Qualitative and quantitative point-of-care assays
09932360 ยท 2018-04-03
Assignee
Inventors
- Scott Thomas Phillips (State College, PA, US)
- Gregory Gerald Lewis (Syracuse, NY, US)
- Jessica Sloane Robbins (New York, NY, US)
Cpc classification
Y10T436/206664
GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
International classification
G01N33/52
PHYSICS
Abstract
Disclosed herein are equipment-free flow-through assay devices based on patterned porous media, methods of making same, and methods of using same. The porous, hydrophilic media are patterned with hydrophobic barriers for performing assays on liquids.
Claims
1. A capillary-driven device, comprising a hydrophobic detection reagent in a porous media, wherein the hydrophobic reagent changes to hydrophilic by the presence of a target analyte, and wherein the hydrophobic detection reagent is a compound of formula (I), ##STR00012## wherein, R.sup.1 and R.sup.2 are each independently, at each occurrence, selected from the group consisting of hydrogen, C.sub.1-C.sub.6-alkyl and C.sub.1-C.sub.6-alkoxy; x and y are each an integer independently selected from 0, 1, 2, 3, and 4; and n is an integer selected from 0 to 20.
2. The device of claim 1, wherein the device is a capillary-driven vertical flow-through device, a capillary-driven lateral flow-through device, or a combination thereof.
3. The device of claim 1, wherein the hydrophobic detection reagent is an oligomer or polymer.
4. The device of claim 1, wherein the hydrophobic detection reagent is selected from a carbamate, ether, polyether, a poly(phthalaldehyde), a polyvinyl carbamate, a polybenzyl carbamate, or a combination thereof.
5. The device of claim 1, wherein the hydrophobic detection reagent responds to hydrogen peroxide to convert from hydrophobic to hydrophilic molecules.
6. The device of claim 1, wherein R.sup.1 and R.sup.2 are each C.sub.1-C.sub.6-alkoxy.
7. The device of claim 1, wherein R.sup.1 and R.sup.2 are each methoxy.
8. The device of claim 1, wherein n is an integer selected from 0 to 20.
9. The device of claim 1, wherein an assay region of the device comprises one or more responsive agents that select for specific analytes.
10. The device of claim 1, comprising an assay region derivatized with a substrate.
11. The device of claim 1, comprising an immobilized enzyme.
12. The device of claim 1, comprising a first lateral flow channel leading to a first vertical flow column containing a plurality of treated layers; and a second lateral flow channel leading to a second vertical flow column containing a plurality of treated layers.
13. The device of claim 12, wherein the second vertical flow column is configured to correct for internal and/or external factors that affect the rate of the sample within the device, except for the effect of the target analyte on the rate.
14. The device of claim 1, comprising a layer containing a dye for visualization of the sample in a visualization layer, wherein the dye in the dye layer is separate from the hydrophobic detection reagent.
15. The device of claim 1, wherein the concentration of an analyte in a sample is determined by measuring the time for the sample to flow through the device after addition of the sample.
16. The device of claim 1, wherein the concentration of an analyte in a sample is determined by visually counting the number of analyte-dependent bars after addition of the sample.
Description
BRIEF DESCRIPTION OF THE DRAWINGS
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DETAILED DESCRIPTION
(30) Disclosed herein are equipment-free flow-through assay devices based on patterned porous media, methods of making same, and methods of using same. The assay devices can be capillary-driven devices that include a hydrophobic detection reagent in a porous media. The hydrophobic reagent changes to hydrophilic by the presence of a target analyte.
(31) Porous, hydrophilic media can be patterned with hydrophobic barriers for performing assays on liquids. One example of a useful hydrophilic medium for assays is paper, which is inexpensive, disposable, wicks liquids rapidly, and does not require special handling procedures. The paper or other porous, hydrophilic medium can be patterned with hydrophobic barriers that provide spatially defined regions for fluid transport based on capillary action. These hydrophobic barriers, such as wax, can provide an impermeable barrier throughout the entire thickness of the porous, hydrophilic medium within defined areas. The regions defined by the hydrophobic barriers contain the hydrophilic, porous medium, rather than being empty as is common in glass or polymeric (PDMS) microfluidic devices.
(32) Detection Reagents
(33) The hydrophobic detection reagent can be a responsive hydrophobic oligomer. The detection reagent can be a responsive small molecule, oligomer or polymer, including, but not limited to, polyethers, poly(phthalaldehyde), polyvinyl carbamates, and other polycarbamates (e.g., polybenzyl carbamates). One example is an aryl boronate (referred to as the end-cap) protected oligomeric polycarbamate that is hydrophobic.
(34) Responsive Reagents
(35) In some embodiments, to perform an assay, an assay region of the hydrophilic medium can be derivatized with responsive reagents such as (but not limited to) small molecules, signal transduction molecules, substrates, aptamers, antibodies, or proteins, that interact with the target analyte. For example to detect hydrogen peroxide, an assay region of the hydrophilic medium can be derivatized with a hydrophobic small molecule detection reagent that selectively reacts with hydrogen peroxide. The presence of the hydrophobic detection reagent modifies the wetting properties of the assay region, converting the hydrophilic, porous medium to hydrophobic. When the hydrophobic detection reagent reacts with hydrogen peroxide, it converts to hydrophilic byproducts, switching the wetting properties of the assay region to hydrophilic. In another example, a plurality of assay regions, derivatized with different responsive reagents, can be used in order to detect a target enzyme, such as alkaline phosphatase. In the first assay region encountered by the sample, the assay region is derivatized with a substrate, such as glucose 6-phosphate, that selectively reacts with the target enzyme to produce glucose. Following the production of glucose, the sample can encounter an assay region containing an immobilized enzyme (immobilized on a bead or on the paper itself), such as glucose oxidase, that generates hydrogen peroxide from the glucose within the sample. The hydrogen peroxide is detected with an assay region derivatized with a hydrophobic small molecule detection reagent that selectively reacts with hydrogen peroxide. The presence of the hydrophobic detection reagent modifies the wetting properties of the assay region, converting the hydrophilic, porous medium to hydrophobic. When the hydrophobic detection reagent reacts with hydrogen peroxide, it converts to hydrophilic byproducts, switching the wetting properties of the assay region to hydrophilic. In general a wide variety of reagents can be used in assay devices (i) to detect analytes, (ii) to modify the pH of the sample solution, (iii) to modify the wetting properties of the hydrophilic, porous medium, (iv) to generate additional reagents necessary for the assay to be performed, or (v) to interact with other responsive reagents in order to initiate a signal transduction pathway (e.g., a thiol interacting with a disulfide within another responsive reagent). These reagents can include, but are not limited to, antibodies, aptamers, responsive polymers, proteins, salts, or organic small molecules. These reagents could be adsorbed to the porous, hydrophilic medium non-covalently (through non-specific interactions) or covalently.
(36) Device Assembly
(37) In some embodiments, the vertical flow-through assay device includes multiple alternating layers of a porous, hydrophilic medium that is patterned with hydrophobic barriers and protective coatings (or insulating material) that hold the layers of the device in contact, such as double sided tape, adhesive, or laminate. The fluid flows vertically from one layer to another, constrained by the patterned hydrophobic barriers. A plurality of the defined areas of porous, hydrophilic medium can be treated prior to assembly of the device to provide an assay for a target analyte. Some embodiments may include both lateral and vertical flow-through of the liquid.
(38) Fixed Sample Volume
(39) To obtain a quantitative measurement of an analyte in a sample, a fixed volume of liquid can be deposited in the device. In some embodiments, a defined volume of fluid (or a volume approximately close to the defined volume) can be obtained through patterning the hydrophilic, porous medium using hydrophobic barriers. The hydrophobic barriers generate microchannels, sample wells, or regions that accept a fixed volume of liquid.
(40) TABLE-US-00001 TABLE 1 Effect of oligomer length and electronics on limit of detection for quantifying hydrogen peroxide within a sample. Compound Number of Repeating Units Limit of Detection (M) 180 0 3125.4 200 0 168.5 210 1 24.8 220 2 11.8 230 5 3.7 240 8 3.2
Spotting Reagents
(41) In some embodiments, reagents can be spotted using capillary tubes and pipets. Ink jet printing and pins, such as used in microarrays, can be used to deposit reagents for mass-production. The reagents can be spotted using organic and/or aqueous solutions. The spotted reagents can be allowed to air dry at room temperature for at least 30 minutes before using the device. The reagents can be dried under vacuum as well.
(42) Flow-Through Device
(43) In some embodiments, the device, 100, is a hydrophilic column made up of a plurality (e.g., 3 to 6 layers) of layers of patterned hydrophilic, porous media with a central, circular defined region (
(44) Enzyme Assay
(45) In some embodiments, the device (300) contains a central column of hydrophilic, porous media that splits the sample into two lateral flow channels leading to two separate vertical flow columns containing a plurality of treated layers where an assay is performed (
(46) Preprocessing
(47) In some embodiments, the device contains layers to remove impurities from the sample that may affect the assay results. The impurities removed may be physical (e.g., dirt) or chemical (e.g., glucose or hydrogen peroxide). The porous media used in the device can be used to filter particles from the sample. In some embodiments, the porous medium used can be selected to filter the sample and remove physical impurities, such as red blood cells. The pore size of the porous media used will determine the particle size that can be removed from the sample. Treatment of the hydrophilic, porous media can bind, or otherwise remove small chemical impurities that cannot be removed based on size. In certain embodiments, the device contains a layer(s) treated with immobilized glucose oxidase (322), followed by a subsequent layer(s) treated with immobilized catalase (332). Glucose that is present within the sample will be converted to hydrogen peroxide in the layer containing glucose oxidase, the generate hydrogen peroxide will then be decomposed by the catalase, eliminating glucose, 510, present within the sample (
(48) Dial Design
(49) In some embodiments, the device functions using a fixed assay time (e.g., 5, 10, 15, or 20 minutes), rather than measuring concentration by the final assay time. One example of the device, 500, contains a central sample addition column, surrounded by a circular array (e.g., 2 to 25 columns) of equally spaced assay columns. The sample is added to the top layer, 510, of the device, in the sample addition region (511), and then wicks down vertically through a plurality (e.g., 4 to 8 layers) of layers, 520-560. The bottom layer, 570, of the device laterally distributes, 571, the sample evenly to each of the surrounding assay columns. The sample then wicks up vertically into each column simultaneously, 562-512. In each column, the sample encounters a layer, 562, treated with buffer salts (e.g., HEPES) before contacting a plurality (e.g., 1 to 4 layers) of layers, 552 and 532, treated with the hydrophobic detection reagent. The presence of the analyte (e.g., hydrogen peroxide) converts the hydrophobic detection reagent to hydrophilic byproducts. In a clockwise manner, each subsequent assay column has an increasing quantity of the hydrophobic detection reagent initially included, starting at the top of the device (12 o'clock position). The sample then wicks through a layer, 522, treated with a dye before reaching the top layer, containing visualization regions, 512, for each column. Within a fixed period of time, the concentration of hydrogen peroxide initially within the sample will only convert a certain quantity of the hydrophobic detection reagent to hydrophilic. The assay columns containing less than or equal to this quantity of hydrophobic detection reagent will have allowed the sample to reach the visualization layer within the fixed assay time, whereas the columns containing more detection reagent than this will not. The concentration of hydrogen peroxide within the sample is measured by counting the number of visualization regions on the top of the device that have changed color at the end of the fixed assay time (
(50) Multiplexed Assays
(51) In some embodiments, multiple assays can be performed simultaneously in a single device, using the same aliquot of sample. The single addition of a sample allows the user to perform multiple assays without additional processing, improving the ease of use for the device. One example includes a device where the sample is added to the top layer of the device, in the sample addition region, before wicking to the distribution layer. The distribution layer laterally distributes the sample evenly to two assay device regions. The sample then wicks down vertically into the two assay device regions, which are substantially identical to each other, but with the responsive reagents necessary to detect two distinct analytes (e.g., glucose 6-phosphate for alkaline phosphatase and lactose for -D-galactosidase, as well as aptamers for the detection of heavy metals). The layout of each of the assay device regions can be similar to 300, or a different configuration, depending the analytes detected, and the method of detection used (e.g., flow-through device, enzyme assay, or dial device).
EXAMPLES
(52) The foregoing may be better understood by reference to the following examples, which are presented for purposes of illustration and are not intended to limit the scope of the invention.
Example 1. Capillary-Driven Device Using Small Molecule Detection Reagents
(53) Capillary-driven devices using small molecule detection reagents were constructed and evaluated.
(54) ##STR00007##
(55) Both of the assays are based on selective changes in the wetting properties of paper, since hydrogen peroxide (a model analyte) oxidatively cleaves compound 1 (the detection reagent;
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(58) The addition of pure water to this type of digital device demonstrates the effect that compound 1 has on the wetting properties of paper (
(59) When hydrogen peroxide is included in the sample, however, the flow-through time is correlated with the concentration of hydrogen peroxide in the sample (
(60) The exponential relationship between hydrogen peroxide concentration and flow-through time illustrated in
(61) Since wicking rates in porous media typically are affected by humidity, the effect of this variable was tested in the flow-through assay. The flow-through time is independent of humidity over the range of 17-62% relative humidity, which is a result that can be attributed to the exceedingly short path length that the sample must travel in the device (ca. 900 m).
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(64) While these studies used hydrogen peroxide as a model analyte for demonstrating the use of analog and digital assays in paper microfluidics, other analytes may be used as well.
Example 2. Capillary-Driven Device Using Oligomer Detection Reagents
(65) Capillary-driven devices using oligomer detection reagents 3-6 were constructed and evaluated.
(66) ##STR00008##
(67) The carbamate oligomers can depolymerize from head-to-tail as phase-switching reagents and be used for increasing the sensitivity of quantitative point-of-care assays that are based on measurements of time. The carbamate oligomers selectively react with hydrogen peroxide (a model analyte) and provide sensitivity by depolymerizing in the presence of the analyte to convert from water-insoluble polymers to water-soluble products. This switching reaction allows a sample to wick through a three-dimensional paper-based microfluidic device, where the flow-through time reflects the quantity of the analyte in the sample. Oligomers as short as pentamers allow quantitative detection to low nanomolar concentrations of the analyte. This approach improves the sensitivity four orders of magnitude compared to devices of Example 1 (limits-of-detection of hydrogen peroxide of Example 2 are approximately 146 nM). By further optimizing the number of layers of paper containing the oligomer in the assay platform, the limit of detection was improved by approximately another order of magnitude, providing a limit of detection of 31 nM and a 50,000-fold improvement. The assay devices can be used in resource-limited environments where many analytes of interest are present in samples at (or below) micro- and nanomolar levels.
(68) The devices including oligomeric detection reagents were prepared according to
(69) Design of the oligomers (
(70) ##STR00009##
(71) Compound 2 was prepared from 4-(hydroxymethyl)-3-methoxyphenylboronic acid pinacol ester and p-nitrophenyl isocyanate. Compounds 3 and 4 were prepared in a step-wise fashion, while oligomers 5 and 6 were prepared according to the route outlined in Scheme 1. This route involved a tin-catalyzed polymerization of monomer 8, wherein the length of the oligomer was controlled by polymerization time. The polymerization reaction was quenched by addition of the aryl boronate end-cap, and a postpolymerization modification was used to append the p-nitrophenyl carbamate.
(72) ##STR00010##
(73) Addition of a methyl ether (such as the methyl ether in compound 2 vs. compound 1) can accelerate the rate of quinone- and azaquinone-methide-mediated release of a benzylic group by as much as 40 compared with a derivative that lacks the methyl ether. After optimizing the quantity of 2 needed for this quantitative flow-through assay, the anticipated difference in rate between compound 1 and compound 2 provided a 17-fold improvement in the sensitivity for the assay (i.e., LOD=1707 M for 1 vs. 103 M for 2). Formation of quinone methide can be a rate-limiting step under the conditions of the assay.
(74) Oligomers 3-6 impart significant improvements in sensitivity to the assay compared to 1 and 2 (
(75) Devices were prepared with one, two, or three layers of paper that were modified with oligomer 3. The relationship between the limit of detection and the total quantity of oligomer 3 was then characterized within the devices to determine the minimum quantity of 3 needed to provide the lowest limit of detection. These experiments revealed that a device containing one layer of oligomer 3 provided a limit of detection for hydrogen peroxide that is nearly 5 better than a comparable device containing three layers of oligomer 3 (e.g., the LOD for one layer of 3==9.4 M, while three layers of 3=46 M). Specifically, the limit of detection worsens by 2 every additional layer of oligomer 3 incorporated into the device. Likewise, the dynamic range for the assay worsens as the number of layers containing oligomer 3 increases. For example, the device containing one layer of oligomer 3 has a dynamic range of 9.7 M to 1000 M, whereas the device containing three layers of oligomer 3 has a smaller dynamic range of 57 M to 500 M. A device with improved sensitivity can provide a single layer where the magnitude of phase-switching is substantial, rather than providing small stages of phase-switching over several layers in a device.
(76) A single layer device was produced, and was used to determine the optimum quantity of oligomer 5 (the oligomer that provided the best limit of detection) needed to provide the lowest limit of detection for quantifying hydrogen peroxide in a sample. This assay requires only 3.4 g of oligomer 5, yet now provides measurements of hydrogen peroxide down to 31 nM, which is a LOD that is 55,000 better than the aformentioned assay, as well as a useful dynamic range.
(77) The LOD for hydrogen peroxide of 31 nM is sufficiently sensitive to measure hydrogen peroxide in rain and other sources of water, for example, where the presence of hydrogen peroxide is indicative of pollution.
(78) Materials. All reactions were performed in flame-dried glassware under a positive pressure of argon unless otherwise noted. Air- and moisture-sensitive liquids were transferred via syringe or stainless steel cannula. Organic solutions were concentrated by rotary evaporation (25-40 mmHg) at 30 C. All reagents were purchased commercially and were used as received unless otherwise noted. 4-Nitrophenyl isocyanate was recrystallized from petroleum ether prior to use. N,N-Dimethylformamide, dimethylsulfoxide, tetrahydrofuran, and triethylamine were purified by known method. Flash-column chromatography was performed by known methods, employing silica gel (60 pore size, 32-63 m, standard grade). Thin-layer chromatography was carried out on silica gel TLC plates (2020 cm w/h, F-254, 250 m). Deionized water was purified by filtration and irradiation with UV light. The papers used were Whatman Chromatography Paper Grade I and Boise Aspen 30 Printer Paper (92 brilliant, 30% postconsumer content), and the tape was Ace Hardware Plastic carpet tape (part #50106).
(79) Methods. Proton nuclear magnetic resonance (.sup.1H NMR) spectra and carbon nuclear magnetic resonance spectra (.sup.13C NMR) were recorded using either a 300 MHz, 360 MHz, or 400 MHz NMR spectrometer at 25 C. Proton chemical shifts are expressed in parts per million (ppm) and are referenced to residual protium in the NMR solvent (CHCl.sub.3 7.26 ppm, CO(CH.sub.3).sub.2 2.05 ppm, or SO(CH.sub.3).sub.2 2.50 ppm). Data are represented as follows: chemical shift, multiplicity (s=singlet, bs=broad singlet, d=doublet, t=triplet, m=multiplet and/or multiple resonances), integration, and coupling constant (J) in Hertz. Carbon chemical shifts are expressed in parts per million and are referenced to the carbon resonances of the NMR solvent (CDCl.sub.3 0 77.0 ppm or CO(CH.sub.3).sub.2 29.8 and 206.3 ppm). UV/vis spectroscopic data were obtained using a six-cell spectrometer. Low resolution and high resolution mass spectra were acquired using mobile phases containing 5 mM ammonium formate. GPC data were acquired on a 3007.5 mm, 3-100 m particle size styrene divinyl benzene copolymer column using 1 mL/min N,N-dimethylformamide as the mobile phase. Molecular weights were calculated from low-angle and right-angle light scattering data. The system was calibrated using polystyrene standards.
(80) Preparation of Compound 2. Triethylamine (52 L, 0.38 mmol, 2.0 equiv) was added dropwise to a solution of 4-(hydroxymethyl)-3-methoxyphenylboronic acid pinacol ester (50 mg, 0.19 mmol, 1.2 equiv) and 4-nitrophenyl isocyanate (26 mg, 0.16 mmol, 1.0 equiv) in tetrahydrofuran (2.0 mL). The reaction mixture was stirred at 23 C. for 4 h. The solvent was removed by rotary evaporation and the residue was purified by silica gel flash column chromatography (10% ethyl acetate in hexanes, increasing to 20% ethyl acetate in hexanes) to afford compound 2 as a white, amorphous solid (46 mg, 0.11 mmol, 67%): IR (cm.sup.1) 3313, 2977, 2360, 1738, 1600, 1549, 1508; .sup.1H NMR (360 MHz, CO(CH.sub.3).sub.2) 9.46 (bs, 1H), 8.22 (d, 2H, J=9.3 Hz), 7.82 (d, 2H, J=9.3 Hz), 7.41 (d, 1H, J=7.3 Hz), 7.36 (d, 1H, J=7.4 Hz), 7.31 (s, 1H), 5.26 (s, 2H), 3.89 (s, 3H), 1.34 (s, 12H); .sup.13C NMR (360 MHz, CO(CH.sub.3).sub.2) 157.6, 154.0, 146.4, 143.4, 129.3, 128.4, 127.8, 125.7, 118.6, 116.4, 84.6, 62.9, 55.8, 25.2 (overlapping peaks in the aromatic region of the .sup.13C spectrum); MS (TOF MS AP) 427.2 (M-H.sup.+); HRMS (TOF MS AP) calcd for C.sub.21H.sub.24N.sub.2O.sub.7B (M-H.sup.+) 427.1677, found 427.1657.
(81) Preparation of Compound 8. p-Toluenesulfonic acid monohydrate (0.35 g, 1.9 mmol, 0.30 equiv) was added in one portion to a solution of compound 7 (2.4 g, 6.2 mmol, 1.0 equiv) in 4:1 tetrahydrofuran-water (62 mL) under an atmosphere of air. The reaction mixture was stirred at 23 C. for 4 h. Ethyl acetate (50 mL) and saturated aqueous sodium bicarbonate (10 mL) were added, each in one portion, and the layers were separated. The organic layer was washed with saturated aqueous sodium bicarbonate solution (150 mL) and was dried over sodium sulfate. The sodium sulfate was removed by filtration, the solvent was removed by rotary evaporation, and the residue was purified by silica gel flash column chromatography (20% ethyl acetate in hexanes, increasing to 60% ethyl acetate in hexanes) to afford compound 8 as a white, amorphous solid (1.5 g, 5.4 mmol, 87%): IR (cm.sup.1) 3540, 3470, 3269, 2963, 1727, 1615, 1547; .sup.1H NMR (400 MHz, CDCl.sub.3) 7.41-7.16 (m, 8H), 6.74 (d, 1H, J=Hz), 4.64 (s, 2H), 3.81 (s, 3H), 2.43 (bs, 1H); .sup.13C NMR (300 MHz, CDCl.sub.3) 158.0, 151.8, 150.4, 138.4, 129.4, 129.1, 125.8, 124.3, 121.6, 110.2, 101.6, 61.5, 55.3; MS (Q MS APCI+) 256.1 (MOH.sup.); HRMS (TOF MS AP+) calcd for C.sub.15H.sub.14NO.sub.3 (MOH.sup.) 256.0974, found 256.0967.
(82) Preparation of Oligomer 5. Compound 8 (0.60 g, 2.2 mmol, 1.0 equiv) was added in one portion to stirring dimethylsulfoxide (2.2 mL) at 110 C. Dibutyltin dilaurate (0.26 mL, 0.44 mmol, 0.2 equiv) was added in one portion and the reaction mixture was stirred for 2.75 min at 110 C. 4-(Hydroxymethyl)-3-methoxyphenylboronic acid pinacol ester (2.0 g, 7.6 mmol, 3.5 equiv) was added in one portion and the reaction mixture was stirred for 2 h at 110 C. The reaction mixture was cooled to 23 C. and poured into 0 C. methanol (20 mL). A yellow precipitate formed that was washed using a solid phase washing vessel by adding methanol, bubbling N.sub.2 through the solution at a vigorous rate for 15 min, then draining the solvent. This process was repeated three times. The solids were dried under vacuum for 12 h to give oligomer 9 as an off-white powder (0.17 g, 0.15 mmol, 33%); .sup.1H NMR (360 MHz, SO(CH.sub.3).sub.2) 9.90 (bs, 1H), 9.80 (bs, 3H), 9.65 (bs, 1H), 7.29-7.19 (m, 12H), 7.00-6.98 (m, 6H), 5.15 (s, 2H), 5.04 (s, 8H), 4.84 (bs, 1H), 4.39 (s, 2H), 3.84-3.70 (m, 18H), 1.29 (s, 12H). GPC M.sub.n=1.2 kDa, M.sub.w=1.7 kDa, PDI=1.44.
(83) Triethylamine (0.12 mL, 0.86 mmol, 10 equiv) was added dropwise to a solution of oligomer 9 (0.10 g, 86 mol, 1.0 equiv) and 4-nitrophenyl isocyanate (71 mg, 0.43 mmol, 5.0 equiv) in dimethylformamide (1.7 mL). The reaction mixture was stirred for 16 h at 23 C., after which the solvent was removed by rotary evaporation. The residue was washed using a solid phase washing vessel with methanol (3) followed by acetonitrile (2). The solids were dried under vacuum for 12 h to give oligomer 5 as a peach-colored powder (0.81 g, 61 mol, 71%); .sup.1H NMR (360 MHz, SO(CH.sub.3).sub.2) 10.45 (bs, 1H), 9.90 (bs, 1H), 9.80 (bs, 4H), 8.19 (d, 2H, J=9.3 Hz), 7.68 (d, 2H, J=9.1 Hz), 7.40-7.21 (m, 12H), 6.99 (d, 6H, J=8.3 Hz), 5.15 (s, 2H), 5.09-5.03 (m, 10H), 3.83-3.75 (m, 18H), 1.29 (s, 12H). GPC M.sub.n=1.4 kDa, M.sub.w=1.7 kDa, PDI=1.3.
(84) Preparation of Oligomer 6. Compound 8 (0.60 g, 2.2 mmol, 1.0 equiv) was added in one portion to stirring dimethylsulfoxide (2.2 mL) at 110 C. Dibutyltin dilaurate (0.26 mL, 0.44 mmol, 0.2 equiv) was added in one portion and the reaction mixture was stirred for 5.0 min at 110 C. 4-(Hydroxymethyl)-3-methoxyphenylboronic acid pinacol ester (2.0 g, 7.6 mmol, 3.5 equiv) was added in one portion and the reaction mixture was stirred for 2 h at 110 C. The reaction mixture was cooled to 23 C. and poured into 0 C. methanol (20 mL). A yellow precipitate formed that was washed using a solid phase washing vessel with methanol (3). The solids were dried under vacuum for 12 h to give oligomer 10 as a light yellow powder (0.30 g, 0.18 mmol, 64%); .sup.1H NMR (400 MHz, SO(CH.sub.3).sub.2) 9.89 (bs, 1H) 9.78 (bs, 6H), 9.63 (bs, 1H), 7.41-7.19 (m, 18H), 7.03-6.95 (m, 9H), 5.16 (s, 2H), 5.04 (s, 14H), 4.82 (t, 1H, J=5.6 Hz), 4.40 (d, 2H, J=5.7 Hz), 3.94-3.67 (m, 27H), 1.30 (s, 12H). GPC M.sub.n=1.3 kDa, M.sub.w=2.3 kDa, PDI=1.73.
(85) Triethylamine (0.16 mL, 1.2 mmol, 10 equiv) was added dropwise to a solution of oligomer 10 (0.20 g, 0.12 mmol, 1.0 equiv) and 4-nitrophenyl isocyanate (97 mg, 0.59 mmol, 5.0 equiv) in dimethylformamide (2.4 mL). The reaction mixture was stirred for 16 h at 23 C., after which the solvent was removed by rotary evaporation. The residue was washed using a solid phase washing vessel with methanol (3) followed by acetonitrile (2). The solids were dried under vacuum for 12 h to give oligomer 6 as a peach-colored powder (0.19 g, 0.11 mmol, 92%); .sup.1H NMR (360 MHz, SO(CH.sub.3).sub.2) 10.46 (bs, 1H), 9.91 (bs, 1H) 9.80 (bs, 6H), 8.20 (d, 2H, J=9.1 Hz), 7.69 (d, 2H, J=9.2 Hz), 7.38-7.22 (m, 18H), 7.01-6.99 (m, 9H), 5.16 (s, 2H), 5.09-5.04 (m, 16H), 3.85-3.76 (m, 27H), 1.30 (s, 12H). GPC M.sub.n=1.7 kDa, M.sub.w=1.9 kDa, PDI=1.2.
(86) Procedure for fabricating the paper-based microfluidic device. The paper was patterned using a wax printer. The wax was melted into the paper by placing the patterned paper in an oven at 150 C. for 105 s. The devices were assembled; the layout of the device is shown in
(87) Procedure for measuring flow-through. The time required for a sample to flow through the device in
(88) Measuring the depolymerization kinetics were done as follows; p-Dioxanes (250 L), dimethylsulfoxide (190 L), and phosphate buffered water (40 L, 0.01 M, pH 7.1) were added to a 2 mL vial and mixed by swirling the solution. A solution containing the oligomer (10 L from a 0.01 M solution in DMSO) was added to the vial and vortexed for 5 s. Hydrogen peroxide (10 L from a 0.2 M solution in phosphate buffered water, 0.01 M, pH 7.1) was added and the combined solution was aspirated using a pipet. The solution was transferred to a quartz cuvette (500 L, 0.1 cm path length) and the absorbance value at 385 nm was monitored continuously. Half-lives were calculated based on the relative quantity of released p-nitroaniline.
Example 3. Multiplexed Assays for Quantitative Assessment of Active Enzymes
(89) Quantitative assays for active enzymes can be conducted by measuring the time required for a reference region on a paper-based microfluidic device to turn green relative to an assay region. The intensity of the green color is not indicative of the quantity of the analyte; rather, the quantity of the analyte is directly related to the relative time required for the green color to appear. The assay is capable of measuring enzyme analytes in the picomolar range with assay times that range from 30 s to 12 min. The reference region in the device accounts for the effects of temperature, humidity, and sample viscosity on distribution rates within the device, and the assay provides quantitative results independent of the volume of the analyte (so long as a minimum volume is applied to the assay platform; e.g., 30 L). The assay platform also includes preprocessing steps to remove contaminants that may be present in a sample that could interfere with the quantitative assay. Moreover, the platform can be configured to conduct multiple quantitative assays simultaneously while requiring that a user add a drop of a test fluid to the device, then measure the time between when the reference region and the assay region turn green.
(90)
(91) This device has an entry point for addition of the sample, and hydrophilic channels of paper that split the sample into two equal directions (
(92) The reference channel (right direction in layer 4 in the cross-section in
(93) ##STR00011##
(94) The performance of the assay is demonstrated by the calibration curves shown in
(95) The calibration curves for
(96) If the substrate in the device is switched to detect an enzyme other than alkaline phosphatase, then the selectivity switches as well (
(97) The device includes bead-bound glucose oxidase and bead-bound catalase to scavenge glucose and hydrogen peroxide that may be in a sample. The scavenging reagents are placed in the device in layers 2 and 3 (before the sample reaches the t-junction in the cross-section in
(98) The assay can provide quantitative results without requiring precise measurements of sample volume. The hydrophilic paper absorbs a fixed volume of sample, which provides sufficient control over sample volume to allow quantitative assays, so long as a minimum quantity of sample is added to the device. The minimum volume for the device shown in
(99)
Example 4. Multiplexed Assays for Quantitative Assessment of Heavy Metal Contaminants
(100) Materials. All reagents were purchased commercially and were used as received unless otherwise noted. All DNA sequences were purchased from Integrated DNA technologies in IDTE buffer (pH 7.5). Deionized water was purified by filtration and irradiation with UV light. The papers used were Whatman Chromatography Paper Grade 1 and Boise Aspen 30 Printer Paper (92 brilliant, 30% postconsumer content), and the adhesive used was 3M Super 77 Multipurpose Adhesive. The laminate was Protac Ultra UV (8.0 mil) with a Diytac JetMounter JM26 laminator. Devices and laminate were cut using an Epilog mini 24 CO.sub.2 laser.
(101) Sequence of DNA Strands. Sequence id DNA Strands are listed below:
(102) TABLE-US-00002 AdenosineAssay1 AdenosineA: (SEQIDNO:1) 5-biotin-AAAAAAAAAAAACCCAGGTTCTCT-3 AdenosineB: (SEQIDNO:2) 5-TCACAGGTAAGTAAAAAAAAAAAA-biotin-3 AdenosineC: (SEQIDNO:3) 5-TTTTTTACTCATCTGTGAAGAGAACCTGGGGGAGTATTGCGGAG GAAGGT-3 LeadAssay.sup.2 LeadA: (SEQIDNO:4) 5-biotin-AAAAAAAAAAAAACAGACATCTCTTCTCCGAGCCGGT CGAAATAGGTGTAG-3 LeadB: (SEQIDNO:5) 5-biotin-AAAAAAAAAAAATGTCCGATGCTACACTATrAGGAAG AGATGTCTGT-3 MercuryAssay.sup.3 MercuryA: (SEQIDNO:6) 5-TCTCAACTCGTAAAAAAAAAAAAA-biotin-3 MercuryB: (SEQIDNO:7) 5-biotin-AAAAAAAAAAAACGCATTCAGGAT-3 Reagentd: (SEQIDNO:8) 5-TTCGTGTTGTTCCTGTTTGCG-3
(103) Adenosine aptamer beads: To 500 L, of Adenosine B (25 M) was added 250 L, of Sphero streptavidin magnetic particles (1% w/v) (Spherotech, Lake Forest, Ill.) and 250 L, of buffer. The suspension was mixed for 24 h in the dark at room temperature and then collected by magnetic separation. The beads were washed three times using buffer and redissolved in 500 L, of buffer to give a 0.5% (w/v) working solution. The formed DNA sequence is referred to as Bead-Adenosine B.
(104) Assay: To 200 L, of Adenosine A (12.5 M) was added 25 L, of streptavidin glucose oxidase (1 mg/ml) (Rockland Immunochemicals Inc., Gilbertsville, Pa.) and 575 L, of 200 mM phosphate buffer (pH 7.5). The solution was mixed at room temperature for 24 h in the dark and then collected using a Pall Nanosep 100K omega centrifugal filter. The sample was washed three times with buffer and then redissolved in 300 L, of buffer to give a working solution. The formed DNA sequence is referred to as GOX-Adenosine A. To 200 L, of Bead-Adenosine B was added 100 L, of GOX-Adenosine A and 100 L, of Adenosine C. The solution was mixed at room temperature in the dark for 90 min and then collected by magnetic separation. The suspension was washed three times with 40 mM HEPES buffer (pH 8.0) and redissolved in HEPES buffer. The final volume of buffer used was varied to change the concentration of adenosine aptamer solution added to the device.
(105) Control: To 100 L, of Adenosine A (12.5 M) was added 625 L, of streptavidin (2 M). The solution was mixed at room temperature for 24 h in the dark and then collected using a Pall Nanosep 10K omega centrifugal filter. The sample was washed three times with buffer and redissolved in 300 L, of buffer to give a working solution. The formed DNA sequence is referred to as Strep-Adenosine A. To 200 L, of Bead-Adenosine B was added 100 L, of Strep-Adenosine A and 100 L, of Adenosine C. The solution was mixed at room temperature in the dark for 90 min and collected by magnetic separation. The suspension was washed three times with 40 mM HEPES buffer (pH 8.0) and redissolved in HEPES buffer. The final volume of buffer used was varied to change the concentration of adenosine aptamer solution added to the device.
(106) Lead aptamer beads: To 500 L of Lead A (25 M) was added 250 L of Sphero streptavidin magnetic particles (1% w/v) (Spherotech, Lake Forest, Ill.) and 250 L of buffer. The suspension was mixed for 24 h in the dark at room temperature and collected by magnetic separation. The beads were washed three times using buffer and redissolved in 500 L of buffer to give a 0.5% (w/v) working solution. The formed DNA sequence is referred to as Bead-Lead A.
(107) Reagent 1: To 200 L of Lead B (12.5 M) was added 25 L of streptavidin glucose oxidase (1 mg/ml) (Rockland Immunochemicals Inc., Gilbertsville, Pa.) and 575 L of 200 mM phosphate buffer (pH 7.5). The solution was mixed at room temperature for 24 h in the dark and collected using a Pall Nanosep 100K omega centrifugal filter. The sample was washed three times with buffer and redissolved in 300 L of buffer to give a working solution. The formed DNA sequence is referred to as GOX-Lead B. To 300 L of Bead-Lead A was added 300 L of GOX-Lead B. The solution was mixed at room temperature in the dark for 90 min and collected by magnetic separation. The suspension was washed three times with 40 mM HEPES buffer (pH 8.0) and redissolved in 300 L of HEPES buffer to give a 0.5% (w/v) working solution.
(108) Reagent 2: To 200 L of Lead B (12.5 M) was added 625 L of streptavidin (2 M). The solution was mixed at room temperature for 24 h in the dark and collected using a Pall Nanosep 10K omega centrifugal filter. The sample was washed three times with buffer and redissolved in 300 L of buffer to give a working solution. The formed DNA sequence is referred to as Strep-Lead B. To 300 L of Bead-Lead A was added 300 L of Strep-Lead B. The solution was mixed at room temperature in the dark for 90 min and collected by magnetic separation. The suspension was washed three times with 40 mM HEPES buffer (pH 8.0) and redissolved in 300 L of HEPES buffer to give a 0.5% (w/v) working solution.
(109) Mercury Aptamer: Reagent c: To 500 L of Mercury A (25 M) was added 250 L of Sphero streptavidin magnetic particles (1% w/v) (Spherotech, Lake Forest, Ill.) and 250 L of buffer. The suspension was mixed for 24 h in the dark at room temperature and collected by magnetic separation. The beads were washed three times using buffer and the supernatant was removed and the beads were stored for use later. The formed DNA sequence is referred to as Reagent c.
(110) Reagent 3: To 200 L, of Mercury B (12.5 M) was added 25 L, of streptavidin glucose oxidase (1 mg/ml) (Rockland Immunochemicals Inc., Gilbertsville, Pa.) and 575 L, of 200 mM phosphate buffer (pH 7.5). The solution was mixed at room temperature for 24 h in the dark and collected using a Pall Nanosep 100K omega centrifugal filter. The sample was washed three times with buffer and redissolved in 300 L, buffer to give a working solution. The formed DNA sequence is referred to as Reagent b. To the solid Reagent c was added 300 L, of Reagent b, and the solution was split into two 150 L, aliquots. To one aliquot was added 100 L, of Reagent d and 750 L, of 40 mM HEPES buffer (pH 8.0) to give a 0.1% (w/v) working solution.
(111) Reagent 4: To the second aliquot of Reagent c and reagent e was added 850 L, of 40 mM HEPES buffer (pH 8.0) to give a 0.1% (w/v) working solution.
(112) Device for Assays of a Single Analyte. Assay devices for lead(II) or mercury(II) were assembled according to the procedure in Example 3. The layout of the device is shown in
(113) The devices were assembled as sheets (20 cm20 cm) by aligning the edges of each layer on top of each other and using 3M Super 77 Multipurpose Adhesive to adhere individual layers together. The sheets of devices were then pressed using a Drytac JetMounter JM 26 laminator with medium pressure. Using a CO.sub.2 laser (Epilog Mini 24 Laser), individual devices were cut out with tabs left between devices to allow for processing of the devices as a sheet. In a sheet of Protac Ultra UV (8.0 mil) (22 cm22 cm), holes (d=5 mm) were cut using the CO.sub.2 laser to align with individual devices in the sheet of devices. The devices were laminated between two sheets of 22 cm22 cm Protac Ultra UV (the cut sheet covering layer 1) using a Drytac JetMounter JM 26 with medium pressure. Following lamination, individual devices were cut out using scissors.
(114) The devices contained two channels (one channel leading to a start region and the other to a stop region). The device was used along with aptamers for adenosine to demonstrate that the configuration of the device and the use of aptamers provided quantitative assays based on measurements of time (
(115) Immobilization of Enzymes on Polystyrene Beads. Catalase: To 1 mL of catalase (20 mg/mL) in 100 mM phosphate-buffered saline (pH 7.4) was added 5 mg biotin-X-NHS (EMD Chemicals, San Diego, Calif.) and mixed at room temperature for 4 hours to form biotin-catalase (b-catalase). The b-catalase was purified three times using PD-10 prepacked desalting column (GE Healthcare, Buckinghamshire, UK), washing with 100 mM phosphate-buffered saline (pH 7.4) and then concentrating by lyophilization. To 4 mg of b-catalase was added 1 mL of 9 m-diameter Sphero streptavidin magnetic particles (1% w/v) (Spherotech, Lake Forest, Ill.) and the resulting solution was mixed for 3 hours. The streptavidin beads were washed four times with HEPES buffer (40 mM, pH 8.0), concentrating by centrifugation between washes and then concentrated by lyophilization. The lyophilized powder was dissolved in 2 mL of HEPES buffer to give an immobilized catalase working solution (0.25% w/v).
(116) Glucose Oxidase: To 4 mg of biotin-glucose oxidase (b-GOx) (Rockland Immunochemicals Inc., Gilbertsville, Pa.) was added 1 mL of 9 m-diameter Sphero streptavidin magnetic particles (1% w/v) (Spherotech, Lake Forest, Ill.) and the resulting solution was mixed for 3 hours. The streptavidin beads were washed four times with HEPES buffer (40 mM, pH 8.0), concentrating by centrifugation between washes and then concentrated by lyophilization. The lyophilized powder was dissolved in 2 mL of HEPES buffer to give an immobilized glucose oxidase working solution (0.25% w/v).
(117) Procedure for Performing Assays for Single Analyte. The assay time was measured as follows: to layer 1 was added 60 L of sample. When the start region turned green, a timer was started. The assay time was recorded when the stop region turned red. Six replicate tests were performed for each sample and both the highest and lowest assay times were removed from the data set to account for errors arising from failures during the device fabrication process.
(118) Data for the Assay for Adenosine
(119) Table 2 shows assay times for detecting adenosine in a single channel assay device containing 0.00625% (w/v) beads containing adenosine aptamer in layer 5. There were 6 replicates for each concentration of adenosine. To account for errors in fabricating the devices, the fastest and slowest assay times were not used in determining the average or standard deviation values.
(120) TABLE-US-00003 TABLE 2 Standard Adenosine Trial 1 Trial 2 Trial 3 Trial 4 Trial 5 Trial 6 Average Deviation (nM) (s) (s) (s) (s) (s) (s) (s) (s) 0 1 7 10 20 21 28 14.5 7.1 10 6 7 12 27 27 142 18.3 10.3 25 8 10 26 26 33 42 23.8 9.7 50 48 52 68 73 113 256 76.5 25.9 100 27 141 203 204 215 190.8 33.6 250 306 315 315 322 324 333 319.0 4.7 500 521 545 583 596 631 656 588.8 35.5 1000 1225 1345 1375 1382 1391 1404 1373.3 19.9
(121) Table 3 shows assay times for detecting adenosine in a single channel assay device containing 0.05% (w/v) beads containing adenosine aptamer in layer 5. There were 6 replicates for each concentration of adenosine. To account for errors in fabricating the devices, the fastest and slowest assay times were not used in determining the average or standard deviation values.
(122) TABLE-US-00004 TABLE 3 Standard Adenosine Trial 1 Trial 2 Trial 3 Trial 4 Trial 5 Trial 6 Average Deviation (nM) (s) (s) (s) (s) (s) (s) (s) (s) 0 1 1 5 22 39 2700 16.8 17.4 10 4 7 8 16 33 82 16.0 12.0 50 114 132 152 152 172 180 152.0 16.3 100 68 274 287 294 298 301 288.3 10.5 500 55 442 454 485 488 521 467.3 22.8 1000 11 665 881 889 925 1067 842.5 119.7
(123) Table 4 shows assay times for detecting adenosine in a single channel assay device containing 0.083% (w/v) beads containing adenosine aptamer in layer 5. There were 6 replicates for each concentration of adenosine. To account for errors in fabricating the devices, the fastest and slowest assay times were not used in determining the average or standard deviation values.
(124) TABLE-US-00005 TABLE 4 Standard Adenosine Trial 1 Trial 2 Trial 3 Trial 4 Trial 5 Trial 6 Average Deviation (nM) (s) (s) (s) (s) (s) (s) (s) (s) 0 6 11 12 12 21 33 14.0 4.7 1 1 2 2 10 16 20 7.5 6.8 5 18 22 25 32 41 52 30.0 8.4 10 8 32 42 47 67 74 47.0 14.7 50 61 67 88 109 110 138 93.5 20.4 100 265 289 296 304 344 381 3083 24.6 1000 892 906 911 914 915 911.5 4.0
(125) Table 5 shows assay times for detecting adenosine in a single channel assay device containing 0.25% (w/v) beads containing adenosine aptamer in layer 5. There were 6 replicates for each concentration of adenosine. To account for errors in fabricating the devices, the fastest and slowest assay times were not used in determining the average or standard deviation values.
(126) TABLE-US-00006 TABLE 5 Standard Adenosine Trial 1 Trial 2 Trial 3 Trial 4 Trial 5 Trial 6 Average Deviation (nM) (s) (s) (s) (s) (s) (s) (s) (s) 0 1 2 4 7 14 21 6.8 5.3 50 1 1 10 13 15 23 9.8 6.2 100 13 15 28 28 33 40 26.0 7.7 500 10 68 79 84 90 236 80.3 9.3 1000 126 132 142 143 149 158 141.5 7.0 10000 113 170 181 197 202 405 187.5 14.7 100000 28 326 431 452 524 433.3 81.8
(127) Table 6 shows assay times for detecting adenosine in a single channel assay device containing 0.5% (w/v) beads containing adenosine aptamer in layer 5. There were 6 replicates for each concentration of adenosine. To account for errors in fabricating the devices, the fastest and slowest assay times were not used in determining the average or standard deviation values.
(128) TABLE-US-00007 TABLE 6 Standard Adenosine Trial 1 Trial 2 Trial 3 Trial 4 Trial 5 Trial 6 Average Deviation (nM) (s) (s) (s) (s) (s) (s) (s) (s) 0 2 2 3 10 25 630 10.0 10.6 5 2 5 12 13 15 39 11.3 4.3 10 4 10 20 50 54 58 33.5 21.8 50 12 24 55 55 59 48.3 16.3 100 62 90 101 109 123 132 105.8 13.9 500 100 136 151 163 177 156.8 17.4 1000 275 370 433 437 438 670 419.5 33.1 5000 22 450 462 463 464 459.8 6.6 10000 788 789 794 814 822 824 804.8 15.8
(129) Table 7 shows assay times for detecting adenosine in a single channel assay device containing 1.0% (w/v) beads containing adenosine aptamer in layer 5. There were 6 replicates for each concentration of adenosine. To account for errors in fabricating the devices, the fastest and slowest assay times were not used in determining the average or standard deviation values.
(130) TABLE-US-00008 TABLE 7 Standard Adenosine Trial 1 Trial 2 Trial 3 Trial 4 Trial 5 Trial 6 Average Deviation (nM) (s) (s) (s) (s) (s) (s) (s) (s) 0 9 11 11 13 14 21 12.3 1.5 1 1 2 3 21 22 26 12.0 11.0 5 11 12 45 48 52 89 39.3 18.4 10 77 86 87 116 138 138 106.8 25.1 50 127 150 151 160 172 173 158.3 10.2 100 118 182 218 244 292 306 234.0 46.3 500 539 564 575 602 603 608 586.0 19.6 1000 854 874 889 908 942 993 903.3 29.3
Effect of the Quantity of the Aptamer on the Limit-of-Detection of the Assay
(131) Table 8 shows the change in limit of detection with mass of aptamer-beads added to devices for detecting adenosine.
(132) TABLE-US-00009 TABLE 8 Aptamer-Beads (g) LOD (nM) 0.1875 15892.5 1.5 11977.0 2.49 5071.9 7.5 116.0 15 14.7 30 5.1
(133) Samples containing 100 nM adenosine that were spiked with either glucose or hydrogen peroxide were added to the device for performing assays of a single analyte (
(134) Effects of Preprocessing
(135) No preprocessing; Table 9 shows assay times for detecting 100 nM adenosine spiked with glucose in a single channel assay device containing 0.5% (w/v) beads containing adenosine aptamer in layer 5. No immobilized glucose oxidase or catalase was present in layer 2. There were 6 replicates for each concentration of glucose. To account for errors in fabricating the devices, the fastest and slowest assay times were not used in determining the average or standard deviation values.
(136) TABLE-US-00010 TABLE 9 Standard Glucose Trial 1 Trial 2 Trial 3 Trial 4 Trial 5 Trial 6 Average Deviation (mM) (s) (s) (s) (s) (s) (s) (s) (s) 0 109 234 247 256 257 290 248.5 10.7 10 8 141 164 192 192 172.3 24.7 25 8 62 91 96 97 86.5 16.5 50 3 19 23 34 71 220 36.8 23.7
(137) No preprocessing; Table 10 shows assay times for detecting 100 nM adenosine spiked with hydrogen peroxide in a single channel assay device containing 0.5% (w/v) beads containing adenosine aptamer in layer 5. No immobilized glucose oxidase or catalase was present in layer 2. There were 6 replicates for each concentration of hydrogen peroxide. To account for errors in fabricating the devices, the fastest and slowest assay times were not used in determining the average or standard deviation values.
(138) TABLE-US-00011 TABLE 10 Hydrogen Standard Peroxide Trial 1 Trial 2 Trial 3 Trial 4 Trial 5 Trial 6 Average Deviation (mM) (s) (s) (s) (s) (s) (s) (s) (s) 0 109 234 247 256 257 290 248.5 10.7 0.5 1 2 7 8 11 16 7.0 3.7 10 2 13 36 38 43 64 32.5 13.3 25 1 1 2 3 10 24 4.0 4.1 50 5 6 26 32 32 44 24.0 12.3
(139) With preprocessing; Table 11 shows assay times for detecting 100 nM adenosine spiked with glucose in a single channel assay device containing 0.5% (w/v) beads containing adenosine aptamer in layer 5. Immobilized glucose oxidase or catalase was present in layer 2. There were 6 replicates for each concentration of glucose. To account for errors in fabricating the devices, the fastest and slowest assay times were not used in determining the average or standard deviation values.
(140) TABLE-US-00012 TABLE 11 Standard Glucose Trial 1 Trial 2 Trial 3 Trial 4 Trial 5 Trial 6 Average Deviation (mM) (s) (s) (s) (s) (s) (s) (s) (s) 0 203 209 247 249 260 275 241.3 22.2 10 12 251 265 268 282 266.5 12.7 25 112 198 205 212 238 258 213.3 17.5 50 68 285 223 242 270 230 35.7
(141) With preprocessing; Table 12 shows assay times for detecting 100 nM adenosine spiked with hydrogen peroxide in a single channel assay device containing 0.5% (w/v) beads containing adenosine aptamer in layer 5. Immobilized glucose oxidase or catalase was present in layer 2. There were 6 replicates for each concentration of hydrogen peroxide. To account for errors in fabricating the devices, the fastest and slowest assay times were not used in determining the average or standard deviation values.
(142) TABLE-US-00013 TABLE 12 Hydrogen Standard Peroxide Trial 1 Trial 2 Trial 3 Trial 4 Trial 5 Trial 6 Average Deviation (mM) (s) (s) (s) (s) (s) (s) (s) (s) 0 203 209 247 249 260 275 241.3 22.2 0.5 172 243 260 268 292 297 265.8 20.4 10 205 211 230 237 250 308 232.0 16.3 25 204 222 232 235 285 293 243.5 28.2 50 231 235 242 242 270 288 247.3 15.5
Assay for Pb.sup.2+
(143) Table 13 shows assay times for detecting lead(II) in a single channel assay device containing 0.5% (w/v) reagents 1 and 2 in layer 5. There were 6 replicates for each concentration of lead. To account for errors in fabricating the devices, the fastest and slowest assay times were not used in determining the average or standard deviation values.
(144) TABLE-US-00014 TABLE 13 Standard Lead (II) Trial 1 Trial 2 Trial 3 Trial 4 Trial 5 Trial 6 Average Deviation (mM) (s) (s) (s) (s) (s) (s) (s) (s) 0 18 20 24 32 63 102 34.8 19.5 1 15 22 28 29 30 37 27.3 3.6 5 1 43 47 54 60 60 51.0 7.5 10 24 69 75 88 94 187 81.5 27.6 25 84 100 126 134 167 248 131.8 27.6 50 29 120 128 140 142 145 132.5 10.4 100 189 203 210 211 217 331 210.3 5.7 500 300 336 341 343 345 390 341.3 3.9 1000 40 300 357 377 395 439 357.3 41.2 100000 668 675 679 757 772 781 720.75 50.9
Assay for Hg.sup.2+
(145) Table 14 shows assay times for detecting mercury(II) in a single channel assay device containing 0.1% (w/v) reagents 3 and 4 in layer 5. There were 6 replicates for each concentration of mercury. To account for errors in fabricating the devices, the fastest and slowest assay times were not used in determining the average or standard deviation values.
(146) TABLE-US-00015 TABLE 14 Mercury Standard (II) Trial 1 Trial 2 Trial 3 Trial 4 Trial 5 Trial 6 Average Deviation (mM) (s) (s) (s) (s) (s) (s) (s) (s) 0 1 12 18 23 50 70 25.8 16.8 1 13 16 50 72 96 519 58.5 34.0 5 89 109 132 159 163 184 140.8 25.3 10 226 232 245 262 270 252.3 17.1 25 114 297 328 332 335 345 323.0 17.6 50 114 393 417 432 434 610 419.0 18.9 100 442 524 585 593 618 619 580.0 39.9 10000 90 747 799 824 859 930 807.3 47.1
(147) Fabrication of the device for performing assays on multiple analytes simultaneously. Devices were assembled according to the procedure in Example 3; the layout is shown in
(148) The devices were assembled as sheets (20 cm20 cm) by aligning the edges of each layer on top of each other and using 3M Super 77 Multipurpose Adhesive to adhere individual layers together. The sheets of devices were then pressed using a Drytac JetMounter JM 26 laminator with medium pressure. Using a CO.sub.2 laser (Epilog Mini 24 Laser), individual devices were cut out with tabs left between devices to allow for processing of the devices as a sheet. In a sheet of Protac Ultra UV (8.0 mil) (22 cm22 cm), holes (d=5 mm) were cut using the CO.sub.2 laser to align with individual devices in the sheet of devices. The devices were laminated between two sheets of 22 cm22 cm Protac Ultra UV (the cut sheet covering layer 1) using a Drytac JetMounter JM 26 with medium pressure. Following lamination, individual devices were cut out using scissors.
(149) Procedure for performing assays on multiple analytes simultaneously. The assay time was measured as follows: to layer 1 was added 80 L of sample. When the start region turned green, a timer was started. The assay time was recorded when the stop region turned red. Each assay (mercury and lead) was timed separately so that two times are measured, one for each analyte quantified. Six replicate tests were performed for each sample and both the highest and lowest assay times were removed from the data set to account for errors arising from failures during the device fabrication process.
(150) Use of De-Ionized Water
(151) Table 15 shows assay times for detecting mercury(II) and lead(II) in a multiple channel assay device containing 0.1% (w/v) reagents 3 and 4, and 0.5% (w/v) reagents 1 and 2 in layer 5. Samples were made using deionized water. There were 5 replicates for each sample. To account for errors in fabricating the devices, the fastest and slowest assay times were not used in determining the average or standard deviation values.
(152) TABLE-US-00016 TABLE 15 Standard Trial 1 Trial Trial Trial Trial Average Deviation Heavy Metal(s) Assay (s) 2 (s) 3 (s) 4 (s) 5 (s) (s) (s) 0 nM Pb.sup.2+ and 0 nM Hg(II) 1 12 13 17 33 14.0 2.6 Hg.sup.2+ Pb(II) 2 6 9 34 45 16.3 15.4 100 nM Pb.sup.2+ and 0 nM Hg(II) 1 2 4 1 22 6.0 5.3 Hg.sup.2+ Pb(II) 189 203 220 243 244 222.0 20.1 0 nM Pb.sup.2+ and 100 nM Hg(II) 574 534 582 488 566 534.7 47.0 Hg.sup.2+ Pb(II) 1 2 21 23 30 15.3 11.6 100 nM Pb.sup.2+ and Hg(II) 504 506 541 557 580 534.7 26.1 100 nM Hg.sup.2+ Pb(II) 234 238 236 236 309 236.7 1.2 100 nM Pb.sup.2+, 100 nM Hg(II) 510 519 520 564 572 534.3 25.7 Hg.sup.2+, 100 nM Pb(II) 219 229 240 253 284 240.7 12.0 Cd.sup.2+ and 100 nM Zn.sup.2+
Use of Lake Water
(153) Samples were prepared with lake water from Tussey Lake (40 46 11.28 N, 77 45 29.88 W). The lake water was spiked with lead(II) to simulate contaminated drinking water.
(154) Table 16 shows assay times for detecting mercury(II) and lead(II) in a multiple channel assay device containing 0.1% (w/v) reagents 3 and 4, and 0.5% (w/v) reagents 1 and 2 in layer 5. Samples were made using lake water. There were 5 replicates for each sample. To account for errors in fabricating the devices, the fastest and slowest assay times were not used in determining the average or standard deviation values.
(155) TABLE-US-00017 TABLE 16 Standard Trial 1 Trial Trial Trial Trial Average Deviation Heavy Metal(s) Assay (s) 2 (s) 3 (s) 4 (s) 5 (s) (s) (s) O nM Pb.sup.2+ and 0 nM Hg(II) 1 8 9 10 22 9.0 1.0 Hg.sup.2+ Pb(II) 1 1 4 13 14 6.0 6.2 100 nM Pb2+ and Hg(II) 1 9 15 16 62 13.3 3.8 0 nM Hg.sup.2+ Pb(II) 233 241 245 246 248 244.0 2.6 10 nM Pb.sup.2+ and 0 nM Hg(II) 1 1 1 17 69 6.3 9.2 Hg.sup.2+ Pb(II) 70 80 81 83 83 81.3 1.5 1 nM Pb.sup.2+ and 0 nM Hg(II) 2 2 5 25 27 10.7 12.5 Hg.sup.2+ Pb(II) 11 30 32 52 58 38.0 12.2
(156) The disclosed assay for inorganic ions (e.g., Pb.sup.2+ and Hg.sup.2+) provides several advantages. The configuration uses aptamers and thus opens the assay strategy to new classes of analytes. The time-based approach can be used for quantitative analysis of enzymes, inorganic ions, and small molecules. The assays are easily reconfigured by exchanging reagents in the device both to alter the specificity for a target analyte, and to adjust the sensitivity and dynamic range of the assay(s). The strategy includes multiplexed assays, which allows complete analysis of samples using a single aliquot of the sample and a single step by the user. The assay is conveniently used, requiring that the user only add a sample onto the device. Pre-processing occurs within the device, and the device meters the volume of the sample to enable a quantitative readout. The assay platform includes reagents both for selective detection as well as signal amplification, yet no washing steps or other manipulations are required.
(157)
(158) The sample distributes to the start and stop regions through five layers of wax-patterned paper that are held together via laminate (
(159) The 5th layer is a lateral-flow region where the sample moves away from the central sample addition region to the outer columns of hydrophilic paper. In the four lateral-flow channels, the sample re-dissolves reagents for conducting the assays, where each of the four channels contains a different set of reagents (
(160) At the outer columns, the sample travels vertically towards the top of the paper-based device. As it passes through layers of paper, the sample encounters additional reagents that were pre-deposited and dried into the layers before the device was assembled. In layer 4, the sample re-dissolves glucose, which is processed by the liberated GOX to generate hydrogen peroxide. Layer 3 contains a hydrophobic poly(benzyl carbamate) oligomer 6 that reacts with hydrogen peroxide via the aryl boronate on one end of the oligomer to initiate a continuous head-to-tail depolymerization reaction (
(161) The Pb.sup.2+ assay also contains reagent 2 in the lateral-flow channel opposite to reagent 1. Reagent 2 is exactly the same as reagent 1, with the exception that GOX is replaced with streptavidin. Streptavidin will not generate hydrogen peroxide when it encounters glucose, therefore a sample containing Pb.sup.2+ will take longer to travel to the viewing region when it encounters reagent 2 than when it encounters reagent 1. This difference in sample transport time may be dependent on the concentration of Pb.sup.2+ in the sample, thus providing the basis for the time-based measurement and quantitative assay. Moreover, this type of measurement, based on relative sample transport time, normalizes the assays for effects of humidity and sample viscosity that would normally complicate a quantitative measurement.
(162) The Hg.sup.2+ assay occurs on the same device simultaneously with the Pb.sup.2+ assay, but requires a different set of reagents in layer 5 than the Pb.sup.2+ assay (e.g., reagents 3 and 4,
(163) Reagent 3 in the opposite lateral-flow region to reagent 4 contains only polynucleotides b and c, and thus is incapable of forming the four-component complex in the presence of Hg.sup.2+. In this channel, all of the GOX is capable of generating hydrogen peroxide in layer 4. Hence, the sample travels faster through the region containing reagent 3 than reagent 4, thus reagent 3 leads to the start region and reagent 4 to the stop region.
(164) Using a device that contains only two channels rather than four (e.g., one channel leading to a start region and the other to a stop region;
(165) Based on these results in two-channel devices, the four-channel design was implemented for ion analysis in drinking water, as depicted in
(166) Furthermore, the assay platform provides consistent, quantitative measurements even when lake water is used rather than de-ionized water (DI). For example, this observation is shown in