PRODUCTS AND COMPOSITIONS
20230089502 · 2023-03-23
Inventors
Cpc classification
A61K45/06
HUMAN NECESSITIES
C12N15/113
CHEMISTRY; METALLURGY
C07K14/00
CHEMISTRY; METALLURGY
C12Y304/21061
CHEMISTRY; METALLURGY
International classification
C12N15/113
CHEMISTRY; METALLURGY
A61P7/02
HUMAN NECESSITIES
C07K14/00
CHEMISTRY; METALLURGY
Abstract
Nucleic acid products are provided that modulate, interfere with or inhibit PCSK9 gene expression. The products include compounds that comprise at least a first region of linked nucleosides having at least a first nucleobase sequence that is at least partially complementary to at least a portion of RNA transcribed from a PCSK9 gene, wherein the first nucleobase sequence is selected from the following sequences, or a portion thereof: SEQ ID NOs 1 to 250 or 501 to 543.
Claims
1. An oligomeric compound capable of inhibiting expression of PCSK9, wherein said compound comprises at least a first region of linked nucleosides having at least a first nucleobase sequence that is at least partially complementary to at least a portion of RNA transcribed from a PCSK9 gene, wherein said first nucleobase sequence is selected from the following sequences, or a portion thereof: sequences of (SEQ ID NOs 1 to 250), or sequences of (SEQ ID NOs 501 to 543), wherein said portion optionally has a length of at least 18 nucleotides.
2. The oligomeric compound according to claim 1, which further comprises at least a second region of linked nucleosides having at least a second nucleobase sequence that is at least partially complementary to said first nucleobase sequence and is selected from the following sequences, or a portion thereof: sequences of (SEQ ID NOs 251 to 500), or sequences of (SEQ ID NOs 544 to 586), wherein said portion optionally has a length of at least 11 nucleotides.
3. The oligomeric compound according to claim 1, wherein said first nucleobase sequence is selected from the following sequences, or a portion thereof: SEQ ID NOs 13, 31, 76, 127, 55, 29, 28, 53, 44, 49, 58, 94, 52, 57, 43, 36, 21, 35, 232, 87, 48, 139, 46, 233, 34, 100, and 77.
4. The oligomeric compound according to claim 3, wherein said second nucleobase sequence is selected from the following sequences, or a portion thereof: SEQ ID NOs 263, 281, 326, 377, 305, 279, 278, 303, 294, 299, 308, 344, 302, 307, 293, 286, 271, 285, 482, 337, 298, 389, 296, 483, 284, 350, and 327, and wherein said portion is advantageously 14 nucleosides long and lacks the 5′-terminal nucleobase as set forth in said SEQ ID NOs.
5. The oligomeric compound according claim 1, wherein said first nucleobase sequence is selected from the following sequences, or a portion thereof: SEQ ID NOs 29, 44, 46, 52, 53, 55, and 57.
6. The oligomeric compound according to claim 5, wherein said second nucleobase sequence is selected from the following sequences, or a portion thereof: SEQ ID NOs 279, 294, 296, 302, 303, 305, and 307, and wherein said portion is optionally 14 nucleosides long and lacks the 5′-terminal nucleobase as set forth in said SEQ ID NOs.
7. The oligomeric compound according to claim 1, wherein said first region of linked nucleosides consists essentially of 18 to 35, 18 to 20, 18 or 19, or 19 linked nucleosides.
8. The oligomeric compound according to claim 2, wherein said second region of linked nucleosides consists essentially of 11 to 35, 11 to 20, 13 to 16, 14 or 15, or 14 linked nucleosides.
9. The oligomeric compound according to claim 2, which comprises at least one complementary duplex region that comprises at least a portion of said first nucleoside region directly or indirectly linked to at least a portion of said second nucleoside region, wherein advantageously said duplex region has a length of 11 to 19, 14 to 19, 14 or 15, or 14 base pairs, wherein optionally there is one mismatch within said duplex region.
10. (canceled)
11. The oligomeric compound according to claim 9, wherein the 5′ region of said first nucleoside region is directly or indirectly linked to the 3′ region of said second nucleoside region, and/or wherein the 3′ region of said first nucleoside region is directly or indirectly linked to the 5′ region of said second nucleoside region, wherein optionally the 5′ terminal nucleoside of said first nucleoside region base pairs with the 3′ terminal nucleoside of said second nucleoside region.
12. The oligomeric compound according to claim 1, which further comprises one or more ligands, wherein said ligand optionally comprises at least one carbohydrate.
13-19. (canceled)
20. The oligomeric compound according to claim 12, wherein said ligand comprises one or more N-Acetyl-Galactosamine moieties.
21-24. (canceled)
25. The oligomeric compound according to claim 9, wherein said oligomeric compound comprises a single strand comprising said first and second nucleoside regions, wherein said single strand dimerises whereby at least a portion of said first nucleoside region is directly or indirectly linked to at least a portion of said second nucleoside region so as to form said at least partially complementary duplex region.
26-27. (canceled)
28. The oligomeric compound according to claim 25, having a nucleobase sequence selected from SEQ ID NOs: 587 to 590.
29. The oligomeric compound according to claim 1, which comprises at least one modified internucleoside linkage.
30-42. (canceled)
43. The oligomeric compound according to claim 1, wherein sugars of the nucleosides at any of positions 2 and 14 downstream from the first nucleoside of the 5′ region of the first nucleoside region, do not contain 2′-O-methyl modifications.
44. The oligomeric compound according to claim 2, wherein sugars of the nucleosides of the second nucleoside region, that correspond in position to any of the nucleosides of the first nucleoside region at any of positions 9 to 11 downstream from the first nucleotide of the 5′ region of the first nucleoside region, do not contain 2′-O-methyl modifications.
45-73. (canceled)
74. The oligomeric compound according to claim 1, wherein the first region of linked nucleotides is selected from the group consisting of Table 2b, Table 3b, Table 1a, and Table 5.
75. The oligomeric compound according to claim 74, wherein the second region of linked nucleotides is selected from the group consisting of Table 2d, Table 3d, Table 1b, and Table 5.
76. A pharmaceutical composition comprising an oligomeric compound according to claim 2, and a physiologically acceptable excipient.
77-81. (canceled)
82. The pharmaceutical composition of claim 76, further comprising a further oligomeric compound which is directed to a target different from PCSK9 and/or a lipid-lowering agent distinct from said oligomeric compound, wherein said lipid-lowering agent optionally is a statin or ezetimib.
83-86. (canceled)
87. A method of treating a disease or disorder comprising administration of an oligomeric compound according to claim 1, to an individual in need of treatment, wherein said disease or disorder is a PCSK9-associated disease or disorder, or a disease or disorder requiring reduction of low-density lipoprotein (LDL) cholesterol, wherein said disease or disorder optionally is selected from the group consisting of dyslipidemia, mixed dyslipidemia, hypercholesterolemia, heterozygous familial hypercholesterolemia, non-familial hypercholesterolemia, atherosclerosis, atherosclerotic cardiovascular disease (ASCVD), myocardial infarction, stroke and peripheral arterial disease.
88-89. (canceled)
Description
BRIEF DESCRIPTION OF THE DRAWINGS
[0014] PCSK9-targeting constructs are labelled as P, p, PCS or PCSK9, followed by a two- or three-digit construct number, wherein numbering adheres to the numbering of the nucleobase sequences shown in the sequence listing as follows: SEQ ID NO of the nucleobase sequence of the antisense region=construct number; SEQ ID NO of the nucleobase sequence of the sense region=250+ construct number. In certain instances, such designation of PCSK9-targeting constructs is followed by information in brackets about the architecture of the construct (dsRNA vs. mxRNA; lengths of regions).
[0015]
[0016]
[0017]
[0018]
[0019]
DETAILED DESCRIPTION AND EMBODIMENTS
[0020] The following aspects are non-limiting.
[0021] Aspect 1. An oligomeric compound capable of inhibiting expression of PCSK9, wherein this compound comprises at least a first region of linked nucleosides having at least a first nucleobase sequence that is at least partially complementary to at least a portion of RNA transcribed from a PCSK9 gene, wherein the first nucleobase sequence is selected from the following sequences, or a portion thereof: sequences of Table 2a (SEQ ID NOs 1 to 250), or sequences of Table 3a (SEQ ID NOs 501 to 543), wherein the portion advantageously has a length of at least 18 nucleotides.
[0022] Particularly advantageous embodiments relate to dsRNAs on the one hand and mxRNAs on the other hand; for further details see the embodiments and their discussion further below. In addition, the antisense and sense regions disclosed herein may serve as building blocks for compounds (muRNAs) which are directed to multiple targets. The general architecture of such compounds is described in WO 2020/065602.
[0023] Aspect 2. A composition comprising an oligomeric compound according to aspect 1, and a physiologically acceptable excipient.
[0024] Aspect 3. A pharmaceutical composition comprising an oligomeric compound according to aspect 1.
[0025] Aspect 4. An oligomeric compound according to aspect 1, for use in human or veterinary medicine or therapy.
[0026] Aspect 5. An oligomeric compound according to aspect 1, for use in a method of treating a disease or disorder.
[0027] Aspect 6. A method of treating a disease or disorder comprising administration of an oligomeric compound according to aspect 1, to an individual in need of treatment.
[0028] Aspect 7. Use of an oligomeric compound according to aspect 1, for use in research as a gene function analysis tool.
[0029] Further embodiments (items) are described below by way of example only. These examples represent ways in which the disclosed compositions and methods are put into practice but the skilled artisan will recognize that they are not the only ways in which this could be achieved. It will be understood that the benefits and advantages described herein may relate to one embodiment or may relate to several embodiments. The embodiments are not limited to those that solve any or all of the stated problems or those that have any or all of the stated benefits and advantages.
[0030] Features of different aspects and embodiments may be combined as appropriate, as would be apparent to a skilled person, and may be combined with any of the aspects as described herein.
Definitions
[0031] In many instances, the definitions, in addition to the respective definition as such, provide non-exhaustive listings of possible implementations which amount to specific embodiments. Unless specific definitions are provided, the nomenclature used in connection with, and the procedures and techniques of, analytical chemistry, synthetic organic chemistry, and medicinal and pharmaceutical chemistry described herein are those well known and commonly used in the art. Standard techniques may be used for chemical synthesis, and chemical analysis. Certain such techniques and procedures may be found for example in “Carbohydrate Modifications in Antisense Research” Edited by Sangvi and Cook, American Chemical Society, Washington D.C., 1994; “Remington's Pharmaceutical Sciences,” Mack Publishing Co., Easton, Pa., 21.sup.st edition, 2005; and “Antisense Drug Technology, Principles, Strategies, and Applications” Edited by Stanley T. Crooke, CRC Press, Boca Raton, Fla.; and Sambrook et al., “Molecular Cloning, A laboratory Manual,” 2.sup.nd Edition, Cold Spring Harbor Laboratory Press, 1989.
[0032] Unless otherwise indicated, the following terms have the following meanings: As used herein, “excipient” means any compound or mixture of compounds that is added to a composition as provided herein that is suitable for delivery of an oligomeric compound.
[0033] As used herein, “nucleoside” means a compound comprising a nucleobase moiety and a sugar moiety. Nucleosides include, but are not limited to, naturally occurring nucleosides (as found in DNA and RNA) and modified nucleosides. Nucleosides may be linked to a phosphate moiety, phosphate-linked nucleosides also being referred to as “nucleotides”.
[0034] As used herein, “chemical modification” or “chemically modified” means a chemical difference in a compound when compared to a naturally occurring counterpart. Chemical modifications of oligonucleotides include nucleoside modifications (including sugar moiety modifications and nucleobase modifications) and internucleoside linkage modifications. In reference to an oligonucleotide, chemical modification does not include differences only in nucleobase sequence.
[0035] As used herein, “furanosyl” means a structure comprising a 5-membered ring comprising four carbon atoms and one oxygen atom.
[0036] As used herein, “naturally occurring sugar moiety” means a ribofuranosyl as found in naturally occurring RNA or a deoxyribofuranosyl as found in naturally occurring DNA. A “naturally occurring sugar moiety” as referred to herein is also termed as an “unmodified sugar moiety”. In particular, such a “naturally occurring sugar moiety” or an “unmodified sugar moiety” as referred to herein has a —H (DNA sugar moiety) or —OH (RNA sugar moiety) at the 2′-position of the sugar moiety, especially a —H (DNA sugar moiety) at the 2′-position of the sugar moiety.
[0037] As used herein, “sugar moiety” means a naturally occurring sugar moiety or a modified sugar moiety of a nucleoside. As used herein, “modified sugar moiety” means a substituted sugar moiety or a sugar surrogate.
[0038] As used herein, “substituted sugar moiety” means a furanosyl that has been substituted. Substituted sugar moieties include, but are not limited to furanosyls comprising substituents at the 2′-position, the 3′-position, the 5′-position and/or the 4′-position. Certain substituted sugar moieties are bicyclic sugar moieties.
[0039] As used herein, “2′-substituted sugar moiety” means a furanosyl comprising a substituent at the 2′-position other than H or OH. Unless otherwise indicated, a 2′-substituted sugar moiety is not a bicyclic sugar moiety (i.e., the 2′-substituent of a 2′-substituted sugar moiety does not form a bridge to another atom of the furanosyl ring).
[0040] As used herein, “MOE” means —OCH.sub.2CH.sub.2OCH.sub.3.
[0041] As used herein, “2′-F nucleoside” refers to a nucleoside comprising a sugar comprising fluorine at the 2′ position. Unless otherwise indicated, the fluorine in a 2′-F nucleoside is in the ribo position (replacing the OH of a natural ribose). Duplexes of uniformly modified 2′-fluorinated (ribo) oligonucleotides hybridized to RNA strands are not RNase H substrates while the ara analogs retain RNase H activity.
[0042] As used herein the term “sugar surrogate” means a structure that does not comprise a furanosyl and that is capable of replacing the naturally occurring sugar moiety of a nucleoside, such that the resulting nucleoside sub-units are capable of linking together and/or linking to other nucleosides to form an oligomeric compound which is capable of hybridizing to a complementary oligomeric compound. Such structures include rings comprising a different number of atoms than furanosyl (e.g., 4, 6, or 7-membered rings); replacement of the oxygen of a furanosyl with a non-oxygen atom (e.g., carbon, sulfur, or nitrogen); or both a change in the number of atoms and a replacement of the oxygen. Such structures may also comprise substitutions corresponding to those described for substituted sugar moieties (e.g., 6-membered carbocyclic bicyclic sugar surrogates optionally comprising additional substituents). Sugar surrogates also include more complex sugar replacements (e.g., the non-ring systems of peptide nucleic acid). Sugar surrogates include without limitation morpholinos, cyclohexenyls and cyclohexitols.
[0043] As used herein, “bicyclic sugar moiety” means a modified sugar moiety comprising a 4 to 7 membered ring (including but not limited to a furanosyl) comprising a bridge connecting two atoms of the 4 to 7 membered ring to form a second ring, resulting in a bicyclic structure. In certain embodiments, the 4 to 7 membered ring is a sugar ring. In certain embodiments the 4 to 7 membered ring is a furanosyl. In certain such embodiments, the bridge connects the 2 ‘-carbon and the 4’-carbon of the furanosyl.
[0044] As used herein, “nucleotide” means a nucleoside further comprising a phosphate linking group. As used herein, “linked nucleosides” may or may not be linked by phosphate linkages and thus includes, but is not limited to “linked nucleotides.” As used herein, “linked nucleosides” are nucleosides that are connected in a continuous sequence (i.e. no additional nucleosides are present between those that are linked).
[0045] As used herein, “nucleobase” means a group of atoms that can be linked to a sugar moiety to create a nucleoside that is capable of incorporation into an oligonucleotide, and wherein the group of atoms is capable of bonding, more specifically hydrogen bonding, with a complementary naturally occurring nucleobase of another oligonucleotide or nucleic acid. Nucleobases may be naturally occurring or may be modified.
[0046] As used herein the terms, “unmodified nucleobase” or “naturally occurring nucleobase” means the naturally occurring heterocyclic nucleobases of RNA or DNA: the purine bases adenine (A) and guanine (G), and the pyrimidine bases thymine (T), cytosine (C) (including 5-methyl C), and uracil (U).
[0047] As used herein, “modified nucleobase” means any nucleobase that is not a naturally occurring nucleobase.
[0048] As used herein, “modified nucleoside” means a nucleoside comprising at least one chemical modification compared to naturally occurring RNA or DNA nucleosides. Modified nucleosides can comprise a modified sugar moiety and/or a modified nucleobase.
[0049] As used herein, “bicyclic nucleoside” or “BNA” means a nucleoside comprising a bicyclic sugar moiety.
[0050] As used herein, “locked nucleic acid nucleoside” or “LNA” means a nucleoside comprising a bicyclic sugar moiety comprising a 4′-CH.sub.2—O-2′bridge.
[0051] As used herein, “2 ‘-substituted nucleoside” means a nucleoside comprising a substituent at the 2’-position of the sugar moiety other than H or OH. Unless otherwise indicated, a 2 ‘-substituted nucleoside is not a bicyclic nucleoside.
[0052] As used herein, “deoxynucleoside” means a nucleoside comprising 2’—H furanosyl sugar moiety, as found in naturally occurring deoxyribonucleosides (DNA). In certain embodiments, a 2′-deoxynucleoside may comprise a modified nucleobase or may comprise an RNA nucleobase (e.g., uracil).
[0053] As used herein, “oligonucleotide” means a compound comprising a plurality of linked nucleosides. In certain embodiments, an oligonucleotide comprises one or more un-modified ribonucleosides (RNA) and/or unmodified deoxyribonucleosides (DNA) and/or one or more modified nucleosides.
[0054] As used herein, “modified oligonucleotide” means an oligonucleotide comprising at least one modified nucleoside and/or at least one modified internucleoside linkage.
[0055] Advantageous modified internucleoside linkages are those which confer increased stability as compared to the naturally occurring phosphodiesters. “Stability” refers in particular to stability against hydrolysis including enzyme-catalyzed hydrolysis, enzymes including exonucleases and endonucleases.
[0056] Advantageous positions for such modified internucleoside linkages include the termini and the hairpin loop of single-stranded oligomeric compounds as described herein. For example, the internucleoside linkages connecting first and second nucleoside and second and third nucleoside counting from the 5′ terminus, and/or the internucleoside linkages connecting first and second nucleoside and second and third nucleoside counting from the 3′ terminus are modified. In addition, a linkage connecting the terminal nucleoside of the 3′ terminus with a ligand, such as GaINAc, may be modified.
[0057] As discussed above, advantageous positions are in the hairpin loop of the single-stranded oligomeric compounds. In particular, all linkages, all but one linkages or the majority of linkages in the hairpin loop are modified. As used herein, “linkages in the hairpin loop” designates the linkages between nucleosides which are not engaged in base pairing. For example, in a hairpin loop consisting of five nucleosides, there are four linkages between nucleosides which are not engaged in base pairing. Advantageously, the term “linkages in the hairpin loop” also extends to the linkages connecting the stem to the loop, i.e., those linkages which connect a base-paired nucleoside to a non-based paired nucleoside. Generally, there are two such positions in hairpins and mxRNAs as described herein.
[0058] Most advantageous is that modified internucleoside linkages are at both termini and in the hairpin loop.
[0059] As used herein, “linkage” or “linking group” means a group of atoms that link together two or more other groups of atoms.
[0060] As used herein “internucleoside linkage” means a covalent linkage between adjacent nucleosides in an oligonucleotide.
[0061] As used herein “naturally occurring internucleoside linkage” means a 3′ to 5′ phosphodiester linkage. As used herein, “modified internucleoside linkage” means any internucleoside linkage other than a naturally occurring internucleoside linkage. In particular, a “modified internucleoside linkage” as referred to herein can include a modified phosphorous linking group such as a phosphorothioate or phosphorodithioate internucleoside linkage.
[0062] As used herein, “terminal internucleoside linkage” means the linkage between the last two nucleosides of an oligonucleotide or defined region thereof.
[0063] As used herein, “phosphorus linking group” means a linking group comprising a phosphorus atom and can include naturally occurring phosphorous linking groups as present in naturally occurring RNA or DNA, such as phosphodiester linking groups, or modified phosphorous linking groups that are not generally present in naturally occurring RNA or DNA, such as phosphorothioate or phosphorodithioate linking groups. Phosphorus linking groups can therefore include without limitation, phosphodiester, phosphorothioate, phosphorodithioate, phosphonate, methylphosphonate, phosphoramidate, phosphorothioamidate, thionoalkylphosphonate, phosphotriesters, thionoalkylphosphotriester and boranophosphate.
[0064] As used herein, “internucleoside phosphorus linking group” means a phosphorus linking group that directly links two nucleosides.
[0065] As used herein, “oligomeric compound” means a polymeric structure comprising two or more substructures. In certain embodiments, an oligomeric compound comprises an oligonucleotide, such as a modified oligonucletide. In certain embodiments, an oligomeric compound further comprises one or more conjugate groups and/or terminal groups and/or ligands. In certain embodiments, an oligomeric compound consists of an oligonucleotide. In certain embodiments, an oligomeric compound comprises a backbone of one or more linked monomeric sugar moieties, where each linked monomeric sugar moiety is directly or indirectly attached to a heterocyclic base moiety. In certain embodiments, oligomeric compounds may also include monomeric sugar moieties that are not linked to a heterocyclic base moiety, thereby providing abasic sites. Oligomeric compounds may be defined in terms of a nucleobase sequence only, i.e., by specifying the sequence of A, G, C, U (or T). In such a case, the structure of the sugar-phosphate backbone is not partictularly limited and may or may not comprise modified sugars and/or modified phosphates. On the other hand, oligomeric compounds may be more comprehensively defined, i.e, by specifying not only the nucleobase sequence, but also the structure of the backbone, in particular the modification status of the sugars (unmodified, 2′-OMe modified, 2′-F modified etc.) and/or of the phosphates.
[0066] As used herein, “terminal group” means one or more atom attached to either, or both, the 3′ end or the 5′ end of an oligonucleotide. In certain embodiments, a terminal group comprises one or more terminal group nucleosides.
[0067] As used herein, “conjugate” or “conjugate group” means an atom or group of atoms bound to an oligonucleotide or oligomeric compound. In certain embodiments, a conjugate group links a ligand to a modified oligonucleotide or oligomeric compound. In general, conjugate groups can modify one or more properties of the compound to which they are attached, including, but not limited to pharmacodynamic, pharmacokinetic, binding, absorption, cellular distribution, cellular uptake, charge and/or clearance properties.
[0068] As used herein, “conjugate linker” or “linker” in the context of a conjugate group means a portion of a conjugate group comprising any atom or group of atoms and which covalently link an oligonucleotide to another portion of the conjugate group. In certain embodiments, the point of attachment on the oligomeric compound is the 3 ‘-oxygen atom of the 3’-hydroxyl group of the 3′ terminal nucleoside of the oligonucleotide. In certain embodiments the point of attachment on the oligomeric compound is the 5′-oxygen atom of the 5′-hydroxyl group of the 5′ terminal nucleoside of the oligonucleotide. In certain embodiments, the bond for forming attachment to the oligomeric compound is a cleavable bond. In certain such embodiments, such cleavable bond constitutes all or part of a cleavable moiety.
[0069] In certain embodiments, conjugate groups comprise a cleavable moiety (e.g., a cleavable bond or cleavable nucleoside) and ligand portion that can comprise one or more ligands, such as a carbohydrate cluster portion, such as an N-Acetyl-Galactosamine, also referred to as “GaINAc”, cluster portion. In certain embodiments, the carbohydrate cluster portion is identified by the number and identity of the ligand. For example, in certain embodiments, the carbohydrate cluster portion comprises 2 GaINAc groups. For example, in certain embodiments, the carbohydrate cluster portion comprises 3 GaINAc groups and this is particularly advantageous. In certain embodiments, the carbohydrate cluster portion comprises 4 GaINAc groups. Such ligand portions are attached to an oligomeric compound via a cleavable moiety, such as a cleavable bond or cleavable nucleoside. The ligands can be arranged in a linear or branched configuration, such as a biantennary or triantennary configurations. A particular carbohydrate cluster has the following formula:
##STR00001##
wherein in this structural formula one, two, or three phosphodiester linkages can also be substituted by phosphothionate linkages.
[0070] As used herein, “cleavable moiety” means a bond or group that is capable of being cleaved under physiological conditions. In certain embodiments, a cleavable moiety is cleaved inside a cell or sub-cellular compartments, such as an endosome or lysosome. In certain embodiments, a cleavable moiety is cleaved by endogenous enzymes, such as nucleases. In certain embodiments, a cleavable moiety comprises a group of atoms having one, two, three, four, or more than four cleavable bonds. In certain embodiments, a cleavable moiety is a phosphodiester linkage.
[0071] As used herein, “cleavable bond” means any chemical bond capable of being broken.
[0072] As used herein, “carbohydrate cluster” means a compound having one or more carbohydrate residues attached to a linker group.
[0073] As used herein, “modified carbohydrate” means any carbohydrate having one or more chemical modifications relative to naturally occurring carbohydrates.
[0074] As used herein, “carbohydrate derivative” means any compound which may be synthesized using a carbohydrate as a starting material or intermediate.
[0075] As used herein, “carbohydrate” means a naturally occurring carbohydrate, a modified carbohydrate, or a carbohydrate derivative. A carbohydrate is a biomolecule including carbon (C), hydrogen (H) and oxygen (O) atoms. Carbohydrates can include monosaccharide, disaccharides, trisaccharides, tetrasaccharides, oligosaccharides or polysaccharides, such as one or more galactose moieties, one or more lactose moieties, one or more N-Acetyl-Galactosamine moieties, and/or one or more mannose moieties. A particularly advantageous carbohydrate is N-Acetyl-Galactosamine.
[0076] As used herein, “strand” means an oligomeric compound comprising linked nucleosides.
[0077] As used herein, “single strand” or “single-stranded” means an oligomeric compound comprising linked nucleosides that are connected in a continuous sequence without a break therebetween. Such single strands may include regions of sufficient self-complementarity so as to be capable of forming a stable self-duplex in a hairpin structure.
[0078] As used herein, “hairpin” means a single stranded oligomeric compound that includes a duplex formed by base pairing between sequences in the strand that are self-complementary and opposite in directionality.
[0079] As used herein, “hairpin loop” means an unpaired loop of linked nucleosides in a hairpin that is created as a result of hybridization of the self-complementary sequences. The resulting structure looks like a loop or a U-shape.
[0080] As used herein, “directionality” means the end-to-end chemical orientation of an oligonucleotide based on the chemical convention of numbering of carbon atoms in the sugar moiety meaning that there will be a 5′-end defined by the 5′ carbon of the sugar moiety, and a 3′-end defined by the 3′ carbon of the sugar moiety. In a duplex or double stranded oligonucleotide, the respective strands run in opposite 5′ to 3′ directions to permit base pairing between them.
[0081] As used herein, “duplex” means two or more complementary strand regions, or strands, of an oligonucleotide or oligonucleotides, hybridized together by way of non-covalent, sequence-specific interaction therebetween. Most commonly, the hybridization in the duplex will be between nucleobases adenine (A) and thymine (T), and/or (A) adenine and uracil (U), and/or guanine (G) and cytosine (C). The duplex may be part of a single stranded structure, wherein self-complementarity leads to hybridization, or as a result of hybridization between respective strands in a double stranded construct.
[0082] As used herein, “double strand” or “double stranded” means a pair of oligomeric compounds that are hybridized to one another. In certain embodiments, a double-stranded oligomeric compound comprises a first and a second oligomeric compound.
[0083] As used herein, “expression” means the process by which a gene ultimately results in a protein. Expression includes, but is not limited to, transcription, post-transcriptional modification (e.g., splicing, polyadenlyation, addition of 5′-cap), and translation.
[0084] As used herein, “transcription” or “transcribed” refers to the first of several steps of DNA based gene expression in which a target sequence of DNA is copied into RNA (especially mRNA) by the enzyme RNA polymerase. During transcription, a DNA sequence is read by an RNA polymerase, which produces a complementary, antiparallel RNA sequence called a primary transcript.
[0085] As used herein, “target sequence” means a sequence to which an oligomeric compound is intended to hybridize to result in a desired activity with respect to PCSK9 expression. Oligonucleotides have sufficient complementarity to their target sequences to allow hybridization under physiological conditions.
[0086] As used herein, “nucleobase complementarity” or “complementarity” when in reference to nucleobases means a nucleobase that is capable of base pairing with another nucleobase. For example, in DNA, adenine (A) is complementary to thymine (T). For example, in RNA, adenine (A) is complementary to uracil (U). In both DNA and RNA, guanine (G) is complementary to cytosine (C). In certain embodiments, complementary nucleobase means a nucleobase of an oligomeric compound that is capable of base pairing with a nucleobase of its target sequence. For example, if a nucleobase at a certain position of an oligomeric compound is capable of hydrogen bonding with a nucleobase at a certain position of a target sequence, then the position of hydrogen bonding between the oligomeric compound and the target sequence is considered to be complementary at that nucleobase pair. Nucleobases comprising certain modifications may maintain the ability to pair with a counterpart nucleobase and thus, are still capable of nucleobase complementarity.
[0087] As used herein, “non-complementary” in reference to nucleobases means a pair of nucleobases that do not form hydrogen bonds with one another.
[0088] As used herein, “complementary” in reference to oligomeric compounds (e.g., linked nucleosides, oligonucleotides) means the capacity of such oligomeric compounds or regions thereof to hybridize to a target sequence, or to a region of the oligomeric compound itself, through nucleobase complementarity.
[0089] Complementary oligomeric compounds need not have nucleobase complementarity at each nucleoside. Rather, some mismatches are tolerated. In certain embodiments, complementary oligomeric compounds or regions are complementary at 70% of the nucleobases (70% complementary). In certain embodiments, complementary oligomeric compounds or regions are 80%> complementary. In certain embodiments, complementary oligomeric compounds or regions are 90%> complementary. In certain embodiments, complementary oligomeric compounds or regions are at least 95% complementary. In certain embodiments, complementary oligomeric compounds or regions are 100% complementary.
[0090] As used herein, “self-complementarity” in reference to oligomeric compounds means a compound that may fold back on itself, creating a duplex as a result of nucleobase hybridization of internal complementary strand regions. Depending on how close together and/or how long the strand regions are, then the compound may form hairpin loops, junctions, bulges or internal loops.
[0091] As used herein, “mismatch” means a nucleobase of an oligomeric compound that is not capable of pairing with a nucleobase at a corresponding position of a target sequence, or at a corresponding position of the oligomeric compound itself when the oligomeric compound hybridizes as a result of self-complementarity, when the oligomeric compound and the target sequence and/or self-complementary regions of the oligomeric compound, are aligned. As used herein, “hybridization” means the pairing of complementary oligomeric compounds (e.g., an oligomeric compound and its target sequence). While not limited to a particular mechanism, the most common mechanism of pairing involves hydrogen bonding, which may be Watson-Crick, Hoogsteen or reversed Hoogsteen hydrogen bonding, between complementary nucleobases.
[0092] As used herein, “specifically hybridizes” means the ability of an oligomeric compound to hybridize to one nucleic acid site with greater affinity than it hybridizes to another nucleic acid site.
[0093] As used herein, “fully complementary” in reference to an oligomeric compound or region thereof means that each nucleobase of the oligomeric compound or region thereof is capable of pairing with a nucleobase of a complementary nucleic acid target sequence or a self-complementary region of the oligomeric compound. Thus, a fully complementary oligomeric compound or region thereof comprises no mismatches or unhybridized nucleobases with respect to its target sequence or a self-complementary region of the oligomeric compound.
[0094] As used herein, “percent complementarity” means the percentage of nucleobases of an oligomeric compound that are complementary to an equal-length portion of a target nucleic acid. Percent complementarity is calculated by dividing the number of nucleobases of the oligomeric compound that are complementary to nucleobases at corresponding positions in the target nucleic acid by the total length of the oligomeric compound.
[0095] As used herein, “percent identity” means the number of nucleobases in a first nucleic acid that are the same type (independent of chemical modification) as nucleobases at corresponding positions in a second nucleic acid, divided by the total number of nucleobases in the first nucleic acid.
[0096] As used herein, “modulation” means a change of amount or quality of a molecule, function, or activity when compared to the amount or quality of a molecule, function, or activity prior to modulation. For example, modulation includes the change, either an increase (stimulation or induction) or a decrease (inhibition or reduction) in gene expression.
[0097] As used herein, “type of modification” in reference to a nucleoside or a nucleoside of a “type” means the chemical modification of a nucleoside and includes modified and un-modified nucleosides. Accordingly, unless otherwise indicated, a “nucleoside having a modification of a first type” may be an unmodified nucleoside.
[0098] As used herein, “differently modified” mean chemical modifications or chemical substituents that are different from one another, including absence of modifications. Thus, for example, a MOE nucleoside and an unmodified naturally occurring RNA nucleoside are “differently modified,” even though the naturally occurring nucleoside is unmodified. Likewise, DNA and RNA oligonucleotides are “differently modified,” even though both are naturally-occurring unmodified nucleosides. Nucleosides that are the same but for comprising different nucleobases are not differently modified. For example, a nucleoside comprising a 2′-OMe modified sugar moiety and an unmodified adenine nucleobase and a nucleoside comprising a 2′-OMe modified sugar moiety and an unmodified thymine nucleobase are not differently modified.
[0099] As used herein, “the same type of modifications” refers to modifications that are the same as one another, including absence of modifications. Thus, for example, two unmodified RNA nucleosides have “the same type of modification,” even though the RNA nucleosides are unmodified. Such nucleosides having the same type modification may comprise different nucleobases.
[0100] As used herein, “region” or “regions”, or “portion” or “portions”, mean a plurality of linked nucleosides that have a function or character as defined herein, in particular with reference to the claims and definitions as provided herein. Typically such regions or portions comprise at least 10, at least 11, at least 12 or at least 13 linked nucleosides. For example, such regions can comprise 13 to 20 linked nucleosides, such as 13 to 16 or 18 to 20 linked nucleosides. Typically a first region as defined herein consists essentially of 18 to 20 nucleosides and a second region as defined herein consists essentially of 13 to 16 linked nucleosides.
[0101] As used herein, “pharmaceutically acceptable carrier or diluent” means any substance suitable for use in administering to an animal. In certain embodiments, a pharmaceutically acceptable carrier or diluent is sterile saline. In certain embodiments, such sterile saline is pharmaceutical grade saline.
[0102] As used herein, “substituent” and “substituent group,” means an atom or group that replaces the atom or group of a named parent compound. For example a substituent of a modified nucleoside is any atom or group that differs from the atom or group found in a naturally occurring nucleoside (e.g., a modified 2′-substituent is any atom or group at the 2 ′-position of a nucleoside other than H or OH). Substituent groups can be protected or unprotected. In certain embodiments, compounds of the present disclosure have substituents at one or at more than one position of the parent compound. Substituents may also be further substituted with other substituent groups and may be attached directly or via a linking group such as oxygen or an alkyl or hydrocarbyl group to a parent compound.
[0103] Such substituents can be present as the modification on the sugar moiety, in particular a substituent present at the 2′-position of the sugar moiety. Unless otherwise indicated, groups amenable for use as substituents include without limitation, one or more of halo, hydroxyl, alkyl, alkenyl, alkynyl, acyl, carboxyl, alkoxy, alkoxyalkylene and amino substituents. Certain substituents as described herein can represent modifications directly attached to a ring of a sugar moiety (such as a halo, such as fluoro, directly attached to a sugar ring), or a modification indirectly linked to a ring of a sugar moiety by way of an oxygen linking atom that itself is directly linked to the sugar moiety (such as an alkoxyalkylene, such as methoxyethylene, linked to an oxygen atom, overall providing an MOE substituent as described herein attached to the 2′-position of the sugar moiety).
[0104] As used herein, “alkyl,” as used herein, means a saturated straight or branched monovalent C.sub.1-6 hydrocarbon radical, with methyl being a most advantageous alkyl as a substituent at the 2′-position of the sugar moiety. The alkyl group typically attaches to an oxygen linking atom at the 2′poisition of the sugar, therefore, overall providing a —Oalkyl substituent, such as an —OCH.sub.3 substituent, on a sugar moiety of an oligomeric compound as described herein. This will be well understood be a person skilled in the art.
[0105] As used herein, “alkylene” means a saturated straight or branched divalent hydrocarbon radical of the general formula —C.sub.nH.sub.2n— where n is 1-6. Advantageously the alkylenes are methylene or ethylene.
[0106] As used herein, “alkenyl” means a straight or branched unsaturated monovalent C.sub.2-6 hydrocarbon radical, with ethenyl or propenyl being most advantageous alkenyls as a substituent at the 2′-position of the sugar moiety. As will be well understood in the art, the degree of unsaturation that is present in an alkenyl radical is the presence of at least one carbon to carbon double bond. The alkenyl group typically attaches to an oxygen linking atom at the 2′-position of the sugar, therefore, overall providing a —Oalkenyl substituent, such as an —OCH.sub.2CH═CH.sub.2 substituent, on a sugar moiety of an oligomeric compound as described herein. This will be well understood be a person skilled in the art.
[0107] As used herein, “alkynyl” means a straight or branched unsaturated C.sub.2-6 hydrocarbon radical, with ethynyl being a most advantageous alkynyl as a substituent at the 2′-position of the sugar moiety. As will be well understood in the art, the degree of unsaturation that is present in an alkynyl radical is the presence of at least one carbon to carbon triple bond. The alkynyl group typically attaches to an oxygen linking atom at the 2′-position of the sugar, therefore, overall providing a —Oalkynyl substituent on a sugar moiety of an oligomeric compound as described herein. This will be well understood be a person skilled in the art.
[0108] As used herein, “carboxyl” is a radical having a general formula —CO.sub.2H.
[0109] As used herein, “acyl” means a radical formed by removal of a hydroxyl group from a carboxyl radical as defined herein and has the general Formula —C(O)—X where X is typically C.sub.1-6 alkyl. As used herein, “alkoxy” means a radical formed between an alkyl group, such as a C.sub.1-6 alkyl group, and an oxygen atom wherein the oxygen atom is used to attach the alkoxy group either to a parent molecule (such as at the 2′-position of a sugar moiety), or to another group such as an alkylene group as defined herein. Examples of alkoxy groups include without limitation, methoxy, ethoxy, propoxy, isopropoxy, n-butoxy, sec-butoxy and tert-butoxy. Alkoxy groups as used herein may optionally include further substituent groups.
[0110] As used herein, alkoxyalkylene means an alkoxy group as defined herein that is attached to an alkylene group also as defined herein, and wherein the oxygen atom of the alkoxy group attaches to the alkylene group and the alkylene attaches to a parent molecule. The alkylene group typically attaches to an oxygen linking atom at the 2′-position of the sugar, therefore, overall providing a —Oalkylenealkoxy substituent, such as an —OCH.sub.2CH.sub.2OCH.sub.3 substituent, on a sugar moiety of an oligomeric compound as described herein. This will be well understood by a person skilled in the art and is generally referred to as an MOE substituent as defined herein and as known in the art.
[0111] As used herein, “amino” includes primary, secondary and tertiary amino groups.
[0112] As used herein, “halo” and “halogen,” mean an atom selected from fluorine, chlorine, bromine and iodine.
[0113] As used herein, the term “mxRNA” is in particular understood as defined in WO 2020/044186 A2 which is incorporated by reference herein in its entirety.
[0114] It will also be understood that oligomeric compounds as described herein may have one or more non-hybridizing nucleosides at one or both ends of one or both strands (overhangs) and/or one or more internal non-hybridizing nucleosides (mismatches) provided there is sufficient complementarity to maintain hybridization under physiologically relevant conditions.
[0115] Alternatively, oligomeric compounds as described herein may be blunt ended at at least one end.
[0116] The term “comprising” is used herein to mean including the method steps or elements identified, but that such steps or elements do not comprise an exclusive list and as such there may be present additional steps or elements.
[0117] Further, to the extent that the term “includes” is used in either the detailed description or the claims, such term is intended to be inclusive in a manner similar to the term “comprising” as “comprising” is interpreted when employed as a transitional word in a claim.
[0118] The following items are provided:
[0119] 1. An oligomeric compound capable of inhibiting expression of PCSK9, wherein the compound comprises at least a first region of linked nucleosides having at least a first nucleobase sequence that is at least partially complementary to at least a portion of RNA transcribed from a PCSK9 gene, wherein the first nucleobase sequence is selected from the following sequences, or a portion thereof: SEQ ID NOs 1 to 250, or SEQ ID NOs 501 to 543, wherein the portion advantageously has a length of at least 18 nucleotides.
[0120] The first region is also referred to as antisense region, and the second region is also referred to as sense region. As disclosed in specific embodiments below, the two regions may be located on the same strand, advantageously in an adjacent manner. This gives rise to hairpin molecules, also referred to as mxRNAs. On the other hand, the two regions may be located on separate strands which gives rise to double-stranded RNAs (dsRNAs), wherein advantageously each strand consists of the respective region.
[0121] Moreover, the regions may serve as building blocks for muRNAs (see above). In other words, the first and the second region as defined herein may be used, in accordance with the following definition of muRNAs, as first and third regions, respectively:
[0122] A nucleic acid construct (muRNA) comprising at least: [0123] (a) a first nucleic acid portion that is at least partially complementary to at least a first portion of an RNA which is transcribed from a PCSK9 gene; [0124] (b) a second nucleic acid portion that is at least partially complementary to at least a second portion of an RNA which is transcribed from another gene; [0125] (c) a third nucleic acid portion that is at least partially complementary to the first nucleic acid portion of (a), so as to form a first nucleic acid duplex region therewith; [0126] (d) a fourth nucleic acid portion that is at least partially complementary to the second nucleic acid portion of (b), so as to form a second nucleic acid duplex region therewith.
[0127] Specific embodiments of and further aspects relating to muRNAs are disclosed in WO 2020/065602.
[0128] 2. The oligomeric compound according to item 1, which further comprises at least a second region of linked nucleosides having at least a second nucleobase sequence that is at least partially complementary to the first nucleobase sequence and is selected from the following sequences, or a portion thereof: SEQ ID NOs 251 to 500, or SEQ ID NOs 544 to 586, wherein the portion advantageously has a length of at least 11 nucleotides.
[0129] 3. The oligomeric compound according to item 1 or 2, wherein the first nucleobase sequence is selected from the following sequences, or a portion thereof: SEQ ID NOs 13, 31, 76, 127, 55, 29, 28, 53, 44, 49, 58, 94, 52, 57, 43, 36, 21, 35, 232, 87, 48, 139, 46, 233, 34, 100, and 77.
[0130] 4. The oligomeric compound according to item 3, wherein the second nucleobase sequence is selected from the following sequences, or a portion thereof: SEQ ID NOs 263, 281, 326, 377, 305, 279, 278, 303, 294, 299, 308, 344, 302, 307, 293, 286, 271, 285, 482, 337, 298, 389, 296, 483, 284, 350, and 327, and wherein the portion is advantageously 14 nucleosides long and lacks the 5′-terminal nucleobase as set forth in the SEQ ID NOs.
[0131] 5. The oligomeric compound according to any of items 1 to 4, wherein the first nucleobase sequence is selected from the following sequences, or a portion thereof: SEQ ID NOs 29, 44, 46, 52, 53, 55, and 57; advantageously SEQ ID NOs: 29, 44, 53 and 57, more advantageously SEQ ID NO: 29.
[0132] This embodiments defines antisense nucleobase sequences which provide for surprisingly outstanding performance. For evidence, reference is made to the Examples.
[0133] 6. The oligomeric compound according to item 5, wherein the second nucleobase sequence is selected from the following sequences, or a portion thereof: SEQ ID NOs 279, 294, 296, 302, 303, 305, and 307, advantageously SEQ ID NOs: 279, 294, 303 and 307, more advantageously SEQ ID NO: 279, and wherein the portion is advantageously 14 nucleosides long and lacks the 5′-terminal nucleobase as set forth in the SEQ ID NOs.
[0134] 7. The oligomeric compound according to any of items 1 to 6, wherein the first region of linked nucleosides consists essentially of 18 to 35, advantageously 18 to 20, more advantageously 18 or 19, and yet more advantageously 19 linked nucleosides.
[0135] 8. The oligomeric compound according to any of items 2 to 7, wherein the second region of linked nucleosides consists essentially of 11 to 35, advantageously 11 to 20, more advantageously 13 to 16, and yet more advantageously 14 or 15, most advantageously 14 linked nucleosides.
[0136] 9. The oligomeric compound according to any of items 2 to 8, which comprises at least one complementary duplex region that comprises at least a portion of the first nucleoside region directly or indirectly linked to at least a portion of the second nucleoside region, wherein advantageously the duplex region has a length of 11 to 19, more advantageously 14 to 19, and yet more advantageously 14 or 15 base pairs, most advantageously 14 base pairs, wherein optionally there is one mismatch within the duplex region.
[0137] 10. The oligomeric compound according to item 9, wherein each of the first and second nucleoside regions has a 5′ to 3′ directionality thereby defining 5′ and 3′ regions respectively thereof.
[0138] 11. The oligomeric compound according to item 10, wherein the 5′ region of the first nucleoside region is directly or indirectly linked to the 3′ region of the second nucleoside region, for example by complementary base pairing, and/or wherein the 3′ region of the first nucleoside region is directly or indirectly linked to the 5′ region of the second nucleoside region, wherein advantageously the 5′ terminal nucleoside of the first nucleoside region base pairs with the 3′ terminal nucleoside of the second nucleoside region.
[0139] 12. The oligomeric compound according to any of items 1 to 11, which further comprises one or more ligands.
[0140] 13. The oligomeric compound according to item 12, wherein the one or more ligands are conjugated to the second nucleoside region and/or the first nucleoside region.
[0141] 14. The oligomeric compound according to item 13, as dependent on item 10, wherein the one or more ligands are conjugated at the 3′ region, advantageously to the 3′ end of the second nucleoside region and/or of the first nucleoside region, and/or to the 5′ end of the second nucleoside region.
[0142] 15. The oligomeric compound according to any of items 12 to 14, wherein the one or more ligands are any cell directing moiety, such as lipids, carbohydrates, aptamers, vitamins and/or peptides that bind cellular membrane or a specific target on cellular surface.
[0143] 16. The oligomeric compound according to item 15, wherein the one or more ligands comprise one or more carbohydrates.
[0144] 17. The oligomeric compound according to item 16, wherein the one or more carbohydrates can be a monosaccharide, disaccharide, trisaccharide, tetrasaccharide, oligosaccharide or polysaccharide.
[0145] 18. The oligomeric compound according to item 17, wherein the one or more carbohydrates comprise or consist of one or more hexose moieties.
[0146] 19. The oligomeric compound according to item 18, wherein the one or more hexose moieties are one or more galactose moieties, one or more lactose moieties, one or more N-Acetyl-Galactosamine moieties, and/or one or more mannose moieties.
[0147] 20. The oligomeric compound according to item 19, wherein the one or more carbohydrates comprise one or more N-Acetyl-Galactosamine moieties.
[0148] 21. The oligomeric compound according to item 20, which comprises two or three N-Acetyl-Galactosamine moieties, advantageously three.
[0149] 22. The oligomeric compound according to any of items 12 to 21, wherein the one or more ligands are attached to the oligomeric compound, advantageously to the second nucleoside region thereof, in a linear configuration, or in a branched configuration.
[0150] 23. The oligomeric compound according to item 22, wherein the one or more ligands are attached to the oligomeric compound as a biantennary or triantennary configuration.
[0151] 24. The oligomeric compound according to any one of items 1 to 23, wherein the compound consists of the first region of linked nucleosides and the second region of linked nucleosides. Each of the regions may constitute a separate strand, thereby giving rise to a double-stranded RNA (dsRNA). Particularly advantageous dsRNAs are those with a length of the first strand of 19 nucleosides and a length of the second region of 14 or 15, advantageously 14 nucleosides. When used for defining the length of a region or strand, the terms “nucleoside” and “nucleotide” (sometimes abbreviated “nt”) are used equivalently.
[0152] 25. The oligomeric compound according to any one of items 9 to 24, wherein the oligomeric compound comprises a single strand comprising the first and second nucleoside regions, wherein the single strand dimerises whereby at least a portion of the first nucleoside region is directly or indirectly linked to at least a portion of the second nucleoside region so as to form the at least partially complementary duplex region.
[0153] The term “dimerise” in relation to the embodiment above refers to the formation of intramolecular base pairs between first and second region.
[0154] 26. The oligomeric compound according to item 25, wherein the first nucleoside region has a greater number of linked nucleosides compared to the second nucleoside region, whereby the additional number of linked nucleosides of the first nucleoside region form a hairpin loop linking the first and second nucleoside regions.
[0155] Such compounds are also referred to as hairpins or mxRNAs herein.
[0156] 27. The oligomeric compound according to item 26, as dependent on claim 10, whereby the hairpin loop is present at the 3′ region of the first nucleoside region, and/or wherein the hairpin loop comprises 4 or 5 linked nucleosides.
[0157] Particularly advantageous is a length of the first region of 19 nucleosides, of the second region of 14 nucleotides, and of the hairpin loop of 5 nucleotides, wherein the 5 nucleotides in the hairpin are the 5 3′-terminal nucleosides of the first region. Such molecular architecture of a hairpin or mxRNA is also designated “14-5-14” herein.
[0158] 28. The oligomeric compound according to item 26 or 27, the compound has a nucleobase sequence selected from SEQ ID NOs: 587 to 590, and advantageously is selected from Table 6.
[0159] 29. The oligomeric compound according to any of items 1 to 28, which comprises internucleoside linkages and wherein at least one internucleoside linkage is a modified internucleoside linkage.
[0160] Specific modified internucleoside linkages are the subject of the specific embodiments which follow. Certain modified internucleoside linkages are known in the art and described in, for example, Hu et al., Signal Transduction and Targeted Therapy (2020)5:101.
[0161] 30. The oligomeric compound according to item 29, wherein the modified inter-nucleoside linkage is a phosphorothioate or phosphorodithioate internucleoside linkage.
[0162] 31. The oligomeric compound according to item 30, which comprises 1 to 15 phosphorothioate or phosphorodithioate internucleoside linkages.
[0163] 32. The oligomeric compound according to item 31, which comprises 7, 8, 9 or 10 phosphorothioate or phosphorodithioate internucleoside linkages.
[0164] 33. The oligomeric compound according to any of items 30 to 32, as dependent on item 10, which comprises one or more phosphorothioate or phosphorodithioate internucleoside linkages at the 5′ region of the first nucleoside region.
[0165] 34. The oligomeric compound according to any of items 30 to 33, as dependent on item 10, which comprises one or more phosphorothioate or phosphorodithioate internucleoside linkages at the 5′ region of the second nucleoside region.
[0166] 35. The oligomeric compound according to any of items 30 to 34, as dependent on item 26, which comprises phosphorothioate or phosphorodithioate internucleoside linkages between at least two, advantageously at least three, advantageously at least four, advantageously at least five, adjacent nucleosides of the hairpin loop, dependent on the number of nucleotides present in the hairpin loop.
[0167] 36. The oligomeric compound according to item 35, which comprises a phosphorothioate or phosphorodithioate internucleoside linkage between each adjacent nucleoside that is present in the hairpin loop.
[0168] 37. The oligomeric compound according to any of items 1 to 36, wherein at least one nucleoside comprises a modified sugar.
[0169] Specific modified sugars are subject of the embodiments which follow. Certain modified sugars are known in the art and described in, for example, Hu et al., Signal Transduction and Targeted Therapy (2020)5:101.
[0170] 38. The oligomeric compound according to item 37, wherein the modified sugar is selected from 2′ modified sugars, locked nucleic acid (LNA) sugar, (S)-constrained ethyl bicyclic nucleic acid sugar, tricyclo-DNA sugar, morpholino, unlocked nucleic acid (UNA) sugar, and glycol nucleic acid (GNA) sugar.
[0171] 39. The oligomeric compound according to item 38, wherein the 2′ modified sugar is selected from 2′-O-methyl modified sugar, 2′-O-methoxyethyl modified sugar, 2′-F modified sugar, 2′-arabino-fluoro modified sugar, 2′-O-benzyl modified sugar, and 2′-O-methyl-4-pyridine modified sugar.
[0172] 40. The oligomeric compound according to item 39, wherein at least one modified sugar is a 2′-O-methyl modified sugar.
[0173] 41. The oligomeric compound according to item 39 or 40, wherein at least one modified sugar is a 2′-F modified sugar.
[0174] 42. The oligomeric compound of item 40 or 41, wherein the sugar is ribose.
[0175] 43. The oligomeric compound according to any of items 40 to 42, as dependent on item 10, wherein sugars of the nucleosides at any of positions 2 and 14 downstream from the first nucleoside of the 5′ region of the first nucleoside region, do not contain 2′-O-methyl modifications.
[0176] 44. The oligomeric compound according to any of items 40 to 43, as dependent on item 10, wherein sugars of the nucleosides of the second nucleoside region, that correspond in position to any of the nucleosides of the first nucleoside region at any of positions 9 to 11 downstream from the first nucleotide of the 5′ region of the first nucleoside region, do not contain 2′-O-methyl modifications.
[0177] 45. The oligomeric compound of any one of items 40 to 44, wherein the 3′ terminal position of the second nucleoside region does not contain a 2′-O-methyl modification.
[0178] 46. The oligomeric compound according to item 44 or 45, wherein sugars of the nucleosides at any of positions 2 and 14 downstream from the first nucleoside of the 5′ region of the first nucleoside region, contain 2′-F modifications.
[0179] 47. The oligomeric compound according to any of items 44 to 46, wherein sugars of the nucleosides of the second nucleoside region, that correspond in position to any of the nucleosides of the first nucleoside region at any of positions 9 to 11 downstream from the first nucleoside of the 5′ region of the first nucleoside region, contain 2′-F modifications.
[0180] 48. The oligomeric compound of item 46 or 47, wherein the 3′ terminal position of the second nucleoside region contains a 2′-F modification.
[0181] 49. The oligomeric compound according to any of items 42 to 48, as dependent on item 10, wherein one or more of the odd numbered nucleosides starting from the 5′ region of the first nucleoside region are modified, and/or wherein one or more of the even numbered nucleotides starting from the 5′ region of the first nucleoside region are modified, wherein typically the modification of the even numbered nucleotides is a second modification that is different from the modification of odd numbered nucleotides.
[0182] 50. The oligomeric compound according to item 49, wherein one or more of the odd numbered nucleosides starting from the 3′ region of the second nucleoside region are modified by a modification that is different from the modification of odd numbered nucleosides of the first nucleoside region.
[0183] 51. The oligomeric compound according to item 49 or 50, wherein one or more of the even numbered nucleosides starting from the 3′ region of the second nucleoside region are modified by a modification that is different from the modification of even numbered nucleosides of the first nucleoside region according to item 53.
[0184] 52. The oligomeric compound according to any of items 49 to 51, wherein at least one or more of the modified even numbered nucleosides of the first nucleoside region is adjacent to at least one or more of the differently modified odd numbered nucleosides of the first nucleoside region.
[0185] 53. The oligomeric compound according to any of items 49 to 52, wherein at least one or more of the modified even numbered nucleosides of the second nucleoside region is adjacent to at least one or more of the differently modified odd numbered nucleosides of the second nucleoside region.
[0186] 54. The oligomeric compound according to any of items 49 to 53, wherein sugars of one or more of the odd numbered nucleosides starting from the 5′ region of the first nucleoside region are 2′-O-methyl modified sugars.
[0187] 55. The oligomeric compound according to any of items 49 to 54, wherein one or more of the even numbered nucleosides starting from the 5′ region of the first nucleoside region are 2′-F modified sugars.
[0188] 56. The oligomeric compound according to any of items 49 to 55, wherein sugars of one or more of the odd numbered nucleosides starting from the 3′ region of the second nucleoside region are 2′-F modified sugars.
[0189] 57. The oligomeric compound according to any of items 49 to 56, wherein one or more of the even numbered nucleosides starting from the 3′ region of the second nucleoside region are 2′-O-methyl modified sugars.
[0190] 58. The oligomeric compound according to any of items 37 to 57, wherein sugars of a plurality of adjacent nucleosides of the first nucleoside region are modified by a common modification.
[0191] 59. The oligomeric compound according to any of items 37 to 58, wherein sugars of a plurality of adjacent nucleosides of the second nucleoside region are modified by a common modification.
[0192] 60. The oligomeric compound according to any of items 49 to 59, as dependent on item 26, wherein sugars of a plurality of adjacent nucleosides of the hairpin loop are modified by a common modification.
[0193] 61. The oligomeric compound according to any of items 58 to 60, wherein the common modification is a 2′-F modified sugar.
[0194] 62. The oligomeric compound according to any of items 58 to 60, wherein the common modification is a 2′-O-methyl modified sugar.
[0195] 63. The oligomeric compound according to item 62, wherein the plurality of adjacent 2′-O-methyl modified sugars are present in at least eight adjacent nucleosides of the first and/or second nucleoside regions.
[0196] 64. The oligomeric compound according to item 62, wherein the plurality of adjacent 2′-O-methyl modified sugars are present in three or four adjacent nucleosides of the hairpin loop.
[0197] 65. The oligomeric compound according to item 37, as dependent on item 26, wherein the hairpin loop comprises at least one nucleoside having a modified sugar.
[0198] 66. The oligomeric compound according to item 66, wherein the at least one nucleoside is adjacent a nucleoside with a differently modified sugar.
[0199] 67. The oligomeric compound according to item 66, wherein the modified sugar is a 2′-O-methyl modified sugar, and the differently modified sugar is a 2′-F modified sugar.
[0200] 68. The oligomeric compound according to any of items 1 to 67, which comprises one or more nucleosides having an un-modified sugar moiety.
[0201] 69. The oligomeric compound according to item 68, wherein the unmodified sugar is present in the 5′ region of the second nucleoside region.
[0202] 70. The oligomeric compound according to item 68 or 69, as dependent on item 26, wherein the unmodified sugar is present in the hairpin loop.
[0203] 71. The oligomeric compound according to any of items 1 to 70, wherein one or more nucleosides of the first nucleoside region and/or the second nucleoside region is an inverted nucleoside and is attached to an adjacent nucleoside via the 3′ carbon of its sugar and the 3′ carbon of the sugar of the adjacent nucleoside, and/or one or more nucleosides of the first nucleoside region and/or the second nucleoside region is an inverted nucleoside and is attached to an adjacent nucleoside via the 5′ carbon of its sugar and the 5′ carbon of the sugar of the adjacent nucleoside.
[0204] 72. The oligomeric compound according to any of items 1 to 71, which is blunt ended.
[0205] 73. The oligomeric compound according to any of items 1 to 71, wherein either the first or second nucleoside region has an overhang.
[0206] 74. The oligomeric compound according to any one of the preceding items, wherein the first region of linked nucleotides is selected from Table 2b or Table 3b, advantageously from Table 1a, more advantageously from Table 5.
[0207] 75. The oligomeric compound according to any one of the preceding items, wherein the second region of linked nucleotides is selected from Table 2d or Table 3d, advantageously from Table 1 b, more advantageously from Table 5.
[0208] 76. A composition comprising an oligomeric compound according to any of items 1 to 75, and a physiologically acceptable excipient.
[0209] 77. A pharmaceutical composition comprising an oligomeric compound according to any of items 1 to 75.
[0210] 78. The pharmaceutical composition of item 77, further comprising a pharmaceutically acceptable excipient, diluent, antioxidant, and/or preservative.
[0211] 79. The pharmaceutical composition of item 77 or 78, wherein the oligomeric compound is the only pharmaceutically active agent.
[0212] 80. The pharmaceutical composition of item 79, wherein the pharmaceutical composition is to be administered to patients or individuals which are statin-intolerant and/or for whom statins are contraindicated.
[0213] 81. The pharmaceutical composition of item 77 or 78, wherein the pharmaceutical composition furthermore comprises one or more further pharmaceutically active agents.
[0214] 82. The pharmaceutical composition of item 81, wherein the further pharmaceutically active agent(s) is/are a further oligomeric compound which is directed to a target different from PCSK9 and/or a lipid-lowering agent distinct from the oligomeric compound, wherein the lipid-lowering agent is advantageously a statin or ezetimib.
[0215] 83. The pharmaceutical composition of item 81 or 82, wherein the oligomeric compound and the further pharmaceutically active agent(s) are to be administered concomitantly or in any order.
[0216] 84. An oligomeric compound according to any of items 1 to 75, for use in human or veterinary medicine or therapy.
[0217] 85. An oligomeric compound according to any of items 1 to 75, for use in a method of treating a disease or disorder.
[0218] 86. The compound for use of item 85, wherein the disease or disorder is a PCSK9-associated disease or disorder, or a disease or disorder requiring reduction of low-density lipoprotein (LDL) cholesterol, the disease or disorder advantageously being selected from dyslipidemia including mixed dyslipidemia, hypercholesterolemia, heterozygous familial hypercholesterolemia, non-familial hypercholesterolemia; atherosclerosis; and atherosclerotic cardiovascular disease (ASCVD) including myocardial infarction, stroke and peripheral arterial disease.
[0219] 87. A method of treating a disease or disorder comprising administration of an oligomeric compound according to any of items 1 to 75, to an individual in need of treatment.
[0220] 88. The method according to item 87, wherein the oligomeric compound is administered subcutaneously or intravenously to the individual.
[0221] 89. Use of an oligomeric compound according to any of items 1 to 75, for use in research as a gene function analysis tool.
[0222] The following Tables show nucleobase sequences of antisense and sense strands of oligomeric compounds as described herein, and definitions of antisense and sense strands of modified oligomeric compounds (the notation including nucleobase sequence, sugar modifications, and, where applicable, modified phosphates).
[0223] The notation used is common in the art and as the following meaning:
[0224] A represents adenine;
[0225] U represents uracil;
[0226] C represents cytosine;
[0227] G represents guanine.
[0228] P represents a terminal phosphate group;
[0229] m represents a methyl modification at the 2′ position of the sugar of the underlying nucleoside;
[0230] f represents a fluoro modification at the 2′ position of the sugar of the underlying nucleoside.
[0231] r indicates an unmodified (2′-OH) ribonucleotide;
[0232] (ps) or # or * represents a phosphorothioate inter-nucleoside linkage;
[0233] i represents an inverted inter-nucleoside linkage, which can be either 3′-3′, or 5′-5′;
[0234] vp represents vinyl phosphonate;
[0235] mvp represents methyl vinyl phosphonate;
[0236] 3xGaINAc or Mono-Galnac-PAHMono-Galnac-PAHMono-Galnac-PA/ represents a trivalent GaINAc, advantageously a “toothbrush” moiety as disclosed herein.
[0237] Sometimes, nucleoside are in square brackets for better reading. They do not indicate structural elements or modifications.
[0238] To the extent displayed, the presence of a 5′-terminal phosphate (“P”) is optional. On the other hand, to the extent a 5′-terminal phosphate is not displayed, its presence is optional as well. Generally, there is no requirement for a 5′-terminal phosphate in compounds to be administered to mammalian cells, since a mammalian kinase would add a 5′-terminal phosphate in case of its absence.
[0239] In Example 2, the nucleobase sequences of antisense and sense strands of 27 specific oligomeric compounds as described herein are given. These are also the subject of specific embodiments disclosed further above. For antisense sequences, the construct number coincides with the SEQ ID NO in the attached sequence listing. For sense sequences, the number of the corresponding entry in the sequence listing is construct number ±250.
[0240] Tables 1a and 1 b below shows the sugar-phosphate backbone modifications of the antisense and sense strands of the 27 constructs.
TABLE-US-00001 TABLE 1a SEQ ID ID NO: Antisense strand modified P44as 591 [mU][#][mC][#][mU][mU][mC][mA][mA][mG][mU][mU][mA][mC][mA][fA][#]mA[#]mA[#]mG[#]mC[#]rA P46as 592 [mU][#][mA][#][mA][mA][mA][mG][mC][mA][mA][mA][mA][mC][mA][fG][#]mG[#]mU[#]mC[#]mU[#]rA P53as 593 [mU][#][mA][#][mC][mA][mA][mA][mA][mG][mC][mA][mA][mA][mA][fC][#]mA[#]mG[#]mG[#]mU[#]rC P29as 594 [mU][#][mG][#][mC][mA][mA][mA][mA][mC][mA][mG][mG][mU][mC][fU][#]mA[#]mG[#]mA[#]mA[#]rA P57as 595 [mU][#][mC][#][mA][mA][mA][mA][mG][mC][mA][mA][mA][mA][mC][fA][#]mG[#]mG[#]mU[#]mC[#]rU P52as 596 [mU][#][mA][#][mG][mA][mA][mU][mA][mA][mA][mU][mA][mU][mC][fU][#]mU[#]mC[#]mA[#]mA[#]rG P55as 597 [mU][#][mA][#][mA][mA][mG][mC][mA][mA][mA][mA][mC][mA][mG][fG][#]mU[#]mC[#]mU[#]mA[#]rG P232as 598 [mU][#][mU][#][mC][mU][mU][mC][mA][mA][mG][mU][mU][mA][mC][fA][#]mA[#]mA[#]mA[#]mG[#]rC P58as 599 [mU][#][mC][#][mA][mA][mG][mU][mU][mA][mC][mA][mA][mA][mA][fG][#]mC[#]mA[#]mA[#]mA[#]rA P36as 600 [mU][#][mC][#][mA][mA][mA][mA][mC][mA][mG][mG][mU][mC][mU][fA][#]mG[#]mA[#]mA[#]mA[#]rA P49as 601 [mU][#][mA][#][mU][mA][mA][mA][mU][mA][mU][mC][mU][mU][mC][fA][#]mA[#]mG[#]mU[#]mU[#]rA P233as 602 [mU][#][mU][#][mU][mA][mC][mA][mA][mA][mA][mG][mC][mA][mA][fA][#]mA[#]mC[#]mA[#]mG[#]rG P48as 603 [mU][#][mG][#][mU][mG][mA][mC][mA][mC][mA][mA][mA][mG][mC][fA][#]mG[#]mG[#]mU[#]mG[#]rC P28as 604 [mU][#][mU][#][mU][mC][mA][mA][mG][mU][mU][mA][mC][mA][mA][fA][#]mA[#]mG[#]mC[#]mA[#]rA P34as 605 [mU][#][mA][#][mA][mA][mU][mA][mU][mC][mU][mU][mC][mA][mA][fG][#]mU[#]mU[#]mA[#]mC[#]rA P31as 606 [mU][#][mA][#][mU][mA][mA][mA][mU][mG][mU][mC][mU][mG][mC][fU][#]mU[#]mG[#]mC[#]mU[#]rU P13as 607 [mU][#][mC][#][mC][mG][mA][mA][mU][mA][mA][mA][mC][mU][mC][fC][#]mA[#]mG[#]mG[#]mC[#]rC P35as 608 [mU][#][mG][#][mG][mA][mA][mC][mC][mA][mU][mU][mU][mU][mA][fA][#]mA[#]mG[#]mC[#]mU[#]rC P43as 609 [mU][#][mC][#][mC][mA][mG][mA][mA][mU][mA][mA][mA][mU][mA][fU][#]mC[#]mU[#]mU[#]mC[#]rA P127as 610 [mU][#][mA][#][mU][mA][mU][mC][mU][mU][mC][mA][mA][mG][mU][fU][#]mA[#]mC[#]mA[#]mA[#]rA P100as 611 [mU][#][mC][#][mU][mC][mA][mG][mU][mU][mC][mC][mU][mG][mC][fU][#]mG[#]mU[#]mG[#]mU[#]rG P76as 612 [mU][#][mC][#][mU][mA][mC][mA][mA][mA][mA][mC][mC][mC][mA][fG][#]mA[#]mA[#]mU[#]mA[#]rA P139as 613 [mU][#][mC][#][mA][mA][mA][mA][mG][mA][mU][mA][mA][mA][mU][fG][#]mU[#]mC[#]mU[#]mG[#]rC P21as 614 [mU][#][mU][#][mU][mC][mC][mG][mA][mA][mU][mA][mA][mA][mC][fU][#]mC[#]mC[#]mA[#]mG[#]rG P87as 615 [mU][#][mC][#][mU][mG][mG][mC][mU][mC][mA][mG][mU][mU][mC][fC][#]mU[#]mG[#]mC[#]mU[#]rG P77as 616 [mU][#][mC][#][mA][mG][mA][mC][mA][mG][mC][mA][mU][mC][mA][fU][#]mG[#]mG[#]mC[#]mU[#]rG P94as 617 [mU][#][mG][#][mG][mG][mA][mU][mU][mC][mC][mA][mU][mG][mC][fU][#]mC[#]mC[#]mU[#]mU[#]rG
TABLE-US-00002 TABLE 1b SEQ ID ID NO: Sense strand modified P44s 618 [mu][#][fU][#][fG][fU][mA][mA][mC][mu][mu][mG][mA][mA][#][mG][#][mA][#][3XGalNac] P46s 619 [mc][#][fU][#][fG][fU][mu][mu][mu][mG][mC][mu][mu][mU][#][mU][#][mA][#][3XGalNac] P53s 620 [mG][#][fU][#][fU][fU][mu][mG][mC][mu][mu][mu][mu][mG][#][mU][#][mA][#][3XGalNac] P29s 621 [mA][#][fG][#][fA][fC][mC][mu][mG][mu][mu][mu][mu][mG][#][mC][#][mA][#][3XGalNac] P57s 622 [mu][#][fG][#][fU][fU][mu][mu][mG][mC][mu][mu][mu][mU][#][mG][#][mA][#][3XGalNac] P52s 623 [mA][#][fG][#][fA][fU][mA][mu][mu][mu][mA][mu][mu][mC][#][mU][#][mA][#][3XGalNac] P55s 624 [mc][#][fc][#][fU][fG][mu][mu][mu][mu][mG][mC][mu][mU][#][mU][#][mA][#][3XGalNac] P232s 625 [mu][#][fG][#][fU][fA][mA][mC][mu][mu][mG][mA][mA][mG][#][mA][#][mA][#][3XGalNac] P58s 626 [mc][#][fU][#][fU][fU][mu][mG][mu][mA][mA][mC][mu][mU][#][mG][#][mA][#][3XGalNac] P36s 627 [mu][#][fA][#][fG][fA][mC][mC][mu][mG][mu][mu][mu][mU][#][mG][#][mA][#][3XGalNac] P49s 628 [mu][#][fG][#][fA][fA][mG][mA][mu][mA][mu][mu][mu][mA][#][mU][#][mA][#][3XGalNac] P233s 629 [mu][#][fU][#][fU][fG][mC][mu][mu][mu][mu][mG][mu][mA][#][mA][#][mA][#][3XGalNac] P48s 630 [mu][#][fG][#][fC][fU][mu][mu][mG][mu][mG][mu][mC][mA][#][mC][#][mA][#][3XGalNac] P28s 631 [mu][#][fU][#][fU][fG][mu][mA][mA][mC][mu][mu][mG][mA][#][mA][#][mA][#][3XGalNac] P34s 632 [mc][#][fU][#][fU][fG][mA][mA][mG][mA][mu][mA][mu][mU][#][mU][#][mA][#][3XGalNac] P31s 633 [mA][#][fG][#][fC][fA][mG][mA][mC][mA][mu][mu][mu][mA][#][mU][#][mA][#][3XGalNac] P13s 634 [mG][#][fG][#][fA][fG][mu][mu][mu][mA][mu][mu][mC][mG][#][mG][#][mA][#][3XGalNac] P35s 635 [mu][#][fU][#][fA][fA][mA][mA][mu][mG][mG][mu][mu][mC][#][mC][#][mA][#][3XGalNac] P43s 636 [mA][#][fU][#][fA][fU][mu][mu][mA][mu][mu][mC][mu][mG][#][mG][#][mA][#][3XGalNac] P127s 637 [mA][#][fA][#][fC][fU][mu][mG][mA][mA][mG][mA][mu][mA][#][mU][#][mA][#][3XGalNac] P100s 638 [mA][#][fG][#][fC][fA][mG][mG][mA][mA][mC][mu][mG][mA][#][mG][#][mA][#][3XGalNac] P76s 639 [mc][#][fU][#][fG][fG][mG][mu][mu][mu][mu][mG][mu][mA][#][mG][#][mA][#][3XGalNac] P139s 640 [mc][#][fA][#][fU][fU][mu][mA][mu][mC][mu][mu][mu][mU][#][mG][#][mA][#][3XGalNac] P21s 641 [mA][#][fG][#][fU][fU][mu][mA][mu][mu][mC][mG][mG][mA][#][mA][#][mA][#][3XGalNac] P87s 642 [mG][#][fG][#][fA][fA][mC][mu][mG][mA][mG][mC][mC][mA][#][mG][#][mA][#][3XGalNac] P77s 643 [mA][#][fU][#][fG][fA][mu][mG][mC][mu][mG][mu][mC][mU][#][mG][#][mA][#][3XGalNac] P94s 644 [mA][#][fG][#][fC][fA][mu][mG][mG][mA][mA][mu][mC][mC][#][mC][#][mA][#][3XGalNac]
[0241] Tables 2a to 2d below show nucleobase sequences and sugar-phosphate backbone modifications of antisense and sense strands of the 250 constructs selected in accordance with Example 1. The above-disclosed 27 oligomeric compounds have been selected from these 250 constructs. The numbering in Table 2a coincides with the number of the corresponding entry in the sequence listing. For Table 2c the following applies: entry number in the sequence listing=entry number in the Table+250.
TABLE-US-00003 TABLE 2a SEQ ID NO: 250 antisense nucleobase sequences 1 UGGCCUAUGAGGGUGCCGC 2 UGAAUAAACUCCAGGCCUA 3 UUAAACUCCAGGCCUAUGA 4 UCGAAUAAACUCCAGGCCU 5 UUCCGGCAGCAGAUGGCAA 6 UACUCCAGGCCUAUGAGGG 7 UCCUAUGAGGGUGCCGCUA 8 UAGGCCUAUGAGGGUGCCG 9 UUCCAGGCCUAUGAGGGUG 10 UGCUGGUCCUCAGGGAACC 11 UAAUAAACUCCAGGCCUAU 12 UCUGGAGCAGCUCAGCAGC 13 UCCGAAUAAACUCCAGGCC 14 UGGUCCUCAGGGAACCAGG 15 UUGGUCCUCAGGGAACCAG 16 UAUAAACUCCAGGCCUAUG 17 UCUCCAGGCCUAUGAGGGU 18 UCAGGCCUAUGAGGGUGCC 19 UGUCCUCAGGGAACCAGGC 20 UGCCUAUGAGGGUGCCGCU 21 UUUCCGAAUAAACUCCAGG 22 UGCAUGGCAGCAGGAAGCG 23 UGCUCCGGCAGCAGAUGGC 24 UGCCGGCUCCGGCAGCAGA 25 UUCCUCAGGGAACCAGGCC 26 UCUCCGGCAGCAGAUGGCA 27 UGCCACGUGGGCAGCAGCC 28 UUUCAAGUUACAAAAGCAA 29 UGCAAAACAGGUCUAGAAA 30 UACCCAGAAUAAAUAUCUU 31 UAUAAAUGUCUGCUUGCUU 32 UUCAAGUUACAAAAGCAAA 33 UAACAGAGAGGACAGACCC 34 UAAAUAUCUUCAAGUUACA 35 UGGAACCAUUUUAAAGCUC 36 UCAAAACAGGUCUAGAAAA 37 UAAAUGCUACAAAACCCAG 38 UCCAAAAGAUAAAUGUCUG 39 UAGCACCUGGCAAUGGCGU 40 UAGAAUCCUGCCUCCUUGG 41 UUGGAUCAGUCUCUGCCUC 42 UCCCAGAAUAAAUAUCUUC 43 UCCAGAAUAAAUAUCUUCA 44 UCUUCAAGUUACAAAAGCA 45 UAUGCUACAAAACCCAGAA 46 UAAAAGCAAAACAGGUCUA 47 UAAUAUCUUCAAGUUACAA 48 UGUGACACAAAGCAGGUGC 49 UAUAAAUAUCUUCAAGUUA 50 UAAUGCUACAAAACCCAGA 51 UCAAAGCAGGUGCUGCAGU 52 UAGAAUAAAUAUCUUCAAG 53 UACAAAAGCAAAACAGGUC 54 UACAAAACCCAGAAUAAAU 55 UAAAGCAAAACAGGUCUAG 56 UCGAAGUCGGUGACCAUGA 57 UCAAAAGCAAAACAGGUCU 58 UCAAGUUACAAAAGCAAAA 59 UCCUUGACUUUGCAUUCCA 60 UAAGCGUGGAUGCUGGCCU 61 UUAAAUGUCUGCUUGCUUG 62 UAACCAUUUUAAAGCUCAG 63 UACCAGGCCUCAUUGAUGA 64 UAAACCCAGAAUAAAUAUC 65 UGAACCAUUUUAAAGCUCA 66 UGAAUAAAUAUCUUCAAGU 67 UAAGAGGCUUGGCUUCAGA 68 UGAACCAGGCCUCAUUGAU 69 UCAGAAUAAAUAUCUUCAA 70 UAAGAAUCCUGCCUCCUUG 71 UAAAACAGGUCUAGAAAAG 72 UAGGAAGCGUGGAUGCUGG 73 UCACUGGUUGGGCUGACCU 74 UAGACAUGCAGGAUCUUGG 75 UCUAGGAGAUACACCUCCA 76 UCUACAAAACCCAGAAUAA 77 UCAGACAGCAUCAUGGCUG 78 UUAUGCUGGUGUCUAGGAG 79 UGAAACUGGAGCAGCUCAG 80 UAGGACAGACCCAAAAGAU 81 UCAAUGGCGUAGACACCCU 82 UCAGGUGCUGCAGUCGCUG 83 UCUGCCUCCUUGGUGGAGA 84 UAGUCGGUGACCAUGACCC 85 UCAGCCUGGCAUAGAGCAG 86 UCAGAGAGGACAGACCCAA 87 UCUGGCUCAGUUCCUGCUG 88 UGAGCUUCCUGGUCUGUGU 89 UAGGUGCUGCAGUCGCUGG 90 UCUGGCCUGUCUGUGGAAG 91 UACCGCCUGGAGCUGACGG 92 UCAAAAGCGUUGUGGGCCC 93 UCACAGCCUGGCAUAGAGC 94 UGGGAUUCCAUGCUCCUUG 95 UGUGACCAUGACCCUGCCC 96 UAGCAAAACAGGUCUAGAA 97 UCUGGCUCACUCCUCCAGG 98 UGAAGUGGAUCAGUCUCUG 99 UAUGCUGGUGUCUAGGAGA 100 UCUCAGUUCCUGCUGUGUG 101 UUACACCUCCACCAGGCUG 102 UAUCAUGGCUGCAAUGCCA 103 UACAGAGAGGACAGACCCA 104 UGAAGAGGCUUGGCUUCAG 105 UCCCUGCCCUCGAUUUCCC 106 UACCAGGAAGCCAGGAAGA 107 UGAGGGAGCUUCCUGGCAC 108 UACCAUUUUAAAGCUCAGC 109 UCACUUGCUGGCCUGUCUG 110 UGCCACUCAUCUUCACCAG 111 UUUGGCAGAGAAGUGGAUC 112 UAGUCCUCCUCGAUGUAGU 113 UCCUCUGGCUAGAUGCCAU 114 UGGAGCUGUGUGGACGCUG 115 UGAGAAGUGGAUCAGUCUC 116 UAGCAGAUGGCAACGGCUG 117 UAGGCCUCAUUGAUGACAU 118 UUGCAGUCGCUGGAGGCAC 119 UUGGGUCUCCUCCUUCAGC 120 UCGGCUCGGCAGACAGCAU 121 UUGACAUCUUUGGCAGAGA 122 UGAACGCAAGGCUAGCACC 123 UAUCUUUGGCAGAGAAGUG 124 UGGCAGGCAUCGUCCCGGA 125 UGGAACGCAAGGCUAGCAC 126 UGACACAAAGCAGGUGCUG 127 UAUAUCUUCAAGUUACAAA 128 UGUGCCCUUCCCUUGGCAG 129 UCAAUGCCAGCCACGUGGG 130 UGAGGCUUGGCUUCAGAGC 131 UGGAUCUUGGUGAGGUAUC 132 UCAACUGUGAUGACCUCGG 133 UAAAUGUCUGCUUGCUUGG 134 UAAACAGGUCUAGAAAAGU 135 UAAAGCGUUGUGGGCCCGG 136 UCAACAGAGAGGACAGACC 137 UCUCCACGGAUCCUUGGCG 138 UAGGACUGUGCAGGAGCUG 139 UCAAAAGAUAAAUGUCUGC 140 UAUCCUGCCUCCUUGGUGG 141 UCACAGCGGCCAAAGUUGG 142 UCAGUUCCUGCUGUGUGAG 143 UCUGGCAUAGAGCAGAGUA 144 UCCUCAUUGAUGACAUCUU 145 UAGUCGCCGUCCUCGUCCU 146 UUGGGAAGAAUCCUGCCUC 147 UGUGGGUGCUUGACGCCUG 148 UACACAAAGCAGGUGCUGC 149 UAGCAGGAAGCGUGGAUGC 150 UAUCAGUCUCUGCCUCAAC 151 UAGACAGCAUCAUGGCUGC 152 UUCAUGGCUGCAAUGCCAG 153 UACAGCCUGGCAUAGAGCA 154 UGGCAUAGAGCAGAGUAAA 155 UCUGGUUGGGCUGACCUCG 156 UAGACCCAAAAGAUAAAUG 157 UGGUCCACACAGCGGCCAA 158 UCCUCCACCAGGCUGCCUC 159 UAAAACAGCUGCCAACCUG 160 UGAGGACAGACCCAAAAGA 161 UUGUCUGCUUGCUUGGGUG 162 UAAGGCAACAGAGAGGACA 163 UGUGUCUAGGAGAUACACC 164 UGUGGAUCAGUCUCUGCCU 165 UAAACAGCUGCCAACCUGC 166 UCAGGCGGCUUGUGGGUGC 167 UGGAACCAGGCCUCAUUGA 168 UCUGCCUGGCUCACUCCUC 169 UAGAUGAGGGCCAUCAGCA 170 UCUUCCUGGUCUGUGUUCC 171 UACUUUGCAUUCCAGACCU 172 UUGGCUAGAUGCCAUCCAG 173 UUGGCUGCAAUGCCAGCCA 174 UGGGUGUGGGUGCUUGACG 175 UAAAAGCGUUGUGGGCCCG 176 UCACCAGGAAGCCAGGAAG 177 UGCCGGGAUUCCAUGCUCC 178 UCCAGCUCCUCGUAGUCGC 179 UCCCGCUGGUCCUCAGGGA 180 UUGCAAUGCCAGCCACGUG 181 UUGAUGACAUCUUUGGCAG 182 UGAGAUACACCUCCACCAG 183 UGGUGUGGGUGCUUGACGC 184 UCUGCCUCAACUCGGCCAG 185 UGAAGUCGGUGACCAUGAC 186 UGUCCUCGUCCUCCUGCGC 187 UCCAGCCUCACUGUUACCC 188 UGCUUUUCCGAAUAAACUC 189 UUGUGAGCUUGGCAGGCAC 190 UAGCGUGGAUGCUGGCCUC 191 UAAGACAGAGGAGUCCUCC 192 UGUCUGCUUGCUUGGGUGG 193 UGUAGCAGGCAGCACCUGG 194 UUGGAUGCUGGCCUCCCUG 195 UAAAAGAUAAAUGUCUGCU 196 UAGUCCUGCAAAACAGCUG 197 UCAGGAUCUUGGUGAGGUA 198 UAGCGGUGGAAGGUGGCUG 199 UUGGCAAUGGCGUAGACAC 200 UCAGAGGAGUCCUCCUCGA 201 UGGAGCAGCUCAGCAGCUC 202 UGUGUGAGCUUGGCAGGCA 203 UCAGCACCUGGCAAUGGCG 204 UUCCCAGCCUCACUGUUAC 205 UGAGAAACUGGAGCAGCUC 206 UAGAGAAGUGGAUCAGUCU 207 UGGUCGCCACUCAUCUUCA 208 UGACCAGCUGGCUUUUCCG 209 UCAUGCAGGAUCUUGGUGA 210 UAGCGGCCAAAGUUGGUCC 211 UCAGCCUGUGAGGACGUGG 212 UGAGCUGUGUGGACGCUGC 213 UGGUAGCAGGCAGCACCUG 214 UUGAGCUCCGGCUCGGCAG 215 UGUCUAGGAGAUACACCUC 216 UGGAAGCGGGUCCCGUCCU 217 UGCUGUGUGAGCUUGGCAG 218 UACCAGCUGGCUUUUCCGA 219 UGCAAAGAGGUCCACACAG 220 UAGGAGACCUAGAGGCCGU 221 UGUCCUGCAAAACAGCUGC 222 UGCACCACCACGUAGGUGC 223 UACUCAAGGGCCAGGCCAG 224 UCCAUUUUAAAGCUCAGCC 225 UAGCGUUGUGGGCCCGGCA 226 UGGCAGAGAAGUGGAUCAG 227 UGAAACCUUCUAGGGUGUG 228 UAGCGGUGACCAGCACGAC 229 UGCAGUCGCUGGAGGCACC 230 UAAAACCCAGAAUAAAUAU 231 UAAUGGCGUAGACACCCUC 232 UUCUUCAAGUUACAAAAGC 233 UUUACAAAAGCAAAACAGG 234 UAUCUUCAAGUUACAAAAG 235 UCUGGUGUCUAGGAGAUAC 236 UAGUGCGCUCUGACUGCGA 237 UUGUCACACUUGCUGGCCU 238 UACAGAGGAGUCCUCCUCG 239 UGUUACAAAAGCAAAACAG 240 UAAUCCUGCCUCCUUGGUG 241 UGUGGAAGGUGGCUGUGGU 242 UGGAGCGGGUUGGCUGAGA 243 UUCGCCACUCAUCUUCACC 244 UAGAGGAGUCCUCCUCGAU 245 UGAGCUCCGGCUCGGCAGA 246 UAACUGUGAUGACCUCGGG 247 UGAUACACCUCCACCAGGC 248 UUGGCAUAGAGCAGAGUAA 249 UGCAGCUCAGCAGCUCCUC 250 UAUUGAUGACAUCUUUGGC
TABLE-US-00004 TABLE 2b SEQ ID # NO: 250 modified antisense strands 1 645 PmU.fG.mG.fC.mC.fU.mA.fU.mG.fA.mG.fG.mG.fU.mG.fC.mC.fG.mC 2 646 PmU.fG.mA.fA.mU.fA.mA.fA.mC.fU.mC.fC.mA.fG.mG.fC.mC.fU.mA 3 647 PmU.fU.mA.fA.mA.fC.mU.fC.mC.fA.mG.fG.mC.fC.mU.fA.mU.fG.mA 4 648 PmU.fC.mG.fA.mA.fU.mA.fA.mA.fC.mU.fC.mC.fA.mG.fG.mC.fC.mU 5 649 PmU.fU.mC.fC.mG.fG.mC.fA.mG.fC.mA.fG.mA.fU.mG.fG.mC.fA.mA 6 650 PmU.fA.mC.fU.mC.fC.mA.fG.mG.fC.mC.fU.mA.fU.mG.fA.mG.fG.mG 7 651 PmU.fC.mC.fU.mA.fU.mG.fA.mG.fG.mG.fU.mG.fC.mC.fG.mC.fU.mA 8 652 PmU.fA.mG.fG.mC.fC.mU.fA.mU.fG.mA.fG.mG.fG.mU.fG.mC.fC.mG 9 653 PmU.fU.mC.fC.mA.fG.mG.fC.mC.fU.mA.fU.mG.fA.mG.fG.mG.fU.mG 10 654 PmU.fG.mC.fU.mG.fG.mU.fC.mC.fU.mC.fA.mG.fG.mG.fA.mA.fC.mC 11 655 PmU.fA.mA.fU.mA.fA.mA.fC.mU.fC.mC.fA.mG.fG.mC.fC.mU.fA.mU 12 656 PmU.fC.mU.fG.mG.fA.mG.fC.mA.fG.mC.fU.mC.fA.mG.fC.mA.fG.mC 13 657 PmU.fC.mC.fG.mA.fA.mU.fA.mA.fA.mC.fU.mC.fC.mA.fG.mG.fC.mC 14 658 PmU.fG.mG.fU.mC.fC.mU.fC.mA.fG.mG.fG.mA.fA.mC.fC.mA.fG.mG 15 659 PmU.fU.mG.fG.mU.fC.mC.fU.mC.fA.mG.fG.mG.fA.mA.fC.mC.fA.mG 16 660 PmU.fA.mU.fA.mA.fA.mC.fU.mC.fC.mA.fG.mG.fC.mC.fU.mA.fU.mG 17 661 PmU.fC.mU.fC.mC.fA.mG.fG.mC.fC.mU.fA.mU.fG.mA.fG.mG.fG.mU 18 662 PmU.fC.mA.fG.mG.fC.mC.fU.mA.fU.mG.fA.mG.fG.mG.fU.mG.fC.mC 19 663 PmU.fG.mU.fC.mC.fU.mC.fA.mG.fG.mG.fA.mA.fC.mC.fA.mG.fG.mC 20 664 PmU.fG.mC.fC.mU.fA.mU.fG.mA.fG.mG.fG.mU.fG.mC.fC.mG.fC.mU 21 665 PmU.fU.mU.fC.mC.fG.mA.fA.mU.fA.mA.fA.mC.fU.mC.fC.mA.fG.mG 22 666 PmU.fG.mC.fA.mU.fG.mG.fC.mA.fG.mC.fA.mG.fG.mA.fA.mG.fC.mG 23 667 PmU.fG.mC.fU.mC.fC.mG.fG.mC.fA.mG.fC.mA.fG.mA.fU.mG.fG.mC 24 668 PmU.fG.mC.fC.mG.fG.mC.fU.mC.fC.mG.fG.mC.fA.mG.fC.mA.fG.mA 25 669 PmU.fU.mC.fC.mU.fC.mA.fG.mG.fG.mA.fA.mC.fC.mA.fG.mG.fC.mC 26 670 PmU.fC.mU.fC.mC.fG.mG.fC.mA.fG.mC.fA.mG.fA.mU.fG.mG.fC.mA 27 671 PmU.fG.mC.fC.mA.fC.mG.fU.mG.fG.mG.fC.mA.fG.mC.fA.mG.fC.mC 28 672 PmU.fU.mU.fC.mA.fA.mG.fU.mU.fA.mC.fA.mA.fA.mA.fG.mC.fA.mA 29 673 PmU.fG.mC.fA.mA.fA.mA.fC.mA.fG.mG.fU.mC.fU.mA.fG.mA.fA.mA 30 674 PmU.fA.mC.fC.mC.fA.mG.fA.mA.fU.mA.fA.mA.fU.mA.fU.mC.fU.mU 31 675 PmU.fA.mU.fA.mA.fA.mU.fG.mU.fC.mU.fG.mC.fU.mU.fG.mC.fU.mU 32 676 PmU.fU.mC.fA.mA.fG.mU.fU.mA.fC.mA.fA.mA.fA.mG.fC.mA.fA.mA 33 677 PmU.fA.mA.fC.mA.fG.mA.fG.mA.fG.mG.fA.mC.fA.mG.fA.mC.fC.mC 34 678 PmU.fA.mA.fA.mU.fA.mU.fC.mU.fU.mC.fA.mA.fG.mU.fU.mA.fC.mA 35 679 PmU.fG.mG.fA.mA.fC.mC.fA.mU.fU.mU.fU.mA.fA.mA.fG.mC.fU.mC 36 680 PmU.fC.mA.fA.mA.fA.mC.fA.mG.fG.mU.fC.mU.fA.mG.fA.mA.fA.mA 37 681 PmU.fA.mA.fA.mU.fG.mC.fU.mA.fC.mA.fA.mA.fA.mC.fC.mC.fA.mG 38 682 PmU.fC.mC.fA.mA.fA.mA.fG.mA.fU.mA.fA.mA.fU.mG.fU.mC.fU.mG 39 683 PmU.fA.mG.fC.mA.fC.mC.fU.mG.fG.mC.fA.mA.fU.mG.fG.mC.fG.mU 40 684 PmU.fA.mG.fA.mA.fU.mC.fC.mU.fG.mC.fC.mU.fC.mC.fU.mU.fG.mG 41 685 PmU.fU.mG.fG.mA.fU.mC.fA.mG.fU.mC.fU.mC.fU.mG.fC.mC.fU.mC 42 686 PmU.fC.mC.fC.mA.fG.mA.fA.mU.fA.mA.fA.mU.fA.mU.fC.mU.fU.mC 43 687 PmU.fC.mC.fA.mG.fA.mA.fU.mA.fA.mA.fU.mA.fU.mC.fU.mU.fC.mA 44 688 PmU.fC.mU.fU.mC.fA.mA.fG.mU.fU.mA.fC.mA.fA.mA.fA.mG.fC.mA 45 689 PmU.fA.mU.fG.mC.fU.mA.fC.mA.fA.mA.fA.mC.fC.mC.fA.mG.fA.mA 46 690 PmU.fA.mA.fA.mA.fG.mC.fA.mA.fA.mA.fC.mA.fG.mG.fU.mC.fU.mA 47 691 PmU.fA.mA.fU.mA.fU.mC.fU.mU.fC.mA.fA.mG.fU.mU.fA.mC.fA.mA 48 692 PmU.fG.mU.fG.mA.fC.mA.fC.mA.fA.mA.fG.mC.fA.mG.fG.mU.fG.mC 49 693 PmU.fA.mU.fA.mA.fA.mU.fA.mU.fC.mU.fU.mC.fA.mA.fG.mU.fU.mA 50 694 PmU.fA.mA.fU.mG.fC.mU.fA.mC.fA.mA.fA.mA.fC.mC.fC.mA.fG.mA 51 695 PmU.fC.mA.fA.mA.fG.mC.fA.mG.fG.mU.fG.mC.fU.mG.fC.mA.fG.mU 52 696 PmU.fA.mG.fA.mA.fU.mA.fA.mA.fU.mA.fU.mC.fU.mU.fC.mA.fA.mG 53 697 PmU.fA.mC.fA.mA.fA.mA.fG.mC.fA.mA.fA.mA.fC.mA.fG.mG.fU.mC 54 698 PmU.fA.mC.fA.mA.fA.mA.fC.mC.fC.mA.fG.mA.fA.mU.fA.mA.fA.mU 55 699 PmU.fA.mA.fA.mG.fC.mA.fA.mA.fA.mC.fA.mG.fG.mU.fC.mU.fA.mG 56 700 PmU.fC.mG.fA.mA.fG.mU.fC.mG.fG.mU.fG.mA.fC.mC.fA.mU.fG.mA 57 701 PmU.fC.mA.fA.mA.fA.mG.fC.mA.fA.mA.fA.mC.fA.mG.fG.mU.fC.mU 58 702 PmU.fC.mA.fA.mG.fU.mU.fA.mC.fA.mA.fA.mA.fG.mC.fA.mA.fA.mA 59 703 PmU.fC.mC.fU.mU.fG.mA.fC.mU.fU.mU.fG.mC.fA.mU.fU.mC.fC.mA 60 704 PmU.fA.mA.fG.mC.fG.mU.fG.mG.fA.mU.fG.mC.fU.mG.fG.mC.fC.mU 61 705 PmU.fU.mA.fA.mA.fU.mG.fU.mC.fU.mG.fC.mU.fU.mG.fC.mU.fU.mG 62 706 PmU.fA.mA.fC.mC.fA.mU.fU.mU.fU.mA.fA.mA.fG.mC.fU.mC.fA.mG 63 707 PmU.fA.mC.fC.mA.fG.mG.fC.mC.fU.mC.fA.mU.fU.mG.fA.mU.fG.mA 64 708 PmU.fA.mA.fA.mC.fC.mC.fA.mG.fA.mA.fU.mA.fA.mA.fU.mA.fU.mC 65 709 PmU.fG.mA.fA.mC.fC.mA.fU.mU.fU.mU.fA.mA.fA.mG.fC.mU.fC.mA 66 710 PmU.fG.mA.fA.mU.fA.mA.fA.mU.fA.mU.fC.mU.fU.mC.fA.mA.fG.mU 67 711 PmU.fA.mA.fG.mA.fG.mG.fC.mU.fU.mG.fG.mC.fU.mU.fC.mA.fG.mA 68 712 PmU.fG.mA.fA.mC.fC.mA.fG.mG.fC.mC.fU.mC.fA.mU.fU.mG.fA.mU 69 713 PmU.fC.mA.fG.mA.fA.mU.fA.mA.fA.mU.fA.mU.fC.mU.fU.mC.fA.mA 70 714 PmU.fA.mA.fG.mA.fA.mU.fC.mC.fU.mG.fC.mC.fU.mC.fC.mU.fU.mG 71 715 PmU.fA.mA.fA.mA.fC.mA.fG.mG.fU.mC.fU.mA.fG.mA.fA.mA.fA.mG 72 716 PmU.fA.mG.fG.mA.fA.mG.fC.mG.fU.mG.fG.mA.fU.mG.fC.mU.fG.mG 73 717 PmU.fC.mA.fC.mU.fG.mG.fU.mU.fG.mG.fG.mC.fU.mG.fA.mC.fC.mU 74 718 PmU.fA.mG.fA.mC.fA.mU.fG.mC.fA.mG.fG.mA.fU.mC.fU.mU.fG.mG 75 719 PmU.fC.mU.fA.mG.fG.mA.fG.mA.fU.mA.fC.mA.fC.mC.fU.mC.fC.mA 76 720 PmU.fC.mU.fA.mC.fA.mA.fA.mA.fC.mC.fC.mA.fG.mA.fA.mU.fA.mA 77 721 PmU.fC.mA.fG.mA.fC.mA.fG.mC.fA.mU.fC.mA.fU.mG.fG.mC.fU.mG 78 722 PmU.fU.mA.fU.mG.fC.mU.fG.mG.fU.mG.fU.mC.fU.mA.fG.mG.fA.mG 79 723 PmU.fG.mA.fA.mA.fC.mU.fG.mG.fA.mG.fC.mA.fG.mC.fU.mC.fA.mG 80 724 PmU.fA.mG.fG.mA.fC.mA.fG.mA.fC.mC.fC.mA.fA.mA.fA.mG.fA.mU 81 725 PmU.fC.mA.fA.mU.fG.mG.fC.mG.fU.mA.fG.mA.fC.mA.fC.mC.fC.mU 82 726 PmU.fC.mA.fG.mG.fU.mG.fC.mU.fG.mC.fA.mG.fU.mC.fG.mC.fU.mG 83 727 PmU.fC.mU.fG.mC.fC.mU.fC.mC.fU.mU.fG.mG.fU.mG.fG.mA.fG.mA 84 728 PmU.fA.mG.fU.mC.fG.mG.fU.mG.fA.mC.fC.mA.fU.mG.fA.mC.fC.mC 85 729 PmU.fC.mA.fG.mC.fC.mU.fG.mG.fC.mA.fU.mA.fG.mA.fG.mC.fA.mG 86 730 PmU.fC.mA.fG.mA.fG.mA.fG.mG.fA.mC.fA.mG.fA.mC.fC.mC.fA.mA 87 731 PmU.fC.mU.fG.mG.fC.mU.fC.mA.fG.mU.fU.mC.fC.mU.fG.mC.fU.mG 88 732 PmU.fG.mA.fG.mC.fU.mU.fC.mC.fU.mG.fG.mU.fC.mU.fG.mU.fG.mU 89 733 PmU.fA.mG.fG.mU.fG.mC.fU.mG.fC.mA.fG.mU.fC.mG.fC.mU.fG.mG 90 734 PmU.fC.mU.fG.mG.fC.mC.fU.mG.fU.mC.fU.mG.fU.mG.fG.mA.fA.mG 91 735 PmU.fA.mC.fC.mG.fC.mC.fU.mG.fG.mA.fG.mC.fU.mG.fA.mC.fG.mG 92 736 PmU.fC.mA.fA.mA.fA.mG.fC.mG.fU.mU.fG.mU.fG.mG.fG.mC.fC.mC 93 737 PmU.fC.mA.fC.mA.fG.mC.fC.mU.fG.mG.fC.mA.fU.mA.fG.mA.fG.mC 94 738 PmU.fG.mG.fG.mA.fU.mU.fC.mC.fA.mU.fG.mC.fU.mC.fC.mU.fU.mG 95 739 PmU.fG.mU.fG.mA.fC.mC.fA.mU.fG.mA.fC.mC.fC.mU.fG.mC.fC.mC 96 740 PmU.fA.mG.fC.mA.fA.mA.fA.mC.fA.mG.fG.mU.fC.mU.fA.mG.fA.mA 97 741 PmU.fC.mU.fG.mG.fC.mU.fC.mA.fC.mU.fC.mC.fU.mC.fC.mA.fG.mG 98 742 PmU.fG.mA.fA.mG.fU.mG.fG.mA.fU.mC.fA.mG.fU.mC.fU.mC.fU.mG 99 743 PmU.fA.mU.fG.mC.fU.mG.fG.mU.fG.mU.fC.mU.fA.mG.fG.mA.fG.mA 100 744 PmU.fC.mU.fC.mA.fG.mU.fU.mC.fC.mU.fG.mC.fU.mG.fU.mG.fU.mG 101 745 PmU.fU.mA.fC.mA.fC.mC.fU.mC.fC.mA.fC.mC.fA.mG.fG.mC.fU.mG 102 746 PmU.fA.mU.fC.mA.fU.mG.fG.mC.fU.mG.fC.mA.fA.mU.fG.mC.fC.mA 103 747 PmU.fA.mC.fA.mG.fA.mG.fA.mG.fG.mA.fC.mA.fG.mA.fC.mC.fC.mA 104 748 PmU.fG.mA.fA.mG.fA.mG.fG.mC.fU.mU.fG.mG.fC.mU.fU.mC.fA.mG 105 749 PmU.fC.mC.fC.mU.fG.mC.fC.mC.fU.mC.fG.mA.fU.mU.fU.mC.fC.mC 106 750 PmU.fA.mC.fC.mA.fG.mG.fA.mA.fG.mC.fC.mA.fG.mG.fA.mA.fG.mA 107 751 PmU.fG.mA.fG.mG.fG.mA.fG.mC.fU.mU.fC.mC.fU.mG.fG.mC.fA.mC 108 752 PmU.fA.mC.fC.mA.fU.mU.fU.mU.fA.mA.fA.mG.fC.mU.fC.mA.fG.mC 109 753 PmU.fC.mA.fC.mU.fU.mG.fC.mU.fG.mG.fC.mC.fU.mG.fU.mC.fU.mG 110 754 PmU.fG.mC.fC.mA.fC.mU.fC.mA.fU.mC.fU.mU.fC.mA.fC.mC.fA.mG 111 755 PmU.fU.mU.fG.mG.fC.mA.fG.mA.fG.mA.fA.mG.fU.mG.fG.mA.fU.mC 112 756 PmU.fA.mG.fU.mC.fC.mU.fC.mC.fU.mC.fG.mA.fU.mG.fU.mA.fG.mU 113 757 PmU.fC.mC.fU.mC.fU.mG.fG.mC.fU.mA.fG.mA.fU.mG.fC.mC.fA.mU 114 758 PmU.fG.mG.fA.mG.fC.mU.fG.mU.fG.mU.fG.mG.fA.mC.fG.mC.fU.mG 115 759 PmU.fG.mA.fG.mA.fA.mG.fU.mG.fG.mA.fU.mC.fA.mG.fU.mC.fU.mC 116 760 PmU.fA.mG.fC.mA.fG.mA.fU.mG.fG.mC.fA.mA.fC.mG.fG.mC.fU.mG 117 761 PmU.fA.mG.fG.mC.fC.mU.fC.mA.fU.mU.fG.mA.fU.mG.fA.mC.fA.mU 118 762 PmU.fU.mG.fC.mA.fG.mU.fC.mG.fC.mU.fG.mG.fA.mG.fG.mC.fA.mC 119 763 PmU.fU.mG.fG.mG.fU.mC.fU.mC.fC.mU.fC.mC.fU.mU.fC.mA.fG.mC 120 764 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PmU.fA.mA.fA.mA.fG.mA.fU.mA.fA.mA.fU.mG.fU.mC.fU.mG.fC.mU 196 840 PmU.fA.mG.fU.mC.fC.mU.fG.mC.fA.mA.fA.mA.fC.mA.fG.mC.fU.mG 197 841 PmU.fC.mA.fG.mG.fA.mU.fC.mU.fU.mG.fG.mU.fG.mA.fG.mG.fU.mA 198 842 PmU.fA.mG.fC.mG.fG.mU.fG.mG.fA.mA.fG.mG.fU.mG.fG.mC.fU.mG 199 843 PmU.fU.mG.fG.mC.fA.mA.fU.mG.fG.mC.fG.mU.fA.mG.fA.mC.fA.mC 200 844 PmU.fC.mA.fG.mA.fG.mG.fA.mG.fU.mC.fC.mU.fC.mC.fU.mC.fG.mA 201 845 PmU.fG.mG.fA.mG.fC.mA.fG.mC.fU.mC.fA.mG.fC.mA.fG.mC.fU.mC 202 846 PmU.fG.mU.fG.mU.fG.mA.fG.mC.fU.mU.fG.mG.fC.mA.fG.mG.fC.mA 203 847 PmU.fC.mA.fG.mC.fA.mC.fC.mU.fG.mG.fC.mA.fA.mU.fG.mG.fC.mG 204 848 PmU.fU.mC.fC.mC.fA.mG.fC.mC.fU.mC.fA.mC.fU.mG.fU.mU.fA.mC 205 849 PmU.fG.mA.fG.mA.fA.mA.fC.mU.fG.mG.fA.mG.fC.mA.fG.mC.fU.mC 206 850 PmU.fA.mG.fA.mG.fA.mA.fG.mU.fG.mG.fA.mU.fC.mA.fG.mU.fC.mU 207 851 PmU.fG.mG.fU.mC.fG.mC.fC.mA.fC.mU.fC.mA.fU.mC.fU.mU.fC.mA 208 852 PmU.fG.mA.fC.mC.fA.mG.fC.mU.fG.mG.fC.mU.fU.mU.fU.mC.fC.mG 209 853 PmU.fC.mA.fU.mG.fC.mA.fG.mG.fA.mU.fC.mU.fU.mG.fG.mU.fG.mA 210 854 PmU.fA.mG.fC.mG.fG.mC.fC.mA.fA.mA.fG.mU.fU.mG.fG.mU.fC.mC 211 855 PmU.fC.mA.fG.mC.fC.mU.fG.mU.fG.mA.fG.mG.fA.mC.fG.mU.fG.mG 212 856 PmU.fG.mA.fG.mC.fU.mG.fU.mG.fU.mG.fG.mA.fC.mG.fC.mU.fG.mC 213 857 PmU.fG.mG.fU.mA.fG.mC.fA.mG.fG.mC.fA.mG.fC.mA.fC.mC.fU.mG 214 858 PmU.fU.mG.fA.mG.fC.mU.fC.mC.fG.mG.fC.mU.fC.mG.fG.mC.fA.mG 215 859 PmU.fG.mU.fC.mU.fA.mG.fG.mA.fG.mA.fU.mA.fC.mA.fC.mC.fU.mC 216 860 PmU.fG.mG.fA.mA.fG.mC.fG.mG.fG.mU.fC.mC.fC.mG.fU.mC.fC.mU 217 861 PmU.fG.mC.fU.mG.fU.mG.fU.mG.fA.mG.fC.mU.fU.mG.fG.mC.fA.mG 218 862 PmU.fA.mC.fC.mA.fG.mC.fU.mG.fG.mC.fU.mU.fU.mU.fC.mC.fG.mA 219 863 PmU.fG.mC.fA.mA.fA.mG.fA.mG.fG.mU.fC.mC.fA.mC.fA.mC.fA.mG 220 864 PmU.fA.mG.fG.mA.fG.mA.fC.mC.fU.mA.fG.mA.fG.mG.fC.mC.fG.mU 221 865 PmU.fG.mU.fC.mC.fU.mG.fC.mA.fA.mA.fA.mC.fA.mG.fC.mU.fG.mC 222 866 PmU.fG.mC.fA.mC.fC.mA.fC.mC.fA.mC.fG.mU.fA.mG.fG.mU.fG.mC 223 867 PmU.fA.mC.fU.mC.fA.mA.fG.mG.fG.mC.fC.mA.fG.mG.fC.mC.fA.mG 224 868 PmU.fC.mC.fA.mU.fU.mU.fU.mA.fA.mA.fG.mC.fU.mC.fA.mG.fC.mC 225 869 PmU.fA.mG.fC.mG.fU.mU.fG.mU.fG.mG.fG.mC.fC.mC.fG.mG.fC.mA 226 870 PmU.fG.mG.fC.mA.fG.mA.fG.mA.fA.mG.fU.mG.fG.mA.fU.mC.fA.mG 227 871 PmU.fG.mA.fA.mA.fC.mC.fU.mU.fC.mU.fA.mG.fG.mG.fU.mG.fU.mG 228 872 PmU.fA.mG.fC.mG.fG.mU.fG.mA.fC.mC.fA.mG.fC.mA.fC.mG.fA.mC 229 873 PmU.fG.mC.fA.mG.fU.mC.fG.mC.fU.mG.fG.mA.fG.mG.fC.mA.fC.mC 230 874 PmU.fA.mA.fA.mA.fC.mC.fC.mA.fG.mA.fA.mU.fA.mA.fA.mU.fA.mU 231 875 PmU.fA.mA.fU.mG.fG.mC.fG.mU.fA.mG.fA.mC.fA.mC.fC.mC.fU.mC 232 876 PmU.fU.mC.fU.mU.fC.mA.fA.mG.fU.mU.fA.mC.fA.mA.fA.mA.fG.mC 233 877 PmU.fU.mU.fA.mC.fA.mA.fA.mA.fG.mC.fA.mA.fA.mA.fC.mA.fG.mG 234 878 PmU.fA.mU.fC.mU.fU.mC.fA.mA.fG.mU.fU.mA.fC.mA.fA.mA.fA.mG 235 879 PmU.fC.mU.fG.mG.fU.mG.fU.mC.fU.mA.fG.mG.fA.mG.fA.mU.fA.mC 236 880 PmU.fA.mG.fU.mG.fC.mG.fC.mU.fC.mU.fG.mA.fC.mU.fG.mC.fG.mA 237 881 PmU.fU.mG.fU.mC.fA.mC.fA.mC.fU.mU.fG.mC.fU.mG.fG.mC.fC.mU 238 882 PmU.fA.mC.fA.mG.fA.mG.fG.mA.fG.mU.fC.mC.fU.mC.fC.mU.fC.mG 239 883 PmU.fG.mU.fU.mA.fC.mA.fA.mA.fA.mG.fC.mA.fA.mA.fA.mC.fA.mG 240 884 PmU.fA.mA.fU.mC.fC.mU.fG.mC.fC.mU.fC.mC.fU.mU.fG.mG.fU.mG 241 885 PmU.fG.mU.fG.mG.fA.mA.fG.mG.fU.mG.fG.mC.fU.mG.fU.mG.fG.mU 242 886 PmU.fG.mG.fA.mG.fC.mG.fG.mG.fU.mU.fG.mG.fC.mU.fG.mA.fG.mA 243 887 PmU.fU.mC.fG.mC.fC.mA.fC.mU.fC.mA.fU.mC.fU.mU.fC.mA.fC.mC 244 888 PmU.fA.mG.fA.mG.fG.mA.fG.mU.fC.mC.fU.mC.fC.mU.fC.mG.fA.mU 245 889 PmU.fG.mA.fG.mC.fU.mC.fC.mG.fG.mC.fU.mC.fG.mG.fC.mA.fG.mA 246 890 PmU.fA.mA.fC.mU.fG.mU.fG.mA.fU.mG.fA.mC.fC.mU.fC.mG.fG.mG 247 891 PmU.fG.mA.fU.mA.fC.mA.fC.mC.fU.mC.fC.mA.fC.mC.fA.mG.fG.mC 248 892 PmU.fU.mG.fG.mC.fA.mU.fA.mG.fA.mG.fC.mA.fG.mA.fG.mU.fA.mA 249 893 PmU.fG.mC.fA.mG.fC.mU.fC.mA.fG.mC.fA.mG.fC.mU.fC.mC.fU.mC 250 894 PmU.fA.mU.fU.mG.fA.mU.fG.mA.fC.mA.fU.mC.fU.mU.fU.mG.fG.mC
TABLE-US-00005 TABLE 2c SEQ ID # NO: 250 sense nucleobase sequences 1 251 CACCCUCAUAGGCCA 2 252 CCUGGAGUUUAUUCA 3 253 AGGCCUGGAGUUUAA 4 254 CUGGAGUUUAUUCGA 5 255 CAUCUGCUGCCGGAA 6 256 CAUAGGCCUGGAGUA 7 257 GGCACCCUCAUAGGA 8 258 ACCCUCAUAGGCCUA 9 259 CUCAUAGGCCUGGAA 10 260 CCCUGAGGACCAGCA 11 261 GCCUGGAGUUUAUUA 12 262 CUGAGCUGCUCCAGA 13 263 UGGAGUUUAUUCGGA 14 264 GUUCCCUGAGGACCA 15 265 UUCCCUGAGGACCAA 16 266 GGCCUGGAGUUUAUA 17 267 UCAUAGGCCUGGAGA 18 268 CCCUCAUAGGCCUGA 19 269 GGUUCCCUGAGGACA 20 270 GCACCCUCAUAGGCA 21 271 GAGUUUAUUCGGAAA 22 272 UCCUGCUGCCAUGCA 23 273 UCUGCUGCCGGAGCA 24 274 CUGCCGGAGCCGGCA 25 275 UGGUUCCCUGAGGAA 26 276 AUCUGCUGCCGGAGA 27 277 GCUGCCCACGUGGCA 28 278 UUUUGUAACUUGAAA 29 279 UAGACCUGUUUUGCA 30 280 UAUUUAUUCUGGGUA 31 281 AAGCAGACAUUUAUA 32 282 CUUUUGUAACUUGAA 33 283 CUGUCCUCUCUGUUA 34 284 ACUUGAAGAUAUUUA 35 285 UUUAAAAUGGUUCCA 36 286 CUAGACCUGUUUUGA 37 287 GUUUUGUAGCAUUUA 38 288 CAUUUAUCUUUUGGA 39 289 CAUUGCCAGGUGCUA 40 290 GGAGGCAGGAUUCUA 41 291 CAGAGACUGAUCCAA 42 292 AUAUUUAUUCUGGGA 43 293 GAUAUUUAUUCUGGA 44 294 UUUGUAACUUGAAGA 45 295 GGGUUUUGUAGCAUA 46 296 CCUGUUUUGCUUUUA 47 297 AACUUGAAGAUAUUA 48 298 CUGCUUUGUGUCACA 49 299 UUGAAGAUAUUUAUA 50 300 GGUUUUGUAGCAUUA 51 301 CAGCACCUGCUUUGA 52 302 AAGAUAUUUAUUCUA 53 303 UGUUUUGCUUUUGUA 54 304 AUUCUGGGUUUUGUA 55 305 ACCUGUUUUGCUUUA 56 306 GGUCACCGACUUCGA 57 307 CUGUUUUGCUUUUGA 58 308 GCUUUUGUAACUUGA 59 309 AUGCAAAGUCAAGGA 60 310 CAGCAUCCACGCUUA 61 311 CAAGCAGACAUUUAA 62 312 GCUUUAAAAUGGUUA 63 313 CAAUGAGGCCUGGUA 64 314 UUUAUUCUGGGUUUA 65 315 CUUUAAAAUGGUUCA 66 316 GAAGAUAUUUAUUCA 67 317 AAGCCAAGCCUCUUA 68 318 AUGAGGCCUGGUUCA 69 319 AGAUAUUUAUUCUGA 70 320 GAGGCAGGAUUCUUA 71 321 UCUAGACCUGUUUUA 72 322 CAUCCACGCUUCCUA 73 323 CAGCCCAACCAGUGA 74 324 GAUCCUGCAUGUCUA 75 325 GGUGUAUCUCCUAGA 76 326 UCUGGGUUUUGUAGA 77 327 CAUGAUGCUGUCUGA 78 328 UAGACACCAGCAUAA 79 329 GCUGCUCCAGUUUCA 80 330 UUUGGGUCUGUCCUA 81 331 UGUCUACGCCAUUGA 82 332 GACUGCAGCACCUGA 83 333 CACCAAGGAGGCAGA 84 334 CAUGGUCACCGACUA 85 335 UCUAUGCCAGGCUGA 86 336 GUCUGUCCUCUCUGA 87 337 AGGAACUGAGCCAGA 88 338 AGACCAGGAAGCUCA 89 339 CGACUGCAGCACCUA 90 340 CACAGACAGGCCAGA 91 341 CAGCUCCAGGCGGUA 92 342 CCACAACGCUUUUGA 93 343 UAUGCCAGGCUGUGA 94 344 GAGCAUGGAAUCCCA 95 345 AGGGUCAUGGUCACA 96 346 AGACCUGUUUUGCUA 97 347 GAGGAGUGAGCCAGA 98 348 GACUGAUCCACUUCA 99 349 CUAGACACCAGCAUA 100 350 CAGCAGGAACUGAGA 101 351 CUGGUGGAGGUGUAA 102 352 AUUGCAGCCAUGAUA 103 353 UCUGUCCUCUCUGUA 104 354 AGCCAAGCCUCUUCA 105 355 AAUCGAGGGCAGGGA 106 356 CCUGGCUUCCUGGUA 107 357 CAGGAAGCUCCCUCA 108 358 AGCUUUAAAAUGGUA 109 359 CAGGCCAGCAAGUGA 110 360 UGAAGAUGAGUGGCA 111 361 CACUUCUCUGCCAAA 112 362 CAUCGAGGAGGACUA 113 363 CAUCUAGCCAGAGGA 114 364 GUCCACACAGCUCCA 115 365 CUGAUCCACUUCUCA 116 366 CGUUGCCAUCUGCUA 117 367 CAUCAAUGAGGCCUA 118 368 CUCCAGCGACUGCAA 119 369 AAGGAGGAGACCCAA 120 370 UGUCUGCCGAGCCGA 121 371 UGCCAAAGAUGUCAA 122 372 CUAGCCUUGCGUUCA 123 373 UCUCUGCCAAAGAUA 124 374 GGACGAUGCCUGCCA 125 375 UAGCCUUGCGUUCCA 126 376 ACCUGCUUUGUGUCA 127 377 UAACUUGAAGAUAUA 128 378 CAAGGGAAGGGCACA 129 379 CGUGGCUGGCAUUGA 130 380 UGAAGCCAAGCCUCA 131 381 CCUCACCAAGAUCCA 132 382 GGUCAUCACAGUUGA 133 383 GCAAGCAGACAUUUA 134 384 UUCUAGACCUGUUUA 135 385 GCCCACAACGCUUUA 136 386 UGUCCUCUCUGUUGA 137 387 AAGGAUCCGUGGAGA 138 388 UCCUGCACAGUCCUA 139 389 ACAUUUAUCUUUUGA 140 390 CAAGGAGGCAGGAUA 141 391 CUUUGGCCGCUGUGA 142 392 CACAGCAGGAACUGA 143 393 CUGCUCUAUGCCAGA 144 394 UGUCAUCAAUGAGGA 145 395 CGAGGACGGCGACUA 146 396 CAGGAUUCUUCCCAA 147 397 CGUCAAGCACCCACA 148 398 CACCUGCUUUGUGUA 149 399 CCACGCUUCCUGCUA 150 400 AGGCAGAGACUGAUA 151 401 CCAUGAUGCUGUCUA 152 402 CAUUGCAGCCAUGAA 153 403 CUAUGCCAGGCUGUA 154 404 CUCUGCUCUAUGCCA 155 405 GUCAGCCCAACCAGA 156 406 UAUCUUUUGGGUCUA 157 407 CCGCUGUGUGGACCA 158 408 CAGCCUGGUGGAGGA 159 409 UUGGCAGCUGUUUUA 160 410 UUGGGUCUGUCCUCA 161 411 CAAGCAAGCAGACAA 162 412 CUCUCUGUUGCCUUA 163 413 UAUCUCCUAGACACA 164 414 AGAGACUGAUCCACA 165 415 GUUGGCAGCUGUUUA 166 416 CCACAAGCCGCCUGA 167 417 UGAGGCCUGGUUCCA 168 418 AGUGAGCCAGGCAGA 169 419 GAUGGCCCUCAUCUA 170 420 CACAGACCAGGAAGA 171 421 CUGGAAUGCAAAGUA 172 422 AUGGCAUCUAGCCAA 173 423 UGGCAUUGCAGCCAA 174 424 AAGCACCCACACCCA 175 425 CCCACAACGCUUUUA 176 426 CUGGCUUCCUGGUGA 177 427 CAUGGAAUCCCGGCA 178 428 CUACGAGGAGCUGGA 179 429 UGAGGACCAGCGGGA 180 430 UGGCUGGCAUUGCAA 181 431 CAAAGAUGUCAUCAA 182 432 UGGAGGUGUAUCUCA 183 433 CAAGCACCCACACCA 184 434 CCGAGUUGAGGCAGA 185 435 UGGUCACCGACUUCA 186 436 AGGAGGACGAGGACA 187 437 AACAGUGAGGCUGGA 188 438 UUAUUCGGAAAAGCA 189 439 CUGCCAAGCUCACAA 190 440 CCAGCAUCCACGCUA 191 441 GACUCCUCUGUCUUA 192 442 CCAAGCAAGCAGACA 193 443 GUGCUGCCUGCUACA 194 444 GAGGCCAGCAUCCAA 195 445 GACAUUUAUCUUUUA 196 446 UGUUUUGCAGGACUA 197 447 UCACCAAGAUCCUGA 198 448 CACCUUCCACCGCUA 199 449 CUACGCCAUUGCCAA 200 450 GGAGGACUCCUCUGA 201 451 UGCUGAGCUGCUCCA 202 452 UGCCAAGCUCACACA 203 453 AUUGCCAGGUGCUGA 204 454 CAGUGAGGCUGGGAA 205 455 UGCUCCAGUUUCUCA 206 456 UGAUCCACUUCUCUA 207 457 GAUGAGUGGCGACCA 208 458 AAAGCCAGCUGGUCA 209 459 CAAGAUCCUGCAUGA 210 460 CAACUUUGGCCGCUA 211 461 GUCCUCACAGGCUGA 212 462 CGUCCACACAGCUCA 213 463 UGCUGCCUGCUACCA 214 464 CGAGCCGGAGCUCAA 215 465 UGUAUCUCCUAGACA 216 466 CGGGACCCGCUUCCA 217 467 CAAGCUCACACAGCA 218 468 AAAAGCCAGCUGGUA 219 469 GUGGACCUCUUUGCA 220 470 CCUCUAGGUCUCCUA 221 471 CUGUUUUGCAGGACA 222 472 CUACGUGGUGGUGCA 223 473 CCUGGCCCUUGAGUA 224 474 GAGCUUUAAAAUGGA 225 475 GGGCCCACAACGCUA 226 476 UCCACUUCUCUGCCA 227 477 CCCUAGAAGGUUUCA 228 478 UGCUGGUCACCGCUA 229 479 CCUCCAGCGACUGCA 230 480 UUAUUCUGGGUUUUA 231 481 GUGUCUACGCCAUUA 232 482 UUGUAACUUGAAGAA 233 483 UUUUGCUUUUGUAAA 234 484 UGUAACUUGAAGAUA 235 485 CUCCUAGACACCAGA 236 486 AGUCAGAGCGCACUA 237 487 CAGCAAGUGUGACAA 238 488 GAGGACUCCUCUGUA 239 489 UUUGCUUUUGUAACA 240 490 AAGGAGGCAGGAUUA 241 491 CAGCCACCUUCCACA 242 492 AGCCAACCCGCUCCA 243 493 AAGAUGAGUGGCGAA 244 494 AGGAGGACUCCUCUA 245 495 CCGAGCCGGAGCUCA 246 496 AGGUCAUCACAGUUA 247 497 GGUGGAGGUGUAUCA 248 498 UCUGCUCUAUGCCAA 249 499 AGCUGCUGAGCUGCA 250 500 AAGAUGUCAUCAAUA
TABLE-US-00006 TABLE 2d SEQ ID # NO: 250 modified sense strands 1 895 fC.mA.fC.mC.fC.mU.fC.mA.fU.mA.fG.mG.fC.mC.fA 2 896 fC.mC.fU.mG.fG.mA.fG.mU.fU.mU.fA.mU.fU.mC.fA 3 897 fA.mG.fG.mC.fC.mU.fG.mG.fA.mG.fU.mU.fU.mA.fA 4 898 fC.mU.fG.mG.fA.mG.fU.mU.fU.mA.fU.mU.fC.mG.fA 5 899 fC.mA.fU.mC.fU.mG.fC.mU.fG.mC.fC.mG.fG.mA.fA 6 900 f.mA.fU.mA.fG.mG.fC.mC.fU.mG.fG.mA.fG.mU.fA 7 901 fG.mG.fC.mA.fC.mC.fC.mU.fC.mA.fU.mA.fG.mG.fA 8 902 fA.mC.fC.mC.fU.mC.fA.mU.fA.mG.fG.mC.fC.mU.fA 9 903 fC.mU.fC.mA.fU.mA.fG.mG.fC.mC.fU.mG.fG.mA.fA 10 904 fC.mC.fC.mU.fG.mA.fG.mG.fA.mC.fC.mA.fG.mC.fA 11 905 fG.mC.fC.mU.fG.mG.fA.mG.fU.mU.fU.mA.fU.mU.fA 12 906 fC.mU.fG.mA.fG.mC.fU.mG.fC.mU.fC.mC.fA.mG.fA 13 907 fU.mG.fG.mA.fG.mU.fU.mU.fA.mU.fU.mC.fG.mG.fA 14 908 fG.mU.fU.mC.fC.mC.fU.mG.fA.mG.fG.mA.fC.mC.fA 15 909 fU.mU.fC.mC.fC.mU.fG.mA.fG.mG.fA.mC.fC.mA.fA 16 910 fG.mG.fC.mC.fU.mG.fG.mA.fG.mU.fU.mU.fA.mU.fA 17 911 fU.mC.fA.mU.fA.mG.fG.mC.fC.mU.fG.mG.fA.mG.fA 18 912 fC.mC.fC.mU.fC.mA.fU.mA.fG.mG.fC.mC.fU.mG.fA 19 913 fG.mG.fU.mU.fC.mC.fC.mU.fG.mA.fG.mG.fA.mC.fA 20 914 fG.mC.fA.mC.fC.mC.fU.mC.fA.mU.fA.mG.fG.mC.fA 21 915 fG.mA.fG.mU.fU.mU.fA.mU.fU.mC.fG.mG.fA.mA.fA 22 916 fU.mC.fC.mU.fG.mC.fU.mG.fC.mC.fA.mU.fG.mC.fA 23 917 fU.mC.fU.mG.fC.mU.fG.mC.fC.mG.fG.mA.fG.mC.fA 24 918 fC.mU.fG.mC.fC.mG.fG.mA.fG.mC.fC.mG.fG.mC.fA 25 919 fU.mG.fG.mU.fU.mC.fC.mC.fU.mG.fA.mG.fG.mA.fA 26 920 fA.mU.fC.mU.fG.mC.fU.mG.fC.mC.fG.mG.fA.mG.fA 27 921 fG.mC.fU.mG.fC.mC.fC.mA.fC.mG.fU.mG.fG.mC.fA 28 922 fU.mU.fU.mU.fG.mU.fA.mA.fC.mU.fU.mG.fA.mA.fA 29 923 fU.mA.fG.mA.fC.mC.fU.mG.fU.mU.fU.mU.fG.mC.fA 30 924 fU.mA.fU.mU.fU.mA.fU.mU.fC.mU.fG.mG.fG.mU.fA 31 925 fA.mA.fG.mC.fA.mG.fA.mC.fA.mU.fU.mU.fA.mU.fA 32 926 fC.mU.fU.mU.fU.mG.fU.mA.fA.mC.fU.mU.fG.mA.fA 33 927 fC.mU.fG.mU.fC.mC.fU.mC.fU.mC.fU.mG.fU.mU.fA 34 928 fA.mC.fU.mU.fG.mA.fA.mG.fA.mU.fA.mU.fU.mU.fA 35 929 fU.mU.fU.mA.fA.mA.fA.mU.fG.mG.fU.mU.fC.mC.fA 36 930 fC.mU.fA.mG.fA.mC.fC.mU.fG.mU.fU.mU.fU.mG.fA 37 931 fG.mU.fU.mU.fU.mG.fU.mA.fG.mC.fA.mU.fU.mU.fA 38 932 fC.mA.fU.mU.fU.mA.fU.mC.fU.mU.fU.mU.fG.mG.fA 39 933 fC.mA.fU.mU.fG.mC.fC.mA.fG.mG.fU.mG.fC.mU.fA 40 934 fG.mG.fA.mG.fG.mC.fA.mG.fG.mA.fU.mU.fC.mU.fA 41 935 fC.mA.fG.mA.fG.mA.fC.mU.fG.mA.fU.mC.fC.mA.fA 42 936 fA.mU.fA.mU.fU.mU.fA.mU.fU.mC.fU.mG.fG.mG.fA 43 937 fG.mA.fU.mA.fU.mU.fU.mA.fU.mU.fC.mU.fG.mG.fA 44 938 fU.mU.fU.mG.fU.mA.fA.mC.fU.mU.fG.mA.fA.mG.fA 45 939 fG.mG.fG.mU.fU.mU.fU.mG.fU.mA.fG.mC.fA.mU.fA 46 940 fC.mC.fU.mG.fU.mU.fU.mU.fG.mC.fU.mU.fU.mU.fA 47 941 fA.mA.fC.mU.fU.mG.fA.mA.fG.mA.fU.mA.fU.mU.fA 48 942 fC.mU.fG.mC.fU.mU.fU.mG.fU.mG.fU.mC.fA.mC.fA 49 943 fU.mU.fG.mA.fA.mG.fA.mU.fA.mU.fU.mU.fA.mU.fA 50 944 fG.mG.fU.mU.fU.mU.fG.mU.fA.mG.fC.mA.fU.mU.fA 51 945 fC.mA.fG.mC.fA.mC.fC.mU.fG.mC.fU.mU.fU.mG.fA 52 946 fA.mA.fG.mA.fU.mA.fU.mU.fU.mA.fU.mU.fC.mU.fA 53 947 fU.mG.fU.mU.fU.mU.fG.mC.fU.mU.fU.mU.fG.mU.fA 54 948 fA.mU.fU.mC.fU.mG.fG.mG.fU.mU.fU.mU.fG.mU.fA 55 949 fA.mC.fC.mU.fG.mU.fU.mU.fU.mG.fC.mU.fU.mU.fA 56 950 fG.mG.fU.mC.fA.mC.fC.mG.fA.mC.fU.mU.fC.mG.fA 57 951 fC.mU.fG.mU.fU.mU.fU.mG.fC.mU.fU.mU.fU.mG.fA 58 952 fG.mC.fU.mU.fU.mU.fG.mU.fA.mA.fC.mU.fU.mG.fA 59 953 fA.mU.fG.mC.fA.mA.fA.mG.fU.mC.fA.mA.fG.mG.fA 60 954 fC.mA.fG.mC.fA.mU.fC.mC.fA.mC.fG.mC.fU.mU.fA 61 955 fC.mA.fA.mG.fC.mA.fG.mA.fC.mA.fU.mU.fU.mA.fA 62 956 fG.mC.fU.mU.fU.mA.fA.mA.fA.mU.fG.mG.fU.mU.fA 63 957 fC.mA.fA.mU.fG.mA.fG.mG.fC.mC.fU.mG.fG.mU.fA 64 958 fU.mU.fU.mA.fU.mU.fC.mU.fG.mG.fG.mU.fU.mU.fA 65 959 fC.mU.fU.mU.fA.mA.fA.mA.fU.mG.fG.mU.fU.mC.fA 66 960 fG.mA.fA.mG.fA.mU.fA.mU.fU.mU.fA.mU.fU.mC.fA 67 961 fA.mA.fG.mC.fC.mA.fA.mG.fC.mC.fU.mC.fU.mU.fA 68 962 fA.mU.fG.mA.fG.mG.fC.mC.fU.mG.fG.mU.fU.mC.fA 69 963 fA.mG.fA.mU.fA.mU.fU.mU.fA.mU.fU.mC.fU.mG.fA 70 964 fG.mA.fG.mG.fC.mA.fG.mG.fA.mU.fU.mC.fU.mU.fA 71 965 fU.mC.fU.mA.fG.mA.fC.mC.fU.mG.fU.mU.fU.mU.fA 72 966 fC.mA.fU.mC.fC.mA.fC.mG.fC.mU.fU.mC.fC.mU.fA 73 967 fC.mA.fG.mC.fC.mC.fA.mA.fC.mC.fA.mG.fU.mG.fA 74 968 fG.mA.fU.mC.fC.mU.fG.mC.fA.mU.fG.mU.fC.mU.fA 75 969 fG.mG.fU.mG.fU.mA.fU.mC.fU.mC.fC.mU.fA.mG.fA 76 970 fU.mC.fU.mG.fG.mG.fU.mU.fU.mU.fG.mU.fA.mG.fA 77 971 fC.mA.fU.mG.fA.mU.fG.mC.fU.mG.fU.mC.fU.mG.fA 78 972 fU.mA.fG.mA.fC.mA.fC.mC.fA.mG.fC.mA.fU.mA.fA 79 973 fG.mC.fU.mG.fC.mU.fC.mC.fA.mG.fU.mU.fU.mC.fA 80 974 fU.mU.fU.mG.fG.mG.fU.mC.fU.mG.fU.mC.fC.mU.fA 81 975 fU.mG.fU.mC.fU.mA.fC.mG.fC.mC.fA.mU.fU.mG.fA 82 976 fG.mA.fC.mU.fG.mC.fA.mG.fC.mA.fC.mC.fU.mG.fA 83 977 fC.mA.fC.mC.fA.mA.fG.mG.fA.mG.fG.mC.fA.mG.fA 84 978 fC.mA.fU.mG.fG.mU.fC.mA.fC.mC.fG.mA.fC.mU.fA 85 979 fU.mC.fU.mA.fU.mG.fC.mC.fA.mG.fG.mC.fU.mG.fA 86 980 fG.mU.fC.mU.fG.mU.fC.mC.fU.mC.fU.mC.fU.mG.fA 87 981 fA.mG.fG.mA.fA.mC.fU.mG.fA.mG.fC.mC.fA.mG.fA 88 982 fA.mG.fA.mC.fC.mA.fG.mG.fA.mA.fG.mC.fU.mC.fA 89 983 fC.mG.fA.mC.fU.mG.fC.mA.fG.mC.fA.mC.fC.mU.fA 90 984 fC.mA.fC.mA.fG.mA.fC.mA.fG.mG.fC.mC.fA.mG.fA 91 985 fC.mA.fG.mC.fU.mC.fC.mA.fG.mG.fC.mG.fG.mU.fA 92 986 fC.mC.fA.mC.fA.mA.fC.mG.fC.mU.fU.mU.fU.mG.fA 93 987 fU.mA.fU.mG.fC.mC.fA.mG.fG.mC.fU.mG.fU.mG.fA 94 988 fG.mA.fG.mC.fA.mU.fG.mG.fA.mA.fU.mC.fC.mC.fA 95 989 fA.mG.fG.mG.fU.mC.fA.mU.fG.mG.fU.mC.fA.mC.fA 96 990 fA.mG.fA.mC.fC.mU.fG.mU.fU.mU.fU.mG.fC.mU.fA 97 991 fG.mA.fG.mG.fA.mG.fU.mG.fA.mG.fC.mC.fA.mG.fA 98 992 fG.mA.fC.mU.fG.mA.fU.mC.fC.mA.fC.mU.fU.mC.fA 99 993 fC.mU.fA.mG.fA.mC.fA.mC.fC.mA.fG.mC.fA.mU.fA 100 994 fC.mA.fG.mC.fA.mG.fG.mA.fA.mC.fU.mG.fA.mG.fA 101 995 fC.mU.fG.mG.fU.mG.fG.mA.fG.mG.fU.mG.fU.mA.fA 102 996 fA.mU.fU.mG.fC.mA.fG.mC.fC.mA.fU.mG.fA.mU.fA 103 997 fU.mC.fU.mG.fU.mC.fC.mU.fC.mU.fC.mU.fG.mU.fA 104 998 fA.mG.fC.mC.fA.mA.fG.mC.fC.mU.fC.mU.fU.mC.fA 105 999 fA.mA.fU.mC.fG.mA.fG.mG.fG.mC.fA.mG.fG.mG.fA 106 1000 fC.mC.fU.mG.fG.mC.fU.mU.fC.mC.fU.mG.fG.mU.fA 107 1001 fC.mA.fG.mG.fA.mA.fG.mC fU.mC.fC.mC fU.mC.fA 108 1002 fA.mG.fC.mU.fU.mU.fA.mA.fA.mA.fU.mG.fG.mU.fA 109 1003 fC.mA.fG.mG.fC.mC.fA.mG.fC.mA.fA.mG.fU.mG.fA 110 1004 fU.mG.fA.mA.fG.mA.fU.mG.fA.mG.fU.mG.fG.mC.fA 111 1005 fC.mA.fC.mU.fU.mC.fU.mC.fU.mG.fC.mC.fA.mA.fA 112 1006 fC.mA.fU.mC.fG.mA.fG.mG.fA.mG.fG.mA.fC.mU.fA 113 1007 fC.mA.fU.mC.fU.mA.fG.mC.fC.mA.fG.mA.fG.mG.fA 114 1008 fG.mU.fC.mC.fA.mC.fA.mC.fA.mG.fC.mU.fC.mC.fA 115 1009 fC.mU.fG.mA.fU.mC.fC.mA.fC.mU.fU.mC.fU.mC.fA 116 1010 fC.mG.fU.mU.fG.mC.fC.mA.fU.mC.fU.mG.fC.mU.fA 117 1011 fC.mA.fU.mC.fA.mA.fU.mG.fA.mG.fG.mC.fC.mU.fA 118 1012 fC.mU.fC.mC.fA.mG.fC.mG.fA.mC.fU.mG.fC.mA.fA 119 1013 fA.mA.fG.mG.fA.mG.fG.mA.fG.mA.fC.mC.fC.mA.fA 120 1014 fU.mG.fU.mC.fU.mG.fC.mC.fG.mA.fG.mC.fC.mG.fA 121 1015 fU.mG.fC.mC.fA.mA.fA.mG.fA.mU.fG.mU.fC.mA.fA 122 1016 fC.mU.fA.mG.fC.mC.fU.mU.fG.mC.fG.mU.fU.mC.fA 123 1017 fU.mC.fU.mC.fU.mG.fC.mC.fA.mA.fA.mG.fA.mU.fA 124 1018 fG.mG.fA.mC.fG.mA.fU.mG.fC.mC.fU.mG.fC.mC.fA 125 1019 fU.mA.fG.mC.fC.mU.fU.mG.fC.mG.fU.mU.fC.mC.fA 126 1020 fA.mC.fC.mU.fG.mC.fU.mU.fU.mG.fU.mG.fU.mC.fA 127 1021 fU.mA.fA.mC.fU.mU.fG.mA.fA.mG.fA.mU.fA.mU.fA 128 1022 fC.mA.fA.mG.fG.mG.fA.mA.fG.mG.fG.mC.fA.mC.fA 129 1023 fC.mG.fU.mG.fG.mC.fU.mG.fG.mC.fA.mU.fU.mG.fA 130 1024 fU.mG.fA.mA.fG.mC.fC.mA.fA.mG.fC.mC.fU.mC.fA 131 1025 fC.mC.fU.mC.fA.mC.fC.mA.fA.mG.fA.mU.fC.mC.fA 132 1026 fG.mG.fU.mC.fA.mU.fC.mA.fC.mA.fG.mU.fU.mG.fA 133 1027 fG.mC.fA.mA.fG.mC.fA.mG.fA.mC.fA.mU.fU.mU.fA 134 1028 fU.mU.fC.mU.fA.mG.fA.mC.fC.mU.fG.mU.fU.mU.fA 135 1029 fG.mC.fC.mC.fA.mC.fA.mA.fC.mG.fC.mU.fU.mU.fA 136 1030 fU.mG.fU.mC.fC.mU.fC.mU.fC.mU.fG.mU.fU.mG.fA 137 1031 fA.mA.fG.mG.fA.mU.fC.mC.fG.mU.fG.mG.fA.mG.fA 138 1032 fU.mC.fC.mU.fG.mC.fA.mC.fA.mG.fU.mC.fC.mU.fA 139 1033 fA.mC.fA.mU.fU.mU.fA.mU.fC.mU.fU.mU.fU.mG.fA 140 1034 fC.mA.fA.mG.fG.mA.fG.mG.fC.mA.fG.mG.fA.mU.fA 141 1035 fC.mU.fU.mU.fG.mG.fC.mC.fG.mC.fU.mG.fU.mG.fA 142 1036 fC.mA.fC.mA.fG.mC.fA.mG.fG.mA.fA.mC.fU.mG.fA 143 1037 fC.mU.fG.mC.fU.mC.fU.mA.fU.mG.fC.mC.fA.mG.fA 144 1038 fU.mG.fU.mC.fA.mU.fC.mA.fA.mU.fG.mA.fG.mG.fA 145 1039 f.mG.fA.mG.fG.mA.fC.mG.fG.mC.fG.mA.fC.mU.fA 146 1040 fC.mA.fG.mG.fA.mU.fU.mC.fU.mU.fC.mC.fC.mA.fA 147 1041 fC.mG.fU.mC.fA.mA.fG.mC.fA.mC.fC.mC.fA.mC.fA 148 1042 fC.mA.fC.mC.fU.mG.fC.mU.fU.mU.fG.mU.fG.mU.fA 149 1043 fC.mC.fA.mC.fG.mC.fU.mU.fC.mC.fU.mG.fC.mU.fA 150 1044 fA.mG.fG.mC.fA.mG.fA.mG.fA.mC.fU.mG.fA.mU.fA 151 1045 fC.mC.fA.mU.fG.mA.fU.mG.fC.mU.fG.mU.fC.mU.fA 152 1046 fC.mA.fU.mU.fG.mC.fA.mG.fC.mC.fA.mU.fG.mA.fA 153 1047 fC.mU.fA.mU.fG.mC.fC.mA.fG.mG.fC.mU.fG.mU.fA 154 1048 fC.mU.fC.mU.fG.mC.fU.mC.fU.mA.fU.mG.fC.mC.fA 155 1049 fG.mU.fC.mA.fG.mC.fC.mC.fA.mA.fC.mC.fA.mG.fA 156 1050 fU.mA.fU.mC.fU.mU.fU.mU.fG.mG.fG.mU.fC.mU.fA 157 1051 fC.mC.fG.mC.fU.mG.fU.mG.fU.mG.fG.mA.fC.mC.fA 158 1052 fC.mA.fG.mC.fC.mU.fG.mG.fU.mG.fG.mA.fG.mG.fA 159 1053 fU.mU.fG.mG.fC.mA.fG.mC.fU.mG.fU.mU.fU.mU.fA 160 1054 fU.mU.fG.mG.fG.mU.fC.mU.fG.mU.fC.mC.fU.mC.fA 161 1055 fC.mA.fA.mG.fC.mA.fA.mG.fC.mA.fG.mA.fC.mA.fA 162 1056 fC.mU.fC.mU.fC.mU.fG.mU.fU.mG.fC.mC.fU.mU.fA 163 1057 fU.mA.fU.mC.fU.mC.fC.mU.fA.mG.fA.mC.fA.mC.fA 164 1058 fA.mG.fA.mG.fA.mC.fU.mG.fA.mU.fC.mC.fA.mC.fA 165 1059 fG.mU.fU.mG.fG.mC.fA.mG.fC.mU.fG.mU.fU.mU.fA 166 1060 fC.mC.fA.mC.fA.mA.fG.mC.fC.mG.fC.mC.fU.mG.fA 167 1061 fU.mG.fA.mG.fG.mC.fC.mU.fG.mG.fU.mU.fC.mC.fA 168 1062 fA.mG.fU.mG.fA.mG.fC.mC.fA.mG.fG.mC.fA.mG.fA 169 1063 fG.mA.fU.mG.fG.mC.fC.mC.fU.mC.fA.mU.fC.mU.fA 170 1064 fC.mA.fC.mA.fG.mA.fC.mC.fA.mG.fG.mA.fA.mG.fA 171 1065 fC.mU.fG.mG.fA.mA.fU.mG.fC.mA.fA.mA.fG.mU.fA 172 1066 fA.mU.fG.mG.fC.mA.fU.mC.fU.mA.fG.mC.fC.mA.fA 173 1067 fU.mG.fG.mC.fA.mU.fU.mG.fC.mA.fG.mC.fC.mA.fA 174 1068 fA.mA.fG.mC.fA.mC.fC.mC.fA.mC.fA.mC.fC.mC.fA 175 1069 fC.mC.fC.mA.fC.mA.fA.mC.fG.mC.fU.mU.fU.mU.fA 176 1070 fC.mU.fG.mG.fC.mU.fU.mC.fC.mU.fG.mG.fU.mG.fA 177 1071 fC.mA.fU.mG.fG.mA.fA.mU.fC.mC.fC.mG.fG.mC.fA 178 1072 fC.mU.fA.mC.fG.mA.fG.mG.fA.mG.fC.mU.fG.mG.fA 179 1073 fU.mG.fA.mG.fG.mA.fC.mC.fA.mG.fC.mG.fG.mG.fA 180 1074 fU.mG.fG.mC.fU.mG.fG.mC.fA.mU.fU.mG.fC.mA.fA 181 1075 fC.mA.fA.mA.fG.mA.fU.mG.fU.mC.fA.mU.fC.mA.fA 182 1076 fU.mG.fG.mA.fG.mG.fU.mG.fU.mA.fU.mC.fU.mC.fA 183 1077 fC.mA.fA.mG.fC.mA.fC.mC.fC.mA.fC.mA.fC.mC.fA 184 1078 fC.mC.fG.mA.fG.mU.fU.mG.fA.mG.fG.mC.fA.mG.fA 185 1079 fU.mG.fG.mU.fC.mA.fC.mC.fG.mA.fC.mU.fU.mC.fA 186 1080 fA.mG.fG.mA.fG.mG.fA.mC.fG.mA.fG.mG.fA.mC.fA 187 1081 fA.mA.fC.mA.fG.mU.fG.mA.fG.mG.fC.mU.fG.mG.fA 188 1082 fU.mU.fA.mU.fU.mC.fG.mG.fA.mA.fA.mA.fG.mC.fA 189 1083 fC.mU.fG.mC.fC.mA.fA.mG.fC.mU.fC.mA.fC.mA.fA 190 1084 fC.mC.fA.mG.fC.mA.fU.mC.fC.mA.fC.mG.fC.mU.fA 191 1085 fG.mA.fC.mU.fC.mC.fU.mC.fU.mG.fU.mC.fU.mU.fA 192 1086 fC.mC.fA.mA.fG.mC.fA.mA.fG.mC.fA.mG.fA.mC.fA 193 1087 fG.mU.fG.mC.fU.mG.fC.mC.fU.mG.fC.mU.fA.mC.fA 194 1088 fG.mA.fG.mG.fC.mC.fA.mG.fC.mA.fU.mC.fC.mA.fA 195 1089 fG.mA.fC.mA.fU.mU.fU.mA.fU.mC.fU.mU.fU.mU.fA 196 1090 fU.mG.fU.mU.fU.mU.fG.mC.fA.mG.fG.mA.fC.mU.fA 197 1091 fU.mC.fA.mC.fC.mA.fA.mG.fA.mU.fC.mC.fU.mG.fA 198 1092 fC.mA.fC.mC.fU.mU.fC.mC.fA.mC.fC.mG.fC.mU.fA 199 1093 fC.mU.fA.mC.fG.mC.fC.mA.fU.mU.fG.mC.fC.mA.fA 200 1094 fG.mG.fA.mG.fG.mA.fC.mU.fC.mC.fU.mC.fU.mG.fA 201 1095 fU.mG.fC.mU.fG.mA.fG.mC.fU.mG.fC.mU.fC.mC.fA 202 1096 fU.mG.fC.mC.fA.mA.fG.mC.fU.mC.fA.mC.fA.mC.fA 203 1097 fA.mU.fU.mG.fC.mC.fA.mG.fG.mU.fG.mC.fU.mG.fA 204 1098 fC.mA.fG.mU.fG.mA.fG.mG.fC.mU.fG.mG.fG.mA.fA 205 1099 fU.mG.fC.mU.fC.mC.fA.mG.fU.mU.fU.mC.fU.mC.fA 206 1100 fU.mG.fA.mU.fC.mC.fA.mC.fU.mU.fC.mU.fC.mU.fA 207 1101 fG.mA.fU.mG.fA.mG.fU.mG.fG.mC.fG.mA.fC.mC.fA 208 1102 fA.mA.fA.mG.fC.mC.fA.mG.fC.mU.fG.mG.fU.mC.fA 209 1103 fC.mA.fA.mG.fA.mU.fC.mC.fU.mG.fC.mA.fU.mG.fA 210 1104 fC.mA.fA.mC.fU.mU.fU.mG.fG.mC.fC.mG.fC.mU.fA 211 1105 fG.mU.fC.mC.fU.mC.fA.mC.fA.mG.fG.mC.fU.mG.fA 212 1106 fC.mG.fU.mC.fC.mA.fC.mA.fC.mA.fG.mC.fU.mC.fA 213 1107 fU.mG.fC.mU.fG.mC.fC.mU.fG.mC.fU.mA.fC.mC.fA 214 1108 fC.mG.fA.mG.fC.mC.fG.mG.fA.mG.fC.mU.fC.mA.fA 215 1109 fU.mG.fU.mA.fU.mC.fU.mC.fC.mU.fA.mG.fA.mC.fA 216 1110 fC.mG.fG.mG.fA.mC.fC.mC.fG.mC.fU.mU.fC.mC.fA 217 1111 fC.mA.fA.mG.fC.mU.fC.mA.fC.mA.fC.mA.fG.mC.fA 218 1112 fA.mA.fA.mA.fG.mC.fC.mA.fG.mC.fU.mG.fG.mU.fA 219 1113 fG.mU.fG.mG.fA.mC.fC.mU.fC.mU.fU.mU.fG.mC.fA 220 1114 fC.mC.fU.mC.fU.mA.fG.mG.fU.mC.fU.mC.fC.mU.fA 221 1115 fC.mU.fG.mU.fU.mU.fU.mG.fC.mA.fG.mG.fA.mC.fA 222 1116 fC.mU.fA.mC.fG.mU.fG.mG.fU.mG.fG.mU.fG.mC.fA 223 1117 fC.mC.fU.mG.fG.mC.fC.mC.fU.mU.fG.mA.fG.mU.fA 224 1118 fG.mA.fG.mC.fU.mU.fU.mA.fA.mA.fA.mU.fG.mG.fA 225 1119 fG.mG.fG.mC.fC.mC.fA.mC.fA.mA.fC.mG.fC.mU.fA 226 1120 fU.mC.fC.mA.fC.mU.fU.mC.fU.mC.fU.mG.fC.mC.fA 227 1121 fC.mC.fC.mU.fA.mG.fA.mA.fG.mG.fU.mU.fU.mC.fA 228 1122 fU.mG.fC.mU.fG.mG.fU.mC.fA.mC.fC.mG.fC.mU.fA 229 1123 fC.mC.fU.mC.fC.mA.fG.mC.fG.mA.fC.mU.fG.mC.fA 230 1124 fU.mU.fA.mU.fU.mC.fU.mG.fG.mG.fU.mU.fU.mU.fA 231 1125 fG.mU.fG.mU.fC.mU.fA.mC.fG.mC.fC.mA.fU.mU.fA 232 1126 fU.mU.fG.mU.fA.mA.fC.mU.fU.mG.fA.mA.fG.mA.fA 233 1127 fU.mU.fU.mU.fG.mC.fU.mU.fU.mU.fG.mU.fA.mA.fA 234 1128 fU.mG.fU.mA.fA.mC.fU.mU.fG.mA.fA.mG.fA.mU.fA 235 1129 fC.mU.fC.mC.fU.mA.fG.mA.fC.mA.fC.mC.fA.mG.fA 236 1130 fA.mG.fU.mC.fA.mG.fA.mG.fC.mG.fC.mA.fC.mU.fA 237 1131 fC.mA.fG.mC.fA.mA.fG.mU.fG.mU.fG.mA.fC.mA.fA 238 1132 fG.mA.fG.mG.fA.mC.fU.mC.fC.mU.fC.mU.fG.mU.fA 239 1133 fU.mU.fU.mG.fC.mU.fU.mU.fU.mG.fU.mA.fA.mC.fA 240 1134 fA.mA.fG.mG.fA.mG.fG.mC.fA.mG.fG.mA.fU.mU.fA 241 1135 fC.mA.fG.mC.fC.mA.fC.mC.fU.mU.fC.mC.fA.mC.fA 242 1136 fA.mG.fC.mC.fA.mA.fC.mC.fC.mG.fC.mU.fC.mC.fA 243 1137 fA.mA.fG.mA.fU.mG.fA.mG.fU.mG.fG.mC.fG.mA.fA 244 1138 fA.mG.fG.mA.fG.mG.fA.mC.fU.mC.fC.mU.fC.mU.fA 245 1139 fC.mC.fG.mA.fG.mC.fC.mG.fG.mA.fG.mC.fU.mC.fA 246 1140 fA.mG.fG.mU.fC.mA.fU.mC.fA.mC.fA.mG.fU.mU.fA 247 1141 fG.mG.fU.mG.fG.mA.fG.mG.fU.mG.fU.mA.fU.mC.fA 248 1142 fU.mC.fU.mG.fC.mU.fC.mU.fA.mU.fG.mC.fC.mA.fA 249 1143 fA.mG.fC.mU.fG.mC.fU.mG.fA.mG.fC.mU.fG.mC.fA 250 1144 fA.mA.fG.mA.fU.mG.fU.mC.fA.mU.fC.mA.fA.mU.fA
[0242] Tables 3a to 3d below show nucleobase sequences and sugar-phosphate backbone modifications of antisense and sense strands of further 43 constructs as described herein. For corresponding entries in the sequence listing, the following applies: entry number in Table 3a+500=entry number in the sequence listing; entry number in Table 3c+543=entry number in the sequence listing.
TABLE-US-00007 TABLE 3a SEQ ID # NO: 43 antisense nucleobase sequences 1 501 UUCUUUGGCAGAGAAGUGG 2 502 UCAUGCAGGAUCUUGGUGA 3 503 UUAAACUCCAGGCCUAUGA 4 504 UGCAAUGCCAGCCACGUGG 5 505 UGACUUUGCAUUCCAGACC 6 506 UAACCGUGCCCUUCCCUUG 7 507 UAGUGGAUCAGUCUCUGCC 8 508 UCAUUCUCGAAGUCGGUGA 9 509 UAACUCCAGGCCUAUGAGG 10 510 UAACUUCAAGGCCAGCUCC 11 511 UAAUGGCGUAGACACCCUC 12 512 UUAGAGGCAGGCAUCGUCC 13 513 UACCUCCACGGAUCCUUGG 14 514 UCAGUCUCUGCCUCAACUC 15 515 UUCUUGGUGAGGUAUCCCC 16 516 UAGAUGGCAACGGCUGUCA 17 517 UACACCUCCACCAGGCUGC 18 518 UUGGAAGACAUGCAGGAUC 19 519 UAUGAGGGUGCCGCUAACC 20 520 UUUCUCGAAGUCGGUGACC 21 521 UAAGUGGAUCAGUCUCUGC 22 522 UCACUCUGUAUGCUGGUGU 23 523 UGUGUGGACGCUGCAGUUG 24 524 UGUAGAGGCAGGCAUCGUC 25 525 UCUGUAUGCUGGUGUCUAG 26 526 UUCAAGGCCAGCUCCAGCA 27 527 UAAGUCGGUGACCAUGACC 28 528 UCACACUUGCUGGCCUGUC 29 529 UGUCUGUGGAAGCGGGUCC 30 530 UUUGGCAGAGAAGUGGAUC 31 531 UAGAAGGCCAUGGAAGACA 32 532 UUUGAGGACGCGGCUGUAC 33 533 UUUCCCGGUGGUCACUCUG 34 534 UAUGCUGGUGUCUAGGAGA 35 535 UGGAAGGUGGCUGUGGUUC 36 536 UAAACUCCAGGCCUAUGAG 37 537 UUCCACGGGAUGCUCUGGG 38 538 UUCCGCUCCAGGUUCCACG 39 539 UUCAGCACCACCACGUAGG 40 540 UCCUCCUCGGGCACAUUCU 41 541 UUUCCGAAUAAACUCCAGG 42 542 UUUCCAUGCUCCUUGACUU 43 543 UGCUCCUUGACUUUGCAUU
TABLE-US-00008 TABLE 3b SEQ ID # NO: 43 modified antisense strands 1 1145 [mU][#][fU][#][mC][fU][mU][fU][mG][fG][mC][fA][mG][fA][mG] [fA][#][mA][#][fG][#][mU][#][fG][#][rG] 2 1146 [mU][#][fC][#][mA][fU][mG][fC][mA][fG][mG][fA][mU][fC][mU] [fU][#][mG][#][fG][#][mU][#][fG][#][rA] 3 1147 [mU][#][fU][#][mA][fA][mA][fC][mU][fC][mC][fA][mG][fG][mC] [fC][#][mU][#][fA][#][mU][#][fG][#][rA] 4 1148 [mU][#][fG][#][mC][fA][mA][fU][mG][fC][mC][fA][mG][fC][mC] [fA][#][mC][#][fG][#][mU][#][fG][#][rG] 5 1149 [mU][#][fG][#][mA][fC][mU][fU][mU][fG][mC][fA][mU][fU][mC] [fC][#][mA][#][fG][#][mA][#][fC][#][rC] 6 1150 [mU][#][fA][#][mA][fC][mC][fG][mU][fG][mC][fC][mC][fU][mU] [fC][#][mC][#][fC][#][mU][#][fU][#][rG] 7 1151 [mU][#][fA][#][mG][fU][mG][fG][mA][fU][mC][fA][mG][fU][mC] [fU][#][mC][#][fU][#][mG][#][fC][#][rC] 8 1152 [mU][#][fC][#][mA][fU][mU][fC][mU][fC][mG][fA][mA][fG][mU] [fC][#][mG][#][fG][#][mU][#][fG][#][rA] 9 1153 [mU][#][fA][#][mA][fC][mU][fC][mC][fA][mG][fG][mC][fC][mU] [fA][#][mU][#][fG][#][mA][#][fG][#][rG] 10 1154 [mU][#][fA][#][mA][fC][mU][fU][mC][fA][mA][fG][mG][fC][mC] [fA][#][mG][#][fC][#][mU][#][fC][#][rC] 11 1155 [mU][#][fA][#][mA][fU][mG][fG][mC][fG][mU][fA][mG][fA][mC] [fA][#][mC][#][fC][#][mC][#][fU][#][rC] 12 1156 [mU][#][fU][#][mA][fG][mA][fG][mG][fC][mA][fG][mG][fC][mA] [fU][#][mC][#][fG][#][mU][#][fC][#][rC] 13 1157 [mU][#][fA][#][mC][fC][mU][fC][mC][fA][mC][fG][mG][fA][mU] [fC][#][mC][#][fU][#][mU][#][fG][#][rG] 14 1158 [mU][#][fC][#][mA][fG][mU][fC][mU][fC][mU][fG][mC][fC][mU] [fC][#][mA][#][fA][#][mC][#][fU][#][rC] 15 1159 [mU][#][fU][#][mC][fU][mU][fG][mG][fU][mG][fA][mG][fG][mU] [fA][#][mU][#][fC][#][mC][#][fC][#][rC] 16 1160 [mU][#][fA][#][mG][fA][mU][fG][mG][fC][mA][fA][mC][fG][mG][fC][#][mU][#][fG][#][mU][#][fC][#][rA] 17 1161 [mU][#][fA][#][mC][fA][mC][fC][mU][fC][mC][fA][mC][fC][mA][fG][#][mG][#][fC][#][mU][#][fG][#][rC] 18 1162 [mU][#][fU][#][mG][fG][mA][fA][mG][fA][mC][fA][mU][fG][mC][fA][#][mG][#][fG][#][mA][#][fU][#][rC] 19 1163 [mU][#][fA][#][mU][fG][mA][fG][mG][fG][mU][fG][mC][fC][mG][fC][#][mU][#][fA][#][mA][#][fC][#][rC] 20 1164 [mU][#][fU][#][mU][fC][mU][fC][mG][fA][mA][fG][mU][fC][mG][fG][#][mU][#][fG][#][mA][#][fC][#][rC] 21 1165 [mU][#][fA][#][mA][fG][mU][fG][mG][fA][mU][fC][mA][fG][mU][fC][#][mU][#][fC][#][mU][#][fG][#][rC] 22 1166 [mU][#][fC][#][mA][fC][mU][fC][mU][fG][mU][fA][mU][fG][mC][fU][#][mG][#][fG][#][mU][#][fG][#][rU] 23 1167 [mU][#][fG][#][mU][fG][mU][fG][mG][fA][mC][fG][mC][fU][mG][fC][#][mA][#][fG][#][mU][#][fU][#][rG] 24 1168 [mU][#][fG][#][mU][fA][mG][fA][mG][fG][mC][fA][mG][fG][mC][fA][#][mU][#][fC][#][mG][#][fU][#][rC] 25 1169 [mU][#][fC][#][mU][fG][mU][fA][mU][fG][mC][fU][mG][fG][mU][fG][#][mU][#][fC][#][mU][#][fA][#][rG] 26 1170 [mU][#][fU][#][mC][fA][mA][fG][mG][fC][mC][fA][mG][fC][mU][fC][#][mC][#][fA][#][mG][#][fC][#][rA] 27 1171 [mU][#][fA][#][mA][fG][mU][fC][mG][fG][mU][fG][mA][fC][mC][fA][#][mU][#][fG][#][mA][#][fC][#][rC] 28 1172 [mU][#][fC][#][mA][fC][mA][fC][mU][fU][mG][fC][mU][fG][mG][fC][#][mC][#][fU][#][mG][#][fU][#][rC] 29 1173 [mU][#][fG][#][mU][fC][mU][fG][mU][fG][mG][fA][mA][fG][mC][fG][#][mG][#][fG][#][mU][#][fC][#][rC] 30 1174 [mU][#][fU][#][mU][fG][mG][fC][mA][fG][mA][fG][mA][fA][mG][fU][#][mG][#][fG][#][mA][#][fU][#][rC] 31 1175 [mU][#][fA][#][mG][fA][mA][fG][mG][fC][mC][fA][mU][fG][mG][fA][#][mA][#][fG][#][mA][#][fC][#][rA] 32 1176 [mU][#][fU][#][mU][fG][mA][fG][mG][fA][mC][fG][mC][fG][mG][fC][#][mU][#][fG][#][mU][#][fA][#][rC] 33 1177 [mU][#][fU][#][mU][fC][mC][fC][mG][fG][mU][fG][mG][fU][mC][fA][#][mC][#][fU][#][mC][#][fU][#][rG] 34 1178 [mU][#][fA][#][mU][fG][mC][fU][mG][fG][mU][fG][mU][fC][mU][fA][#][mG][#][fG][#][mA][#][fG][#][rA] 35 1179 [mU][#][fG][#][mG][fA][mA][fG][mG][fU][mG][fG][mC][fU][mG][fU][#][mG][#][fG][#][mU][#][fU][#][rC] 36 1180 [mU][#][fA][#][mA][fA][mC][fU][mC][fC][mA][fG][mG][fC][mC][fU][#][mA][#][fU][#][mG][#][fA][#][rG] 37 1181 [mU][#][fU][#][mC][fC][mA][fC][mG][fG][mG][fA][mU][fG][mC][fU][#][mC][#][fU][#][mG][#][fG][#][rG] 38 1182 [mU][#][fU][#][mC][fC][mG][fC][mU][fC][mC][fA][mG][fG][mU][fU][#][mC][#][fC][#][mA][#][fC][#][rG] 39 1183 [mU][#][fU][#][mC][fA][mG][fC][mA][fC][mC][fA][mC][fC][mA][fC][#][mG][#][fU][#][mA][#][fG][#][rG] 40 1184 [mU][#][fC][#][mC][fU][mC][fC][mU][fC][mG][fG][mG][fC][mA][fC][#][mA][#][fU][#][mU][#][fC][#][rU] 41 1185 [mU][#][fU][#][mU][fC][mC][fG][mA][fA][mU][fA][mA][fA][mC] [fU][#][mC][#][fC][#][mA][#][fG][#][rG] 42 1186 [mU][#][fU][#][mU][fC][mC][fA][mU][fG][mC][fU][mC][fC][mU] [fU][#][mG][#][fA][#][mC][#][fU][#][rU] 43 1187 [mU][#][fG][#][mC][fU][mC][fC][mU][fU][mG][fA][mC][fU][mU] [fU][#][mG][#][fC][#][mA][#][fU][#][rU]
TABLE-US-00009 TABLE 3c SEQ 43 sense nucleobase # ID NO: sequences 1 544 UCUCUGCCAAAGAA 2 545 AAGAUCCUGCAUGA 3 546 GGCCUGGAGUUUAA 4 547 UGGCUGGCAUUGCA 5 548 GGAAUGCAAAGUCA 6 549 GAAGGGCACGGUUA 7 550 AGACUGAUCCACUA 8 551 GACUUCGAGAAUGA 9 552 UAGGCCUGGAGUUA 10 553 UGGCCUUGAAGUUA 11 554 UGUCUACGCCAUUA 12 555 AUGCCUGCCUCUAA 13 556 GAUCCGUGGAGGUA 14 557 GAGGCAGAGACUGA 15 558 UACCUCACCAAGAA 16 559 GCCGUUGCCAUCUA 17 560 CUGGUGGAGGUGUA 18 561 UGCAUGUCUUCCAA 19 562 GCGGCACCCUCAUA 20 563 CCGACUUCGAGAAA 21 564 GACUGAUCCACUUA 22 565 AGCAUACAGAGUGA 23 566 GCAGCGUCCACACA 24 567 UGCCUGCCUCUACA 25 568 CACCAGCAUACAGA 26 569 GAGCUGGCCUUGAA 27 570 UGGUCACCGACUUA 28 571 GCCAGCAAGUGUGA 29 572 CGCUUCCACAGACA 30 573 ACUUCUCUGCCAAA 31 574 UCCAUGGCCUUCUA 32 575 GCCGCGUCCUCAAA 33 576 UGACCACCGGGAAA 34 577 UAGACACCAGCAUA 35 578 ACAGCCACCUUCCA 36 579 AGGCCUGGAGUUUA 37 580 AGCAUCCCGUGGAA 38 581 AACCUGGAGCGGAA 39 582 GUGGUGGUGCUGAA 40 583 GUGCCCGAGGAGGA 41 584 AGUUUAUUCGGAAA 42 585 AAGGAGCAUGGAAA 43 586 AAAGUCAAGGAGCA
TABLE-US-00010 TABLE 3d SEQ ID # NO: 43 modified sense strands 1 1188 [mU][#][fC][#][mU][fC][mU][fG][mC][fC][mA][fA][mA][fG][#][mA][#][fA][#][3XGalNac] 2 1189 [mA][#][fA][#][mG][fA][mU][fC][mC][fU][mG][fC][mA][fU][#][mG][#][fA][#][3XGalNac] 3 1190 [mG][#][fG][#][mC][fC][mU][fG][mG][fA][mG][fU][mU][fU][#][mA][#][fA][#][3XGalNac] 4 1191 [mU][#][fG][#][mG][fC][mU][fG][mG][fC][mA][fU][mU][fG][#][mC][#][fA][#][3XGalNac] 5 1192 [mG][#][fG][#][mA][fA][mU][fG][mC][fA][mA][fA][mG][fU][#][mC][#][fA][#][3XGalNac] 6 1193 [mG][#][fA][#][mA][fG][mG][fG][mC][fA][mC][fG][mG][fU][#][mU][#][fA][#][3XGalNac] 7 1194 [mA][#][fG][#][mA][fC][mU][fG][mA][fU][mC][fC][mA][fC][#][mU][#][fA][#][3XGalNac] 8 1195 [mG][#][fA][#][mC][fU][mU][fC][mG][fA][mG][fA][mA][fU][#][mG][#][fA][#][3XGalNac] 9 1196 [mU][#][fA][#][mG][fG][mC][fC][mU][fG][mG][fA][mG][fU][#][mU][#][fA][#][3XGalNac] 10 1197 [mU][#][fG][#][mG][fC][mC][fU][mU][fG][mA][fA][mG][fU][#][mU][#][fA][#][3XGalNac] 11 1198 [mU][#][fG][#][mU][fC][mU][fA][mC][fG][mC][fC][mA][fU][#][mU][#][fA][#][3XGalNac] 12 1199 [mA][#][fU][#][mG][fC][mC][fU][mG][fC][mC][fU][mC][fU][#][mA][#][fA][#][3XGalNac] 13 1200 [mG][#][fA][#][mU][fC][mC][fG][mU][fG][mG][fA][mG][fG][#][mU][#][fA][#][3XGalNac] 14 1201 [mG][#][fA][#][mG][fG][mC][fA][mG][fA][mG][fA][mC][fU][#][mG][#][fA][#][3XGalNac] 15 1202 [mU][#][fA][#][mC][fC][mU][fC][mA][fC][mC][fA][mA][fG][#][mA][#][fA][#][3XGalNac] 16 1203 [mG][#][fC][#][mC][fG][mU][fU][mG][fC][mC][fA][mU][fC][#][mU][#][fA][#][3XGalNac] 17 1204 [mC][#][fU][#][mG][fG][mU][fG][mG][fA][mG][fG][mU][fG][#][mU][#][fA][#][3XGalNac] 18 1205 [mU][#][fG][#][mC][fA][mU][fG][mU][fC][mU][fU][mC][fC][#][mA][#][fA][#][3XGalNac] 19 1206 [mG][#][fC][#][mG][fG][mC][fA][mC][fC][mC][fU][mC][fA][#][mU][#][fA][#][3XGalNac] 20 1207 [mC][#][fC][#][mG][fA][mC][fU][mU][fC][mG][fA][mG][fA][#][mA][#][fA][#][3XGalNac] 21 1208 [mG][#][fA][#][mC][fU][mG][fA][mU][fC][mC][fA][mC][fU][#][mU][#][fA][#][3XGalNac] 22 1209 [mA][#][fG][#][mC][fA][mU][fA][mC][fA][mG][fA][mG][fU][#][mG][#][fA][#][3XGalNac] 23 1210 [mG][#][fC][#][mA][fG][mC][fG][mU][fC][mC][fA][mC][fA][#][mC][#][fA][#][3XGalNac] 24 1211 [mU][#][fG][#][mC][fC][mU][fG][mC][fC][mU][fC][mU][fA][#][mC][#][fA][#][3XGalNac] 25 1212 [mC][#][fA][#][mC][fC][mA][fG][mC][fA][mU][fA][mC][fA][#][mG][#][fA][#][3XGalNac] 26 1213 [mG][#][fA][#][mG][fC][mU][fG][mG][fC][mC][fU][mU][fG][#][mA][#][fA][#][3XGalNac] 27 1214 [mU][#][fG][#][mG][fU][mC][fA][mC][fC][mG][fA][mC][fU][#][mU][#][fA][#][3XGalNac] 28 1215 [mG][#][fC][#][mC][fA][mG][fC][mA][fA][mG][fU][mG][fU][#][mG][#][fA][#][3XGalNac] 29 1216 [mC][#][fG][#][mC][fU][mU][fC][mC][fA][mC][fA][mG][fA][#][mC][#][fA][#][3XGalNac] 30 1217 [mA][#][fC][#][mU][fU][mC][fU][mC][fU][mG][fC][mC][fA][#][mA][#][fA][#][3XGalNac] 31 1218 [mU][#][fC][#][mC][fA][mU][fG][mG][fC][mC][fU][mU][fC][#][mU][#][fA][#][3XGalNac] 32 1219 [mG][#][fC][#][mC][fG][mC][fG][mU][fC][mC][fU][mC][fA][#][mA][#][fA][#][3XGalNac] 33 1220 [mU][#][fG][#][mA][fC][mC][fA][mC][fC][mG][fG][mG][fA][#][mA][#][fA][#][3XGalNac] 34 1221 [mU][#][fA][#][mG][fA][mC][fA][mC][fC][mA][fG][mC][fA][#][mU][#][fA][#][3XGalNac] 35 1222 [mA][#][fC][#][mA][fG][mC][fC][mA][fC][mC][fU][mU][fC][#][mC][#][fA][#][3XGalNac] 36 1223 [mA][#][fG][#][mG][fC][mC][fU][mG][fG][mA][fG][mU][fU][#][mU][#][fA][#][3XGalNac] 37 1224 [mA][#][fG][#][mC][fA][mU][fC][mC][fC][mG][fU][mG][fG][#][mA][#][fA][#][3XGalNac] 38 1225 [mA][#][fA][#][mC][fC][mU][fG][mG][fA][mG][fC][mG][fG][#][mA][#][fA][#][3XGalNac] 39 1226 [mG][#][fU][#][mG][fG][mU][fG][mG][fU][mG][fC][mU][fG][#][mA][#][fA][#][3XGalNac] 40 1227 [mG][#][fU][#][mG][fC][mC][fC][mG][fA][mG][fG][mA][fG][#][mG][#][fA][#][3XGalNac] 41 1228 [mA][#][fG][#][mU][fU][mU][fA][mU][fU][mC][fG][mG][fA][#][mA][#][fA][#][3XGalNac] 42 1229 [mA][#][fA][#][mG][fG][mA][fG][mC][fA][mU][fG][mG][fA][#][mA][#][fA][#][3XGalNac] 43 1230 [mA][#][fA][#][mA][fG][mU][fC][mA][fA][mG][fG][mA][fG][#][mC][#][fA][#][3XGalNac]
[0243] It should also be noted that the scope of the disclosed embodiments extends to sequences that correspond to those in the Tables above, and wherein the 5′ nucleoside of the antisense (guide) strand (first region as defined in the claims herein) can include any nucleobase that can be present in an RNA molecule, in other words can be any of adenine (A), uracil (U), guanine (G) or cytosine (C). Additionally, the scope of the present embodiments extends to sequences that correspond to those in Table 1a or Table 1 b, and wherein the 3′ nucleoside of the sense (passenger) strand (second region as defined in the claims herein) can include any nucleobase that can be present in an RNA molecule, in other words can be any of adenine (A), uracil (U), guanine (G) or cytosine (C), advantageously however a nucleobase that is complementary to the 5′ nucleobase of the antisense (guide) strand (first region as defined in the claims herein). While the methods are shown and described as being a series of acts that are performed in a particular sequence, it is to be understood and appreciated that the methods are not limited by the order of the sequence. For example, some acts can occur in a different order than what is described herein. In addition, an act can occur concurrently with another act. Further, in some instances, not all acts may be required to implement a method described herein.
[0244] The order of the steps of the methods described herein is exemplary, but the steps may be carried out in any suitable order, or simultaneously where appropriate. Additionally, steps may be added or substituted in, or individual steps may be deleted from any of the methods without departing from the scope of the subject matter described herein. Aspects of any of the Examples described above may be combined with aspects of any of the other Examples described to form further Examples.
[0245] It will be understood that the above description of a particular embodiment is given by way of example only and that various modifications may be made by those skilled in the art. What has been described above includes Examples of one or more embodiments. It is, of course, not possible to describe every conceivable modification and alteration of the above compounds, compositions or methods for purposes of describing the aforementioned aspects, but one of ordinary skill in the art can recognize that many further modifications and permutations of various aspects are possible. Accordingly, the described aspects are intended to embrace all such alterations, modifications, and variations that fall within the scope of the appended claims.
EXAMPLES
[0246] The following Examples illustrate certain embodiments of the present disclosure and are not limiting. Moreover, where specific embodiments are provided, the inventors have contemplated generic application of those specific embodiments. For example, disclosure of an oligonucleotide having a particular motif or modification patterns provides reasonable support for additional oligonucleotides having the same or similar motif or modification patterns.
Example 1
[0247] Materials and Methods
[0248] Cell Culture:
[0249] HepG2 (ATCC cat. 85011430) cells were maintained by biweekly passing in EMEM supplemented with 10% FBS, 20 mM L-glutamine, 10 mM HEPES pH 7.2, 1 mM sodium pyruvate, 1xMEM non-essential amino acids, and 1xPen/Strep (EMEM complete).
[0250] PCSK9 Target identification and duplex preparation:
[0251] Targets to PCSK9 were identified by bioinformatic analysis on human PCSK9 mRNA sequence (refseq NM_174936.3). 250 targets were selected for synthesis as asymmetric duplexes (15 sense, 19 antisense). Compounds were dissolved to 50 uM in molecular biology grade water and annealed by heating at 95 C for 5 minutes followed by gradual cooling to room temperature.
[0252] PCSK9-Primary Screen:
[0253] On the day of transfection, HepG2 cells were collected by trypsinization, counted, and seeded in 96 well tissue culture treated plates at 10,000 cells per well in 50 uL complete EMEM with 20% FBS. Cells were allowed to rest for 4 hours before transfection with 2 pmoles of each respective PCSK9 duplex in triplicate via RNAiMax (ThermoFisher). In brief, 8 pmoles of each duplex were diluted in 100 uL OptiMEM and mixed gently with 0.8 uL of RNAiMax in 100 uL OptiMEM to make 200 uL total complex. 50 uL of each RNAiMax complexed duplex was added to each respective triplicate well of HepG2 cells for a final mixture of 20 nM duplex in a volume of 100 uL, 50/50 EMEM/OptiMEM at 10% FBS.
[0254] 72 hours post transfection, cells were harvested and RNA isolated using the PureLink Pro 96 total RNA Purification Kit (ThermoFisher, 12173011A) according to the manufacturer protocol. Harvested RNA was assayed for PCSK9 expression via Taqman qPCR using the Luna Universal Probe One-Step RT-qPCR Kit (NEB, E3006). Two separate qPCR assays were performed for each sample using two separate PCSK9 Taqman probe sets (Hs00545399_m1-FAM and Hs03037355_m1-FAM) multiplexed with a common GAPDH VIC probe (ThermoFisher, 4326317E). Thermocycling and data acquisition was performed with an Applied Biosystems QuantStudio 3 Real-Time PCR System.
[0255] PCSK9-Secondary Screen:
[0256] Based on data from the primary screen, the best performing 27 PCSK9 duplexes were tested in dose curves and IC50 values have been determined. As before, HepG2 cells were collected by trypsinization and seeded in 96 well tissue culture plates at 10,000 cells per well in 50 uL complete EMEM with 20% FBS and allowed to rest for 4 hours. Transfection complexes were formed by gently mixing 36 pmoles of each duplex in 180 uL OptiMEM with 2.16 uL RNAiMax in 180 uL OptiMEM to make 360 uL total complex. A two fold dilution series was then performed with basal OptiMEM. 50 uL of each dilution was added to respective triplicates of HepG2 cells to make a final dilution series of 50 nM down to 0.32 nM in a volume of 100 uL, 50/50 EMEM/OptiMEM at 10% FBS.
[0257] 72 hours post transfection, cells were harvested and RNA isolated using the PureLink Pro 96 total RNA Purification Kit (ThermoFisher, 12173011A) according to the manufacturer protocol. Harvested RNA was assayed for PCSK9 expression via Taqman qPCR using the Luna Universal Probe One-Step RT-qPCR Kit (NEB, E3006). A single qPCR assay was performed for each sample using PCSK9 Taqman probe set Hs00545399_m1-FAM multiplexed with a common GAPDH VIC probe (ThermoFisher, 4326317E). Thermocycling and data acquisition was performed with an Applied Biosystems QuantStudio 3 Real-Time PCR System.
Example 2
[0258] Results obtained by performing methods of Example 1
[0259]
[0260] Table 4 below and
TABLE-US-00011 % k/d at Sequence Anti-Sense SS Sequence the highest ID Sequence (5′ to 3′) (5′ to 3′) cone IC50 PCS44 UCUUCAAGUUACAAAAGCA UUUGUAACUUGAAGA 86.65 6.62 PCS46 UAAAAGCAAAACAGGUCUA CCJGUUUUGCUUUUA 79.14 10.59 PCS53 UACAAAAGCAAAACAGGUC UGUUOUGCUUUUGUA 86.08 11 50 PCS29 UGCAAAACAGGUCUAGAAA UAGACCUGUUUUGCA 80.50 13.54 PCS57 UCAAAAGCAAAACAGGUCU CUGUUUUGCUUUUGA 83.24 11.91 PCS52 UAGAAUAAAUAUCUUCAAG AAGAUAUUUAUUCUA 83.30 12.25 PCS55 UAAAGCAAAACAGGULUAG ACCUGUUUUGCUUUA 72.99 12.25 PCS232 uucuUCAAGUUACAAAAGC UUGUAACUUGAAGAA 71.48 12.70 PCS55 UCAAGUUACAAAAGCAAAA GCUUOUGUAACUUGA 79.06 12.32 PCS36 UCAAAACAGGUCUAGAAAA CUAGACCUGUUUUGA 78.57 13.75 PCS49 UAUAAAUAUCUUCAAGUUA UUGAAGAUAUUUAUA 79.11 14.02 PCS233 UUUACAAAAGCAAAACAGG UUUUSCUUUGUAAA 72.52 14.07 PCS48 UGUGACACAAAGCAGGUGC CUGCUUUGUGUCACA 76.03 14 $2 PCS28 UUUCAAGUUACAAAAGCAA UUUUGUAACUUGAAA 77.64 14.76 PCS34 UAAAUAUCUUCAAGUUACA ACUUGAAGAUAUUUA 80.55 16.03 PCS51 UAUAAAUGUCUGCUUGCUU AAGCAGACAUUUAUA 72.48 17.25 PCS13 UCCGAAUAAACUCCAGGCC UGGAGUUUAUUCGGA 71.05 19.35 PCS35 UGGAACCAUUUUAAAGCUC UUUAAAAUGGUUCCA 67.12 20.37 PCS43 UCCAGAAUAAAUAUCUUCA GAUAUUVAUUCUSGA 68.11 22.67 PCS127 UAUAUCUUCAAGUUACAAA UAACUUGAAGAUAUA 70.81 23.73 PCS100 UCUCAGUUCCUGCUGUGUG CAGCAGGAACUGAGA 74.42 24.71 PCS76 UCUACAAAACCCAGAAUAA UCUGGGUUUUGUAGA 68.90 27 SI PCS139 UCAAAAGAUAAAUGUCUGC ACAUUUAUCUUUUGA 58.47 37.81 PCS21 UUUCCGAAUAAACUCCAGG GAGUUUAUUCGGAAA 51.24 40 99 PCS87 UCUGGCUUCAGUUCCGCUG AGGAACUGAGCCAGA 64.33 42.26 PCS77 UCAGACAGCAUCAUGGCUG CAUGAUGCUGUCOGA 51.63 49.45 PCS94 UGGGAUUCCAUCCUUCUUG GAGCAUGGAAUCCCA 45.66 58.07
[0261] The IC50 data in the single- to double-digit nanomolar range demonstrate outstanding performance of numerous constructs as described herein.
Example 3
[0262] Optimized Double Stranded Constructs
[0263] Full definitions of the constructs are given in Table 5 below. AS=antisense strand (also referred as first region herein); SS=sense strand (also referred to as second region herein).
[0264] Notations are explained further above.
TABLE-US-00012 P29 AS 5′ mU*fG*mCfAmAfAmAfCmAfGmGfU*mC*fU*mA*fG*mA*fA* rA (SEQ ID NO: 1231) SS 5′ mA*fG*mAfCmCfUmGfUmUfUmUfG*mC*fA*/Mono-Galnac-PA/ /Mono-Galnac-PA//Mono-Galnac-PA/ (SEQ ID NO: 1232) P57 AS 5′ mU*fC*mAfAmAfAmGfCmAfAmAfA*mC*fA*mG*fG*mU*fC* rU (SEQ ID NO: 1233) SS 5′ mU*fG*mUfUmUfUmGfCmUfUmUfU*mG*fA*/Mono-Galnac-PA// Mono-Galnac-PA//Mono-Galnac-PA/ (SEQ ID NO: 1234) P53 AS 5′ mU*fA*mCfAmAfAmAfGmCfAmAfA*mA*fC*mA*fG*mG*fU* rC (SEQ ID NO: 1235) SS 5′ mG*fU*mUfUmUfGmCfUmUfUmUfG*mU*fA*/Mono-Galnac-PA// Mono-Galnac-PA//Mono-Galnac-PA/ (SEQ ID NO: 1236) P44 AS 5′ mU*fC*mUfUmCfAmAfGmUfUmAfC*mA*fA*mA*fA*mG*fC* rA (SEQ ID NO: 1237) SS 5′ mU*fU*mGfUmAfAmCfUmUfGmAfA*mG*fA*/Mono-Galnac-PA// Mono-Galnac-PA//Mono-Galnac-PA/ (SEQ ID NO: 1238) P29 AS [mU][#][fG][#][mC][fA][mA][fA][mA][fC][mA][fG][mG] (15) [fU][mC][fU][mA][#][fG][#][mA][#][fA][#][rA] (SEQ ID NO: 1239) SS [fU][#][mA][#][fG][mA][fC][mC][fU][mG][fU][mU][fU] [mU][mG][#][mC][#][mA][#][3XGalNAc SEQ ID NO: 1240)
[0265] Performance data are shown in
Example 4
[0266] Optimized hairpin molecules (mxRNAs)
[0267] Full definitions of the molecules are given in Table 6 below.
TABLE-US-00013 Compound name Structural definition PCS29 [mU][#][fG][#][mC][fA][mA][fA][mA][fC][mA][fG] (14-5-14) [mG][fU][mC][fU][#][mA][#][fG][#][mA][#][fA][#] [mA][#][mA][fG][mA][fC][mC][fU][mG][fU][mU][fU] [mU][fG][#][mC][#][fA][#][3xGalNAc] (SEQ ID NO: 587) PCS44 [mU][#][fC][#][mU][fU][mC][fA][mA][fG][mU][fU] (14-5-14) [mA][fC][mA][fA][#][mA][#][fA][#][mG][#][fC][#] [mA][#][mU][fU][mG][fU][mA][fA][mC][fU][mU][fG] [mA][fA][#][mG][#][fA][#][3xGalNAc] (SEQ ID NO: 588) PCS53 [mU][#][fA][#][mC][fA][mA][fA][mA][fG][mC][fA] (14-5-14) [mA][fA][mA][fC][#][mA][#][fG][#][mG][#][fU][#] [mC][#][mG][fU][mU][fU][mU][fG][mC][fU][mU][fU] [mU][fG][#][mU][#][fA][#][3xGalNAc] (SEQ ID NO: 589) PCS53 [dT][#][fA][#][mC][fA][mA][fA][mA][fG][mC][fA] (14-5-14) dT [mA][fA][mA][fC][#][mA][#][fG][#][mG][#][dT][#] [mC][#][mG][fU][mU][fU][mU][fG][mC][fU][mU][fU] [mU][fG][#][mU][#][fA][#][3xGalNAc] (SEQ ID NO: 590)
[0268] Performance data are shown in