ANTI-TUMOR MEDICAMENT BASED ON ADENOVIRUS
20180163190 ยท 2018-06-14
Inventors
- Rita Gerardy-Schahn (Hiddenhausen, DE)
- Florian Kuehnel (Hannover, DE)
- Nikolas Martin (Springe, DE)
- David Schwarzer (Hannover, DE)
Cpc classification
C12N2710/10322
CHEMISTRY; METALLURGY
C07K2319/33
CHEMISTRY; METALLURGY
C12N2710/10332
CHEMISTRY; METALLURGY
C12N2795/00043
CHEMISTRY; METALLURGY
C12N2795/00022
CHEMISTRY; METALLURGY
C07K2319/035
CHEMISTRY; METALLURGY
C12N9/2402
CHEMISTRY; METALLURGY
C12N15/86
CHEMISTRY; METALLURGY
C12N2710/10043
CHEMISTRY; METALLURGY
International classification
C12N15/86
CHEMISTRY; METALLURGY
Abstract
The invention provides manipulated adenovirus, i.e. a viral particle based on a manipulated adenovirus, for use as a medicament, especially for use in the treatment of tumours. The viral particle of the invention has the advantage of having a preference or specificity for tumour cells, yielding a preferred infection of tumour cells. The viral particle is based on adenovirus, especially type C, preferably serotype 2 (Ad2), more preferably serotype 5 (Ad5), in which the native entire fiber protein, and its coding sequence, respectively, is deleted and replaced by a fusion protein providing specificity for cell surface bound polysialic acid.
Claims
1. Adenoviral particle for use in the treatment of a tumour comprising a fusion protein comprising from N-terminus to C-terminus a tail domain of an adenoviral fiber protein and an amino acid sequence of an endosialidase of bacteriophage origin, lacking its bacteriophage attachment domain, wherein the fusion protein specifically binds to polysialic acid.
2. Adenoviral particle according to claim 1, wherein the endosialidase of bacteriophage origin, lacking its bacteriophage attachment domain is selected from amino acid sequences having an identity of at least 51% to one of SEQ ID NO: 5 (EndoK1E), SEQ ID NO: 6 (EndoK1F), SEQ ID NO: 7 (EndoNK1), and SEQ ID NO: 8 (Endo92).
3. Adenoviral particle according to claim 1, wherein at least 1 pseudo-repeat of SEQ ID NO: 14 is arranged between the tail domain and the endosialidase.
4. Adenoviral particle according to claim 1, wherein the tail domain an amino acid sequence of amino acids 1 to 44 of SEQ ID NO: 4.
5. Adenoviral particle according to claim 4, wherein a flexible linker peptide containing at least 2 repeats of one or more amino acid sequences selected from (PT).sub.XP, wherein X is 1 to 10, and S.sub.3N.sub.10 (SEQ ID NO: 17) is arranged N-terminally to the endosialidase and C-terminally to the at least one pseudo-repeat.
6. Adenoviral particle according to claim 1, wherein the fusion protein from N-terminus to C-terminus consists of the tail domain, at least one pseudo-repeat, a linker peptide, and one endosialidase of bacteriophage origin, lacking its bacteriophage attachment domain.
7. Adenoviral particle according to claim 2, wherein SEQ ID NO: 5 (Endo-K1E) contains the mutation K200A (SEQ ID NO: 41) and/or the mutation R386A and/or R437A (SEQ ID NO: 42), SEQ ID NO: 6 (Endo-K1F) contains the mutation K410A (SEQ NO: 9) and/or the mutation R596A and/or R647A (SEQ ID NO: 10), SEQ ID NO: 7 (Endo-NK1) contains the mutation R503A and/or R554A (SEQ ID NO: 43), and SEQ ID NO: 8 (Endo92) contains the mutation R436A and/or R437A (SEQ ID NO: 44).
8. Adenoviral particle according to claim 1, comprising wild-type adenoviral proteins with the exception of the fiber protein encoded by nucleotides No. 31037 to 32782 in the sequence accessible at GenBank at accession No. AY339865.1.
9. Adenoviral particle according to claim 8 containing the wild-type adenoviral proteins of adenovirus C serotype 5 and lacks the coding sequence for E3 protein.
10. Adenoviral particle according to claim 1, wherein the tumour is selected from glioblastoma, medulloblastoma, rhabdomyosarcoma, small cell carcinoma, and small cell lung carcinoma.
11. Adenoviral particle according to claim 1, containing DNA encoding the amino acid sequences.
12. Adenoviral particle according to claim 11, wherein the coding sequence for adenoviral early proteins, optionally additionally the coding sequence for E1A, is functionally arranged under the control of a polysialyltransferase promoter of mammalian origin or a telomerase promoter.
13. Adenoviral particle according to claim 1 wherein the fusion protein has a sequence of at least 90% identity to one of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, and SEQ ID NO: 4.
14. Adenoviral particle according to claim 1, wherein the endosialidase has a reduced enzymatic activity on polysialic acid.
15. Process for producing an adenoviral particle according to claim 1 by expressing a DNA in a mammalian cell, the DNA encoding a fusion protein comprising from N-terminus to C-terminus a tail domain of amino acids No. 1 to 44 of SEQ ID NO: 4 and an amino acid sequence of an endosialidase of bacteriophage origin, lacking its bacteriophage attachment domain.
16. Process according to claim 15, wherein the adenoviral particle is a fusion protein comprising from N-terminus to C-terminus a tail domain of an adenoviral fiber protein and an amino acid sequence of an endosialidase of bacteriophage lacking its bacteriophage attachment domain, wherein the fusion protein specifically binds to polysialic acid.
Description
[0051] The invention will now be described in greater detail by way of examples with reference to the figures, which show in
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[0071] The designations of these exemplary embodiments indicate the deletions that were made, counting from the C-terminus of the wild-type fiber protein. Optionally all embodiments (C235, C307, C414 and C521) contained the mutation K410A which resulted in a reduced endosialidase activity and did essentially not affect binding to cell surface bound polysialic acid. All of the aforementioned embodiments can optionally contain the double mutation R596A/R647A, abolishing the endosialidase activity but not affecting the binding to polysialic acid. Generally, a deletion can be indicated by a , D, d, or delta, with the letter N indicating a deletion from the N-terminus, the letter C indicating a deletion from the C-terminus.
[0072] The N-terminal section of 247 amino acids of the wild-type form is not contained in the polySia-binder in order to delete the wild-type bacteriophage attachment domain.
[0073] In the examples, in all viral genomes of the invention and in the wild-type adenovirus used, the coding sequence for E3 protein was deleted.
[0074] Exemplary DNA sequences in the form of a bacterial plasmid for cloning a viral particle containing the polySia-binder of the invention are shown in SEQ ID NO: 45, SEQ ID NO: 49 and SEQ ID NO: 51. Therein, the endosialidase is represented by EndoK1F (endoNF), and the expression cassette is under the control of the endosialidase promoter (SEQ ID NO: 45 and 49) or a telomerase promoter (SEQ ID NO: 51), respectively. In SEQ ID NO: 45, nucleotides 28582 to 32136 encode the polySia binder, SEQ ID NO: 48 shows the amino acid sequence of the polySia binder. The N-terminally truncated E3 14.7K encoded by SEQ ID NO: 45 is given as SEQ ID NO: 47, SEQ ID NO: 46 shows the amino acid sequence of the C-terminally truncated E3 14.5K encoded by SEQ ID NO: 45. In SEQ ID NO: 49, nucleotides 29611 to 33165 encode the polySia binder, its amino acid sequence is given as SEQ ID NO: 50. In SEQ ID NO: 51, nucleotides 28447 to 32001 encode the polySia binder, its amino acid sequence is given as SEQ ID NO: 52.
[0075] Exemplary complete virus genomes containing a coding sequence for the polySia binder of the invention are given as hTert-Ad-C235fiber-(PT8)P-N247EndoNF-K410A (SEQ ID NO: 53), wherein nucleotides 28447 to 32001 encode the polySia binder, its amino acid sequence is given as SEQ ID NO: 57. SEQ ID NO: 54 to SEQ ID NO: 56 and SEQ ID NO: 58 give the further amino acid sequences of the codons indicated in SEQ ID NO: 53. A complete virus genome containing a coding sequence for the polySia binder termed hTert-Ad-C307fiber-(PT8)P-N247EndoNF-K410A is shown at SEQ ID NO: 59 (hTERT-Ad5_fiberEndo), encoding the polySia binder at nucleotides 28447 to 31782 (Fiber-Endo), the amino acid sequence of which is given as SEQ ID NO: 63. SEQ ID NO: 60 to 62 give the amino acid sequences of the codons indicated in SEQ ID NO: 59 A complete virus genome termed hTert-Ad-C414fiber-(PT8)P-N247EndoNF-K410A is given at SEQ ID NO: 64, encoding the polySia binder at nucleotides 28447 to 31464 (C414fiber-(PT8)P-N247EndoNF-K410A), the amino acid sequence is given at SEQ ID NO: 68. SEQ ID NO: 65 to 67 give further amino acid sequences of the codons indicated in SEQ ID NO: 64. These viral genomes contain DNA sections which form homologous arms for integration of the virus genome into the genome of the target cell by homologous recombination and encode the endosialidase of EndoNF as an embodiment of the endosialidase of phage origin without its phage attachment domain.
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Example 1: Cloning of DNA Encoding an Adenovirus Containing the PolySia-binder
[0077] Generally, the DNA encoding the adenoviral particles are available by replacing the coding sequence for the fiber protein from the genome encoding a wild-type adenovirus by a sequence encoding the polySia-binder.
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[0079] The coding sequence for the fusion protein was produced by PCR amplification of sections with primers having overlapping terminal sections, followed by a one-step fusion PCR (Szewczyk et al., Nature Protocols 2006, 3111-3120 and Erratum). The outermost primers of the fusion product contained homologous sections, and the fusion product was integrated into the previously prepared vector lacking the wild-type fiber encoding sequence using the Red/ET mediated recombination (available from Genebridges, USA). The primers used are indicated in
[0080] The kanamycin resistance cassette was removed using its FRT sites by FLP/FRT recombination.
[0081] The plasmid containing the entire genome for the recombinant adenovirus having the polySia-linker in the place of the wild-type fiber protein was linearized by PacI and transfected into HEK293 cells for producing the adenovirus having the polySia binder, which construct is also referred to as Ad-polySia-binder herein. Ad-polySia-binder adenoviral particles were shown to contain the DNA encoding the genome having the polySia binder, both for the genome encoding all adenoviral proteins except the wild-type fiber protein, and for the embodiment, in which genome in addition the coding sequence for E3 was deleted.
[0082] In addition, the coding sequence contained an expression cassette for enhanced green fluorescent protein (EGFP) as a reporter, the coding sequence of which was functionally arranged under the control of the E1B promoter. The CDS (codons) of EGFP was linked to the CDS of E1B via an IRES motif.
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Example 2: Producing Adenovirus Containing the PolySia-binder
[0084] For producing Ad-polySia binder viral particles, HEK293-polySia+cells were cultivated in 60 T-75 culture flasks under cell culture conditions in Gibco DMEMGlutaMAX, containing 2% v/v FCS, Penicillin (100 U/mL) and Streptomycin (100 g/mL). Cells were grown to about 90% confluency and then infected with the C307 construct with an MOI of 5. The infected cells were incubated until a strong cytopathic effect was observable and nearly all cells were detached. Cells were then collected by centrifugation and lysed by three repetitions of freezing and thawing. Subsequently, particles were concentrated by CsCl gradient centrifugation (96,000g, 4 h), yielding 5,9410.sup.10 ifu (infectious particles)/mL in a total volume of 2 mL. The proportion of infectious particles in total particles was 1.25%.
[0085] These Ad-polySia binder viral particles were used to infect cell line cultures of HEK293 cells and of HEK293 cells that were genetically manipulated to express cell-surface bound polysialic acid (HEK293-polySia+) which in the example represented tumour cells bearing polysialic acid on their cell surface. HEK293-polySia+ were generated by retroviral transduction of HEK293 cells with a DNA encoding for the murine ST8SiaIVunder the control of the CMV promoter.
[0086] The results are depicted in
[0087] The predominant infection of polysialic acid bearing cells and the very small infection of cells having CAR but no polysialic acid is shown for different amounts of viral particle containing preparations used. This result is shown in
[0088] When using wild-type adenovirus as a positive control, both HEK293 cells and HEK293-polySia+ cells, production of virus was found approximately to the same extent for each cell line, indicating no preference for one of the cell lines, i.e. no preference for the polysialic acid bearing cells.
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[0091] In contrast, HEK293-polySia+ cells when contacted with the viral particles C307 containing the K410A mutation were effectively infected. Fluorescence images of
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[0094] The results of
[0095] The predominance of infection of cells for those cells bearing cell surface bound polysialic acid, represented by HEK293-polySia+, over cells not bearing cell surface bound polysialic acid by viral particles that were produced in infected cells shows that the specificity of the viral particles for cells bearing cell surface bound polysialic acid is stable, i.e. inheritable, and allows for secondary infection of such cells by viral particles that are generated within cells that were primarily infected by viral particles.
[0096] Therefore, these results indicate that cells bearing cell surface bound polysialic acid can specifically be infected by the viral particles of the invention, e.g. essentially without infecting cells bearing CAR but no cell surface bound polysialic acid. The viral particles used for initial infection can also be termed primary viral particles. Further, the results show that the viral particles multiply within infected cells to generate secondary viral particles having the same specificity for infecting cells bearing cell surface bound polysialic acid. The stable inheritance of the specificity in secondary viral particles for cells bearing cell surface bound polysialic acid allows re-targeting of the secondary viral particles to cells bearing cell surface bound polysialic acid.
[0097] For fluorescence-activated cell sorting (FACS) analysis, HEK293 cells and HEK293-polySia+ cells after contacting with viral particles as described above were incubated in fresh culture medium for 48 h under cell culture conditions and brought into suspension by the treatment with Cell Dissociation Buffer, enzyme-free, PBS (available from Gibco, USA) according to the manufacturer's guidelines. For detection of infected cells EGFP fluorescence was measured directly. For comparison, wild-type adenovirus containing the same EGFP cassette was used, and C307 and C414, both additionally bearing the K410A mutation. HEK293 cells were used for representing cells having the CAR receptor and essentially having no cell surface bound polysialic acid, and HEK293-polySia+ cells were used for representing tumour cells bearing cell surface bound polysialic acid.
[0098] The FACS results are shown in
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Example 3: Use of Adenoviral Particles Containing the PolySia-binder in the Treatment of Tumour
[0100] For establishment of a mouse model of polySia-expressing human xenograft tumours, 110.sup.7 human rhabdomyosarcoma cells (TE671) were injected s.c. into the flank of nude mice. Once the tumours had reached a palpable size of 100 mm.sup.3, virotherapy was applied by intratumoural infiltration of 510.sup.8 ifu of the polySia-specific 307-Ad, or hTert-Ad as control, respectively.
[0101] Treatment was repeated after 10 days and tumour size was monitored each 3-4 days using a digital caliper. Size was calculated using the formula V=(LB.sup.2)/2. The results are depicted in
[0102] This in vivo example shows that the polySia-binder of the invention when expressed on an adenoviral particle results in retardation of tumour growth of polysialic acid bearing tumour cells.