ml.sup.−1 Prot2/1.5 mM Citrate/water/pH 7.0.
(133)
(134) The x axis coordinates the process steps and the corresponding pH. The respective points on the x axis are: initial, end of UF1, cycle #1/#2/#3/#4 of DF1, cycle #1/#2/#3/#4/#5/#6 of DF2 and the final product (ProdPool) at the end of UF2.
Example 9
(135) -Phosphate-Chloride Exchange-
(136) According to example 9 an embodiment of the 4-step UF/DF process according to the present invention was applied to concentrate a protein and replace initial phosphate buffer ions with chloride.
(137) The detailed conditions of example 9 were as follows:
(138) UF1: 20 mg.Math.ml.sup.−1 Prot2/13 mM Phosphate/146 mM Sucrose/water/pH 7.3;
(139) DF1: 4 cycles with 500 mM NaCl/water/pH 7.0;
(140) DF2: 6 cycles with water;
(141) UF2 (Product Pool): 87 mg.Math.ml.sup.−1 Prot2/3 mM Chloride/water/pH 7.0.
(142)
(143) The x axis coordinates the process steps and the corresponding pH. The respective points on the x axis are: initial, end of UF1, cycle #1/#2/#3/#4 of DF1, cycle #1/#2/#3/#4/#5/#6 of DF2 and the final product (ProdPool) at the end of UF2.
(144) Phosphate can be completely removed by exchange with either citrate or chloride (
Example 10
(145) -Succinate-Chloride Exchange-
(146) According to example 10 an embodiment of the 4-step UF/DF process according to the present invention was applied to concentrate a protein and replace initial succinate buffer ions with chloride.
(147) The detailed conditions of example 10 were as follows:
(148) UF1: 8 mg ml.sup.−1 Prot3/25 mM Succinate/water/pH 4.4;
(149) DF1: 8 cycles with 200 mM NaCl/water/pH 4.5;
(150) DF2: 5 cycles with water;
(151) UF2 (Product Pool): 125 mg ml.sup.−1 Prot3/30 mM Chloride/water/pH 4.5.
(152)
(153) The x axis coordinates the process steps and the corresponding pH. The respective points on the x axis are: initial, end of UF1, end of DF1, end of DF2 and the final product (ProdPool) at the end of UF2.
(154)
(155) In example 10, it was tested the UF/DF process at the small scale, using Amicon ultra centrifugal filter units to condition and concentrate Protein 3, the nanobody. As example 10, it was assessed DF1 replacement of succinate with chloride (
(156) The UF1 step increased concentration to more than 45 mg/mL Protein 3. Because Protein 3 showed solubility problems at high ionic strength, DF1 was run against 200 mM sodium chloride for 8 cycles; this was sufficient to fully remove succinate.
(157) Five DF2 cycles against pure water reduced the chloride content to 13 mM. UF2 brought the concentration of the final product pool to 125 mg/mL Protein 3 in ˜30 mM chloride, with a chloride/protein ratio between 10:1 and 14:1.
(158) Under these process conditions the main peak of the ionic exchange peak is unchanged and the amount of aggregates as measured by high performance size exclusion chromatography (HP-SEC) is just reduced by 0.5%-0.8%, which is considered highly acceptable for a nanobody (
(159)
Example 11
(160) -Phosphate-Chloride Exchange-
(161) According to example 11 an embodiment of the 4-step UF/DF process according to the present invention was applied to concentrate a protein and replace initial phosphate buffer ions with chloride.
(162) The used biomolecule (designated as “Prot4” hereafter) was a Fc fusion protein.
(163) The amino acid sequence of the FC fusion protein was as follows:
(164) TABLE-US-00004 1 MGVLLTQRTL LSLVLALLFP SMASMAMHVA QPAVVLASSR GIASFVCEYA 51 SPGKATEVRV TVLRQADSQV TEVCAATYMM GNELTFLDDS ICTGTSSGNQ 101 VNLTIQGLRA MDTGLYICKV ELMYPPPYYL GIGNGTQIYV IDPEPCPDSD 151 QEPKSSDKTH TSPPSPAPEL LGGSSVFLFP PKPKDTLMIS RTPEVTCVVV 201 DVSHEDPEVK FNWYVDGVEV HNAKTKPREE QYNSTYRVVS VLTVLHQDWL 251 NGKEYKCKVS NKALPAPIEK TISKAKGQPR EPQVYTLPPS RDELTKNQVS 301 LTCLVKGFYP SDIAVEWESN GQPENNYKTT PPVLDSDGSF FLYSKLTVDK 351 SRWQQGNVFS CSVMHEALHN HYTQKSLSLS PGK
(165) The sequence is listed as SEQ ID NO. 3 (“Artificial Sequence”, “FC fusion protein”) in the accompanying sequence listing.
(166) The detailed conditions of example 11 were as follows:
(167) UF1: 5 mg.Math.ml.sup.−1 Prot4/27 mM Phosphate/5 mM Chloride/water/pH 7.6;
(168) DF1: 4 cycles with 500 mM NaCl/water/pH 7.0;
(169) DF2: 8 cycles with water/0.002 wt % NaCl;
(170) UF2 (Product Pool): 212 mg.Math.ml.sup.−1 Prot4/water/pH 7.2.
(171)
(172) The x axis indicates the process steps. The respective points on the x axis are: initial, end of UF1, cycle #1/#2/#3/#4 of DF1, cycle #1/#2/#3/#4/#5/#6/#7/#8 of DF2, sampling point #1/#2/#3/#4/#5 of UF2 and the final product (ProdPool) at the end of UF2.
(173) Phosphate can be completely removed by exchange with chloride at a final protein concentration in the product pool of 212 mg.Math.ml.sup.−1. From the initial solution at 5 mg.Math.ml.sup.−1 to the product pool at 212 mg.Math.ml.sup.−1 a total loss in monomer content of 0.2% could be observed which is considered highly acceptable for a fusion-protein (
(174)
Example 12
(175) -Acetate/Succinate/Citrate-Chloride Exchange-
(176) According to example 12 an embodiment of the 4-step UF/DF process according to the present invention was applied to concentrate a protein and replace initial acetate, succinate and citrate buffer ions with chloride.
(177) The used biomolecule (designated as “Prot5” hereafter) had a sequence which was 100% identical to the published sequence of Rituximab comprising this heavy chain (amino acid single letter code, N to C-terminus):
(178) TABLE-US-00005 1 QVQLQQPGAE LVKPGASVKM SCKASGYTFT SYNMHWVKQT PGRGLEWIGA 51 IYPGNGDTSY NQKFKGKATL TADKSSSTAY MQLSSLTSED SAVYYCARST 101 YYGGDWYFNV WGAGTTVTVS AASTKGPSVF PLAPSSKSTS GGTAALGCLV 151 KDYFPEPVTV SWNSGALTSG VHTFPAVLQS SGLYSLSSVV TVPSSSLGTQ 201 TYICNVNHKP SNTKVDKKAE PKSCDKTHTC PPCPAPELLG GPSVFLFPPK 251 PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN AKTKPREEQY 301 NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP 351 QVYTLPPSRD ELTKNQVSLT CLVKGFYPSD IAVEWESNGQ PENNYKTTPP 401 VLDSDGSFFL YSKLTVDKSR WQQGNVFSCS VMHEALHNHY TQKSLSLSPG 451 K
and this light chain (amino acid single letter code, N to C-terminus):
(179) TABLE-US-00006 1 QIVLSQSPAI LSASPGEKVT MTCRASSSVS YIHWFQQKPG SSPKPWIYAT 51 SNLASGVPVR FSGSGSGTSY SLTISRVEAE DAATYYCQQW TSNPPTFGGG 101 TKLEIKRTVA APSVFIFPPS DEQLKSGTAS VVCLLNNFYP REAKVQWKVD 151 NALQSGNSQE SVTEQDSKDS TYSLSSTLTL SKADYEKHKV YACEVTHQGL 201 SSPVTKSFNR GEC
(180) The sequences are listed as SEQ ID NO. 4 (“Artificial Sequence”, “Rituximab HC”) and SEQ ID NO. 5 (“Artificial Sequence”, “Rituximab LC”) in the accompanying sequence listing.
(181) The detailed conditions of example 12 were as follows:
(182) UF1: 16 mg.Math.ml.sup.−1 Prot5/50 mM Acetate/53 mM Succinate/51 mM Citrate/water/pH 5.0;
(183) DF1: 4 cycles with 500 mM NaCl/water/pH 7.0;
(184) DF2: 8 cycles with water/0.002 wt % NaCl;
(185) UF2 (Product Pool): 160 mg.Math.ml.sup.−1 Prot5/water/pH 4.9.
(186)
(187) The x axis indicates the process steps. The respective points on the x axis are: initial, end of UF1, cycle #1/#2/#3/#4 of DF1, cycle #1/#2/#3/#4/#5/#6/#7/#8 of DF2, and the final product (ProdPool) at the end of UF2.
(188) The three carboxylic acids acetate, succinate and citrate can be completely removed by exchange with chloride. During the final concentration step (UF2) only the chloride ions get concentrated in the same way the protein was concentrated. The concentration of the anions acetate, succinate and citrate remains under the limit of quantification (LOQ). Due to the acid pH of 4.9 at the end of UF2 the amount of the counterions chloride showed a high level of 40 mM.
(189) Under these process conditions the monomer content as measured by ultra-performance size exclusion chromatography (UP-SEC) is remaining at the initial percentage and did not change during the process.
(190)
(191) As a result, the presented examples show that the process according to the present invention can be used for antibodies as well as non-antibody formats. It allows to conditioning clearly defined formulations and by spiking additional excipients specific, well defined formulations can be generated.
Example 13
(192) Robustness of the Process
(193) -Exemplarily Demonstrated in an Acetate-Chloride Exchange-
(194) In order to determine whether the process according to the present invention represents a reliable method which leads to consistent results, the process was repeated 3 times to verify the robustness of the process. That is, at first, the process of the present invention including steps (a) to (d) comprising the order UF1/DF1/DF2/UF2 was performed and the resulting (first) biomolecule formulation investigated. Then, the same process using the same starting material and the same conditions was repeated and the resulting (second) biomolecule formulation investigated. Finally, the same process using the same starting material and the same conditions was again repeated and the resulting (third) biomolecule formulation investigated. A comparison of all three formulations show whether the results of the three biomolecule formulations obtained are the same or practically the same (within the tolerance possible) if the same starting materials and the same process conditions are used so that it can be concluded that the process is a trustworthy method.
(195) Carrying Out the First Run
(196) According to example 13 an embodiment of the 4-step UF/DF process according to the present invention was applied to concentrate a protein and replace initial acetate buffer ions with chloride. The same procedure as already described in example 6 was performed but the detailed conditions were selected to be as follows:
(197) UF1: 10 mg ml.sup.−1 Prot1/≈150 mM Acetate/≈170 mM NaCl/water/pH 5.9;
(198) DF1: 4 cycles with 500 mM NaCl/water/pH 6;
(199) DF2: 6 cycles with water/0.002 wt % NaCl.
(200) In the last step (d) the product obtained was as follows: UF2-1 (Product Pool): 198 mg ml.sup.−1 Prot1/21 mM Chloride/water/pH 5.7.
(201) It was found that the amount of acetate after UF2 was removed and being close to the LOQ of the assay.
(202) Carrying Out the Second Run
(203) The above 4-step UF/DF process was repeated with the same starting materials and the same conditions as before. In the last step (d) the product obtained was as follows:
(204) UF2-2 (Product Pool): 195 mg ml.sup.−1 Prot1/21 mM Chloride/water/pH 5.7.
(205) It was found that the amount of acetate after UF2 was removed and being close to the LOQ of the assay.
(206) Carrying Out the Third Run
(207) The above 4-step UF/DF process was again repeated with the same starting materials and the same conditions as before. In the last step (d) the product obtained was as follows:
(208) UF2-3 (Product Pool): 202 mg ml.sup.−1 Prot1/20 mM Chloride/water/pH 5.7.
(209) It was found that the amount of acetate after UF2 was removed and being close to the LOQ of the assay.
(210) As a result, all 3 runs lead to the same or nearly the same results (within an acceptable tolerance) so that the process according to the present invention has been demonstrated to be a reliable process which provides consistent results.
(211) The invention comprises aspects which are disclosed in the sentences below:
Sentences
(212) 1. A process for the preparation of a highly concentrated liquid formulation containing biomolecules comprising the steps of (a) a first ultrafiltration UF1; (b) a first diafiltration DF1; (c) a second diafiltration DF2; and (d) a second ultrafiltration UF2; whereby an aqueous solution of one or more salts as liquid medium B is used for step (b) and water or an aqueous solution of one or more salts as liquid medium C is used for step (c), whereby the salts used for step (b) are the same or different from the salts used for step (c), the liquid medium B has an ionic strength which is higher than the ionic strength of the liquid medium C. 2. The process according to sentence 1, characterized in that the liquid medium B has a high ionic strength indicated in form of a concentration which is in the range of from about 20 mM up to the limit of solubility of the salt, particularly preferred from about 100 mM to 1000 mM, more preferred about 150 mM to 750 mM, most preferred from about 200 mM to 500 mM and preferably the liquid medium C has a low ionic strength indicated in form of a concentration which is in the range of from about 0 mM to 150 mM, particularly preferred from about 0 mM to 100, more preferred about 0 mM to 75 mM, most preferred from about 0 mM to 50 mM. 3. The process according to sentence 1 or 2, characterized in that the liquid medium B has an ionic strength which is higher than the ionic strength of the liquid medium C so that the difference between the ionic strength of the liquid medium B and the ionic strength of the liquid medium C indicated in form of a concentration is at least about 100 mM, more preferred at least about 200 mM, most preferred at least about 500 mM. 4. The process according to any of the preceding sentences 1 to 3, characterized in that the liquid biomolecule formulation used in step (a) contains a liquid medium A which is an aqueous solution and contains one or more excipients, the liquid medium A is exchanged with liquid medium C by means of liquid medium B in steps (b) and (c), whereby the liquid biomolecule formulation obtained in step (c) and (d) has a reduced content of said excipient(s). 5. The process according to sentence 4, characterized in that the excipients are selected from a group consisting of excipients charged or neutral in aqueous solution; preferably the excipients being selected from the group consisting of additives used in the preparation or processing of biomolecules; unwanted substances or compounds such as impurities contained in the starting liquid biomolecule formulation; undesired side-products formed during the manufacturing process of the biomolecule; decomposition or degradation products of starting, intermediate or end products formed during the production of the biomolecule; particularly preferred cell components or debris, degradation products of bacteria such as endotoxines, DNA, RNA, undesired lipids, HCP (Host cell proteins), lipopolysaccharides (LPS) or parts thereof; sugars; detergents such as positively charged, negatively charged and also non-ionic species; any kind of negatively or positively charged ions, preferably resulting from salts. 6. The process according to any of the preceding sentences 1 to 5, characterized in that the salts are selected from organic salts and/or inorganic salts. 7. The process according to any of the preceding sentences 1 to 6, characterized in that the inorganic salt is selected from the group consisting of alkali salts or alkaline earth salts of sulfates, nitrates, phosphates, carbonates, halogenides, borates, silkates and the like or the inorganic salt is selected from the group of pharmaceutically acceptable inorganic salts, preferably sodium salts such as sodium halides, particularly preferred sodium chloride, sodium sulfate, sodium borate; calcium salts such as calcium halides, particularly preferred calcium chloride, calcium sulfate, calcium borate; magnesium salts such as magnesium halides, particularly preferred magnesium chloride, magnesium sulfate, magnesium borate, and combinations thereof, most preferred the inorganic salt is sodium chloride. 8. The process according to any of the preceding sentences 1 to 7, characterized in that liquid medium B comprises sodium chloride in a concentration from about 150 to about 900 mM, increasingly preferred from about 200 to about 700 mM, from about 400 to about 600 mM, and from about 450 to about 550 mM. 9. The process according to any of the preceding sentences 1 to 7, characterized in that the salt is an organic and/or inorganic buffer salt. 10. The process according to any of the preceding sentences 1 to 9, characterized in that the buffer salt is the basis of a buffer, preferably biological buffer, selected from the group consisting of N-(2-acetamido)-aminoethanesulfonic acid (ACES) and salts thereof, acetic acid and salts thereof, aconitic acid and salts thereof, adipic acid and salts thereof, ascorbic acid and salts thereof, N-(2-Acetamido)-iminodiacetic acid (ADA) and salts thereof, ammonia and salts thereof, ammonium chloride, 2-amino-2-methyl-1-propanol (AMP), 2-amino-2-methyl-1,3-propanediol, ammediol (AMPD), N-(1,1-Dimethyl-2-hydroxyethyl)-3-amino-2-hydroxypropanesulfonic acid (AMPSO) and salts thereof, N,N-bis-(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES) and salts thereof, benzoic acid and salts thereof, bicarbonates such as sodium hydrogen carbonate, N,N′-bis(2-hydroxyethyl)-glycine (bicine), Tris buffers such as tris(hydroxymethyl)-aminomethane, [bis-(2-hydroxyethyl)-imino]-tris-(hydroxymethylmethane) (Bis-Tris), 1,3-bis[tris(hydroxymethyl)-methylamino]propane (Bis-Tris-Propane), boric acid and salts thereof, dimethylarsinic acid (Cacodylate) and salts thereof, 3-(cyclohexylamino)-propanesulfonic acid (CAPS) and salts thereof, 3-(cyclohexylamino)-2-hydroxy-1-propanesulfonic acid (CAPSO) and salts thereof, carbonic acid and salts thereof, carbonates such as sodium carbonate, cyclohexylaminoethanesulfonic acid (CHES) and salts thereof, citric acid and salts thereof, 3-[N-bis(hydroxyethyl)amino]-2-hydroxypropanesulfonic acid (DIPSO) and salts thereof, formic acid and salts thereof, gluconic acid and salts thereof, glyceric acid and salts thereof, glutamic acid and salts thereof, glycines such as glycylglycine, N-(2-hydroxyethyl)-piperazine-N′-ethanesulfonic acid (HEPES) and salts thereof, N-(2-hydroxyethyl)-piperazine-N′-3-propanesulfonic acid (HEPPS, EPPS) and salts thereof, N-(2-hydroxyethyl)-piperazine-N′-2-hydroxypropanesulfonic acid (HEPPSO) and salts thereof, imidazoles, lactic acid and salts thereof, malic acid and salt thereof, maleic acid and salts thereof, 2-(N-morpholino)-ethanesulfonic acid (MES) and salts thereof, 3-(N-morpholino)-propanesulfonic acid (MOPS) and salts thereof, 3-(N-morpholino)-2-hydroxypropanesulfonic acid (MOPSO) and salts thereof, phosphoric acid and salts thereof, piperazine-N,N′-bis(2-ethanesulfonic acid) (PIPES) and salts thereof, piperazine-N,N′-bis(2-hydroxypropanesulfonic acid) (POPSO) and salts thereof, pyridines, succinic acid and salts thereof, 3-{[tris(hydroxymethyl)-methyl]-amino}-propanesulfonic acid (TAPS) and salts thereof, 3-[N-tris(hydroxymethyl)-methylamino]-2-hydroxypropanesulfonic acid (TAPSO) and salts thereof, tartaric acid and salts thereof, taurine (2-aminoethanesulfonic acid, AES and salts thereof), triethanolamine (TEA), 2-[tris(hydroxymethyl)-methylamino]-ethanesulfonic acid (TES) and salts thereof, and N-[tris(hydroxymethyl)-methyl]-glycine (tricine); or the biological buffer is an amino acid in an aqueous solution, the amino acid being selected from the group consisting of alanine, arginine, asparagine, aspartic acid, cysteine, glutamic acid, glutamine, glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, and valine; particularly preferred biological buffers are selected from the group consisting of phosphoric acid and salts thereof, citric acid and salts thereof, tris, succinic acid and salts thereof, malic acid and salts thereof, tartaric and salts thereof, acetic acid and salts thereof, lactic acid and salts thereof, aconitic acid and salts thereof, ascorbic acid and salts thereof, glutamic acid and salts thereof, ammoniumchloride, triethanolamine, alanine, arginine, glutamine, glycine, histidine, lysine, and proline. 11. The process according to any of the preceding sentences 1 to 10, characterized in that the liquid medium C consists or essentially consist of water. 12. The process according to any of the preceding sentences 1 to 11, characterized in that the biomolecule and the excipient(s) to be removed from the liquid biomolecule formulation have opposite charges, preferably the biomolecule is positively charged and the excipient(s) to be removed by the process are negatively charged excipient(s), most preferably the biomolecule is a positively charged protein and the negatively charged excipient(s) are anions. 13. The process according to any of the preceding sentences 1 to 12, characterized in that the process step (b) may be repeated several times prior to perform the subsequent step (c), preferably the exchange of liquid medium B may be performed with x medium cycles, whereby x=2 to 10, more preferably x=2 to 8, most preferably x=2 to 6. 14. The process according to any of the preceding sentences 1 to 13, characterized in that the process step (c) may be repeated several times prior to perform the subsequent step (d), preferably the exchange of liquid medium C may be performed with y medium cycles, whereby y=2 to 10, more preferably y=2 to 8, most preferably y=2 to 6. 15. The process according to any of the preceding sentences 1 to 14, characterized in that the ultrafiltration UF1 of step (a) is used to concentrate the liquid biomolecule formulation, preferably up to about 10%-70%, more preferably about 15%-60%, most preferably about 25%-50% compared with the initial concentration of the liquid biomolecule formulation. 16. The process according to any of the preceding sentences 1 to 15, characterized in that the ultrafiltration UF2 of step (d) is used to concentrate the liquid biomolecule formulation to the desired value. 17. The process according to any of the preceding sentences 1 to 16, characterized in that step (b) and step (c) follow directly one after the other whereby no intermediate process step is performed in between, preferably also step (a) and step (b) follow directly one after the other whereby no intermediate process step is performed in between, and preferably also step (c) and step (d) directly follow one after the other whereby no intermediate process step is performed in between. 18. The process according to any of the preceding sentences 1 to 17, characterized in that the biomolecules are selected from the group consisting of small molecules, preferably lipds such as phospholipids, glycolipids, sterols; vitamins; hormones; neurotransmitter; Monomers, preferably amino acids, nucleotides, monosaccharides; biopolymers, preferably proteins or peptides; nucleic acids such as DNA, RNA; oligosaccharides, polysaccharides such as glycogen, starch, chitin, cellulose, fructane, dextrane; particularly preferred are proteins or peptides, nucleic acids, oligosaccharides, and polysaccharides; most preferred are proteins or peptides. 19. The process according to any of the preceding sentences 1 to 18, characterized in that the process steps (a) to (d) are performed at room temperature (20-25° C.). 20. The process according to any of the preceding sentences 1 to 19, characterized in that the process steps (a) to (d) are performed using a tangential flow filtration (TFF) system or a centrifugal filtration system. 21. Highly concentrated liquid formulation containing biomolecules prepared by a process according to any of sentences 1 to 20.