BUTANOL EXPRESSION CASSETTE, RECOMBINANT PLASMID AND BUTANOL PRODUCTION RELATED GENE EXPRESSION METHOD
20180179556 · 2018-06-28
Assignee
- National Tsing Hua University (Hsinchu City, TW)
- Chang Chun Plastics Co., Ltd. (Taipei, TW)
- Chang Chun Petrochemical Co., Ltd. (Taipei, TW)
Inventors
Cpc classification
C12Y203/01009
CHEMISTRY; METALLURGY
C12N9/1217
CHEMISTRY; METALLURGY
Y02E50/10
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
C12Y101/0103
CHEMISTRY; METALLURGY
C12N9/0008
CHEMISTRY; METALLURGY
C12N9/1029
CHEMISTRY; METALLURGY
C12N15/70
CHEMISTRY; METALLURGY
C12Y101/01322
CHEMISTRY; METALLURGY
C12Y103/05004
CHEMISTRY; METALLURGY
C12Y102/01004
CHEMISTRY; METALLURGY
International classification
C12N15/70
CHEMISTRY; METALLURGY
Abstract
A butanol expression cassette includes a butanol production related genes and a fermentation regulatory element. The fermentation regulatory element controls the expression of the butanol production related gene and locates upstream of the butanol production related gene. The fermentation regulatory element includes a promoter, a ribosome binding site and a transcription factor binding site of a fermentation gene. A fermentation in which the fermentation regulatory element involves includes an acetic acid fermentation, an alcohol fermentation, a succinic acid fermentation or a lactic acid fermentation, the butanol production related gene is not the fermentation gene or a gene of an upstream product of the fermentation in which the fermentation gene involves. The present invention provides a recombinant plasmid formed by cloning the butanol expression cassettes in the expression vector. The present invention also provides a butanol production related gene expression method to express butanol production related gene by using recombinant plasmid.
Claims
1. A butanol expression cassette, comprising: a butanol production related gene; and a fermentation regulatory element, configured to control an expression of the butanol production related gene and located upstream of the butanol production related gene, wherein the fermentation regulatory element comprises a promoter, a ribosome binding site and a transcription factor binding site of a fermentation gene, wherein a fermentation in which the fermentation regulatory element involves comprises an acetic acid fermentation, an alcohol fermentation, a succinic acid fermentation or a lactic acid fermentation, and the butanol production related gene is not the fermentation gene or a gene of an upstream product of the fermentation in which the fermentation gene involves.
2. The butanol expression cassette according to claim 1, wherein the fermentation gene comprises an ackA gene, an adhE gene, an frdA gene or an ldhA gene.
3. The butanol expression cassette according to claim 2, wherein when the fermentation gene is the ackA gene, the fermentation regulatory element has a sequence of SEQ ID NO: 1.
4. The butanol expression cassette according to claim 2, wherein when the fermentation gene is the adhE gene, the fermentation regulatory element has a sequence of SEQ ID NO:2.
5. The butanol expression cassette according to claim 2, wherein when the fermentation gene is the frdA gene, the fermentation regulatory element has a sequence of SEQ ID NO:3.
6. The butanol expression cassette according to claim 2, wherein when the fermentation gene is the ldhA gene, the fermentation regulatory element has a sequence of SEQ ID NO:4.
7. The butanol expression cassette according to claim 1, wherein the butanol production related gene comprises an atoB gene, an adhE2 gene, a crt gene, an hbd gene, a ter gene or an fdh gene.
8. A recombinant plasmid configured to express a butanol production related gene, comprising: an expression vector; and the butanol expression cassette according to any one of claim 1, cloned in the expression vector.
9. The recombinant plasmid according to claim 8, wherein the expression vector comprises an expression vector containing a ColE1 replication origin, an expression vector containing a Cola replication origin or an expression vector containing a pSC101 replication origin.
10. A butanol production related gene expression method, comprising: transforming the recombinant plasmid according to claim 8 in a host cell, wherein the fermentation gene and the gene of the upstream product of the fermentation in which the fermentation gene involves have been eliminated from the host cell; culturing the host cell under a fermentation condition; and inducing the recombinant plasmid to express the butanol production related gene.
11. The method according to claim 10, wherein a method of inducing the recombinant plasmid is cultured in an anaerobic environment.
12. The method according to claim 10, wherein a step of culturing the host cell comprises: under an aerobic environment, culturing the host cell to an early phase of a growth log phase or a late phase of the growth log phase; and transferring to an anaerobic environment for continuous culturing.
13. The method according to claim 12, wherein in the anaerobic environment, a pH value is adjusted to 6.8 to 7.2 every 8 to 24 hours, and a glucose concentration is adjusted to 20 g/L or more.
14. The method according to claim 10, wherein the host cell comprises an Escherichia coli.
15. The method according to claim 10, wherein a gene eliminated from the host cell comprises a pta gene, an adhE gene, an frdBC gene, an ldhA gene or a combination thereof.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0027] The accompanying drawings are included to provide a further understanding of the invention, and are incorporated in and constitute a part of this specification. The drawings illustrate embodiments of the invention and, together with the description, serve to explain the principles of the invention.
[0028]
[0029]
[0030]
[0031]
[0032]
[0033]
[0034]
[0035]
[0036]
DESCRIPTION OF THE EMBODIMENTS
[0037] In the following, the embodiments of the invention are described. However, the embodiments are illustrative only, and the disclosure of the invention is not limited thereto.
[0038] In an embodiment of the invention, a butanol expression cassette is provided, including a butanol production related gene and a fermentation regulatory element. The fermentation regulatory element is configured to control the expression of the butanol production related gene and locates upstream of the butanol production related gene. The fermentation regulatory elements (FRE) is the fermentation regulatory element of the gene involved in the fermentation (referred to as the fermentation gene), which includes a promoter, a ribosome binding site and a transcription factor binding site, as shown in
[0039] In an embodiment, the fermentation gene is the gene involved in the oxidation of NADH into NAD or the production of ATP. Specifically, the fermentation in which the fermentation gene involves includes an acetic acid fermentation, an alcohol fermentation, a succinic acid fermentation or a lactic acid fermentation.
[0040]
[0041] Then, please refer to
[0042] Among the above, the butanol production related gene is not the fermentation gene or the gene of the upstream product of the fermentation in which the fermentation gene involves. In an embodiment, the butanol production related gene includes the gene of the product which is produced accompanied with the oxidation of NADH into NAD.sup.+. That is, the fermentation gene and the butanol production related gene have consistent characteristics, in other words, both of them involve in the reaction which require NADH. Specifically, the butanol production related gene includes an atoB gene, an adhE2 gene, a crt gene, an hbd gene, a ter gene or an fdh gene.
[0043] In an embodiment of the invention, through cloning the butanol expression cassette in the expression vector, the recombinant plasmid configured to express the butanol production related gene is constructed.
[0044] In an embodiment, the expression vector includes, for example, an expression vector containing a ColE1 replication origin, an expression vector containing a Cola replication origin or an expression vector containing a pSC101 replication origin.
[0045] In an embodiment of the invention, the butanol production related gene expression method includes the following steps. First, the recombinant plasmid is transformed in a host cell, wherein the fermentation gene and the gene of the upstream product of the fermentation in which the fermentation gene involves have already been eliminated from the host cell. Then, the host cell is cultured under a fermentation condition, and the recombinant plasmid is induced to express the butanol production related gene.
[0046] In an embodiment, in the host cell, the gene of the reaction involving in the oxidation of NADH into NAD.sup.+ or the reaction involving in the production of ATP has already been eliminated. In an embodiment, the eliminated gene is the fermentation gene or the gene of the upstream product of the fermentation in which the fermentation gene involves. Gene of the upstream product means that although not being the fermentation gene, it is the gene of the product in the fermentation route in which the fermentation gene involves. In an embodiment, the eliminated gene includes, for example, a pta gene, an adhE gene, an frdBC gene, or an ldhA gene.
[0047] In an embodiment of the invention, the step of culturing the host cell includes culturing the host cell to an early phase of a growth log phase or a late phase of the growth log phase under an aerobic environment, and transferring to an anaerobic environment for continuous culturing. Among the above, the recombinant plasmid is induced to express the butanol production related gene under an anaerobic environment, and no other addition of the inducer is needed.
[0048] Then, experiments are used to illustrate the construction of the recombinant plasmid and the butanol production related gene expression method using the recombinant plasmid, so as to describe the butanol production related gene expression platform constructed by the invention.
[0049] [Construction of the Recombinant Plasmid]
[0050]
[0051] Then, please refer to
[0052] Furthermore, please refer to
[0053] In addition, please refer to
[0054] In the recombinant plasmids pRW13pRW24, the fermentation regulatory elements all locates upstream of the butanol production related gene, in such a way, the fermentation regulatory elements can control the expression of the butanol production related gene.
TABLE-US-00001 TABLE 1 recombinant plasmid gene type pRW13 FRE.sub.ackA :: atoB-adhE2-crt-hbd; ColE1 replication origin pRW14 FRE.sub.adhE :: atoB-adhE2-crt-hbd; ColE1 replication origin pRW15 FRE.sub.frd :: atoB-adhE2-crt-hbd; ColE1 replication origin pRW16 FRE.sub.ldhA :: atoB-adhE2-crt-hbd; ColE1 replication origin pRW17 FRE.sub.ackA :: fdh; pSC101 replication origin pRW18 FRE.sub.adhE :: fdh; pSC101 replication origin pRW19 FRE.sub.frd :: fdh; pSC101 replication origin pRW20 FRE.sub.ldhA :: fdh; pSC101 replication origin pRW21 FRE.sub.ackA :: ter; Cola replication origin pRW22 FRE.sub.adhE :: ter; Cola replication origin pRW23 FRE.sub.frd :: ter; Cola replication origin pRW24 FRE.sub.ldhA :: ter; Cola replication origin
[0055] [The Better Recombinant Plasmid Combination is Chosen to Produce Butanol]
[0056] To express the atoB gene, the adhE2 gene, the crt gene, the hbd gene, the ter gene and the fdh gene simultaneously, one recombinant plasmid is chosen from 4 recombinant plasmids pRW13pRW16 containing the ColE1 replication origin, so as to express the atoB-adhE2-crt-hbd gene; one recombinant plasmid is chosen from 4 recombinant plasmids pRW17pRW20 containing the pSC101 replication origin, so as to express the fdh gene; and one recombinant plasmid is chosen from 4 recombinant plasmids pRW21pRW24 containing the Cola replication origin, so as to express the ter gene. Therefore, there are 444=64 kinds of different recombinant plasmid combinations for the expression of butanol production related gene, so as to produce butanol.
[0057] Then, the host cell is provided, which is an Escherichia coli mutant in which the pta gene, adhE gene, frdBC gene and IdhA gene have already been eliminated. Then, one combination is chosen from the above-mentioned 64 kinds of recombinant plasmid combinations, and transformed to the Escherichia coli mutant.
[0058] Afterwards, the transformed Escherichia coli mutant is cultured under a fermentation condition. Specifically, the transformed Escherichia coli mutant is cultured to the stationary growth phase (that is, OD.sub.600 is about 4) under the aerobic environment first, then transferred to the anaerobic environment for continuous culturing, and after 24 hours of the anaerobic environment culturing, the cell growth density and production amount of butanol are measured, and the result is shown in
[0059] It can be known from
[0060] Then, the Escherichia coli mutant with the above-mentioned recombinant plasmid combination (FRE.sub.ackA::atoB-adhE2-crt-hbd+FRE.sub.adhE::fdh+FRE.sub.adhE::ter) transformed therein is cultured under following condition respectively, so as to find out the best production condition of butanol.
[0061] [Effect of the Oxygen Supply Condition and Culture Vessel on the Production Amount of Butanol]
Experimental Example 1
[0062] Under the aerobic environment, the above-mentioned recombinant Escherichia coli mutant is cultured to the growth log phase in the TB (Terrific Broth) culture medium containing antibiotics, then transferred to flask for continuous culturing under the aerobic environment. After 24 hours of culturing, the cell growth density and production amount of butanol are measured.
Experimental Example 2
[0063] The method similar to the experimental example 1 is used to culture the recombinant Escherichia coli mutant, and the difference lies in that the tube is used to replace the flask as a culture vessel, and the micro-aerobic environment is used to replace the aerobic environment as a condition for continuous culturing.
Experimental Example 3
[0064] The method similar to the experimental example 1 is used to culture the recombinant Escherichia coli mutant, and the difference lies in that the micro-aerobic environment is used to replace the aerobic environment as a condition for continuous culturing.
Experimental Example 4
[0065] The method similar to the experimental example 2 is used to culture the recombinant Escherichia coli mutant, and the difference lies in that the anaerobic environment is used to replace the aerobic environment as a condition for continuous culturing.
[0066]
[0067] [Effect of the Culture Medium on the Production Amount of Butanol]
Experimental Example 5
[0068] Under the aerobic environment, the recombinant Escherichia coli mutant is cultured to the medium phase of the growth log phase in the TB culture medium containing antibiotics, then transferred to tube for continuous culturing under the anaerobic environment. After 24 hours of culturing, the cell growth density and production amount of butanol are measured.
Experimental Example 6
[0069] The method similar to the experimental example 5 is used to culture the recombinant Escherichia coli mutant, and the difference lies in that the M9 culture medium containing 0.5% yeast extract is used to replace the TB culture medium. Among the above, compared to the rich nutrients required for the cell growth provided by the yeast extract, the M9 culture medium only contain the minimum nutrients required for the cell growth.
Experimental Example 7
[0070] The method similar to the experimental example 5 is used to culture the recombinant Escherichia coli mutant, and the difference lies in that the M9 culture medium is used to replace the TB culture medium.
[0071]
[0072] [Effect of the Timing of Transferring to the Anaerobic Environment on the Production of Butanol]
Experimental Example 8
[0073] Under the aerobic environment, the recombinant escherichia coli mutant is cultured to growth retardation phase (OD.sub.600 is about 0.03) in the TB culture medium containing antibiotics, and transferred to the tube for continuous culturing under the anaerobic environment, the pH value is adjusted to 6.8 to 7.2 every 8 to 24 hours, and the glucose concentration is adjusted to 20 g/L or more. After 72 hours of culturing, the cell growth density and production amount of butanol are measured.
Experimental Example 9
[0074] The method similar to the experimental example 8 is used to culture the recombinant Escherichia coli mutant, the difference lies only in the timing of transferring to the anaerobic environment, and the growth log phase (that is, OD.sub.600 is about 0.4) is used to replace the growth retardation phase (that is, OD.sub.600 is about 0.03).
Experimental Example 10
[0075] The method similar to the experimental example 8 is used to culture the recombinant Escherichia coli mutant, the difference lies only in the timing of transferring to the anaerobic environment, and the early phase of the growth stationary phase (that is, OD.sub.600 is about 2) is used to replace the growth retardation phase (that is, OD.sub.600 is about 0.03).
Experimental Example 11
[0076] The method similar to the experimental example 8 is used to culture the recombinant Escherichia coli mutant, the difference lies only in the timing of transferring to the anaerobic environment, and the late phase of the growth stationary phase (that is, OD.sub.600 is about 9) is used to replace the growth retardation phase (that is, OD.sub.600 is about 0.03).
Experimental Example 12
[0077] Under the anaerobic environment, the recombinant Escherichia coli mutant is cultured for 1618 hours in the TB culture medium containing antibiotics, and the cell growth density is concentrated to OD.sub.600 being about 9, then transferred to tube for continuous culturing under the anaerobic environment. Among the above, the pH value is adjusted to 6.8 to 7.2 every 8 to 24 hours, and the glucose concentration is adjusted to 20 g/L or more. After 72 hours of culturing, the cell growth density and production amount of butanol are measured.
[0078] That is, the experimental example 12 uses the method similar to the experimental example 11 for the culturing of recombinant Escherichia coli mutant, the difference lies in that before the transferring to tube for the culturing, after the cells are cultured for 1618 hours under the anaerobic environment, then the cell growth density is concentrated to OD.sub.600 being about 9 is used to replace the cells is cultured to the late phase of the growth stationary phase under the aerobic environment (OD.sub.600 is about 9).
[0079]
[0080] Please refer to
[0081] [Effect of Antibiotics on the Production of Butanol]
Experimental Example 13
[0082] Under the aerobic environment, the recombinant Escherichia coli mutant is cultured to the growth log phase (OD.sub.600 is about 0.4) in the TB culture medium containing antibiotics, and then transferred to tube for continuous culturing under the anaerobic environment, wherein the TB culture medium in use contains no antibiotics. The cell growth density and the production amount of butanol are measured every 12 hours of culturing, and the pH value is adjusted to 6.8 to 7.2 and the glucose concentration is adjusted to 20 g/L or more.
Experimental Example 14
[0083] Under the anaerobic environment, the recombinant Escherichia coli mutant is cultured for 1618 hours in the TB culture medium including no antibiotics, and then the cell growth density is concentrated to OD.sub.600 being about 9. After that, the cells are transferred to tube for continuous culturing under the anaerobic environment, wherein the culture medium also includes no antibiotics. The cell growth density and the production amount of butanol are measured every 24 hours of culturing, and the pH value is adjusted to 6.8 to 7.2 and the glucose concentration is adjusted to 20 g/L or more.
[0084]
[0085] Please refer to
[0086] In other words, under the anaerobic environment, when the TB culture medium including no antibiotics is used for the culturing of the recombinant Escherichia coli mutant, the recombinant plasmid won't be excluded by the recombinant Escherichia coli mutant, instead, it still exists in the recombinant Escherichia coli mutant, so as to express the gene consistently and produce butanol.
[0087] Based on the above, the butanol expression cassette provided by the invention includes a fermentation regulatory element and a butanol production related gene, wherein the fermentation regulatory element can, for example, induce the expression of the butanol production related gene under the anaerobic environment or micro-aerobic environment. That is, through the controlling of the fermentation regulatory element by the host cell itself, no addition of the inducer is needed for the expression of the butanol production related gene. In addition, in order to grow under the anaerobic environment, the host cell must keep the recombinant plasmid containing the fermentation regulatory element therein. With such property, in the invention, the host cell is prevented from excluding the recombinant plasmid without the addition of antibiotics or inducers, so that the host cell can continuously express the butanol production related gene. In other words, with the use of the recombinant plasmid constructed by the butanol expression cassette containing the fermentation regulatory element of the invention, the butanol production related gene can be expressed under the condition without the addition of inducer or antibiotics additionally, therefore, a production platform able to achieve self-regulation is provided. In such a way, the product quality can be significantly increased or the production cost can be reduced with the application of the production platform.
[0088] It will be apparent to those skilled in the art that various modifications and variations can be made to the disclosed embodiments without departing from the scope or spirit of the invention. In view of the foregoing, it is intended that the invention covers modifications and variations provided that they fall within the scope of the following claims and their equivalents.