NOVEL IMMUNOTHERAPIES TARGETING PD-1 WITH ANTI-PD-1/IL-15 IMMUNOCYTOKINES
20230034677 · 2023-02-02
Inventors
- Yves Levy (Creteil, FR)
- Giuseppe Pantaleo (Pully, CH)
- Craig FENWICK (Pully, CH)
- Sandra ZURAWSKI (Dallas, TX, US)
- Gérard ZURAWSKI (Dallas, TX, US)
- Nabila SEDDIKI (Creteil, FR)
Cpc classification
C07K2319/75
CHEMISTRY; METALLURGY
Y02A50/30
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
A61P35/00
HUMAN NECESSITIES
International classification
Abstract
The inventors now provide novel IL-15/IL-15 receptor alpha (IL-15Rα) fusion proteins. Furthermore, as a complement to anti-PD-1 therapy, the inventors developed a series of anti-PD-1/IL-15/IL-15 receptor alpha (IL-15Rα) immunocytokines that are able to simultaneously target multiple steps in the immune activation process. The development of said immunocytokines provides the potential benefits associated with anti-PD-1 antibodies and IL-15 administered individually with several distinct advantages. These include a significantly extended in vivo half-life relative to the IL-15 therapy, administration of a pre-formed IL-15/IL-15Rα complex that would preclude the need for IL-15Rα trans-presentation, high activity leading to a low target therapeutic dose and targeted delivery of IL-15 to regions with high PD-1 cells that will limit off-target adverse events.
Claims
1. An IL-15/IL-15 receptor alpha (IL-15Rα) fusion protein comprising i) a IL15-R alpha sushi-containing polypeptide comprising an amino acid sequence having at least 80% of identity with the amino acid sequence of SEQ ID NO:1 ii) a linker having an amino acid sequence as set forth in SEQ ID NO:2 and iii) an IL-15 polypeptide comprising the amino acid sequence having at least at least 80% of identity with the amino acid sequence of SEQ ID NO:3; a nucleic acid encoding the IL-15/IL-15 receptor alpha fusion protein, a vector that comprises the nucleic acid or a host cell which has been transfected, infected or transformed by the nucleic acid.
2. The IL-15/IL-15 receptor alpha fusion protein of claim 1, wherein the IL-15/IL-15 receptor alpha fusion protein has the amino acid sequence as set forth in SEQ ID NO:4.
3. A heavy chain of an antibody that is fused to the IL-15/IL-15 receptor alpha fusion protein of claim 1, a nucleic acid encoding the heavy chain, a vector that comprises the nucleic acid or a host cell which has been transfected, infected or transformed by the nucleic acid.
4. The heavy chain of claim 3, wherein the heavy chain is fused to the IL-15/IL-15 receptor alpha fusion protein via a linker.
5. The heavy chain of claim 4 wherein the linker comprises the amino acid sequence as set forth in SEQ ID NO:5.
6. The heavy chain of claim 5 wherein the linker has the amino acid sequence as set forth in SEQ ID NO:6.
7. The heavy chain of claim 3, wherein the heavy chain is from an antibody having specificity for PD-1.
8. The heavy chain of claim 7, wherein the heavy chain comprises a VH domain as set forth in SEQ ID NO:7, 8 or 9.
9. The heavy chain of claim 7, wherein the heavy chain comprises an IgG Fc region of an IgG4 immunoglobulin.
10. The heavy chain of claim 7, wherein the heavy chain comprises an amino acid sequence as set forth in SEQ ID NO:10, 11 or 12.
11. The heavy chain of claim 7, wherein the heavy chain has the amino acid sequence as set forth in SEQ ID NO:13, 14, or 15.
12. An immunocytokine a heavy chain of an antibody that is fused to the IL-15/IL-15 receptor alpha fusion protein of claim 1, a nucleic acid that encodes the immunocytokine, a vector that comprises the nucleic acid or a host cell which has been transfected, infected or transformed by the nucleic acid.
13. The immunocytokine claim 12, wherein the immunocytokine has specificity for PD-1.
14. The immunocytokine of claim 12 wherein the heavy chain has the amino acid sequence as set forth in SEQ ID NO:13, 14, or 15.
15. The immunocytokine of claim 12, wherein the immunocytokine comprises: a heavy chain a set forth in SEQ ID NO:13 and a light chain a set forth in SEQ ID NO:16, a heavy chain a set forth in SEQ ID NO:14 and a light chain a set forth in SEQ ID NO:17 or a heavy chain a set forth in SEQ ID NO:15 and a light chain a set forth in SEQ ID NO:18.
16. (canceled)
17. (canceled)
18. (canceled)
19. (canceled)
20. The nucleic acid of claim 3, wherein the nucleic acid comprises the nucleic acid sequence as set forth in SEQ ID NO:19 or 20.
21. (canceled)
22. (canceled)
23. (canceled)
24. (canceled)
25. (canceled)
26. (canceled)
27. A method of reducing T cell exhaustion, treating cancer or treating an infectious disease in a subject in need thereof comprising administering to the subject a therapeutically effective amount of at least one anti-PD-1 immunocytokine of claim 13.
28. (canceled)
29. (canceled)
30. The method of claim 27, wherein the infectious disease is a viral infection caused by a single or double stranded RNA or a DNA virus, which infects animals, humans and plants, wherein the single or double stranded RNA or the DNA virus is selected from the group consisting of retroviruses, poxviruses, immunodeficiency virus (HIV), echovirus, parvovirus, rubella virus, papillomaviruses, congenital rubella, Epstein-Barr virus, mumps, adenovirus, AIDS, chicken pox, cytomegalovirus, dengue, feline leukemia, fowl plague, hepatitis A, hepatitis B, HSV-1, HSV-2, hog cholera, influenza A, influenza B, Japanese encephalitis, measles, parainfluenza, rabies, respiratory syncytial virus, rotavirus, wart, yellow fever, adenovirus, a herpesvirus, a poxvirus, a picornavirus, an orthomyxovirus, a paramyxovirus, a coronavirus, a papovavirus, a hepadnavirus, a flavivirus, or a retrovirus.
31. A method for eliciting and/or enhancing B-cell and/or T-cell response against an antigen or a plurality of antigens, in a subject in need thereof, comprising administering to said subject a therapeutically effective amount of the anti-PD-1 immunocytokine of claim 13 in combination with the antigen or the plurality of antigens.
32. The method of claim 31 wherein the antigen or the plurality of antigen are conjugated to a DC-targeting antibody.
33. A pharmaceutical comprising the IL-15/IL-15 receptor alpha (IL-15Rα) fusion protein of claim 1 and a pharmaceutically acceptable carrier.
34. A pharmaceutical comprising the immunocytokine of claim 12 and a pharmaceutically acceptable carrier.
35. A vaccine composition comprising the immunocytokine of claim 13.
Description
FIGURES
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EXAMPLE 1
[0135] In the design of immunocytokines, our focus was on identifying therapeutic agents that had improved potency in enhancing antigen specific T cell proliferation relative to anti-PD-1 therapy and a sufficiently long in vivo half-life. A second consideration was the production yield and biophysical stability of these immunocytokines that will facilitate the advancement of a promising candidate for in vivo testing and pre-clinical profiling. Three separate immunocytokine designs were evaluated as illustrated in
EXAMPLE 2
[0136] The increased level of CD8.sup.+ T cell proliferation in the presence of the different immunocytokine highlights their superior functional activity relative to anti-PD-1 therapy alone. However, equally important is that CD8.sup.+ T cell expansion is specific for the HIV peptide antigen used in the stimulation. The specificity of the enhanced CD8.sup.+ T cell proliferation in the presence of immunocytokines was determined by staining of CFSE low proliferating CD8.sup.+ T cells with the pentamer MHC-HIV peptide complex. Flow cytometry results in
EXAMPLE 3
[0137] To further characterize these immunocytokines as therapeutic agents, pharmacokinetic studies were performed in C57BL/6 mice that were dosed with the 2 mg/kg of the different drugs and serum samples were collected over the following 7 days. PK properties of Keytruda and the three immunocytokine were determined using Luminex assays to detect human IgG or human IgG with bound IL-15 over the course of the study (
EXAMPLE 4
[0138] Based on our previous results, we reasoned that therapeutic DC-based vaccination could be combined with an immuno-modulatory cytokine fused to an immune checkpoint inhibitor in order to increase T cell responses. To this end, we used an αPD-1 monoclonal antibody (Keytruda, a clinical molecule) that proved its' potency in the cancer field and IL-15/IL-15Rα, a cytokine known to impact effector CD8.sup.+ T cell proliferation.
[0139] PBMCs from weekly post-vaccination (Dalia1, n=15) were stimulated in vitro with Gag-P24 peptides pools in the presence or not of αPD-1_IL-15/IL-15Rα fusion, αPD1 alone, IL-15/IL-15α alone or αPD-1+IL-15/IL-15α (refer to experimental design,
[0140] We demonstrate that in the presence of α-PD-1_IL-15/IL-15Rα fusion, Gag-P24 stimulated PBMCs from cART HIV-1.sup.+ vaccinated patients led to a significant increase in HIV-1 specific T cell responses as compared to the other conditions. In
EXAMPLE 5
[0141] In order to depict CD8.sup.+HIV-1 specific cells we used pentamers staining (Proimmune, UK) and flow cytometry analyses after in vitro proliferation of PBMCs from 6 patients (Dalia1, week16) that were stimulated with HLA-restricted peptides pools. After a 6 day-in vitro proliferation we performed an overnight re-stimulation with the specific peptides and performed CFSE stainings and flow cytometry to measure CD8.sup.+ proliferation and intracellular cytokine production (IL-2, TNFα, IFN-γ). The results demonstrated that PBMCs stimulation in the presence of α-PD-1_IL-15/IL-15Rα fusion significantly increased CD8.sup.+ pentamers.sup.+ cell proliferation and cytokines production, as compared to αPD1 alone, which showed similar responses when compared to the condition with only peptides stimulation (
EXAMPLE 6
[0142] In order to demonstrate that αPD-1_IL-15/IL-15Rα fusion could be also used with another DC-based vaccine (anti-CD40.HIV5pep-DC), we performed in vitro experiments where anti-CD40.HIV5pep construct has been loaded on matured and differentiated CD14.sup.+ monocytes as shown in the experimental design below (
[0143] Of note, for the read-out experiments using the OX40 assay, we performed 2 conditions: in the first one we stimulated PBMCs from patients with Gag P24 in the presence or not of αPD-1_IL-15/IL-15Rα fusion and in the second condition we cocultured PBMCs with anti-CD40.HIV5pep-DC in the presence or not of αPD-1_IL-15/IL-15Rα fusion. The results shown in
[0144] Finally, we measured intracellular cytokines (IL-2/TNFα/IFNγ) in both CD4+ and CD8.sup.+ cells (addition of brefeldin A 6 hrs before the end of the 44 hrs of OX40assay).
[0145] Altogether these results demonstrate that i) DC-targeting (PBMCs co-cultured with anti-CD40.HIV5pep-DCs) leads to better T cell responses as compared to Gag P24-stimulated PBMCs and ii) combination of αPD-1_IL-15/IL-15Rα fusion boosted CD8.sup.+-specific responses (proliferation and cytokines production) and decreased CD4.sup.+-specific Tregs, suggesting that αPD-1_IL-15/IL-15Rα fusion is good tool that can be pushed to the clinic.
EXAMPLE 7: Efficacy of Anti-PD-1/IL-15/IL15Rα Immunocytokines in the in Vivo Panc02 Mouse Tumor Model
[0146] The objective of this study was to evaluate the in vivo therapeutic efficacy of the anti-PD-1/IL-15/IL-15Rα immunocytokine test agents described in this application in the treatment of a subcutaneous Panc02 murine pancreatic cancer xenograft in female HuGEMM hPD-1 mice. The Panc02 tumor cells are poorly immunogenic and represent a challenging tumor model for most cancer immunotherapies.
[0147] The HuGEMM PD-1 model performed by CrownBio was developed by knocking-in human exon 2 to replace its mouse PD-1 counterpart. This allows for the in vivo efficacy evaluation of human therapeutic antibodies, which recognize the humanized PD-1 receptor. Mice of age 6-8 weeks were inoculated with 3×10.sup.6 Panc02 tumor cells in 0.1 mL of PBS and the study was initiated 7 days later when the mean tumor size reaches approximately 100 (70-130) mm.sup.3. All animals were randomly allocated to five study group arms based on “Matched distribution” method (StudyDirector™ software, version 3.1.399.19) with 10 mice per group. The five investigational arms of the study included: 1) PBS untreated control, 2) pembrolizumab (Keytruda®) anti-PD-1 twice weekly treatment at 5 mg/kg, 3) pembrolizumab (Keytruda®) at 5 mg/kg+0.1 mg/kg of the IL-15/IL-15Rα ALT-803 super agonist, both administered twice weekly, 4) Keytruda fused to IL-15/IL-15Rα immunocytokine (IC) administered at 2 mg/kg twice weekly and 5) NB01b anti-PD-1 antibody fused to IL-15/IL-15Rα immunocytokine (IC) administered twice weekly at 2 mg/kg. Keytruda used in the study was a clinical lot of antibody purchased from the Lausanne University Hospital. The IL-15/IL-15Rα ALT-803 super agonist and immunocytokines were recombinant proteins produced independently through transient transfection of CHO express or HEK 293T mammalian cell lines. The proteins were expressed with signal sequences that was cleaved upon secretion from the transfected cells. Each of the therapeutic proteins was then purified from the cell medium using a protein A affinity column. Following buffer exchange through dialysis against PBS, therapeutic agents were verified with an limulus amebocyte lysate (LAL) kit from Charles River and endotoxin levels determined to be less than 1 EU/ml. All therapeutic agent were administered intraperitoneal as a solution in PBS buffer. Tumor volumes in all mice was measured twice per week in two dimensions using a caliper, and the volume expressed in mm.sup.3 using the formula: volume=(length×width×width)/2. A tumor volume cutoff of 1500 mm.sup.3 was selected for establishing mouse survival criteria in this study.
[0148] Longitudinal evaluation of mouse tumor volumes in each of the study arms showed that at Day 10 under therapy, all anti-PD-1 based therapies showed signs of tumor suppression relative to the PBS untreated control mice (
[0149] The relative levels of tumor suppression between the different therapies and the PBS arm was evaluated by comparing the tumor volume area under the curve values for Days 7 to 24 of the study (
[0150] The anti-tumor efficacy of the different therapies was also evaluate using a Kaplan-Meier Survival Curve analysis (
[0151] Overall, these studies show that the immunocytokine fusion of the NB01b anti-PD-1 antibody with the IL-15 and IL-15Rα has a significant functional activity in both suppressing Panc02 tumor grown and in prolonging mouse survival in comparison to the untreated mice. This demonstrated activity of the immunocytokine was equivalent in efficacy as compared to the Keytruda+super agonist dual therapy.
REFERENCES
[0152] Throughout this application, various references describe the state of the art to which this invention pertains. The disclosures of these references are hereby incorporated by reference into the present disclosure.