Method of expressing goldfish gfTP1 tranposase protein
09944953 ยท 2018-04-17
Assignee
Inventors
- Shuming ZOU (Shanghai, CN)
- Xiayun Jiang (Shanghai, CN)
- Haili Xu (Shanghai, CN)
- Fei Hou (Shanghai, CN)
- Luodan Cheng (Shanghai, CN)
- Xiaodan Shen (Shanghai, CN)
- Shouchang Deng (Shanghai, CN)
Cpc classification
C12N15/8509
CHEMISTRY; METALLURGY
International classification
C12N9/12
CHEMISTRY; METALLURGY
C12N15/70
CHEMISTRY; METALLURGY
Abstract
An expression method of active goldfish gfTP1 transposase protein comprises: constructing an expression vector comprising a gfTP1 transposase reading frame of a goldfish Tgf2 transposon, after transferred into escherichia coli Rosetta 1 (DE3), culturing an expression strain until absorbance of a bacteria solution under OD.sub.600 reaches 0.3-0.4, adding IPTG, culturing under 21-22 C. in shaking of 150-200 rpm, inducing to express soluble recombinant protein, and purifying to obtain a functionally active transposase. Also provided are an expression plasmid and the expression strain of the goldfish gfTP1 transposase protein, and a use of the strain in transgenosis.
Claims
1. A method of expressing goldfish gfTP1 transposase protein comprising: a) culturing E. coli Rosetta 1 (DE3) transformed with a pET-28A plasmid comprising a nucleic acid encoding the goldfish gfTP1 transposase protein encoded by SEQ ID NO: 5, wherein the nucleic acid is inserted between BamHI and XhoI sites, until the optical density at a wavelength of 600 nm (OD600) value of the culture reaches 0.3-0.4; b) adding isopropyl beta-D-thiogalactoside (IPTG); c) shaking the culturing from b) at 150-200 rpm at 21-22 C., thereby expressing the goldfish gfTP1 transposase protein.
2. The method of claim 1, wherein the E. coli Rosetta 1 (DE3) is cultured until the OD600 value of the culture reaches 0.35 in step a), the ITPG is added in step b) and the resultant culture in step b) is shaken at 150-200 rpm at 22 C.
3. The method of claim 1, wherein the time of shaking is 4-6 h.
4. The method of claim 1, wherein the concentration of IPTG in culture is 0.6-1.0 mM.
5. A pET-28A plasmid comprising a nucleic acid encoding the goldfish gfTP1 transposase protein encoded by SEQ ID NO: 5, wherein the nucleic acid is inserted between BamHI and XhoI sites.
6. A culture comprising E. coli Rosetta 1 (DE3) transformed with the plasmid of claim 5.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENT
(11) The following are the detailed descriptions of embodiments of this invention with reference to the drawings. The methods without specific conditions in the following embodiments are usually done in accordance with normal conditions, such as the said conditions in Molecular Cloning A Laboratory Manual edited by J. Sambrook et al. and published by Science Press (China) in 2002, or the conditions recommended by manufacturer. Percentages and parts are by weight unless otherwise indicated.
Embodiment 1 Expression and Identification of Recombinant Goldfish gfTP1 Transposase Protein
(12) 1. Materials and Methods
(13) 1.1. Materials
(14) Goldfish embryos were provided by Qingpu Fish Breeding Experimental Station of Shanghai Ocean University. The primers were synthesized by Sangon Biotech (Shanghai) Co., Ltd. Ni.sup.2+-affinity column was purchased from GE Healthcare. Ultrafiltration tubes were purchased from Millipore Corporation, USA. The restriction enzyme, DNA Polymerase and T4 DNA ligase were purchased from Takara. The vector pET-28a and the host strains DH5, BL21 (DE3) and Rosetta 1 (DE3) were purchased from Merck. Electrophoretic Mobility Shift Assay (EMSA) Kits were purchased from Beyotime Biotechnology. The other reagents were purchased from Sangon Biotech (Shanghai) Co., Ltd, and were all of analytical grade or higher purity.
(15) 1.2. Methods
(16) 1.2.1. Molecular Cloning of the gfTP1 Transposase-Encoding ORF
(17) Total RNA was isolated from ten Ryukin goldfish (Latin name: Carassius auratus Ryukin) embryos at 24 hours post-fertilization using TRIzol reagent (Invitrogen). Single stranded cDNA was reverse-transcribed from 1 g total RNA using MMLV reverse transcriptase and oligo-dT primers of TaKaRa RNA PCR Kit (AMV) Ver. 3.0. A pair of primers designed basing on the goldfish Tgf2 transposon ORF (GenBank JN886586) are as follows: the upstream primer, 5-CGCGGATCCATGTTCATTGGTCCTTTGG-3 (SEQ ID NO. 1), and the downstream primer, 5-CCGCTCGAGCTACTCAAAGTTGTAAAACCT-3 (SEQ ID NO. 2). The upstream and downstream primer contained BamHI and XhoI restriction enzyme sites (marked by underline) respectively. PCR was performed using the single stranded cDNA as the template, the primers, and Pfu DNA polymerase, with the procedure: 94 C. 5 min, then 94 C. 30 s, 55 C. 30 s, 72 C. 60 s, for 35 cycles, finally extended at 72 C. for 5 min. The amplified products were purified by 1.2% agarose gel electrophoresis running at 5 V/cm in TBE buffer. The target fragments in agarose gel were tapped and recovered and cloned into pMD19-T vector (TaKaRa), transformed into DH5a E. coli cells. The positive clones were picked into LB liquid medium with 506 g/mL ampicillin and shaken overnight at 37 C. 200 l bacterial liquid was stored by glycerin, and sent to Sangon Biotech (Shanghai) Co., Ltd to be sequenced from both directions. Then, the constructed plasmid pMD-19T-gfTP1 was obtained.
(18) 1.2.2. Construction of Plasmid for Expressing Goldfish gfTP1 Transposase
(19) The plasmid pMD-19T-gfTP1 was digested with BamHI and XhoI restriction enzymes, and the digested products were purified by 1.2% agarose gel electrophoresis running at 5 V/cm in TBE buffer. The target fragments were tapped and recovered from the agarose gels to obtain the double digested products gfTP1. The vector pET-28a showed in
(20) 1.2.3. Prokaryotic Expression of Goldfish gfTP1 Transposase
(21) 4 ml of an overnight culture of the positive Rosetta 1 (DE3) E. coli bacterial liquid was added to 100 ml of LB medium with the following formula: Tryptone 10 g/L, Yeast extract 5 g/L, NaCl 10 g/L, and shaken at 37 C. When the culture reached a predetermined OD.sub.600 value (6 gradients: 0.3, 0.35, 0.4, 0.6, 0.65 and 0.7), 0.8 mM IPTG was added to induce protein expression, with additional shaking at 180 rpm at 22 C. for 5 h. The culture was centrifuged at 10,000 g for 10 min at 4 C., re-suspended in phosphate buffer (12 mM phosphate, 125 mM NaCl, pH 8.0) and then frozen at 80 C. The thawed cells were lysed by sonication and centrifuged at 12,000 g for 15 min at 4 C. The lysate, supernatant, and pellet were subjected to SDS-PAGE and then stained by Coomassie brilliant blue referring to the literature: U. K. Laemmli, Cleavage of structural proteins during the assembly of the head of bacteriophage T4, Nature 277 (1970) 680-685. The supernatant was purified using Ni.sup.2+-affinity column.
(22) 1.2.4. Purification of Recombinant Goldfish gfTP1 Transposase
(23) The supernatant collected from sonicated lysates was loaded onto a Ni.sup.2+-affinity column in a FPLC AKTA Purifier system and equilibrated with 10 column volumes of binding buffer. The column was washed with elution buffer (500 mM sodium phosphate, 0.5 M NaCl, 500 mM imidazole, pH 7.4) at a flow rate of 1 ml/min using a linear gradient within 5 column volumes. Protein concentrations were monitored at 280 nm. The elution peak was analyzed by SDS-PAGE and Coomassie brilliant blue staining. The purified recombinant goldfish gfTP1 transposase concentrated by ultrafiltration was stored as a 20% glycerol stock at 80 C.
(24) 1.2.5. Western Blotting
(25) The purified recombinant goldfish gfTP1 transposase was electrophoresed on gels and transferred to PVDF membranes at 80 V for 1 h. The membranes were blocked for 1 h at room temperature with 5% non-fat milk and incubated for 2 h with anti-(His)6 monoclonal antibody. After three washes with 60 ml TBST buffer, the membranes were incubated with sheep anti-rabbit IgG-HRP for 1 h, washed by TBST buffer, treated with enhanced chemiluminescence reagents, exposed to X-ray films, and photographed.
(26) 1.2.6. Identification of Recombinant Goldfish gfTP1 Transposase
(27) Recombinant goldfish gfTP1 transposase was excised from SDS-PAGE gels and digested with trypsin. Peptide fragments of the transposase were identified using MALDI-TOF/TOF.
(28) 1.2.7. DNA Binding Activity Assay of Recombinant Goldfish gfTP1 Transposase
(29) DNA binding activity of the recombinant goldfish gfTP1 transposase was evaluated by DNA binding activity assay (EMSA) using EMSA Biotin Labeling Kit. Tgf2 ITRs and STRs of left and right arm with a length of 50 bp was labeled by biotin. The probes basing on left and right arm were respectively as follows:
(30) TABLE-US-00001 (SEQIDNO.3) 5-CAGAGGTGTAAAAGTACTTAAGTAATTTTACTTGATTACTG TACTTAAGT-3, (SEQIDNO.4) 5-CAGAGGTGTAAAAGTACTAAAAATATTTACTAAAGTGAAAG TACAAGTAT-3.
(31) The DNA probes and recombinant goldfish gfTP1 transposase were incubated at 25 C. for 0.5-1 h. After electrophoresed on 4% PAGE gels at 80 V for 0.5-1.5 h, the proteins on PAGE gels were transferred to nylon membranes at 80 V for 1.5 h. The membranes were irradiated by UV rays with the irradiation intensity of 120 mJ/cm.sup.2 for 50 s, incubated using EMSA Kit, treated with enhanced chemiluminescence reagents, exposed to X-ray films, and photographed.
(32) 2. Results and Discussion
(33) 2.1. Construction of Expression Vector of Recombinant Goldfish gfTP1 Transposase
(34) The goldfish hAT-superfamily transposon Tgf2 is 4,720 bp in full length and consists of four exons (
(35) The gfTP1 transposase-encoding ORF sequence showed as SEQ ID NO. 5 was amplified using the total RNA of Ryukin goldfish embryos at 24 hpf as template, and cloned into expression vector pET-28a. The constructed recombinant prokaryotic expression vector pET28a-gfTP1 contained (His)6-tag encoding 34 aa residues (
(36) 2.2. Expression of Recombinant Goldfish gfTP1 Transposase
(37) The purpose of this invention was to obtain active recombinant goldfish gfTP1 transposase protein, and thus how to express soluble recombinant transposase but not in inclusion bodies was the key factor to succeed. This invention used Rosetta 1 (DE3) E. coli instead of BL21 (DE3) E. coli as host strain to solve the codon bias problem existing in eukaryotic gene expression in E. coli.
(38) The expression of recombinant goldfish gfTP1 transposase did not be detected in any expression condition when the recombinant plasmid was transformed into BL21 (DE3) E. coli cells.
(39) The expression conditions in Rosetta 1 (DE3) E. coli including IPTG concentration, induction temperature and bacterial liquid concentration when IPTG was added were optimized in order to overcome the problem of low levels of foreign protein expressed in prokaryotes. We found that IPTG concentration had little effect on the expression level of the soluble transposase, but the induction temperature had significant effect, with the result that a large amount of recombinant goldfish gfTP1 transposase was induced at 22 C. SDS-PAGE gel electrophoresis showed an obvious protein band of 80 kDa, in agreement with our estimate about the molecular weight of recombinant goldfish gfTP1 transposase (
(40) 2.3. Purification of Recombinant Goldfish gfTP1 Transposase
(41) The cells collected from culture were frozen at 80 C., thawed, sonicated and centrifuged. The collected supernatants were loaded onto a Ni.sup.2+-affinity column using an AKTA FPLC system, and the elution peak was collected and analyzed by SDS-PAGE, showing that the molecular weight of recombinant goldfish gfTP1 transposase illustrated on the electrophoretogram was in accord with the theoretical estimate. These results suggested that soluble recombinant goldfish gfTP1 transposase were purified, while avoiding co-purification of other proteins (
(42) Western blotting assays using antibody specific to the fused (His)6-tag displayed a single band corresponding to recombinant goldfish gfTP1 transposase in the lysates (
(43) 2.4. Identification of Recombinant Goldfish gfTP1 Transposase
(44) The recombinant proteins were excised from SDS-PAGE gels, digested with trypsin and subjected to MALDI-TOF/TOF tandem MS analysis, and the results confirmed that the chromatographically purified protein was indeed the recombinant goldfish gfTP1 transposase. The MS/MS spectra of three sets of oligopeptide fragments were shown in
(45) The first oligopeptide obtained by trypsin digestion was GSSHHHHHHSSGLVPR (SEQ ID NO. 6), corresponding to 2-17 aa residues of the predicted Tgf2 transposase including the vector sequences and (His)6-tag. The molecular weight of the other two oligopeptide fragments were 1592.8 Da and 1650.9 Da respectively, and their sequences were identified as VFGVENNDIETEAR (SEQ ID NO. 7) and VLDQDDGFEFQLPK (SEQ ID NO. 8) respectively by tandem MS analysis (
(46) The results of western blotting assays and tandem MS analysis suggested that the recombinant protein of 79.4 kDa was successfully expressed in E. coli and confirmed to be recombinant goldfish gfTP1 transposase.
(47) 2.5. DNA Binding Activity Assay of Recombinant Goldfish gfTP1 Transposase
(48) Whether the transposase can bind with transposon cis-element relates to transposition activity of the transposase. The binding ability of the purified recombinant goldfish gfTP1 transposase to the cis-element of Tgf2 transposon could be identified by EMSA. In this experiment, two DNA probes respectively corresponding to 5 and 3 end of Tgf2 transposon were synthesized, labeled by biotin, and then incubated with recombinant goldfish gfTP1 transposase at 25 C. for 0.5-1 h.
(49) The results showed that electrophoretic mobility of the complex of 1 recombinant goldfish gfTP1 transposase and Tgf2 transposon probes was obviously slower than that of free probes, while no binding signal was detected in the group of the biotin-labeled probes for left (or right) arm (
Embodiment 2 Optimization of Expression Conditions of the Recombinant Goldfish gfTP1 Transposase Protein
(50) According to the method of embodiment 1, The Rosetta 1 (DE3) E. coli cells carrying the recombinant plasmid pET28a-gfTP1 were cultured overnight, then 4 ml bacterial liquid was added to 100 ml of LB medium and shaken at 37 C. When the culture reached a predetermined OD.sub.600 value, IPTG at certain concentrations was added to induce the expression of recombinant goldfish gfTP1 transposase protein, with additional shaking at 200 rpm at certain temperatures for 4 h. 5 experimental groups were set (Table 1) and repeated 5 times respectively.
(51) TABLE-US-00002 TABLE 1 Experimental Groups OD.sub.600 value Terminal of the culture concen- Culture Experimental group when IPTG tration of temperature No. was added IPTG (mM) ( C.) Experimental Group 1 0.3 0.6 21 Experimental Group 2 0.4 0.7 22 Experimental Group 3 0.3 1.0 22 Experimental Group 4 0.6 0.7 24 Experimental Group 5 0.5 0.8 23
(52) According to the method of embodiment 1, the cells were collected, lysed and centrifuged after culture. The supernatant was collected and purified by Ni.sup.2+-affinity column. Protein concentrations were monitored at 280 nm. The purities of supernatant and elution peak was analyzed by SDS-PAGE, and calculated by Gray-Scale after coomassie brilliant blue staining. The protein liquid was concentrated by ultrafiltration. The differences of protein expression levels among groups were analyzed by one-way ANOVA.
(53) The results were shown in Table. 2, indicating that the total amounts of recombinant goldfish gfTP1 transposase protein in experimental group 1-3 were all significantly higher than that of experimental group 4 (P<0.05) or 5 (P<0.05).
(54) TABLE-US-00003 TABLE 2 The Protein Expression Amount of Every Experimental Group Proportion of the recombinant goldfish gfTP1 transposase protein to total protein (%) Total amount of The the recombinant supernatant The goldfish gfTP1 Experimental group after elution transposase No. cell lysis peak protein (g) Experimental Group 1 5.0 50 1200 Experimental Group 2 4.1 38 800 Experimental Group 3 3.2 33 600 Experimental Group 4 0.7 5.1 76 Experimental Group 5 0.8 5.1 83
Embodiment 3 Expression of Recombinant Goldfish gfTP1 Transposase Protein
(55) According to the method of embodiment 1, the Rosetta 1 (DE3) E. coli cells carrying the recombinant plasmid pET28a-gfTP1 were cultured overnight, then 4 ml bacterial liquid was added to 100 ml of LB medium and shaken at 36 C. When OD.sub.600 value of the culture reached 0.35, IPTG was added to 0.8 mM terminal concentration to induce protein expression, with additional shaking at 150 rpm at 21 C. for 6 h.
(56) Proportion of the recombinant goldfish gfTP1 transposase protein to total protein was calculated according to the method of embodiment 2, with the results that proportion of the recombinant goldfish gfTP1 transposase protein to total protein in the supernatant after cell lysis was 3.6%, and proportion of the recombinant goldfish gfTP1 transposase protein to total protein in the elution peak was 35%. The total amount of the recombinant goldfish gfTP1 transposase protein was 642 g.
(57) Embodiment 4 Transgenic Effect of Recombinant Goldfish gfTP1 Transposase Protein in Zebrafish (Danio rerio)
(58) Zebrafish feeding: the male and female zebrafish for experiment were reared respectively in cycle aquarium at a constant temperature of 28 C. in the condition that 14 h light and 10 h darkness were alternately provided, and fed 2 times per day, one time was given artemia, the other time artificial feed. Males and females zebrafish were put into the same small aquarium with a transparent baffle for dividing the two sex zebrafish at the night before spawning. The baffle was taken away to let the female zebrafish lay eggs and eggs were fertilized naturally in the morning of experiment day.
(59) Microinjection: A mixture solution of the transgenic donor plasmid pTgf2-zf-actin-eGFP with the terminal concentration of 50 ng/l prepared using 0.3 Danieau buffer (containing 0.1% phenol red) and the purified 1 recombinant goldfish gfTP1 transposase protein (720 aa) expressed as embodiment 1 said were used for microinjection. The vector map of the plasmid pTgf2-zf-actin-eGFP was shown in
(60) Result 1: Fluorescence microscopy images of EGFP expression in zebrafish fertilized eggs at 12 h after co-injection of the donor plasmid pTgf2-zf-actin-eGFP and the recombinant goldfish gfTP1 transpopsase were shown in
Embodiment 5 Transgenic Effect of Recombinant Goldfish gfTP1 Transposase Protein in Blunt Snout Bream (Megalobrama amblycephala)
(61) The experiments of induced spawning, artificial insemination, incubation and culture of the blunt snout bream were carried out at the Genetics and Breeding Center for Blunt Snout Bream of Agriculture Ministry of Shanghai Ocean University. The parents of blunt snout bream were all 3 years old, having sexual maturity and good development. The artificial induced spawning for female fish was carried out at 4 p.m by injection with spawning induced drugs of LHRH-A2 (5 /Kg) and HCG (1000 U/Kg), and the half of the dosage injection for male fish. The parent fish injected with spawning induced drugs were temporarily put in circular spawning pool (2 m diameter) under flowing water stimulation, and netted to take sperms and eggs to conduct artificial dry insemination in the next morning.
(62) Microinjection: A mixture solution of the transgenic donor plasmid pTgf2-zf-actin-eGFP with the terminal concentration of 50 ng/l prepared using 0.3 Danieau buffer (containing 0.1% phenol red) and the purified 1 recombinant goldfish gfTP1 transposase protein (720 aa) expressed as embodiment 1 said were used for microinjection. The microinjection apparatus PV830 Pneumatic Pico Pump (US, WPI) driven by N.sub.2 was used to carry out microinjection. The microinjection needle was drawn from glass capillaries of 1 mm diameter by microinjection needle-elongated device and the tip of the needle was removed by tweezers when used. The mixture solution of the transgenic donor plasmid and recombinant goldfish gfTP1 transposase protein was added into the microinjection needle, and injected into the yolk of blunt snout bream embryos at the 1-2 cell stage near to cells. 110.sup.3 l solution containing 50 pg transgenic donor plasmid and 2 ng recombinant goldfish gfTP1 transposase protein was injected into each embryo. After injection, embryos were placed in incubator to incubate with water alteration every 3-4 hours until hatching, and the fluorescent expression in embryos was analyzed regularly (every 6 hours) using fluorescence microscope.
(63) Fluorescence microscopy images of EGFP expression in blunt snout bream fertilized eggs at 72 h after co-injection of the donor plasmid pTgf2-zf-actin-eGFP and recombinant goldfish gfTP1 transpopsase were shown in
(64) The present invention is not intended to limit to embodiments thereof. Further, it will be understood by those skilled in the art that various changes in form and details may be made therein without departing from the spirit and scope of the invention as defined by the appended claims.